lowQualScore : 111 11111 33333333 666666666666666666666666666 111 11 11 1 1 1 22222222 1 11 11 11 444444444444 1
lowQualScore : 2 7 77 555 4 3 22222 99 22222222 3 88 888888888888888888888888888 2 000 33 33 33 0 3 2 0 7 1 99999999 5 00 0 6 44 00 5 4 7 0 111111111111 1 3
lowQualScore : . . .. ... . . ..... .. ........ . .. ........................... . ... .. .. .. . . . . . . ........ . .. . . .. .. . . . . ............ . .
lowQualScore : 3 1 44 000 5 0 99999 22 00000000 2 22 888888888888888888888888888 2 222 55 88 88 0 2 5 5 0 2 22222222 0 88 8 7 55 22 0 1 2 5 333333333333 4 3
consensus : GGCCGTCCTTAAAAAAAT-AT---TTGTTTGCCGTGCTCCGACCC----AGTA--TTTTTCATGT--GG-TAGGTAGGTAGCTA---NT---TT---TTTA------T--TTTTGACAGATTTTGATTTTGCA--GT--CAT-TTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCAATAAAAA-AGTTTN-GGTAGCT-GCAATTTTGAGTG-AGTAGGTAGGAGCACGGCAAACAATA-TATTT----TTTTAAGGACGGCCTTAAT-TAAA
Reference ( gi|1 ) : GGCCATCCTTAAAAGAAT-AT---TTGTTTGCTGTGCTTCTACCC----AGTA--TTTTTCATGT--G--TATGTAGGTAACTA---TT---TT---TTT-------T--TTTTAACAAATTTTGATTTTGCA--GT--CAT-TTTAAAGAAAAAAGGACAGAAATCTTGAAAAAAAAA-----ATTAAAGGCTTTGAAAGTTGATAAAAA-AGTTTG-GGTAGCT-ACAATTTTGAGTG-AATGGGTAGGAGCACGGCAAACAATA-AATTA----TTTTAAGGATGGCCTTAAT-TAAACTGAATATATGCCATATATAACCTGAAATGTATTAA
gi|2 : GGCCATGTTTAAAA-AAT-ATA--TTGTTTGCCGTGCTCCTACCT----A
gi|5 : atgtaagtctagctttaaaaaaatatttgtttgctgtgctctgacccagtatttttcatgtggttaggtaggttgctaatatattatttttgccaaagtttgattttgcatagtcattttaaagaaaaatggacagaaatcatggggaaaaaaataaatgttttgaaagtcgataaaaaagctttggtagctgcaattttgagtgagGACCATCCTTAAAAAAAT-AT---TTGTTTGCTGTACTCCGATCA----AGTA--TTTTTCATGT--GG-TAGGTAAGTATCTAATCTT---TTATATTT-------T--GTTTAA---ATTTTGATTTTGCA--GT--CAT-TTTAAAGAAAAATGGACAGAAGACATGAATGAAAAA-----ATTAAACACTTTGAAAGTAAATAAAAA-AGTTTT-GGTAGCT-GCAATTTTGAGTG-AGTAGGTAGAAGCACAGtaagcatttagtttttccccatgtatatta
gi|11 : gaacaaGGTCATCAT-AAAAGAGTTAT---TTGTTTGCAGTGTTCCTACC
gi|15 : aaaaattcaaggtagctgattattttgagtgttatGGCCGCTCTTAAAAAAA--ATAAATTGTTTGCCATGCTCCTATCtttatgtaaataaact
gi|4 : tgagtaagttGCCGTCCTTAAAAAAAA-AA---ACCTTTGCCGTGCTCCTAACT----ACTA--ta
gi|13 : tcatgaaaaaaaaacccccaaaaaacgctttgaatgtcaataaaaagatttgggtagctgcaattttgagtGCTGTCCTTAAAAAATT-ATA--TTGTTTGCCGTGCTCCTACCT----Attcaatattcatctctttatatacaatctgtgagatatataaatgattacataaattaatattactgtatttagactagaaattaggtaattaggtaaacatgattcatttatatataggc
gi|12 : tttgagtgagGCCATCCTCAAAAAAA--A----CTGTTTGCTGTGCACCGATCA----AG-A--CCTTT--TGC-----TATGGA---AAGTA---TT---TT---TTT-------T--Tatagagcaatatttcatatc
gi|6 : attatgccaagcactaaCATC-TTAAAAGAAT-GT---TTGATTGCTGTGCCTCGACTC----AGTA--TTTTTCATGT--G--T--GTAGGT-ACCA---GTAGATA---GGTAAAAAAATAATTTTGACAGATTTTAAACT---A--GT--TAT-TTTAAA-AAAAATGGACAGATATCATGAAAAAATAA-----ATGTAATGCTTTGAAAGGCAAT-AAAA-AGTTTA-AGTAGCT-GCATTTTT
