lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 44444444444 222 1 111 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11 666666666666666 444444444444444444444444444 4444444444444444444444444444444 222 2222 333333
lowQualScore : 55555555555 222 6 3 3 99 3 6 7 555 2 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 66 33 4 444444444444444 4 3 444444444444444444444444444 3 0 5 22 5555555555555555555555555555555 333 6 2 1111 8 3 444444
lowQualScore : ........... ... . . . .. . . . ... . . . ................................................................................................................................................................................................................................................................................................................................................................................................... .. .. .. . ............... . . ........................... . . . .. ............................... ... . . .... . . ......
lowQualScore : 55555555555 888 6 0 8 22 5 0 7 222 4 4 7 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 11 88 0 888888888888888 0 4 999999999999999999999999999 1 2 0 99 0000000000000000000000000000000 333 0 8 8888 0 2 555555
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAANANANNNNNCATAC--TTATTGTCTGATGATGA--GGTCAATATCCGAATNTATNGACCTAATNTATGTGACATTCAC-GA----GGT-CAA-GGC-CGANACGAATATCCCAT-AGNTCAGGTCCATA---GATTTGGATATTGACCG-----ATATCACCAAACA-T-----G---------TG---T-----TTTATT---ATTA----C-G-AN--T-ATAA--ATTTCTGTTGTA--TTG-CTAAAAT---NAG--AAANNTTTCC--ATTT-AA-TATCACTTTCTA--AA-TTAA---GA--A---T----------T--------------------GACG-----------------T---AATCAA--TGTTTTACGT----CA--T----------AACTGTTT----TA-T-----A--CT--GT----GCATTTG-CGAT-TCTTGACACA--T--GTGC--GTTT-----AT-T-A----AACAATATCACTTTTCTC--A--G--------------------GTGAATATCACT-TTCTATCGGT----N-GACACG-TGATCGGTNAN-TCGACCAATCGTAACAGCGGAAATTTATAA-ATC-ATATAATAAANCTAGTAACAT
Reference ( gi|2 ) : TTTTTATCATTTGGAAATAATATTATTTAATGTAGTATTTATTGTATCTGTATATAAAATGAAATATATGAAACACTTTTTATAT--TTATTGACTGATAATGA--GGTTAATATCCAAATATCTGGACCTAATGTATGTGACATTCGCCAA----GGT-CAACGGC-TGAGACGAATATTCCAT-TGTTCAGATTCATA---GATTTGGATTTTGACCG-----ATATCATC------------G---------TG---T-----TTTATT---ACTA----T-G-AA--T-ATGA--GTTTCTGCCGTG--TTG-TTAAAGT---GAG--AAAGATTTTC--A-TC-AA-TATCACTCTTTA--AA-TTAA---GA-----------------T--------------------AACG-----------------T---AGTCAA--TGTTTTACGT----CA--T----------AACTGTTC----TA-T-----G--CT--GT----GCATTTG-CTGT-TATTGACACA--T--ATGC--GTCT-----A----G----AACAGTATCACTTTTCTC--A--G--------------------GTGAATATCACT-TTTTATCAGT----T-GACACT-TGGTCGGTTAA-T-GACCAATAGAAACAGCGGAAATCTGTGA-GTC-ATATAATAAAGCTA--AATAT
gi|5 : AATATATAATAAAAGTATCATAG--TTATTGTCTGATGATGG--AGTCTGTATCCATATCTATGGACCGGATCTAAGTAATATTCACAGA----GGTGCAA-GGC-CGAAGTGAATATTCCTA-AGGTCACGTTCATA---GGTTTGGATATTGACAG-----ATATCAACAAACA-------G---------TGATTT-----TTTATTAGGACT-----T-G-AG--T-A--A--ATTTCTGTTGTA--TTC-TTAAATT---TAGA-AAAAAACTCC--ATTT-AA-TTTAACTTTCTT--AA-TTTA---GAAAATGTTGACTTAAATGT--------------------AATG-----------------T---AACCAA--TGTTTGACAT----CA--T----------GACAGT
gi|17 : cATAT--AATACTGCGTATACAGTTATTGTCTGATGACGA--GGTCAATATCT-----TC--------ATATA-GTGAC---------------T-GACCGGCATTAG-TGAATATCATAT-AGAACAGGTCAATA---AATTTGGATATTGACCG-----ATTTTATCAAACAGTAA---G---------TG---T-----TTTATT---A
gi|17 : cACAC--TTACTGTTTGATAA-AATCGGTCAATATCCAAATTTATTGACCTGTTCTATATGATATTCACTAATGCCGGT-CA
gi|7 : catataatactgcgtatacagttattgtctgatgacgaggtcaatatcttcatatagtgac--TTATTGCCTGATGATGT--GATCAATATCTGAATATATTGACCTAA--TATAT--------------------------------ACGAATACCCCAT------AGA---A-A---GATTTGGATACTGACCA-----ATATCACTTGAAAATGAAATG---------TG---T-----TTTATT---TTTA----T-G-A---------------CT--TGTAAATTG-CTAAAAT---TAG--AAA--TTTTCCGA-TTTAA-TAACATT-TACA--AA-TCAACATGA-----------------T--------------------AACAACACAAACAATTTAACAT---AATCAA--TGTTTTACAT----CA--A----------AA--GTGC----TA-T-----A---T--AG----GAATTT---TGCATCTTGATACG--T--ATGtttatta
gi|11 : TATTGTCTATTGATGA--GTCTAATATCCAACTTTATAGGCCTTATGTATGGGACttt
gi|16 : aatatacaag--GGTCAATATCTTAATATATGGACCTAATATATAT-ACATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|16 : gacctaattatgtgatatacaccaaggtcgagatacGACCTAAT-TATGTGATATACACCAA----GGT-CGA------GATACATGTAT---ATATATT-AGGTCCATA---TATTAAGATATTGACCG-----ATATCACCT-----------C---------TG---TAAATGCTTATT---ATTA----C-GTCA--C-ATG------TCTGTTGTG--TTG-ATAAGGT--------AAAGATTTCC--gatatcacctctgtaaatgcttattattacgtcacatgtctgttgtgttgataaggtaaagatttcccccc
gi|1 : TCTGGTCCACA---GATTTGGATACCATCCA-----GTATCATCAGGTA-------G---------TA---T-----TTTATT---A---------G-GACTT-ATAA--ATTTCTGTTGTA--TTT-GTAAAATATGGAGCAGAACATTTTC--A-cccc
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacataacaataataatatacagtagttgtccaatgacaaggtcaatatccaaataattggacagggtccatgtgcccatcacagggaCAGATACATACATGAT---AATATTGACCGCTAAAATAAGACA------------G---------TACA-T-----TTTATT---ATTA----T-G-AC--TTATAAATGTTTC--CTGTG--ATG-TTAAAAT---ACG--AAATGTTTCC--ATTT-AA-TATCA--CTTTAGCAA-TTCA---GA-----------------T--------------------GACG-----------------TCAGAGT-AAGCTATTCTACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACT-----GA-CT--GT----GCATTGG-CGAT-TATCGACaaacaaagtcaacaaaaaagagactgtgacctgatgatgtctttaaaacacacaactgatctaccactgtttcaaatgaagtgcattgttaaatatgtaaatactcatgacaacacacaagtatgtttgtttcaaacagtatcactttctccagcgatatcactttctcaaagtggacctgtgatcggaaatcaaccaatcgtaacaccagagttttataagtcatataaaaatcaaacatatacataggtataacataaagattgtaaaata
gi|4 : TCCACA---GATATGAATATTGACTG-----ATATCATT------------AGACAGTTATTA---T-----TTTATT---ATTACTTTT-A-AA--T-------GTTTC--ATGTA--TTG-CTAAAAT---AAG--AA--CTTTTCCGATTC-AA-TAACACTTTCTA--AATTTAA---GACGACACT----------T--------------------GACG-----------------T---AAACAA--TGTTTGACGT----CT--T----------AACTGATT----TA-TTATTAA--CT--AT----GCATTGA-CAAT-CTTTGATACA--T--ATTT--GTTT-----T----G----AACAATATCA-TTTTCT---ATTG--------------------GTGGACA--A------TGTCA------T-G------TGATCAG-TAA-TCAACCAATTGCAACAGCAGAAATTTATAATATCTATATTATAAAACTAGTAATAT
gi|3 : TCCATA---TATTTGGATATTGACTG-----ATGGCGTCAAACAATAT---G---------TG---T-----TTTAGT---ATTA----CAG-CT--T-ATAA--ATGTCTGTTATA--TTGCTTAAtct
gi|6 : tCTGTTGTA--TAG-CTAAAAT---TAG--AATGTTTTCC--A-TT-AAACATCACT-TTAA--AA-TTAA---GA-----------------TTACATCAACTAAATTGATTTGACA-----------------T---AATCAA--TATTTTATGT----CAATT----------ACCAGTCC----TA-T-----A--CTATGT----GAATGTG---AT-CCTTGACACA--T--GTGC--ATTT-----ATTTCA----AACAATATCATTTTTTTC--A--G--------------------GTGAATATCTCT-TTCTATCTG-----C-GACACC-T------TTGACT-GCCCAATTGTAA-AGCTGAAATcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|12 : tccatagatcatgctggacattgaatacaatcagacagtatatgtttcatttttacaa----------AACTGTTT----TA-T-----ATACT--GTCTTTGCATCTGGCAAG-TCTTGCCACAC-T--GTGTTTGTTT-----T----A----AACAATATTACCTTTCTC--A--G--------------------GTTAATATCACG-TTTTATCA------C-GA---T-TGATTGGTAAT-T-GACCAATCGCAACAGCGGATTTTTATTT-ATC-TTATAATAt
gi|3 : ACACG--T--GTGT--GTTTGTTTTA----A----AACAATACCCATTATCTG--A--G--------------------GTCAATATCCCT-TTTTATTGGT----G-GACACG-TGATTGG-TAA-TCAATTAATCATGACAGCGGGAATTTGTAA-ATC-ATACAAtatttttaaactctactatcaatatcta
gi|1 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcACACAAGT--ATGTTTGTTT-----C----A----AACAGTATCACTTT-CTC--C--A--------------------GCGA-TATCACT-TTCTCAAAGT----G-GAC-CTGTGATCGG-AAA-TCAACCAATCGTAACACCAGAGTTTTATAA-GTC-ATATAA-AAATC-A--AACATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|14 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacataacaataataatatacagtagttgtccaatgacaaggtcaatatccaaataattggacagggtccatgtgcccatcacagggatctggtccacagatttggataccatccagtatcatcaggtagtattttattaggacttataaatttctgttgtatttgtaaaatatggagcagaacattttcaaaacaaagtcaacaaaaaagagactgtgacctgatgatgtctttaaaacacacaactgatctaccactgtttcaaatgaagtgcattgttaaatatgtaaatactcatgacaacACACA--T--GTGT--GTTT-----ATCTCA----AACAATATCACTTTTCCC--A--GTGGAATACCAGCTGTCACAGGTGACTATCACTTTTTTACTGGT----G-GACACA-TGATCAGatacataggtataacataaagattgtaaaata
gi|8 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacACACA--C--GTGC--GTTTT----ATTT-G----GTTAATACCATTTTTCTCTCA--T--------------------GTGAATAT-------------------T-GGCACG-TGATCGGTAAT-T-GACAAATTAAAGC-GTGAAAACTTATAT-TTC-ATATAATAca
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagacaCACA--TGCATGC--GACT----------GTTTCAACTACATCACCCTTTTT--A--G--------------------GTGACTATCACT-TACCATGGGTGCCATGGACATG-TGATCAGTAAT-T-GATCAAT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATTAATGTTAGCAATGTTTGTAACTGTTTTATACAGACTATGTACTGATGATTCTTGACATACTTCCATATTTTTAACACTATTACTGTCTATGCATGGCCACATAATAGCCAATCGAACAGTCGTATCAACTGAAATTTATTATAAAACATAAATAACATCCTTAATTT
Unaligned ( gi|15 ): AAGGTCAATAGATTTATAACCGACACTATAAGACAGTAACTATTTTATCCCTATGACTTTCACATTCCTGTTACATAACTAAATTAATGCAAAGTCCGTTTAATTTTACTTTCTTAATTTAGATAGCGTTAACATAAACAACTTACTGTATACAACGT
Unaligned ( gi|18 ): GAATATGTAAAATACTCATGTCAACGCACAGGTAGTTTTATTTTGTACAATATGACTTTCTTCGGTAAATATATTTTCTGTGGGTATTGGGTGGAAGTGTGATTGATAATTGACTTATCATAACCCC
Unaligned ( gi|19 ): AGTAAATATACAGTTATTGTCTGATGATGATGTCGGTGTCAAGTCTATGGACAATATTTTGTAAATGTGATAATTTACCCTGGTCACATGCTGTGAAGTGAATATCCCAAAGATC
Unaligned ( gi|20 ): GCTGATGAGGTCAGTATCTATGGAGATGACCTTAGTAAACATGGTTCATAGATTTGGATGCAGATCTACATCATTAGACAGTAAGTGTTTTACT
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 222 2222222222222222222222222222222222222222222222222222222 5555555555555555555555555555555 333333333 111111111 666666666666666666666666666666666666666666666666666666666666666 2222222222222222222222222222 55555555555555555555555555555555555555555555555555555 11111 333 333333333333333333333333333 1111111 33333333333 2
