lowQualScore : 1 2 1111 1 222 111
lowQualScore : 6 2 4444 6 3 99 0 44 66 333 3 3 333
lowQualScore : . . .... . . .. . .. .. ... . . ...
lowQualScore : 0 4 1111 3 1 66 1 88 77 777 6 6 999
consensus : TCCATCCGCACCGAAAACC-CCGTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
Reference ( gi|3 ) : TCC-TCCGCACCGATAACC-CCTTGAAAGAGACT-TTTTCTTGTATACAAT-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TAATTCCGGTT
gi|2 : TCCATTTGCATCGAAACCC-CCTTGAAAAA--TTGTTTTCTAGTGTAAAATTCCT-AACTGTGTGATATTTT---AAG-A-TTT-TTATTCCGGT
gi|1 : cgagggacagaatttTCA-TTCGCACAAA-AATC-CTGTGAAAGATACA-TTTTCTTGCATACAAA-TGT-AACTTTTCAATTTTTTT--AAT-A-TTT-TTATTCCGGTca
gi|13 : ccgagcgacgaaatgttTCCATCCACACCGATTGCA-ACATGAAGGATATT-TTTTCTTGAATACAAT-CATGAACAG-GTGATcta
gi|4 : -TCCGCACCGA-AATCGCAATATACGATACT-TTTTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATTCCGG
gi|5 : caa-TCCGCACCGA-AATCGCAATATACGATACT-TTCTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAG-A-ATT-
gi|6 : aaCACACCGAAAACC-CCTTGAACGATACT-TTTTCTTGTATACAAT-TTT------TTTAATTTTTTgttatt
gi|7 : atataCGAAAACC-CAATGAGACATACT-TTTTCATGTTTACAAC-CCT-AATTAAGTGATTTTTC---AAG-A-TTT-TGATTCCGGTaattatggtcta
gi|14 : GAAAGCC-CAGTGAAATATATG-TTTTCTTGCATACAAC-ACC-AAATGTGTCATCTTTT
gi|8 : AACC-CCCAAAAAGGTACT-TTTTCTTGTTTACAA------ACCTGTGTAG--TTTTTTAAGA-A-TTT-T-ATTCCGTTTcgt
gi|10 : taaTGAAATGCAGT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTCTTT---AAG-A-TTTATAATT-CGGTTt
gi|9 : acaGAAAGATACT-TTTTCTTGTAGACATA-CCA-AACTGTGCAATTTTTT---AAG-ATTTT-TTATTCCAGTt
gi|15 : AAACC-TTTTCTTGCATACAAC-CCT-TACTATATGATTTTTT---AAG-A-TTT-TTATTCTGGTctatt
gi|16 : aACA-TTTTCTTGCATACAAC-ACT-TATTGTGTGAT--TTTTTATAG-A-TTTCTTATTTCGc
gi|17 : taTTGTATACAAC-ACT-AACTGTGTGA----TTTTAAAG-A-TTT-AAATTCTGGTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTGGTGGTAACGAGGCTCCGATGGAATATTCCATCAGTATTGAAGCCCCCTTGAAAGATTCTTTTTT
Unaligned ( gi|12 ): TGAAAGATACCATGTCTTGCAAACAAATGTAGTATTGTGATTTTTTAAATATTCTTATTACGGTCT
Alignments
lowQualScore : 222
lowQualScore : 2 7 2 22 1 44 1 333 6 3 3
lowQualScore : . . . .. . .. . ... . . .