gi|8 : tCATCTGTTAAATAAT-GT---TTTTTTGCTGTGCTCCGACCCGCTGACTACTTTTTTCATGTGGG--TAGGTAGGTAGCTA--------TT---TTC-------T--AATTGAAAGATTTTGATTTTACA--ATACCATCTTT---GGAAACAGGAag
gi|2 : agtaCTTTAAAAAAAT-AT---TTGTTTGCTGTGCTCTGACCC----AGTA--TTTTTCATGT--GGTTAGGTAGGTTGCTA---AT---AT---ATTA------T--TTTTGCCAAAGTTTGATTTTGCATAGT--CAT-TTTAAAGAAAAATGGACAGAAATCATGGGGAAAAAA-----AT-AAATGTTTTGAAAGTCGATAAAAA-AGCTTT-GGTAGCT-GCAATTTTGAGTG-AGTAGGTAGGAGCACGGCAAACAATA-TATT-----TTTTAAACATGGCCTa
gi|4 : atgtaagtctagTCATGAAAAAAAAACCCCCAAAAAACGCTTTGAATGTCAATAAAAA-GATTTG-GGTAGCT-GCAATTTTGAGTT-AGTAGTTAGGAGCACGGCAAA-GGTT-TTTTT----TTTTAAGGACGGCTTCAAT-aagcatttagtttttccccatgtatatta
gi|16 : ATAAAAAGAGTTTT-GAAAGAT-GCTATTTTAAGTG-AGTAGATAGGAGCACattcatctctttatatacaatctgtgagatatataaatgattacataaattaatattactgtatttagactagaaattaggtaattaggtaaacatgattcatttatatataggc
gi|11 : AAA-AATTCAAGGTAGCTGATTATTTTGAGTGTTAT-GGTAGGAACACTGCAAACAAAT-AACTC----TTTT-ATGATGACCTTTATGTAAAa
gi|13 : TTTGAGTG-AGTAGGTAGGAGCACGGCAAACAATATAATT-----TTTTAAGGACAGCtaaact
gi|15 : TGAGTA-AGTTGATAGGAGCATGGCAAACAAT----TTATTTTTTTTAAGAGCGGCCTatagagcaatatttcatatc
gi|8 : AGTC-AGCGGGTCGGAGCACAGCAAAAAA-A-CATTA----TTTAACAGATGa
gi|2 : agtaTGGGTCAGAGCACAGCAAACAA-A-TATTT----TTTTAAAGCTAGACTTAacttttttcatgtgggtaggtaggtagctattttctaattgaaagattttgattttacaataccatctttggaaacaggaa
gi|5 : atgGGAGTACAGCAAACAA-A-TATTT----TTTTAAGGATGGTCTTgtatttttcatgtggttaggtaggttgctaatatattatttttgccaaagtttgattttgcatagtcattttaaagaaaaatggacagaaatcatggggaaaaaaataaatgttttgaaagtcgataaaaaagctttggtagctgcaattttgagtgagtaggtaggagcacggcaaacaatatattttttaaacatggcctaagcatttagtttttccccatgtatatta
gi|12 : gaacGGTGCACAGCAAACAGT----TTT----TTTTGAGGATGG-CTTAGT-gatcaagtatttttcatgtggtaggtaagtatctaatcttttatattttgtttaaattttgattttgcagtcattttaaagaaaaatggacagaagacatgaatgaaaaaattaaacactttgaaagtaaataaaaaagttttggtagctgcaattttgagtgagtaggtagaagcacag
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCATCTCTTTATATACAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTATTTAGACTAGAAATTACGTAATTAGGTCAACATGATTCATTTATACATAGGT
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATCTGTTTATATACAATCTGTGAGTTATATAAATGATTACATAAATAAATATTACTGTAT
Unaligned ( gi|9 ): CAATATTTATCTCTATATATACAATCTTTGAGACATATAAATGATTATATAAATTAATATCATTGTATTTAGACTAGAAATTAGGTAATTAGGTAAA
Unaligned ( gi|10 ): AAATTTTGATAGCTGCAATTTGCATGGGCAGGTAGGAGTGCTTAGTTTTTAAAATGGTTTAAAAATTAGTTTTTCTTTTAATGCGGTATTGACAGT
Unaligned ( gi|14 ): AATATTCATATCTTTATATAAAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTAT
Alignments
lowQualScore : 1111 33333333333333 11 11 22222 11 1
lowQualScore : 6 0 6 4444 99 6 7777 99 1 77777777777777 1 8 0 11 11 2 00000 8 1 5 66 66 4 44 3
lowQualScore : . . . .... .. . .... .. . .............. . . . .. .. . ..... . . . .. .. . .. .