lowQualScore : 1 22222222 111 5 5 1 1 444 4444444444444444444444444444444444444444444444444444444 1 0 5 555 6666 33 3333333333333333333333333333333 2 2 222222222 0 3 1 0 3 1 0 999999999 3 22 3 8888 2 3 4 555555555555555555555555555555555555555555555555555555555555555 66 3 66 4444444444444444444444444444 66 77777777777777777777777777777777777777777777777777777 44444 444 3 44 555 3 555555555555555555555555555 2 2 3 0000000 11111111111 55 3 8 1 0 0 1 777 888 5 5 0 1 6
lowQualScore : . ........ ... . . . . ... ....................................................... . . . ... .... .. ............................... . . ......... . . . . . . . ......... . .. . .... . . . ............................................................... .. . .. ............................ .. ..................................................... ..... ... . .. ... . ........................... . . . ....... ........... .. . . . . . . ... ... . . . . .
lowQualScore : 0 00000000 555 0 1 0 0 444 7777777777777777777777777777777777777777777777777777777 4 5 9 444 5555 99 5555555555555555555555555555555 9 9 444444444 4 3 0 2 3 8 2 777777777 6 00 6 5555 5 9 0 666666666666666666666666666666666666666666666666666666666666666 11 8 11 4444444444444444444444444444 99 00000000000000000000000000000000000000000000000000000 22222 888 6 66 000 6 999999999999999999999999999 0 8 6 8888888 22222222222 00 5 8 0 0 7 1 111 888 7 7 1 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNNTATAN--TTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC----GGT-CA-A-G-GC--CG---AG----GCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGAC--CGATATCA--T--C-----AGAC---AG--T-----G--T-GTTTTAT-TATTAC-GACT---NTAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTTCTAAA-T--------TNAG-------------A----A----------T-TGA-----C-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTTCT--AT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGT-TT-GTTTC-GAAC-AATATCACTTTTCTC--A--G--------------------GTGAATATCAC-TTTC------TATC-GG-----TGGACACG--TGATCGGTAANTCGACCAATCGTAACAGCG--GAAATT---TATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAANANANNNNNCATAC--TTATTGTCTGATGATG-AGGTCAATATCCGAATNTATNGACCTAATNT-------ATGTGAC-ATTCAC-GA-GGT-CA-A-G-GC--CG---AN----ACGAATATCCCATAGNTCAGGTCCATA---GATT----TGGATATTGAC--CGATATCA--C--C-----AAAC---A---T-----G--T-GTTTTAT-TATTAC-GANT---ATAA-ATTTCT-GTTGTATTGCTAAAATN------A-G-AAANNTTTCC-ATT---TAATATCACTTTCTAAA-T--------TAAG-------------A----A----------T-TGA-----C-----------GT--AATCAA--TGTTTT----ACGT----CA--T----------AACTGTTTT--AT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGT-TT-ATT---AAAC-AATATCACTTTTCTC--A--G--------------------GTGAATATCAC-TTTC------TATC-GG-----TNGACACG--TGATCGGTNANTCGACCAATCGTAACAGCG--GAAATT---TATAA-ATC-ATATAATAAANCTAGTAACAT
gi|1 : ACATAACAATAATAATATACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATA-ATTG--------------------GAC-A-------G-GGT-CC-ATGTGC--C---------------CATCACAGGGATCTGGTCCACA---GATT----TGGATACCATC--CAGTATCA--T--C-----AGGT---A---------G--T-ATTTTAT-TAGGAC---TT---ATAA-ATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA---CAAAA-A--------AGAG-------------A----C----------TGTGA-----C-----------CT--GAT-GA--TGTCTTTAAAACA-----CA--C----------AACTGATCT--ACC----A--C----TGTTTCAAATGAAGTGCA--TTGTTAAATATG-TAAATACTCATGACAACACACAAG--TATGT-TT-GTTTC-AAAC-AGTATCACTTT-CTC--C--A--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TGGACCTG--TGATCGG-AAATCAACCAATCGTAACACCA--GAGTTT---TATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcCAGATACATACATGAT-------AATATTGAC--CGCTAAAA--T--A-----AGAC---AG--T-----A--C-ATTTTAT-TATTAT-GACTT--ATAA-ATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTTAGCAA-T--------TCAG-------------A-----------------TGA-----C-----------GTCAGAGTAAGCTATTCT----ACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACTG-A--C----TGT------------GCA--TT--------GG-CGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aatatacaagGAC--GAATATTA--T--C-----AAAC---AG--T-----AAAT-GTTTCAA-TATTAT-GACT---TTTA-ATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTTCCTAAA-T--------TGAG-------------A----gaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatgg----------AACTGTTTT--AT-----ATAC----TGTCTTT--------GCA--TC--------TGGCAA---GTCTTGCCA-----CAC---TGTGT-TT-GTTTT-AAAC-AATATTACCTTTCTC--A--G--------------------GTTAATATCAC-GTTT------TAT-------------CACGATTGATTGGTAATT-GACCAATCGCAACAGCG--GATTTT---TATTT-ATC-TTATAATAcgatgtccacataaataatataatgcaattgatgtttgacg
gi|13 : -------------A----A----------T-TAA-----T-----------GT--TAGCAA--TGTTT--------------G--T----------AACTGTTTT--AT-----A--CAGACTAT------------GTA--CT--------GA-TGA---TTCTTGACA-----TACT--TCCATATT-TTT---AA--------CACT--------------------------------------ATTAC-TGTC------TATG-CA-----TGGCCACA--TAAT-AGCCAATCGAACAGTCGTATCAACT--GAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : ACA-----CATG--TGTGT-TT-ATCTC-AAAC-AATATCACTTTTCCC--A--GTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TGGACACA--TGATCAGcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---AC--CGACACTA--T--A-----AGAC---AG--T-----AACT-ATTTTAT-CCCTAT-GACT---TTCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAGT--CC-GTT---TAATTTTACTTTCTTAA-T--------TTAG-------------ATAGCG----------T-TAA-----C-----------AT--AAACAA--ca
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC--------CA-A-G-GT--CG---AG----ATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGAC--CGATATCA--C--CTCTGTAA-----A---T-----G------CTTAT-TATTAC-G--T----CAC-ATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAG--TTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT--------------A-G-----------------TGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGAC--CGATTTTA--T--C-----AAAC---AG--TAA---G--T-GTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTT-TT-ATTTT-GTAC-AATATGACTTTCTTC-----G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TGGAAGTG--TGATTGATAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgATACAGTTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTAC-CCTGGT-CACA-T-GCTGTG---AA----GTGAATATCCCAAAGATCccc
gi|2 : agtaaatGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC-------GT-CT-C-A-GC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCTCATTATCAGTCAAT-----AAAT---A---TAAAAAG--T-GTTTCATATATTTC-------------ATTT-T-A-TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TTTCCAAA-TGA------TAAA-------------A----A----------
gi|2 : AATATATGAAACACTTTTTATAT--TTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAA-GGT-CA-ACG-GC--TG---AG----ACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGAC--CGATATCA--T--C----------------------G--T-GTTTTAT-TACTAT-GAAT---ATGA-GTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTCTTTAAA-T--------TAAG-------------A-----------------TAA-----C-----------GT--AGTCAA--TGTTTT----ACGT----CA--T----------AACTGTTCT--AT-----G--C----TGT------------GCA--TT--------TG-CTG---TTATTGACA-----CATA--TGCGT-CT-A-----GAAC-AGTATCACTTTTCTC--A--G--------------------GTGAATATCAC-TTTT------TATC-AG-----TTGACACT--TGGTCGGTTAAT-GACCAATAGAAACAGCG--GAAATC---TGTGA-GTC-ATATAATAAAGCTAgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGAT--CTACATCA--T--T-----AGAC---AG--TAA---G--T-GTTTTAC-Taatat
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGAC--TGATGGCG--T--C-----AAACAATA---T-----G--T-GTTTTAG-TATTACAGCTT---ATAA-ATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGT-TT-GTTTTAAAAC-AATACCCATTATCTG--A--G--------------------GTCAATATCCC-TTTT------TATT-GG-----TGGACACG--TGATTGGT-AATCAATTAATCATGACAGCG--GGAATT---TGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGAC--TGATATCA--T--T-----AGAC---AGT-T-----A--TTATTTTAT-TATTAC---TT---TTAA-ATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTTTCTAAATT--------TAAG-------------ACG--ACAC-------T-TGA-----C-----------GT--AAACAA--TGTTTG----ACGT----CT--T----------AACTGATTT--ATTATTAA--C----TAT------------GCA--TT--------GA-CAA---TCTTTGATA-----CATA--TTTGT-T---TT---GAAC-AATATCA-TTTTCT---ATTG--------------------GTGGACA----------------AT---G-----T---CATG--TGATCAGT-AATCAACCAATTGCAACAGCA--GAAATT---TATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAG--TTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGA-GGTGCA-A-G-GC--CG---AA----GTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGAC--AGATATCA--A--C-----AAAC---A---------G--T-GATTTTT-TATTAG-GACTTGAGTAA-ATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTTTCTTAA-T--------TTAG-------------A----AAATG------T-TGA-----CTTAAATGTAATGT--AACCAA--TGTTTG----ACAT----CA--T----------GACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA-----ATACAA--T--C-----AGAC---AGTAT-----A--T-GTTTCAT-TTTTAC-AA--------------CT-GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTTTA-AAA-T--------TAAGATTACATCAACTAA----A----------T-TGATTTGAC-----------AT--AATCAA--TATTTT----ATGT----CAATT----------ACCAGTCCT--AT-----A--C----TAT------------GTG--AA--------TG-TGA---TCCTTGACA-----CATG--TGCAT-TT-ATTTC-AAAC-AATATCATTTTTTTC--A--G--------------------GTGAATATCTC-TTTC------TATC-TG------CGACACC--T--T---TGACT-GCCCAATTGTAA-AGCT--GAAATT---
gi|7 : --TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------AT------------------------------------------ACGAATACCCCATAG---------AAA---GATT----TGGATACTGAC--CAATATCA--C--TTGA--AAATGAAA---T-----G--T-GTTTTAT-TTTTAT-GACTT--GTAA-ATT------------GCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TTTACAAA-TCAACATGATAAC-------------A----ACACAAACAATT-TAA-----C-----------AT--AATCAA--TGTTTT----ACAT----CA--A----------AAGTGCTAT--AT-----A----------------------GGAATTT--------TG-CA-----TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGT-TTTATT---TGGTTAATACCATTTTTCTCTCA--T--------------------GTGAATAT---------------------------TGGCACG--TGATCGGTAATT-GACAAAT--TAA-AGCGTGAAAACT---TATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagaca----TAT------------GTA--TA--------TG-C------TCATGACAGCA--CATGCATGCGA-CT-GTTT--CAAC-TACATCACCCTTTTT--A--G--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATGGACATG--TGATCAGTAATT-GATCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000 44444444444444444444 22222 222222222 3333333333333333333 11111 666666666666666666 11111111111 2222222222222222222222222222 55555555555555555555555555555555555555555555555555555 11111 333333333333333333333333 111111 222222222 111111 222 11