lowQualScore : 8 1 5 88 9 66 8 444 2 1 1
consensus : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
Reference ( family-2646 ) : TCCATCCGCACCGAAAACCCCGTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
gi|1 : TTCATTCGCAC-AAAAATCCTGTGAAAGATACA-TTTTCTTGCATACAAA-TGT-AACTTTTCAATTTTTTT--AAT-A-TTT-TTATTCCGGT
gi|10 : ccgagcgacgaaatgtCATGAAATGCAGT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTCTTT---AAG-A-TTT-ATAATTCGGTTcta
gi|11 : aTCCATCAGTATTGAAGCCCCCTTGAAAGATTCT-TTTTt
gi|12 : ttggtggtaacgaggctccgatggaatatTGAAAGATACC-ATGTCTTGCAAACAAA-TGT-AGTATTGTGATT--TTTTAAAT-A-TTC-TTATTACGGTt
gi|13 : TCCATCCACACCGATTGCAACATGAAGGATATT-TTTTCTTGAATACAAT-CATGAACAG-GTGATct
gi|14 : GAAAGCCCAGTGAAATATATG-TTTTCTTGCATACAAC-ACC-AAATGTGTCATCTTTT
gi|15 : ACC-TTTTCTTGCATACAAC-CCT-TACTATATGATTTTTT---AAG-A-TTT-TTATTCTGGTcgt
gi|16 : aaaACA-TTTTCTTGCATACAAC-ACT-TATTGTGTGAT--TTTTTATAG-A-TTTCTTATTTCGc
gi|17 : taTTGTATACAAC-ACT-AACTGTGTGA----TTTTAAAG-A-TTT-AAATTCTGGTT
gi|2 : TCCATTTGCATCGAAACCCCCTTGAAAAAT--TGTTTTCTAGTGTAAAATTCCT-AACTGTGTGATATTTT---AAG-A-TTT-TTATTCCGGTta
gi|3 : cgagggacagaatttTCC-TCCGCACCGATAACCCCTTGAAAGAGACT-TTTTCTTGTATACAAT-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TAATTCCGGTTca
gi|4 : ATCCGCACCGAAATCGCAATATACGATACT-TTTTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATTCCGG
gi|5 : caATCCGCACCGAAATCGCAATATACGATACT-TTCTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATT
gi|6 : aATACACACCGAAAACCCCTTGAACGATACT-TTTTCTTGTATACAAT-TTT------TTTAATTTTTT
gi|7 : atCGAAAACCCAATGAGACATACT-TTTTCATGTTTACAAC-CCT-AATTAAGTGATTTTTC---AAG-A-TTT-TGATTCCGGTaattatggtcta
gi|8 : AAAACCCCCAAAAAGGTACT-TTTTCTTGTTTACAAA-C-----CTGTGTAGTTTTTT---AAG-A-ATT-TTATTCCGTTT
gi|9 : tGAAAGATACT-TTTTCTTGTAGACATA-CCA-AACTGTGCAATTTTTT---AAG-ATTTT-TTATTCCAGTt
Alignments
lowQualScore : 222
lowQualScore : 1 1 2 22 1 44 1 333 6 3 3
lowQualScore : . . . .. . .. . ... . . .
lowQualScore : 0 0 5 88 9 66 8 444 2 1 1
consensus : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
Reference ( family-2646 ) : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
gi|1 : TTCATTCGCAC-AAAAATCCTGTGAAAGATACA-TTTTCTTGCATACAAA-TGT-AACTTTTCAATTTTTTT--AAT-A-TTT-TTATTCCGGT
gi|10 : ccgagcgacgaaatgtCATGAAATGCAGT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTCTTT---AAG-A-TTT-ATAATTCGGTTcta
gi|11 : aTCCATCAGTATTGAAGCCCCCTTGAAAGATTCT-TTTTt
gi|12 : ttggtggtaacgaggctccgatggaatatTGAAAGATACC-ATGTCTTGCAAACAAA-TGT-AGTATTGTGATT--TTTTAAAT-A-TTC-TTATTACGGTt
gi|13 : TCCATCCACACCGATTGCAACATGAAGGATATT-TTTTCTTGAATACAAT-CATGAACAG-GTGATct
gi|14 : GAAAGCCCAGTGAAATATATG-TTTTCTTGCATACAAC-ACC-AAATGTGTCATCTTTT
gi|15 : ACC-TTTTCTTGCATACAAC-CCT-TACTATATGATTTTTT---AAG-A-TTT-TTATTCTGGTcgt
gi|16 : aaaACA-TTTTCTTGCATACAAC-ACT-TATTGTGTGAT--TTTTTATAG-A-TTTCTTATTTCGc
gi|17 : taTTGTATACAAC-ACT-AACTGTGTGA----TTTTAAAG-A-TTT-AAATTCTGGTT
gi|2 : TCCATTTGCATCGAAACCCCCTTGAAAAAT--TGTTTTCTAGTGTAAAATTCCT-AACTGTGTGATATTTT---AAG-A-TTT-TTATTCCGGTta
gi|3 : cgagggacagaatttTCC-TCCGCACCGATAACCCCTTGAAAGAGACT-TTTTCTTGTATACAAT-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TAATTCCGGTTca
gi|4 : ATCCGCACCGAAATCGCAATATACGATACT-TTTTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATTCCGG
gi|5 : caATCCGCACCGAAATCGCAATATACGATACT-TTCTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATT
gi|6 : aATACACACCGAAAACCCCTTGAACGATACT-TTTTCTTGTATACAAT-TTT------TTTAATTTTTT
gi|7 : atCGAAAACCCAATGAGACATACT-TTTTCATGTTTACAAC-CCT-AATTAAGTGATTTTTC---AAG-A-TTT-TGATTCCGGTaattatggtcta
gi|8 : AAAACCCCCAAAAAGGTACT-TTTTCTTGTTTACAAA-C-----CTGTGTAGTTTTTT---AAG-A-ATT-TTATTCCGTTT
gi|9 : tGAAAGATACT-TTTTCTTGTAGACATA-CCA-AACTGTGCAATTTTTT---AAG-ATTTT-TTATTCCAGTt
blockSeqs : C A G TT C GA T TTA A T C
blockSeqs : G T . C G A T TTA A . .