lowQualScore : 0 3 0 2222 22 7 0000 22 0 66666666666666 0 0 8 00 00 5 00000 8 4 0 00 99 4 55 3
consensus : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANTT-------TTTTAT-TTTTGAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
Reference ( family-2651 ) : GGCCGTCCTTAAAAAAATATTTGTTTGCCGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANTT-------TTTTAT-TTTTGAC-AGATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCAATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
gi|1 : GGCCATCCTTAAAAGAATATTTGTTTGCTGTGCTTCTACCC----AGTA--TTTTTCATGT-G--T-ATGTA--GGTAACTATTT-------TTTT-T-TTTTAAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAAAGGACAGAAATCTTGAAAAAAAAA-----ATTAAAGGCTTTGAAAGTTGATAAAAA-AGTTTG-GGTAGCTACA--ATTTTGAGTGAATG-GGTAGGAGCACGGCAAACAATAAA-TTATTTTAAGGATGGCCTTAAT-TAAA
gi|10 : A-AATTTT-GATAGCTGCA--A-TTTGCATGGGCA-GGTAGGAGctgaatatatgccatatataacctgaaatgtattaa
gi|11 : AAA-AATTCAAGGTAGCTG-ATTATTTTGAGTG-TTATGGTAGGAACACTGCAAACAA-ATA-ACTCTTTTATGATGACCTTTATGTAAAtgcttagtttttaaaatggtttaaaaattagtttttcttttaatgcggtattgacagt
gi|12 : GCCATCCTCAAAAAAA-ACT-GTTTGCTGTGCACCGATCA----AGAC--CTTTTGCTAT-G-GA-AAGTA--taaact
gi|13 : attatgccaagcactaaTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-ATTTTTTAAGGACAGCttttttttt
gi|15 : TGAGTAAGTT-GATAGGAGCATGGCAAACAATTTATTTTTTTTAAGAGCGGCCTatagagcaatatttcatatc
gi|16 : ATAAAAAGAGTTTT-GAAAGATGCT--ATTTTAAGTGAGTA-GATAGGAGCACa
gi|2 : CTTTAAAAAAATATTTGTTTGCTGTGCTCTGACCC----AGTA--TTTTTCATGT-G-GTTAGGTA--GGTTGCTAATA-------TATTAT-TTTTGCC-AAAGTTTGATTTTGCATAGT--CATTTTAAAGAAAAATGGACAGAAATCATGGGGAAAAAA-----AT-AAATGTTTTGAAAGTCGATAAAAA-AGCTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA--TTTTTTAAACATGGCCTa
gi|4 : atgtaagtctagTCATGAAAAAAAAACCCCCAAAAAACGCTTTGAATGTCAATAAAAA-GATTTG-GGTAGCTGCA--ATTTTGAGTTAGTA-GTTAGGAGCACGGCAAA-GGTTTT-TTTTTTTAAGGACGGCTTCAAT-aagcatttagtttttccccatgtatatta
gi|5 : GACCATCCTTAAAAAAATATTTGTTTGCTGTACTCCGATCA----AGTA--TTTTTCATGT-G-GT-AGGTA--AGTATCTAATC-------TTTTATATTTTGTTTAAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAGACATGAATGAAAAA-----ATTAAACACTTTGAAAGTAAATAAAAA-AGTTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGAAGCACAGattcatctctttatatacaatctgtgagatatataaatgattacataaattaatattactgtatttagactagaaattaggtaattaggtaaacatgattcatttatatataggc
gi|6 : gaacaaCTTAAAAGAATGTTTGATTGCTGTGCCTCGACTC----AGTA--TTTTTCATGT-GTGT-AGGTACCAGTAGATAGGTAAAAAAAT---AA-TTTTGAC-AGATTTTAAACT---A--GT--TATTTTAAA-AAAAATGGACAGATATCATGAAAAAATAA-----ATGTAATGCTTTGAAAGGCAAT-AAAA-AGTTTA-AGTAGCTGCA--TTTTT