lowQualScore : 1 3333 22 888 5 1 3 11111111111111111111111111111111111111111111111111111 333 0 0 555 6666 33 33 00000000000000000000 2 11 3 00000 3 33333 0 000000000 3 22 3 8888 2 1111111111111111111 00000 5 777777777777777777 4 99999999999 55 1 55 4444444444444444444444444444 66 77777777777777777777777777777777777777777777777777777 44444 999 2 0 6 3 0 777777777777777777777777 0 2 0 3 000000 444444444 3 000000 55 0 333 0 1 777 888 5 5 0 1 88
lowQualScore : . .... .. ... . . . ..................................................... ... . . ... .... .. .. .................... . .. . ..... . ..... . ......... . .. . .... . ................... ..... . .................. . ........... .. . .. ............................ .. ..................................................... ..... ... . . . . . ........................ . . . . ...... ......... . ...... .. . ... . . ... ... . . . . ..
lowQualScore : 2 8888 00 999 0 0 9 99999999999999999999999999999999999999999999999999999 000 5 4 444 5555 99 99 99999999999999999999 9 88 3 11111 3 99999 2 000000000 6 00 6 5555 5 0000000000000000000 00000 3 888888888888888888 0 00000000000 55 0 55 4444444444444444444444444444 99 00000000000000000000000000000000000000000000000000000 22222 888 6 4 4 6 5 111111111111111111111111 5 0 5 6 555555 777777777 6 555555 00 4 777 7 1 111 888 7 7 1 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNNTACAG--TTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGAC-T---T-TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGGTAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNNTATAN--TTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGAC-T---N-TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGGTAANTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
gi|1 : ACATAACAATAATAATATACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATAATTGGACAGGGTCC-------ATGTGCC-CATCAC----------------------A----GG-------------GATCTGGTCCACA---GATT----TGGATACCATCCAGTATCA--TCAGGTA--GT-----------A-----T------T-T-TATTAGGAC-T---TATAA-ATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA----------------------CAAAAA-----AGAGA----C-------------TGTGAC-----------CT--GAT-GA--TGTCTTTAAAACA-----CA--C----------AACTGAT--CTACC----A--C----TGTTTCAAATGAAGTGCA--TTGTTAAATATG-TAAATACTCATGACAACACACAAG--TATGTTTGTTTCAAA-CAGTATCACTTT-CTC--CA--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TG-GA------CCTG--TGATCGG-AAATCAACCAATCGTAACACC--AGAGTT---TTATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcCAGATACATACATGAT-------AATATTGACCGCTAAAA--TAAGACA--GT-----------A-----C--ATTTTAT-TATTATGAC-T---TATAA-ATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTT-------------------AGCAAT-----TCAGA--------------------TGAC-----------GTCAGAGTAAGCTATTCT----ACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACTG-A--C----TGT------------GCA--TT--------GG-CGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TACAA--GTATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aataGACGAATATTA--TCAAACA--GT-----------AAA---T--GTTTCAA-TATTATGAC-T---T-TTA-ATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTTC-------------------CTAAAT-----TGAGACGATG-------------T-CCAC-----------AT--AAATAA--TATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatgg----------AACTGTT--TTAT-----ATAC----TGTCTTT--------GCA--TC--------TGGCAA---GTCTTGCCA-----CAC---TGTGTTTGTTTTAAA-CAATATTACCTTTCTC--AG--------------------GTTAATATCAC-GTTT------TAT--------------------CACGATTGATTGGTAATT-GACCAATCGCAACAGC--GGATTT---TTATTT-ATC-TTATAATAaatgcaattgatgtttgacg
gi|13 : A----A-------------T-TAAT-----------GT--TAGCAA--TGTTT--------------G--T----------AACTGTT--TTAT-----A--CAGACTAT------------GTA--CT--------GA-TGA---TTCTTGACA-----TAC-----------TTCC------ATAT---TTTTAAC---------------------------ACTATTAC-TGTC------TATG-CA-----TG-GC------CACA--TAATAGCCAA-TCGAACAGTCGTATCAAC--TGAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : ACA-----CATG--TGTGTTTATCTCAAA-CAATATCACTTTTCCC--AGTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TG-GA------CACA--TGATCAGCAcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---ACCGACACTA--TAAGACA--GT-----------AAC---T--ATTTTAT-CCCTATGAC-T---T-TCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAGT--CC-GTT---TAATTTTACTTT-------------------CTTAAT-----TTAGATAGCG-------------T-TAAC-----------AT--AAACAA--
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC-------CA-A-GGT--CG---A----GATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGACCGATATCACCTCTGTAA--AT-----------G----------CTTAT-TATTACG-------T-CAC-ATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAG--TTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT------------------------------AGTGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGACCGATTTTA--TCAAACA--GTAA---------G-----T--GTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTTTTATTTTGTA-CAATATGACTTTCTTC---G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TG-GA------AGTG--TGATTGATAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgTACAG--TTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTACCCTGGT-CACA-TGCTGTG---A----AGTGAATATCCCAAAGATCccc
gi|2 : agtaaataGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC------GT-CT-C-AGC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCT-CATTA--TCAGTCA--ATAAATATAAAAAG-----T--GTTTCATATATTTC-AT-T---T-TA-----------TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TTT-------------------CCAAAT-----
gi|2 : tttttatcAATATATGAAACACTTTTTATAT--TTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAAGGT-CA-ACGGC--TG---A----GACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGACCGATATCA--TC--------------------G-----T--GTTTTAT-TACTATGAA-T---A-TGA-GTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTCT-------------------TTAAAT-----TAAGA--------------------TAAC-----------GT--AGTCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----G--C----TGT------------GCA--TT--------TG-CTG---TTATTGACA-----CATA--TGCGTCTA----GAA-CAGTATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTT------TATC-AG-----TT-GA------CACT--TGGTCGGTTAAT-GACCAATAGAAACAGC--GGAAAT---CTGTGA-GTC-ATATAATAAAGCTA--AATATgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGATCTACATCA--TTAGACA--GTAA---------G-----T--GTTTTAC-T
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGACTGATGGCG--TCAAACAATAT-----------G-----T--GTTTTAG-TATTACAGCTT---A-TAA-ATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGTTTGTTTTAAAACAATACCCATTATCTG--AG--------------------GTCAATATCCC-TTTT------TATT-GG-----TG-GA------CACG--TGATTGGTAA-TCAATTAATCATGACAGC--GGGAAT---TTGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGACTGATATCA--TTAGACA--GT-----------TAT---T--ATTTTAT-TATTAC--T-T---T-TAA-ATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTTT-------------------CTAAAT-----TTAAG----ACGACAC-------T-TGAC-----------GT--AAACAA--TGTTTG----ACGT----CT--T----------AACTGAT--TTATTATTAA--C----TAT------------GCA--TT--------GA-CAA---TCTTTGATA-----CAT------ATTTGTTTTGAA-C------------------------------------------AATATCAT-TTTC------TATT-GG-----TG-GACAATGTCATG--TGATCAGTAA-TCAACCAATTGCAACAGC--AGAAAT---TTATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAG--TTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGAGGTGCA-A-GGC--CG---A----AGTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGACAGATATCA--ACAAACA--GT-----------G--------ATTTT-T-TATTAGGAC-TTGAG-TAA-ATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTTT-------------------CTTAAT-----TTAGA----AAATG---------T-TGACTTAAATGTAATGT--AACCAA--TGTTTG----ACAT----CA--T----------GACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA---ATACAA--TCAGACA--GT-----------A-----TATGTTTCAT-TTTTACAAC-T----------------GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTTTAAAATTAAGATTACATCAACTAAAT-----T--GA----T-------------T-TGAC-----------AT--AATCAA--TATTTT----ATGT----CAATT----------ACCAGTC--CTAT-----A--C----TAT------------GTG--AA--------TG-TGA---TCCTTGACA-----CATG--TGCATTTATTTCAAA-CAATATCATTTTTTTC--AG--------------------GTGAATATCTC-TTTC------TATC--------TGCGA------CACC--T--TTG---ACT-GCCCAATTGTAA-AGC--TGAAAT---T
gi|7 : --TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------ATA----------------------------------------CGAATACCCCATAGA--------A-A---GATT----TGGATACTGACCAATATCA--CTTGAAA--AT-----------GAAATGT--GTTTTAT-TTTTATGAC-T---TGTAA-ATT------------GCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TTT-------------------ACAAATCAACATGATA----ACAACACAAACAATT-TAAC-----------AT--AATCAA--TGTTTT----ACAT----CA--A----------AAGTGCT--ATAT-----A----------------------GGAATTT--------TG-CA-----TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGTTTTATTTGGT-TAATACCATTTTTCTCTCAT--------------------GTGAATAT--------------------------TG-G-------CACG--TGATCGGTAATT-GACAAAT--TAA-AGCGTGAAAAC---TTATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagaca----TAT------------GTA--TA--------TG-C------TCATGACAGCA--CATGCATGCGACTGTTTC-AA-CTACATCACCCTTTTT--AG--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATG-GA------CATG--TGATCAGTAATT-GATCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 00000000000000000000000000000000000000000000000000000 33333333333333333 111 222222222 3333333333333333333 11111 666666666666666666 11111111111 2222222222222222222222222222 55555555555555555555555555555555555555555555555555555 11111 333333333333333333333333 111111 222222222 111111 222 11