blockSeqs : G A . A A A C TTA . . .
blockSeqs : C G . T C A T TTA . . .
blockSeqs : A T . C C T A TTA . . .
blockSeqs : T T . C C T T TTA . . .
blockSeqs : T A . C C A T . . . .
blockSeqs : A A . C C A T . . . .
blockSeqs : A T . T C A T . . . .
blockSeqs : A A . C A T T . . . .
blockSeqs : C . C A T . . . . .
blockSeqs : . T T A . . . . .
blockSeqs : . C C A .
blockSeqs : . A C . .
blockSeqs : . A . .
blockSeqCons : TTA
originalCons : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
finalCons : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
Alignments
lowQualScore : 222
lowQualScore : 1 1 2 22 1 44 1 333 6 3 3
lowQualScore : . . . .. . .. . ... . . .
lowQualScore : 0 0 5 88 9 66 8 444 2 1 1
consensus : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
Reference ( family-2646 ) : TCCATCCGCACCGAAANCCCCNTGAAAGATACT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TTATTCCGGTT
gi|1 : TTCATTCGCAC-AAAAATCCTGTGAAAGATACA-TTTTCTTGCATACAAA-TGT-AACTTTTCAATTTTTTT--AAT-A-TTT-TTATTCCGGT
gi|10 : ccgagcgacgaaatgtCATGAAATGCAGT-TTTTCTTGTATACAAC-CCT-AACTGTGTGATTCTTT---AAG-A-TTT-ATAATTCGGTTcta
gi|11 : aTCCATCAGTATTGAAGCCCCCTTGAAAGATTCT-TTTTt
gi|12 : ttggtggtaacgaggctccgatggaatatTGAAAGATACC-ATGTCTTGCAAACAAA-TGT-AGTATTGTGATT--TTTTAAAT-A-TTC-TTATTACGGTt
gi|13 : TCCATCCACACCGATTGCAACATGAAGGATATT-TTTTCTTGAATACAAT-CATGAACAG-GTGATct
gi|14 : GAAAGCCCAGTGAAATATATG-TTTTCTTGCATACAAC-ACC-AAATGTGTCATCTTTT
gi|15 : ACC-TTTTCTTGCATACAAC-CCT-TACTATATGATTTTTT---AAG-A-TTT-TTATTCTGGTcgt
gi|16 : aaaACA-TTTTCTTGCATACAAC-ACT-TATTGTGTGAT--TTTTTATAG-A-TTTCTTATTTCGc
gi|17 : taTTGTATACAAC-ACT-AACTGTGTGA----TTTTAAAG-A-TTT-AAATTCTGGTT
gi|2 : TCCATTTGCATCGAAACCCCCTTGAAAAAT--TGTTTTCTAGTGTAAAATTCCT-AACTGTGTGATATTTT---AAG-A-TTT-TTATTCCGGTta
gi|3 : cgagggacagaatttTCC-TCCGCACCGATAACCCCTTGAAAGAGACT-TTTTCTTGTATACAAT-CCT-AACTGTGTGATTTTTTTTAAAG-A-TTT-TAATTCCGGTTca
gi|4 : ATCCGCACCGAAATCGCAATATACGATACT-TTTTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATTCCGG
gi|5 : caATCCGCACCGAAATCGCAATATACGATACT-TTCTCATGTATACAAC-CAT-TACTGTGTG---TTTTTTAAAGAA-TTG-TTATT
gi|6 : aATACACACCGAAAACCCCTTGAACGATACT-TTTTCTTGTATACAAT-TTT------TTTAATTTTTT
gi|7 : atCGAAAACCCAATGAGACATACT-TTTTCATGTTTACAAC-CCT-AATTAAGTGATTTTTC---AAG-A-TTT-TGATTCCGGTaattatggtcta
gi|8 : AAAACCCCCAAAAAGGTACT-TTTTCTTGTTTACAAA-C-----CTGTGTAGTTTTTT---AAG-A-ATT-TTATTCCGTTT
gi|9 : tGAAAGATACT-TTTTCTTGTAGACATA-CCA-AACTGTGCAATTTTTT---AAG-ATTTT-TTATTCCAGTt