gi|8 : tcatAAATAATGTTTTTTTGCTGTGCTCCGACCCGCTGACTACTTTTTTCATGTGG-GT-AGGTA--GGTAGCTATTT-------TCTAA----TTGAA-AGATTTTGATTTTACA--ATACCATCTTag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCATCTCTTTATATACAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTATTTAGACTAGAAATTACGTAATTAGGTCAACATGATTCATTTATACATAGGT
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATCTGTTTATATACAATCTGTGAGTTATATAAATGATTACATAAATAAATATTACTGTAT
Unaligned ( gi|9 ): CAATATTTATCTCTATATATACAATCTTTGAGACATATAAATGATTATATAAATTAATATCATTGTATTTAGACTAGAAATTAGGTAATTAGGTAAA
Unaligned ( gi|14 ): AATATTCATATCTTTATATAAAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTAT
Alignments
lowQualScore : 1111 33333333333333 11 11 22222 11 1
lowQualScore : 3 0 4444 99 6 7777 99 1 77777777777777 1 8 0 11 11 2 00000 8 1 5 66 66 4 44 3
lowQualScore : . . .... .. . .... .. . .............. . . . .. .. . ..... . . . .. .. . .. .
lowQualScore : 7 3 2222 22 7 0000 22 0 66666666666666 0 0 8 00 00 5 00000 8 4 0 00 99 4 55 3
consensus : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANTT-------TTTTAT-TTTTGAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
Reference ( family-2651 ) : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANTT-------TTTTAT-TTTTGAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
gi|1 : GGCCATCCTTAAAAGAATATTTGTTTGCTGTGCTTCTACCC----AGTA--TTTTTCATGT-G--T-ATGTA--GGTAACTATTT-------TTTT-T-TTTTAAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAAAGGACAGAAATCTTGAAAAAAAAA-----ATTAAAGGCTTTGAAAGTTGATAAAAA-AGTTTG-GGTAGCTACA--ATTTTGAGTGAATG-GGTAGGAGCACGGCAAACAATAAA-TTATTTTAAGGATGGCCTTAAT-TAAA
gi|10 : A-AATTTT-GATAGCTGCA--A-TTTGCATGGGCA-GGTAGGAGctgaatatatgccatatataacctgaaatgtattaa
gi|11 : AAA-AATTCAAGGTAGCTG-ATTATTTTGAGTG-TTATGGTAGGAACACTGCAAACAA-ATA-ACTCTTTTATGATGACCTTTATGTAAAtgcttagtttttaaaatggtttaaaaattagtttttcttttaatgcggtattgacagt
gi|12 : GCCATCCTCAAAAAAA-ACT-GTTTGCTGTGCACCGATCA----AGAC--CTTTTGCTAT-G-GA-AAGTA--taaact
gi|13 : attatgccaagcactaaTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-ATTTTTTAAGGACAGCttttttttt
gi|15 : TGAGTAAGTT-GATAGGAGCATGGCAAACAATTTATTTTTTTTAAGAGCGGCCTatagagcaatatttcatatc
gi|16 : ATAAAAAGAGTTTT-GAAAGATGCT--ATTTTAAGTGAGTA-GATAGGAGCACa
gi|2 : CTTTAAAAAAATATTTGTTTGCTGTGCTCTGACCC----AGTA--TTTTTCATGT-G-GTTAGGTA--GGTTGCTAATA-------TATTAT-TTTTGCC-AAAGTTTGATTTTGCATAGT--CATTTTAAAGAAAAATGGACAGAAATCATGGGGAAAAAA-----AT-AAATGTTTTGAAAGTCGATAAAAA-AGCTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA--TTTTTTAAACATGGCCTa