lowQualScore : 3 2222222 5 1 3 11111111111111111111111111111111111111111111111111111 333 0 0 555 6666 33 77777 33 33333333333333333 2 11 999 5555 0 3 0 000000000 3 22 3 8888 2 1111111111111111111 00000 5 777777777777777777 4 99999999999 55 1 55 4444444444444444444444444444 66 77777777777777777777777777777777777777777777777777777 44444 999 2 0 6 3 0 777777777777777777777777 0 2 0 3 000000 444444444 3 000000 55 3 555 0 1 777 888 5 5 0 1 88
lowQualScore : . ....... . . . ..................................................... ... . . ... .... .. ..... .. ................. . .. ... .... . . . ......... . .. . .... . ................... ..... . .................. . ........... .. . .. ............................ .. ..................................................... ..... ... . . . . . ........................ . . . . ...... ......... . ...... .. . ... . . ... ... . . . . ..
lowQualScore : 2 5555555 0 0 9 99999999999999999999999999999999999999999999999999999 000 5 4 444 5555 99 11111 99 77777777777777777 9 88 222 7777 2 3 2 000000000 6 00 6 5555 5 0000000000000000000 00000 3 888888888888888888 0 00000000000 55 0 55 4444444444444444444444444444 99 00000000000000000000000000000000000000000000000000000 22222 888 6 4 4 6 5 111111111111111111111111 5 0 5 6 555555 777777777 6 555555 00 6 555 7 1 111 888 7 7 1 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGA-----CA--GT-----------G--T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNNTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGA-----CA--GT-----------G--T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--C----TGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
gi|1 : ATA-ACAATAATAATA-TACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATAATTGGACAGGGTCC-------ATGTGCC-CATCAC----------------------A----GG-------------GATCTGGTCCACA---GATT----TGGATACCATCCAGTATCA--TCAGG-----TA--GT-----------A--T------T-T-TATTAGGACTTA--TAA-ATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA----------------------CAAAAA-----AGAGA----C-------------TGTGAC-----------CT--GAT-GA--TGTCTTTAAAACA-----CA--C----------AACTGAT--CTACC----A--C----TGTTTCAAATGAAGTGCA--TTGTTAAATATG-TAAATACTCATGACAACACACAAG--TATGTTTGTTTCAAA-CAGTATCACTTT-CTC--CA--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TG-GA------CCTG--TGATCGG-AAAT-CAACCAATCGTAACACC--AGAGTT---TTATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacCAGATACATACATGAT-------AATATTGACCGCTAAAA--TAAGA-----CA--GT-----------A--C--ATTTTAT-TATTATGACTTA--TAA-ATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTT-------------------AGCAAT-----TCAGA--------------------TGAC-----------GTCAGAGTAAGCTATTCT----ACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACTG-A--C----TGT------------GCA--TT--------GG-CGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TACAAGTATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aataGACGAATATTA--TCAAA-----CA--GT-----------AAAT--GTTTCAA-TATTATGACTT---TTA-ATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTTC-------------------CTAAAT-----TGAGACGATG-------------T-CCAC-----------AT--AAATAA--TATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatgg----------AACTGTT--TTAT-----ATAC----TGTCTTT--------GCA--TC--------TGGCAA---GTCTTGCCA-----CAC---TGTGTTTGTTTTAAA-CAATATTACCTTTCTC--AG--------------------GTTAATATCAC-GTTT------TAT--------------------CACGATTGATTGG-TAATT-GACCAATCGCAACAGC--GGATTT---TTATTT-ATC-TTATAATAaatgcaattgatgtttgacg
gi|13 : A----A-------------T-TAAT-----------GT--TAGCAA--TGTTT--------------G--T----------AACTGTT--TTAT-----A--CAGACTAT------------GTA--CT--------GA-TGA---TTCTTGACA-----TAC-----------TTCC------ATAT---TTTTAAC---------------------------ACTATTAC-TGTC------TATG-CA-----TG-GC------CACA--TAATAGC-CAA-TCGAACAGTCGTATCAAC--TGAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : ACA-----CATG--TGTGTTTATCTCAAA-CAATATCACTTTTCCC--AGTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TG-GA------CACA--TGATCAG-CAcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---ACCGACACTA--TAAGA-----CA--GT-----------AACT--ATTTTAT-CCCTATGACTT---TCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAGT--CC-GTT---TAATTTTACTTT-------------------CTTAAT-----TTAGATAGCG-------------T-TAAC-----------AT--AAACAA--
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC-------CA-A-GGT--CG---A----GATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGACCGATATCACCTCTGT-----AA--AT-----------G-------CTTAT-TATTACG---T---CAC-ATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAGTTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT------------------------------AGTGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGACCGATTTTA--TCAAA-----CA--GTAA---------G--T--GTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTTTTATTTTGTA-CAATATGACTTTCTTC---G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TG-GA------AGTG--TGATTGA-TAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgTACAGTTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTACCCTGGT-CACA-TGCTGTG---A----AGTGAATATCCCAAAGATCccc
gi|2 : agtaaataGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC------GT-CT-C-AGC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCT-CATTA--TCAGT-----CA--ATAAATATAAAAAG--T--GTTTCATATATTTC-ATTT---TA-----------TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TTT-------------------CCAAAT-----
gi|2 : tttttatcAATATATGAAACACTTTTTATATTTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAAGGT-CA-ACGGC--TG---A----GACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGACCGATATCA--TC-------------------------G--T--GTTTTAT-TACTATGAATA---TGA-GTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTCT-------------------TTAAAT-----TAAGA--------------------TAAC-----------GT--AGTCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----G--C----TGT------------GCA--TT--------TG-CTG---TTATTGACA-----CATA--TGCGTCTA----GAA-CAGTATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTT------TATC-AG-----TT-GA------CACT--TGGTCGGTTAAT--GACCAATAGAAACAGC--GGAAAT---CTGTGA-GTC-ATATAATAAAGCTA--AATATgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGATCTACATCA--TTAGA-----CA--GTAA---------G--T--GTTTTAC-T
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGACTGATGGCG--TCAAA-----CAATAT-----------G--T--GTTTTAG-TATTACAGCTTA--TAA-ATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGTTTGTTTTAAAACAATACCCATTATCTG--AG--------------------GTCAATATCCC-TTTT------TATT-GG-----TG-GA------CACG--TGATTGG-TAA-TCAATTAATCATGACAGC--GGGAAT---TTGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGACTGATATCA--TTAGA-----CA--GT-----------TATT--ATTTTAT-TATTAC--TTT---TAA-ATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTTT-------------------CTAAAT-----TTAAG----ACGACAC-------T-TGAC-----------GT--AAACAA--TGTTTG----ACGT----CT--T----------AACTGAT--TTATTATTAA--C----TAT------------GCA--TT--------GA-CAA---TCTTTGATA-----CAT------ATTTGTTTTGAA-C------------------------------------------AATATCAT-TTTC------TATT-GG-----TG-GACAATGTCATG--TGATCAG-TAA-TCAACCAATTGCAACAGC--AGAAAT---TTATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAGTTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGAGGTGCA-A-GGC--CG---A----AGTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGACAGATATCA--ACAAA-----CA--GT-----------G-----ATTTT-T-TATTAGGACTTGAGTAA-ATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTTT-------------------CTTAAT-----TTAGA----AAATG---------T-TGACTTAAATGTAATGT--AACCAA--TGTTTG----ACAT----CA--T----------GACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA---ATACAA--TCAGA-----CA--GT-----------A--TATGTTTCAT-TTTTACAACT---------------GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTTTAAAATTAAGATTACATCAACTAAAT-----T--GA----T-------------T-TGAC-----------AT--AATCAA--TATTTT----ATGT----CAATT----------ACCAGTC--CTAT-----A--C----TAT------------GTG--AA--------TG-TGA---TCCTTGACA-----CATG--TGCATTTATTTCAAA-CAATATCATTTTTTTC--AG--------------------GTGAATATCTC-TTTC------TATC--------TGCGA------CACC--T--TTG----ACT-GCCCAATTGTAA-AGC--TGAAAT---T
gi|7 : TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------ATA----------------------------------------CGAATACCCCATAGA--------A-A---GATT----TGGATACTGACCAATATCA--CTTGAAAATGAA--AT-----------G--T--GTTTTAT-TTTTATGACTTG--TAA-------------ATTGCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TTT-------------------ACAAATCAACATGATA----ACAACACAAACAATT-TAAC-----------AT--AATCAA--TGTTTT----ACAT----CA--A----------AAGTGCT--ATAT-----A----------------------GGAATTT--------TG-CA-----TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGTTTTATTTGGT-TAATACCATTTTTCTCTCAT--------------------GTGAATAT--------------------------TG-G-------CACG--TGATCGG-TAATT-GACAAAT--TAA-AGCGTGAAAAC---TTATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagaca----TAT------------GTA--TA--------TG-C------TCATGACAGCA--CATGCATGCGACTGTTTC-AA-CTACATCACCCTTTTT--AG--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATG-GA------CATG--TGATCAG-TAATT-GATCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000 44444444444444444444 111 222222222 3333333333333333333 11111 666666666666666666 11111111111 2222222222222222222222222222 5555555555555555555555555555555555555555555555555 11111 333333333333333333333333 111111 222222222 111111 222 11
lowQualScore : 3 3333 1 1 5 1 3 11111111111111111111111111111111111111111111111111111 333 0 0 555 6666 33 33 00000000000000000000 2 11 999 3 33333 0 000000000 3 22 3 8888 2 1111111111111111111 00000 5 777777777777777777 4 99999999999 55 1 55 4444444444444444444444444444 66 8888888888888888888888888888888888888888888888888 44444 999 2 0 6 3 0 777777777777777777777777 0 2 0 3 000000 444444444 3 000000 55 3 555 0 1 777 888 5 5 0 1 88
lowQualScore : . .... . . . . . ..................................................... ... . . ... .... .. .. .................... . .. ... . ..... . ......... . .. . .... . ................... ..... . .................. . ........... .. . .. ............................ .. ................................................. ..... ... . . . . . ........................ . . . . ...... ......... . ...... .. . ... . . ... ... . . . . ..
lowQualScore : 2 8888 0 7 0 0 9 99999999999999999999999999999999999999999999999999999 000 5 4 444 5555 99 99 99999999999999999999 9 88 222 3 99999 2 000000000 6 00 6 5555 5 0000000000000000000 00000 3 888888888888888888 0 00000000000 55 0 55 4444444444444444444444444444 99 2222222222222222222222222222222222222222222222222 22222 888 6 4 4 6 5 111111111111111111111111 5 0 5 6 555555 777777777 6 555555 00 6 555 7 1 111 888 7 7 1 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--CTGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--CTGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
gi|1 : ATA-ACAATAATAATAT-ACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATAATTGGACAGGGTCC-------ATGTGCC-CATCAC----------------------A----GG-------------GATCTGGTCCACA---GATT----TGGATACCATCCAGTATCA--TCAGGTA--GT-----------A-----T------T-T-TATTAGGACTTA--TAA-ATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA----------------------CAAAAA-----AGAGA----C-------------TGTGAC-----------CT--GAT-GA--TGTCTTTAAAACA-----CA--C----------AACTGAT--CTACC----A--CTGTTTCAAATGAAGTGCA--TTGTTAAATATG-TAAATACTCATGACAACACACAAG--TATGTTTGTTTCAAA-CAGTATCACTTT-CTC--CA--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TG-GA------CCTG--TGATCGG-AAAT-CAACCAATCGTAACACC--AGAGTT---TTATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacCAGATACATACATGAT-------AATATTGACCGCTAAAA--TAAGACA--GT-----------A-----C--ATTTTAT-TATTATGACTTA--TAA-ATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTT-------------------AGCAAT-----TCAGA--------------------TGAC-----------GTCAGAGTAAGCTATTCT----ACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACTG-A--CTGT------------GCA--TT--------GG-CGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TACAAGTATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aataGACGAATATTA--TCAAACA--GT-----------AAA---T--GTTTCAA-TATTATGACTT---TTA-ATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTTC-------------------CTAAAT-----TGAGACGATG-------------T-CCAC-----------AT--AAATAA--TATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatgg----------AACTGTT--TTAT-----ATACTGTCTTT--------GCA--TC--------TGGCAA---GTCTTGCCA-----CAC---TGTGTTTGTTTTAAA-CAATATTACCTTTCTC--AG--------------------GTTAATATCAC-GTTT------TAT--------------------CACGATTGATTGG-TAATT-GACCAATCGCAACAGC--GGATTT---TTATTT-ATC-TTATAATAaatgcaattgatgtttgacg
gi|13 : A----A-------------T-TAAT-----------GT--TAGCAA--TGTTT--------------G--T----------AACTGTT--TTATACAG-A--CTAT------------GTA--CT--------GA-TGA---TTCTTGACA-----TAC-----------TTCC------ATAT---TTTTAAC---------------------------ACTATTAC-TGTC------TATG-CA-----TG-GC------CACA--TAATAGC-CAA-TCGAACAGTCGTATCAAC--TGAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : ACA-----CATG--TGTGTTTATCTCAAA-CAATATCACTTTTCCC--AGTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TG-GA------CACA--TGATCAG-CAcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---ACCGACACTA--TAAGACA--GT-----------AAC---T--ATTTTAT-CCCTATGACTT---TCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAGT--CC-GTT---TAATTTTACTTT-------------------CTTAAT-----TTAGATAGCG-------------T-TAAC-----------AT--AAACAA--
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC-------CA-A-GGT--CG---A----GATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGACCGATATCACCTCTGTAA--AT-----------G----------CTTAT-TATTACG---T---CAC-ATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAGTTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT------------------------------AGTGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGACCGATTTTA--TCAAACA--GTAA---------G-----T--GTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTTTTATTTTGTA-CAATATGACTTTCTTC---G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TG-GA------AGTG--TGATTGA-TAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgTACAGTTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTACCCTGGT-CACA-TGCTGTG---A----AGTGAATATCCCAAAGATCccc
gi|2 : agtaaataGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC------GT-CT-C-AGC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCT-CATTA--TCAGTCA--ATAAATATAAAAAG-----T--GTTTCATATATTTC-ATTT---TA-----------TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TTT-------------------CCAAAT-----
gi|2 : tttttatcAATATATGAAACACTTTTTATATTTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAAGGT-CA-ACGGC--TG---A----GACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGACCGATATCA--TC--------------------G-----T--GTTTTAT-TACTATGAATA---TGA-GTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTCT-------------------TTAAAT-----TAAGA--------------------TAAC-----------GT--AGTCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----G--CTGT------------GCA--TT--------TG-CTG---TTATTGACA-----CATA--TGCGTCTA----GAA-CAGTATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTT------TATC-AG-----TT-GA------CACT--TGGTCGGTTAAT--GACCAATAGAAACAGC--GGAAAT---CTGTGA-GTC-ATATAATAAAGCTA--AATATgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGATCTACATCA--TTAGACA--GTAA---------G-----T--GTTTTAC-T
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGACTGATGGCG--TCAAACAATAT-----------G-----T--GTTTTAG-TATTACAGCTTA--TAA-ATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGTTTGTTTTAAAACAATACCCATTATCTG--AG--------------------GTCAATATCCC-TTTT------TATT-GG-----TG-GA------CACG--TGATTGG-TAA-TCAATTAATCATGACAGC--GGGAAT---TTGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGACTGATATCA--TTAGACA--GT-----------TAT---T--ATTTTAT-TATTAC--TTT---TAA-ATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTTT-------------------CTAAAT-----TTAAG----ACGACAC-------T-TGAC-----------GT--AAACAA--TGTTTG----ACGT----CT--T----------AACTGAT--TTATTATTAA--CTAT------------GCA--TT--------GA-CAA---TCTTTGATA-----CAT------ATTTGTTTTGAA-C------------------------------------------AATATCAT-TTTC------TATT-GG-----TG-GACAATGTCATG--TGATCAG-TAA-TCAACCAATTGCAACAGC--AGAAAT---TTATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAGTTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGAGGTGCA-A-GGC--CG---A----AGTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGACAGATATCA--ACAAACA--GT-----------G--------ATTTT-T-TATTAGGACTTGAGTAA-ATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTTT-------------------CTTAAT-----TTAGA----AAATG---------T-TGACTTAAATGTAATGT--AACCAA--TGTTTG----ACAT----CA--T----------GACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA---ATACAA--TCAGACA--GT-----------A-----TATGTTTCAT-TTTTACAACT---------------GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTTTAAAATTAAGATTACATCAACTAAAT-----T--GA----T-------------T-TGAC-----------AT--AATCAA--TATTTT----ATGT----CAATT----------ACCAGTC--CTAT-----A--CTAT------------GTG--AA--------TG-TGA---TCCTTGACA-----CATG--TGCATTTATTTCAAA-CAATATCATTTTTTTC--AG--------------------GTGAATATCTC-TTTC------TATC--------TGCGA------CACC--T--TTG----ACT-GCCCAATTGTAA-AGC--TGAAAT---T
gi|7 : TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------ATA----------------------------------------CGAATACCCCATAGA--------A-A---GATT----TGGATACTGACCAATATCA--CTTGAAA--AT-----------GAAATGT--GTTTTAT-TTTTATGACTTG--TAA-ATT------------GCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TTT-------------------ACAAATCAACATGATA----ACAACACAAACAATT-TAAC-----------AT--AATCAA--TGTTTT----ACAT----CA--A----------AAGTGCT--ATAT-----A------------------GGAATTT--------TG-CA-----TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGTTTTATTTGGT-TAATACCATTTTTCTCTCAT--------------------GTGAATAT--------------------------TG-G-------CACG--TGATCGG-TAATT-GACAAAT--TAA-AGCGTGAAAAC---TTATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagacaTAT------------GTA--TA--------TG-C------TCATGACAGCA--CATGCATGCGACTGTTTC-AA-CTACATCACCCTTTTT--AG--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATG-GA------CATG--TGATCAG-TAATT-GATCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000 44444444444444444444 111 222222222 3333333333333333333 11111 666666666666666666 11111111111 2222222222222222222222222222 5555555555555555555555555555555555555555555555555 11111 333333333333333333333333 111111 222222222 111111 222 11
lowQualScore : 3 3333 1 1 5 1 3 11111111111111111111111111111111111111111111111111111 333 0 0 555 6666 33 33 00000000000000000000 2 11 999 3 33333 0 000000000 3 22 3 8888 2 1111111111111111111 00000 5 777777777777777777 4 99999999999 55 1 55 4444444444444444444444444444 66 8888888888888888888888888888888888888888888888888 44444 999 2 0 6 3 0 777777777777777777777777 0 2 0 3 000000 444444444 3 000000 55 3 555 0 1 777 888 5 5 0 1 88
lowQualScore : . .... . . . . . ..................................................... ... . . ... .... .. .. .................... . .. ... . ..... . ......... . .. . .... . ................... ..... . .................. . ........... .. . .. ............................ .. ................................................. ..... ... . . . . . ........................ . . . . ...... ......... . ...... .. . ... . . ... ... . . . . ..