gi|4 : atgtaagtctagTCATGAAAAAAAAACCCCCAAAAAACGCTTTGAATGTCAATAAAAA-GATTTG-GGTAGCTGCA--ATTTTGAGTTAGTA-GTTAGGAGCACGGCAAA-GGTTTT-TTTTTTTAAGGACGGCTTCAAT-aagcatttagtttttccccatgtatatta
gi|5 : GACCATCCTTAAAAAAATATTTGTTTGCTGTACTCCGATCA----AGTA--TTTTTCATGT-G-GT-AGGTA--AGTATCTAATC-------TTTTATATTTTGTTTAAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAGACATGAATGAAAAA-----ATTAAACACTTTGAAAGTAAATAAAAA-AGTTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGAAGCACAGattcatctctttatatacaatctgtgagatatataaatgattacataaattaatattactgtatttagactagaaattaggtaattaggtaaacatgattcatttatatataggc
gi|6 : gaacaaCATC-TTAAAAGAATGTTTGATTGCTGTGCCTCGACTC----AGTA--TTTTTCATGT-GTGT-AGGTACCAGTAGATAGGTAAAAAAAT---AA-TTTTGAC-AGATTTTAAACT---A--GT--TATTTTAAA-AAAAATGGACAGATATCATGAAAAAATAA-----ATGTAATGCTTTGAAAGGCAAT-AAAA-AGTTTA-AGTAGCTGCA--TTTTT
gi|8 : tCATCTGTTAAATAATGTTTTTTTGCTGTGCTCCGACCCGCTGACTACTTTTTTCATGTGG-GT-AGGTA--GGTAGCTATTT-------TCTAA----TTGAA-AGATTTTGATTTTACA--ATACCATCTTag
blockSeqs : C GCTG CT G GTT CC A AAAAAAATAA C T TA AC G CCCCC A T G AA TT T TT G
blockSeqs : T . . . TGT . A TTTTATA T . . . G . T C . T . . A .
blockSeqs : C . . . GA . G TATTAT A . . . . . G C . T . . A
blockSeqs : T . . . GT . T TCTAA A . . . . . T . T . . T
blockSeqs : . . . . GT . . G . . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : .
blockSeqCons : GT** TNTAA*********
originalCons : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANTT-------TTTTAT-TTTTGAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
finalCons : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-GGT--AGGTA--GGTAGCTANTTTNTAA---------TTTTGAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCATCTCTTTATATACAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTATTTAGACTAGAAATTACGTAATTAGGTCAACATGATTCATTTATACATAGGT
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATCTGTTTATATACAATCTGTGAGTTATATAAATGATTACATAAATAAATATTACTGTAT
Unaligned ( gi|9 ): CAATATTTATCTCTATATATACAATCTTTGAGACATATAAATGATTATATAAATTAATATCATTGTATTTAGACTAGAAATTAGGTAATTAGGTAAA
Unaligned ( gi|14 ): AATATTCATATCTTTATATAAAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTAT
Alignments
lowQualScore : 1111 222222222222 11 11 22222 11 1
lowQualScore : 3 0 4444 99 6 7777 99 1 111111111111 0 88888 0 11 11 2 00000 8 1 5 66 66 4 44 3
lowQualScore : . . .... .. . .... .. . ............ . ..... . .. .. . ..... . . . .. .. . .. .