lowQualScore : 2 8888 0 7 0 0 9 99999999999999999999999999999999999999999999999999999 000 5 4 444 5555 99 99 99999999999999999999 9 88 222 3 99999 2 000000000 6 00 6 5555 5 0000000000000000000 00000 3 888888888888888888 0 00000000000 55 0 55 4444444444444444444444444444 99 2222222222222222222222222222222222222222222222222 22222 888 6 4 4 6 5 111111111111111111111111 5 0 5 6 555555 777777777 6 555555 00 6 555 7 1 111 888 7 7 1 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--CTGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--CTGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
gi|1 : ATA-ACAATAATAATAT-ACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATAATTGGACAGGGTCC-------ATGTGCC-CATCAC----------------------A----GG-------------GATCTGGTCCACA---GATT----TGGATACCATCCAGTATCA--TCAGGTA--GT-----------A-----T------T-T-TATTAGGACTTA--TAA-ATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA----------------------CAAAAA-----AGAGA----C-------------TGTGAC-----------CT--GAT-GA--TGTCTTTAAAACA-----CA--C----------AACTGAT--CTACC----A--CTGTTTCAAATGAAGTGCA--TTGTTAAATATG-TAAATACTCATGACAACACACAAG--TATGTTTGTTTCAAA-CAGTATCACTTT-CTC--CA--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TG-GA------CCTG--TGATCGG-AAAT-CAACCAATCGTAACACC--AGAGTT---TTATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacCAGATACATACATGAT-------AATATTGACCGCTAAAA--TAAGACA--GT-----------A-----C--ATTTTAT-TATTATGACTTA--TAA-ATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTT-------------------AGCAAT-----TCAGA--------------------TGAC-----------GTCAGAGTAAGCTATTCT----ACGTAATCCA--TGTTTATTGCCAATTGTTTCCGATACTG-A--CTGT------------GCA--TT--------GG-CGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TACAAGTATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aataGACGAATATTA--TCAAACA--GT-----------AAA---T--GTTTCAA-TATTATGACTT---TTA-ATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTTC-------------------CTAAAT-----TGAGACGATG-------------T-CCAC-----------AT--AAATAA--TATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatgg----------AACTGTT--TTAT-----ATACTGTCTTT--------GCA--TC--------TGGCAA---GTCTTGCCA-----CAC---TGTGTTTGTTTTAAA-CAATATTACCTTTCTC--AG--------------------GTTAATATCAC-GTTT------TAT--------------------CACGATTGATTGG-TAATT-GACCAATCGCAACAGC--GGATTT---TTATTT-ATC-TTATAATAaatgcaattgatgtttgacg
gi|13 : A----A-------------T-TAAT-----------GT--TAGCAA--TGTTT--------------G--T----------AACTGTT--TTATACAG-A--CTAT------------GTA--CT--------GA-TGA---TTCTTGACA-----TAC-----------TTCC------ATAT---TTTTAAC---------------------------ACTATTAC-TGTC------TATG-CA-----TG-GC------CACA--TAATAGC-CAA-TCGAACAGTCGTATCAAC--TGAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : ACA-----CATG--TGTGTTTATCTCAAA-CAATATCACTTTTCCC--AGTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TG-GA------CACA--TGATCAG-CAcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---ACCGACACTA--TAAGACA--GT-----------AAC---T--ATTTTAT-CCCTATGACTT---TCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAGT--CC-GTT---TAATTTTACTTT-------------------CTTAAT-----TTAGATAGCG-------------T-TAAC-----------AT--AAACAA--
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC-------CA-A-GGT--CG---A----GATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGACCGATATCACCTCTGTAA--AT-----------G----------CTTAT-TATTACG---T---CAC-ATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAGTTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT------------------------------AGTGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGACCGATTTTA--TCAAACA--GTAA---------G-----T--GTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTTTTATTTTGTA-CAATATGACTTTCTTC---G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TG-GA------AGTG--TGATTGA-TAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgTACAGTTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTACCCTGGT-CACA-TGCTGTG---A----AGTGAATATCCCAAAGATCccc
gi|2 : agtaaataGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC------GT-CT-C-AGC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCT-CATTA--TCAGTCA--ATAAATATAAAAAG-----T--GTTTCATATATTTC-ATTT---TA-----------TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TTT-------------------CCAAAT-----
gi|2 : tttttatcAATATATGAAACACTTTTTATATTTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAAGGT-CA-ACGGC--TG---A----GACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGACCGATATCA--TC--------------------G-----T--GTTTTAT-TACTATGAATA---TGA-GTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTCT-------------------TTAAAT-----TAAGA--------------------TAAC-----------GT--AGTCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----G--CTGT------------GCA--TT--------TG-CTG---TTATTGACA-----CATA--TGCGTCTA----GAA-CAGTATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTT------TATC-AG-----TT-GA------CACT--TGGTCGGTTAAT--GACCAATAGAAACAGC--GGAAAT---CTGTGA-GTC-ATATAATAAAGCTA--AATATgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGATCTACATCA--TTAGACA--GTAA---------G-----T--GTTTTAC-T
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGACTGATGGCG--TCAAACAATAT-----------G-----T--GTTTTAG-TATTACAGCTTA--TAA-ATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGTTTGTTTTAAAACAATACCCATTATCTG--AG--------------------GTCAATATCCC-TTTT------TATT-GG-----TG-GA------CACG--TGATTGG-TAA-TCAATTAATCATGACAGC--GGGAAT---TTGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGACTGATATCA--TTAGACA--GT-----------TAT---T--ATTTTAT-TATTAC--TTT---TAA-ATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTTT-------------------CTAAAT-----TTAAG----ACGACAC-------T-TGAC-----------GT--AAACAA--TGTTTG----ACGT----CT--T----------AACTGAT--TTATTATTAA--CTAT------------GCA--TT--------GA-CAA---TCTTTGATA-----CAT------ATTTGTTTTGAA-C------------------------------------------AATATCAT-TTTC------TATT-GG-----TG-GACAATGTCATG--TGATCAG-TAA-TCAACCAATTGCAACAGC--AGAAAT---TTATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAGTTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGAGGTGCA-A-GGC--CG---A----AGTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGACAGATATCA--ACAAACA--GT-----------G--------ATTTT-T-TATTAGGACTTGAGTAA-ATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTTT-------------------CTTAAT-----TTAGA----AAATG---------T-TGACTTAAATGTAATGT--AACCAA--TGTTTG----ACAT----CA--T----------GACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA---ATACAA--TCAGACA--GT-----------A-----TATGTTTCAT-TTTTACAACT---------------GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTTTAAAATTAAGATTACATCAACTAAAT-----T--GA----T-------------T-TGAC-----------AT--AATCAA--TATTTT----ATGT----CAATT----------ACCAGTC--CTAT-----A--CTAT------------GTG--AA--------TG-TGA---TCCTTGACA-----CATG--TGCATTTATTTCAAA-CAATATCATTTTTTTC--AG--------------------GTGAATATCTC-TTTC------TATC--------TGCGA------CACC--T--TTG----ACT-GCCCAATTGTAA-AGC--TGAAAT---T
gi|7 : TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------ATA----------------------------------------CGAATACCCCATAGA--------A-A---GATT----TGGATACTGACCAATATCA--CTTGAAA--AT-----------GAAATGT--GTTTTAT-TTTTATGACTTG--TAA-ATT------------GCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TTT-------------------ACAAATCAACATGATA----ACAACACAAACAATT-TAAC-----------AT--AATCAA--TGTTTT----ACAT----CA--A----------AAGTGCT--ATAT-----A------------------GGAATTT--------TG-CA-----TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGTTTTATTTGGT-TAATACCATTTTTCTCTCAT--------------------GTGAATAT--------------------------TG-G-------CACG--TGATCGG-TAATT-GACAAAT--TAA-AGCGTGAAAAC---TTATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagacaTAT------------GTA--TA--------TG-C------TCATGACAGCA--CATGCATGCGACTGTTTC-AA-CTACATCACCCTTTTT--AG--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATG-GA------CATG--TGATCAG-TAATT-GATCAATC
blockSeqs : T CTGC T T T T C ATTTTGTAAATGTGATAATTTACCCTGGTCACATGCTGTGAAGT CAT CAT ATGC CC AT AAATATAAAAAGT A TG GAG C TTTTT AAT A TG G AAAT C AAAATTAAGATTACATCAA CAACA C ACAACACAAACAAT . TTAAATGTAAT CA G GC TACGTAATCCATGTTTATTGCC TC ATACTGTCTTTGCATCTGGCAAG GCA GCA T A A AGTGGAATACCAGCTGTCACAG A T TGTGGG GGGTGCCA C CAATGT AT T TT C GTG TTA T T G GT
blockSeqs : T CACT T T . A C CAATGGAATATTCGTCTCAGCCGTTGACCTTGGC CCC . . . . GAAATGT . TG A . GTTT AC . TA . T C . . G ACGACAC . . . A . TATGTCAATT . TATTAACTATGCATTGACAAT . G T A . TCAT C . . TGGG . . . . TC C G . . . A
blockSeqs : T AAAG A T . C C GTATGTGACATTCGCCAAGGTCAACGGCTGAGAC CAC . . . . AAAT . TG A . TCCT AA . AG . T C . . T CGATG . . . G . TACGTCAT . ACTGACTGTGCATTGGCGAT . G G G . AG C . . GCA . . . . TT C T . . .
blockSeqs : T . C C CTAAGTAATATTCACAGAGGTGCAAGGCCGAAGT TCC . . . . AACT . CG G . GTCT GA . GA . T C . . A TAGCG . . . A . GACGTCTT . ACAGACTATGTACTGATGAT . A C G . AG A . . TGG . . . . TC C G . . .
blockSeqs : C . A C TATGTGATATACACCAAGGTCGAGAT TCC . . . . AAGT . TG . . TTCT AA . TA . C C . . T AAATG . . . T . GACATCAT . GCTGTGCATTTGCTGT . G T A . AG A . . CAG . . . . TC C G . . .
blockSeqs : . C C CGGCATTAGT CCC . . . . AAGT . CA . . GTCT TA . GA . T C . . T A . . . A . TACATCAA . ACTATGTGAATGTGAT . G C G . AG A . . TGG . . . . CT C A . . .
blockSeqs : . A . ATATAC AT . . . . TATT . GG . . GTTT TA . CT . A C . . G T . . . C . GT . AGGAATTTTGCA . A C A . AG A . . TGG . . . . TT . T .
blockSeqs : . . . . . ATAT . CA . . TTCT TA . AA . T . . . . . . . . T . . G C G . G A . . C . . . . TT .
blockSeqs : . . . . AC . TG . . T . . GT . . . . . . . . . T . . . . . . . A . . . . . . . T
blockSeqs : . . . . GT . C . . . . . TT . . . . . . . C . . . . . . .
blockSeqs : . . . . GT . C . . . . .
blockSeqs : . . . . G .
blockSeqs : . . G .
blockSeqCons : CCC AAGT**************** *** NA******* GAT*************** NACGTCAT******************** ACTGACTNTGCATTGGCGAT***************************** *****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GT-----------G-----T--GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGA----A-------------T-TGAC-----------GT--AANCAA--TGTTTT----ACGT----CA--T----------AACTGTT--CTAT-----A--CTGT------------GCA--TT--------TG-CGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCA--TCAGACA--GTAAGT----------------GTTTTAT-TATTACGACTT---TAA-ATTTCT-GTTGTATTGCTAAAATNA-------G-AAANNTTTCC-ATT---TAATATCACTTT-------------------CTAAAT-----TNAGAGAT---------------T-TGAC-----------GT--AANCAA--TGTTTNACGTCAT--------------------AACTGTT--CTATACTGACTNTGCATTGGCGAT-----------------------------TCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000 222222222222222 111 111111111 111111 8888888888888888888888888888888888 11111111111 1111111111111 222222222222 222222222222222222 333333333333333333333333 111111 222222222 111111 222 11
lowQualScore : 3 3333 1 1 5 1 3 11111111111111111111111111111111111111111111111111111 333 0 0 555 6666 000000000000000 2 11 999 3 1 33333 0 999999999 3 444 3 8888 2 111111 3 8888 1 5555555555555555555555555555555555 4 1 99999999999 1 3333333333333 66 5 5 66 444444444444 555555555555555555 88888 999 2 0 6 3 0 777777777777777777777777 0 2 0 3 000000 444444444 3 000000 55 3 555 0 1 777 888 5 5 0 1 88
lowQualScore : . .... . . . . . ..................................................... ... . . ... .... ............... . .. ... . . ..... . ......... . ... . .... . ...... . .... . .................................. . . ........... . ............. .. . . .. ............ .................. ..... ... . . . . . ........................ . . . . ...... ......... . ...... .. . ... . . ... ... . . . . ..
lowQualScore : 2 8888 0 7 0 0 9 99999999999999999999999999999999999999999999999999999 000 5 4 444 5555 777777777777777 9 88 222 3 1 99999 2 777777777 6 333 6 5555 5 555555 0 5555 0 8888888888888888888888888888888888 0 4 00000000000 0 6666666666666 99 0 0 99 999999999999 888888888888888888 33333 888 6 4 4 6 5 111111111111111111111111 5 0 5 6 555555 777777777 6 555555 00 6 555 7 1 111 888 7 7 1 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCATCAGACAGT---------AA---GTGTTTTAT-TATTACGACTT---T-AAATTTCT-GTTGTATTGCTAAAATA------A-G-AAANNTTTCC-ATT---TAATATCACTT------TCTAAAT----TNA----G--A----------------G------AT-T-TGAC-----------GTAANCAATGTTTN----ACGTCA--TAACTGTT--CTA-T-A--CTGACTN--------TGCAT-TG--------GCGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
Reference ( family-2692 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATAATANNANTNTTACAGTTATTGTCTGATGATG-AGGTCAATATCCAAATNTATGGACCTGATNT-------ATGTGAC-ATTCAC---GGT-CA-A-GGC--CG---A----GGCGAATATCCCATAGATCAGGTCCATA---GATT----TGGATATTGACCGATATCATCAGACAGT---------AA---GTGTTTTAT-TATTACGACTT---T-AAATTTCT-GTTGTATTGCTAAAATN------A-G-AAANNTTTCC-ATT---TAATATCACTT------TCTAAAT----TNA----G--A----------------G------AT-T-TGAC-----------GTAANCAATGTTTN----ACGTCA--TAACTGTT--CTA-T-A--CTGACTN--------TGCAT-TG--------GCGA---TTCTTGACA-----CATG--TGCGTTTGTTTCGAA-CAATATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTC------TATC-GG-----TG-GA------CACG--TGATCGG-TAATTCGACCAATCGTAACAGC--GGAAAT---TTATAA-ATC-ATATAATAAANCTAGTAATAT
gi|1 : ATA-ACAATAATAATAT-ACAGTAGTTGTCCAATGACA-AGGTCAATATCCAAATAATTGGACAGGGTCC-------ATGTGCC-CATCAC----------------------A----GG-------------GATCTGGTCCACA---GATT----TGGATACCATCCAGTATCATCAGGTAGT---------A---------TT-T-TATTAGGACTTA--T-AAATTTCT-GTTGTATTTGTAAAATATGGAGCA-G-AACATTTTCA-AAA---CAAAGTCAA---------CAAAA------AA----G--A----------------G------AC-TGTGAC-----------CTGAT-GATGTCTTTAAAACA-CA--CAACTGAT--CTA-CCA--CTGTTTCAAATGAAGTGCAT-TGTTAAATATGTAAATACTCATGACAACACACAAG--TATGTTTGTTTCAAA-CAGTATCACTTT-CTC--CA--------------------GCGA-TATCAC-TTTC------TCAA-AG-----TG-GA------CCTG--TGATCGG-AAAT-CAACCAATCGTAACACC--AGAGTT---TTATAA-GTC-ATATAA-AAATC
gi|10 : ttttttatgcataaagagatggaatgacattattttaaacttttggtaccagttgaacattttacatgtacatcacCAGATACATACATGAT-------AATATTGACCGCTAAAATAAGACAGT---------A-----CATTTTAT-TATTATGACTTA--T-AAATGTTT-CCTGTGATGTTAAAATA------C-G-AAATGTTTCC-ATT---TAATATCACTTTAGCAATTCAGATGACGTCA----G--A----------------GTAAGCTAT-T-CTAC-----------GTAATCCATGTTTA----TTGCC----AATTGTTTCCGA-T-A--CTGACTG--------TGCAT-TG--------GCGA---TTATCGACaaacatatacataggtataacataaagattgtaaaata
gi|11 : TACAAGTATTGTCTATTGATG-AGTCTAATATCCAACTTTATAGGCCTTATGT-------ATGGGAC-
gi|11 : aataGACGAATATTATCAAACAGT---------AA---ATGTTTCAA-TATTATGACTT---T-TAATTTTTTGTTGTATTGCCAAAATA------A-G-AAATATTCCC-ATT---TAATATAACTT------CCTAAAT----TGA----G--AC---------------G------ATGT-CCAC-----------ATAAATAATATgaatattatcaaacagtaaatgtttcaatattatgacttttaattttttgttgtattgccaaaataagaaatattcccatttaatataacttcctaaattgagacgatgtccacataaataatataatgcaattgatgtttgacg
gi|12 : aatatacaagtattgtctattgatgagtctaatatccaactttataggccttatgtatggAACTGTT--TTA-T-ATACTGTCTT--------TGCATCTG--------GCAA---GTCTTGCCA-----CAC---TGTGTTTGTTTTAAA-CAATATTACCTTTCTC--AG--------------------GTTAATATCAC-GTTT------TAT--------------------CACGATTGATTGG-TAATT-GACCAATCGCAACAGC--GGATTT---TTATTT-ATC-TTATAATAaatgcaattgatgtttgacg