lowQualScore : 7 3 2222 22 7 0000 22 0 888888888888 8 44444 8 00 00 5 00000 8 4 0 00 99 4 55 3
consensus : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANT-TTN-----TA-ATTTT-GAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
Reference ( family-2651 ) : GGCCATCCTTAAAAAAATATTTGTTTGCTGTGCTCCGACCC----AGTA--TTTTTCATGT-G-GT-AGGTA--GGTAGCTANT-TTN-----TA-ATTTT-GAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAATCATGAAAAAAAAA-----ATNAAACGCTTTGAAAGTCGATAAAAA-AGTTTN-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-TTTTTTTAAGGACGGCCTTAAT-TAAA
gi|1 : GGCCATCCTTAAAAGAATATTTGTTTGCTGTGCTTCTACCC----AGTA--TTTTTCATGT-G--T-ATGTA--GGTAACTATT-TTT-----TT-TTTTT-AAC-AAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAAAGGACAGAAATCTTGAAAAAAAAA-----ATTAAAGGCTTTGAAAGTTGATAAAAA-AGTTTG-GGTAGCTACA--ATTTTGAGTGAATG-GGTAGGAGCACGGCAAACAATAAA-TTATTTTAAGGATGGCCTTAAT-TAAA
gi|10 : A-AATTTT-GATAGCTGCA--A-TTTGCATGGGCA-GGTAGGAGctgaatatatgccatatataacctgaaatgtattaa
gi|11 : AAA-AATTCAAGGTAGCTG-ATTATTTTGAGTG-TTATGGTAGGAACACTGCAAACAA-ATA-ACTCTTTTATGATGACCTTTATGTAAAtgcttagtttttaaaatggtttaaaaattagtttttcttttaatgcggtattgacagt
gi|12 : GCCATCCTCAAAAAAA-ACT-GTTTGCTGTGCACCGATCA----AGAC--CTTTTGCTAT-G-GA-AAGTA--taaact
gi|13 : attatgccaagcactaaTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA-ATTTTTTAAGGACAGCttttttttt
gi|15 : TGAGTAAGTT-GATAGGAGCATGGCAAACAATTTATTTTTTTTAAGAGCGGCCTatagagcaatatttcatatc
gi|16 : ATAAAAAGAGTTTT-GAAAGATGCT--ATTTTAAGTGAGTA-GATAGGAGCACa
gi|2 : CTTTAAAAAAATATTTGTTTGCTGTGCTCTGACCC----AGTA--TTTTTCATGT-G-GTTAGGTA--GGTTGCTAAT-ATA-----TT-ATTTTTGCC-AAAGTTTGATTTTGCATAGT--CATTTTAAAGAAAAATGGACAGAAATCATGGGGAAAAAA-----AT-AAATGTTTTGAAAGTCGATAAAAA-AGCTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGGAGCACGGCAAACAATATA--TTTTTTAAACATGGCCTa
gi|4 : atgtaagtctagTCATGAAAAAAAAACCCCCAAAAAACGCTTTGAATGTCAATAAAAA-GATTTG-GGTAGCTGCA--ATTTTGAGTTAGTA-GTTAGGAGCACGGCAAA-GGTTTT-TTTTTTTAAGGACGGCTTCAAT-aagcatttagtttttccccatgtatatta
gi|5 : GACCATCCTTAAAAAAATATTTGTTTGCTGTACTCCGATCA----AGTA--TTTTTCATGT-G-GT-AGGTA--AGTATCTAATCTTT-----TATATTTT-GTTTAAATTTTGATTTTGCA--GT--CATTTTAAAGAAAAATGGACAGAAGACATGAATGAAAAA-----ATTAAACACTTTGAAAGTAAATAAAAA-AGTTTT-GGTAGCTGCA--ATTTTGAGTGAGTA-GGTAGAAGCACAGattcatctctttatatacaatctgtgagatatataaatgattacataaattaatattactgtatttagactagaaattaggtaattaggtaaacatgattcatttatatataggc
gi|6 : gaacaaCATC-TTAAAAGAATGTTTGATTGCTGTGCCTCGACTC----AGTA--TTTTTCATGT-GTGT-AGGTACCAGTAGATAGG-TAAAAAAATA-ATTTT-GAC-AGATTTTAAACT---A--GT--TATTTTAAA-AAAAATGGACAGATATCATGAAAAAATAA-----ATGTAATGCTTTGAAAGGCAAT-AAAA-AGTTTA-AGTAGCTGCA--TTTTT
gi|8 : tCATCTGTTAAATAATGTTTTTTTGCTGTGCTCCGACCCGCTGACTACTTTTTTCATGTGG-GT-AGGTA--GGTAGCTATT-TTC-----TA-A--TT-GAA-AGATTTTGATTTTACA--ATACCATCTTag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCATCTCTTTATATACAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTATTTAGACTAGAAATTACGTAATTAGGTCAACATGATTCATTTATACATAGGT
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATATATCTGTTTATATACAATCTGTGAGTTATATAAATGATTACATAAATAAATATTACTGTAT
Unaligned ( gi|9 ): CAATATTTATCTCTATATATACAATCTTTGAGACATATAAATGATTATATAAATTAATATCATTGTATTTAGACTAGAAATTAGGTAATTAGGTAAA
Unaligned ( gi|14 ): AATATTCATATCTTTATATAAAATCTGTGAGATATATAAATGATTACATAAATTAATATTACTGTAT