gi|13 : -T-TAAT-----------GTTAGCAATGTTTG------------TAACTGTT--TTA-T-A--CAGACTA--------TGTAC-TG--------ATGA---TTCTTGACA-----TAC-----------TTCC------ATAT---TTTTAAC---------------------------ACTATTAC-TGTC------TATG-CA-----TG-GC------CACA--TAATAGC-CAA-TCGAACAGTCGTATCAAC--TGAAATTTATTATAA-AAC-ATA-AATAAtatttttaaactctactatcaatatcta
gi|14 : aaACA-----CATG--TGTGTTTATCTCAAA-CAATATCACTTTTCCC--AGTGGAATACCAGCTGTCACAGGTGACTATCACTTTTT------TACT-GG-----TG-GA------CACA--TGATCAG-CAcatccttaattt
gi|15 : tataatactggttaaaatgcagagtaggattggcaaaatatgttaatacttgtgacagcacAGGTCAATA---GATT----T--ATA---ACCGACACTATAAGACAGT---------AA---CTATTTTAT-CCCTATGACTT---TCACATTCCT-GTTACATAACTAAATTA------ATG-CAAAG--TCC-GTT---TAATTTTACTT------TCTTAAT----TTA----GATA----------------G------CG-T-TAAC-----------ATAAACAA
gi|16 : aGACCTAAT-T-------ATGTGAT-ATACAC-------CA-A-GGT--CG---A----GATACATGTAT-ATATATTAGGTCCATA---TATT----AAGATATTGACCGATATCACC--TCTGT---------AA---ATG-CTTAT-TATTACG---T---C-ACATGTCT-GTTGTGTTGATAAGGT-----------AAAGATTTCC-cttactgtatacaacgt
gi|17 : ATATAATACTGCGTATACAGTTATTGTCTGATGACG-AGGTCAATATCTTCATATAGTGAC-TGACC------------GGC-ATT------------------------------AGTGAATATCATATAGAACAGGTCAATA---AATT----TGGATATTGACCGATTTTATCAAACAGT---------AA---GTGTTTTAT-TAcccc
gi|18 : cCA-----CAGG--TAGTTTTATTTTGTA-CAATATGACTTTCTTC---G--------------------GTAAATAT-AT-TTTCTGTGGGTATTGGG-----TG-GA------AGTG--TGATTGA-TAATT-GACTTATCATAAC
gi|19 : gaatatgtaaaatactcatgtcaacgTACAGTTATTGTCTGATGATG-ATGTCGGTGT-CAAGTCTATGGAC--AATATTTTGTAAATGTGATAATTTACCCTGGT-CACA-TGCTGTG---A----AGTGAATATCCCAAAGATCccc
gi|2 : agtaaataGATGATATCGGTCAAAATCCAAATCTATGAATCTGAACA-------ATGGAAT-ATTC------GT-CT-C-AGC--CGTTGACCTTGGCGAATGTCACATACATTAGGTCCAGA---TATT----TGGATATTAACCT-CATTATCAGTCAATAAATATAAAAA---GTGTTTCATATATTTC-ATTT---T-A----------TATACAGATACAAT-----------AAATA-CTAC-ATTAAATAATATTA-TT------TCCAAAT----
gi|2 : tttttatcAATATATGAAACACTTTTTATATTTATTGACTGATAATG-AGGTTAATATCCAAATATCTGGACCTAATGT-------ATGTGAC-ATTCGCCAAGGT-CA-ACGGC--TG---A----GACGAATATTCCATTGTTCAGATTCATA---GATT----TGGATTTTGACCGATATCATC---------------------GTGTTTTAT-TACTATGAATA---T-GAGTTTCT-GCCGTGTTGTTAAAGTG------A-G-AAAGATTTTC-ATC----AATATCACTC------TTTAAAT----TAA----G--A----------------------------TAAC-----------GTAGTCAATGTTTT----ACGTCA--TAACTGTT--CTA-T-G--CTG------------TGCAT-TT--------GCTG---TTATTGACA-----CATA--TGCGTCTA----GAA-CAGTATCACTTTTCTC--AG--------------------GTGAATATCAC-TTTT------TATC-AG-----TT-GA------CACT--TGGTCGGTTAAT--GACCAATAGAAACAGC--GGAAAT---CTGTGA-GTC-ATATAATAAAGCTA--AATATgtgttttattactatgaatatgagtttctgccgtgttgttaaagtgagaaagattttcatcaatatcactctttaaattaagataacgtagtcaatgttttacgtcataactgttctatgctgtgcatttgctgttattgacacatatgcgtctagaacagtatcacttttctcaggtgaatatcactttttatcagttgacacttggtcggttaatgaccaatagaaacagcggaaatctgtgagtcatataataaagctaaatat
gi|20 : tttttatcatttggaaataatattatttaatgtagtatttattgtatctgtatataaaatgaGGTTCATA---GATT----TGGATGCAGATCTACATCATTAGACAGT---------AA---GTGTTTTAC-T
gi|3 : gctgatgaggtcagtatctatggagatgaccttagtaaacatTCCATA---TATT----TGGATATTGACTGATGGCGTCAAACAAT---------AT---GTGTTTTAG-TATTACAGCTTA--T-AAATGTCT-GTTATATTGCTTAA
gi|3 : tACA-----CGTG--TGTGTTTGTTTTAAAACAATACCCATTATCTG--AG--------------------GTCAATATCCC-TTTT------TATT-GG-----TG-GA------CACG--TGATTGG-TAA-TCAATTAATCATGACAGC--GGGAAT---TTGTAA-ATC-ATACAAcactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcacacgtgtgtgtttgttttaaaacaatacccattatctgaggtcaatatccctttttattggtggacacgtgattggtaatcaattaatcatgacagcgggaatttgtaaatcatacaaaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|4 : ttccatatatttggatattgactgatggcgtcaaacaatatgtgttttagtattacagcttataaatgtctgttatattgcttaacactgtgacctgatgccccatcgttttgtataaacatgaaacctgatgacgtcattttaaacatttaaccgaattattgttgttttagtgttaattggtgtggtgtccgattagccgaaaatgtaaattctcgtgacagcTCCACA---GATA----TGAATATTGACTGATATCATTAGACAGT---------TA---TTATTTTAT-TATTAC--TTT---T-AAATGTTT-CATGTATTGCTAAAATA------A-G--AACTTTTCCGATT---CAATAACACTT------TCTAAAT----TTAAGACG--A----------------C------AC-T-TGAC-----------GTAAACAATGTTTG----ACGTCT--TAACTGAT--TTATT-A--TTAACTA--------TGCAT-TG--------ACAA---TCTTTGATA-----CAT------ATTTGTTTTGAA-C------------------------------------------AATATCAT-TTTC------TATT-GG-----TG-GACAATGTCATG--TGATCAG-TAA-TCAACCAATTGCAACAGC--AGAAAT---TTATAATATCTATATTATAAAACTAGTAATATaacagtacaagtatcacataacttgtaataaacacatattttcat
gi|5 : AATATATAATAAAAGTATCATAGTTATTGTCTGATGATG-GAGTCTGTATCCATATCTATGGACCGGATCT-------AAGTAAT-ATTCACAGAGGTGCA-A-GGC--CG---A----AGTGAATATTCCTAAGGTCACGTTCATA---GGTT----TGGATATTGACAGATATCAACAAACAGT---------GA------TTTT-T-TATTAGGACTTGAGT-AAATTTCT-GTTGTATTCTTAAATTT------A-GAAAAAAACTCC-ATT---TAATTTAACTT------TCTTAAT----TTA----GA-A----------------A------ATGT-TGACTTAAATGTAATGTAACCAATGTTTG----ACATCA--TGACAGTtct
gi|6 : cTCCATA---GATCATGCTGGACATTGA---ATACAATCAGACAGT---------AT---ATGTTTCAT-TTTTACAACT---------------GTTGTATAGCTAAAATT------A-G-AATGTTTTCC-ATT---AAACATCACTT------TA-AAAT----TAA----G--ATTACATCAACTAAATTG------AT-T-TGAC-----------ATAATCAATATTTT----ATGTCAATTACCAGTC--CTA-T-A--CTA--TG--------TGAAT-----------GTGA---TCCTTGACA-----CATG--TGCATTTATTTCAAA-CAATATCATTTTTTTC--AG--------------------GTGAATATCTC-TTTC------TATC--------TGCGA------CACC--T--TTG----ACT-GCCCAATTGTAA-AGC--TGAAAT---T
gi|7 : TTATTGCCTGATGATG-TGATCAATATCTGAATATATTGACCTAATAT-------ATA----------------------------------------CGAATACCCCATAGA--------A-A---GATT----TGGATACTGACCAATATCACTTGAAAAT---------GAAATGTGTTTTAT-TTTTATGACTTG--T-AAATT------------GCTAAAATT------A-G-AAATTTTCCG-ATT---TAATAACA-TT------TACAAAT----CAACAT-G--ATAACAACACAAAC---A------AT-T-TAAC-----------ATAATCAATGTTTT----ACATCA--AAAGTGCT--ATA-T-A--GGAATTT--------TGCA--------------------TCTTGATA-----CGTA--TG
gi|8 : ACA-----CACG--TGCGTTTTATTTGGT-TAATACCATTTTTCTCTCAT--------------------GTGAATAT--------------------------TG-G-------CACG--TGATCGG-TAATT-GACAAAT--TAA-AGCGTGAAAAC---TTATAT-TTC-ATATAATAttt
gi|9 : tatcgctaaactccgtcacttgatgacgtcatttaaaatatctaaccgaaccattgtttttataagcgtttagattgggcacacctccgtcatgtgcgacgtatagttggataaatgtgtaaatacttaagacaCA-----CATGCATGCGACTGTTTC-AA-CTACATCACCCTTTTT--AG--------------------GTGACTATCAC-TTAC------CATG-GGTGCCATG-GA------CATG--TGATCAG-TAATT-GATCAATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TAATACAGAACATTATTTATAGAATTAAGATC