lowQualScore : 1111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111
lowQualScore : 55 222 1 1 999999 1111 1 2222 1 3333333333333333333333333333333333333333333 11 1 1 333333 1 1 33 4444444444444444444444444444444 1 22 1 1 1 1 1 1 22 33333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11 1 11 666666666 1 555555555555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2 11 1 1 9999999999999999999999999999 11 1 111 111111 33 111111 1 5555555555 1111 1111 777777777777777777 1 1 3333333333 111111 4444444444444444444444444444 11 1 222222222222222 33333333333 11111 11 2222222222 22222222
lowQualScore : 55 0 8 0 222 99 5 0 6 3 5 3 3 9 222222 7777 6 7 0 1111 0 2 5 6666666666666666666666666666666666666666666 0 6 22 5 33 0 0 7 0 666666 6 0 7 11 8 6 5 8 2222222222222222222222222222222 0 0 7 4 5 88 2 6 99 2 5 6 6 1 9 7 9 3 77 99 6 3 6 22222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 6666 2 33 7 3 0 6 88 666666666 3 6 6 8 111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 4 0 99 3 3 1 4 5 6 6 2222222222222222222222222222 88 2 6 444 999999 00 6 7 99 99 3 999999 1 8 5 5 5 3333333333 2222 2222 777777777777777777 3 5 8888888888 666666 8888888888888888888888888888 44 1 555555555555555 5 00000000000 44444 11 5 1 3 4444444444 88888888
lowQualScore : .. . . . ... .. . . . . . . . . ...... .... . . . .... . . . ........................................... . . .. . .. . . . . ...... . . . .. . . . . ............................... . . . . . .. . . .. . . . . . . . . . .. .. . . . ............................................................................. . . . .... . .. . . . . .. ......... . . . . ............ ............................................................................................................................. . . . .. . . . . . . . ............................ .. . . ... ...... .. . . .. .. . ...... . . . . . .......... .... .... .................. . . .......... ...... ............................ .. . ............... . ........... ..... .. . . . .......... ........
lowQualScore : 00 2 8 8 222 66 0 8 0 2 0 2 2 8 555555 0000 0 8 2 2222 0 5 0 8888888888888888888888888888888888888888888 2 0 22 0 55 2 2 8 0 777777 5 0 3 44 0 0 0 0 0000000000000000000000000000000 8 8 8 3 0 00 5 7 77 5 0 7 7 7 2 5 2 3 77 22 7 5 0 22222222222222222222222222222222222222222222222222222222222222222222222222222 8 2 2 8888 5 88 0 2 8 0 22 000000000 2 0 0 2 666666666666 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 0 00 0 0 5 0 5 0 0 5555555555555555555555555555 33 0 7 000 222222 77 0 3 22 77 3 222222 9 1 7 4 7 1111111111 1111 1111 888888888888888888 5 0 4444444444 444444 9999999999999999999999999999 77 6 999999999999999 0 22222222222 33333 66 0 7 5 5555555555 33333333
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACA-N-AGAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTNACCNNNGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACC-CCATNNTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGNC-TCGACAAGATCGCAGGTT-TTACGTTGCAA------CAA-CAAANAGAGTGG--TACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCG--GATAGAAATG-TATGAGGGCGTCCGCTCTAGCT------GCCCATC----T-----------TG---T--CTCACAAA---G--TGACCGCGT-----------------TTTCGTCAC-G--ACTTACAGNGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA----AAAGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATT-TG-TCT--TTAGACGCATGAACGATCGCG------AGA---------------TTAA------A-A-AGTGTGNCTTGNATNTAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTGCTAGGAAATTTGAAAGTGTGTACACTCCCCCACTTTGAACTTCNACAAACCAAGCGCGNTCATTGTCNAATACGCGATCTNCAGNTTTGTCGTCAAATGCACCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTANATTTTCCGTTTAAATTTTCCGC--TTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTCTGTC--TATAACGCGNAATAATGTTATA------CAGAAAGACCCTG-ACCGTTCG-TA-C--------ATAA----TC----ATCTAGATCTAAAA--GAAAN----------AAGTTGCTTGATCTATTTT-TT----ATAAACATCTAA------GGC------CCT-A-------AC-------CCCCC-TTAAGCATCAACTTTTATTGCATATTTC------AAGT----TTTTT-C---------TTTTTT-----AAAAAA-TCGCTGTACGGATTTCAAATGATACGCACG-GGC-----GTATGTGC-GT---ATCGCGATCGACGGGC
Reference ( gi|1 ) : TATCAAAATTAATGTTCAGATTTATATGGCCTGTAAACA-A-AGAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACC-CGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGC-TCGACAGGATCACAAGTT-TTACGTTGCAA------CAT-CAAATAGAGCGT--TACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCG--GATAGAAATG-TATGAGGACATCCACTCTAGCT------GAACATC----T-----------TG---T--TTTGCAAA---G--TAACCACAT-----------------TTTCGTCAC-T--ACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGCGAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--T--TTT--TTAGACGCATGAACGATCGCG------AGA---------------TTAA------A-A-AG---GATTTAAA-ATAAA-------------------------GATGGCATCTGCTAGGATATCTGAAAGTGTGTACACTCTTCCTCTTTGA-TTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----G-----------CGC--TTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTACA------CATAAAGACACTG-ACCATTCG-TA-A--------ATAA----TC----ATCTAGATCTAAAT--GAGTT----------AAGTGGCTTGATCGATTTTATT----AAAAACATCTAA------GGC------CCT-A-------AC-------CTCCT-TTAAGCATAAACTTTTATTGCATATTTT------AAGC----TTTTT-C---------TCTTTT-----AAAAAA-TCGCCGTACAGATTTCAAATGATACGCACA-GGC-----GTATGTCT-TT---ATCGCGATCGACGGGC
gi|13 : TCAAA--TAATGTTCAGATTTATATGGCCTGTAAACA-T-AGAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|17 : tattcTCAAA--TAATGTTCATATATATATGGCATGTAAACA-A-AGCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|15 : tattcTCAAA--TAATGTTCAGATTTATATCGC-TGTTA-------GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTat
gi|7 : tatcAAATTTATACGGCCTGTAAACA-T-GGAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACC-cgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCC---TATAATG---GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACC-CCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|15 : TTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACCAcggcgcgatattggct
gi|3 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACT-AATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGAC-ACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGAGTGG--TACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCG--GACAGAAATG-TTTAAGGGCGTCCGCTTTATCT------ATCCATC----T-----------TG---T--CTCACAAA---G--TGACTGCATTTACGTTCATTGTTCTATTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTA------AAAGCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAG--T--GTTCGTTAAACGCATGACCGATTGCG------AGA---------------TTAA------A-A-
gi|21 : aAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGAC-ACAAcagtgtaccatgcaataatttttttataattatttaaatctaaatttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|5 : CATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATC-CCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTC-TGGACAAGGTCACTAATT-TTACGTTGCAA------CA-----------------ACAA----CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCG--GATAGAAATG-TATGCGGAAGTTTGCTCTAGCTCTAGCCGCACAACGTGAC-----------TG---TAATTTCCTTC---GTTTGTCCA--------------------TTTCGTCAC-G--ACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAAAGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTAT--TCT--TTAGACGCATGAACGATCGC
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCC-TCGACAAGATCAC
gi|2 : TCTGTTACG-ACATCGATAATATCGCAGGTT-TGACGTTGCAA------CAA-CAGATAGAGTGG--TGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGG--GATAGAAATG-TATGAGGGCCTCTGCTCTAGTT------GTCCGTC----T-----------TG---T--CTCACAAA---G--TG----CGT-----------------TT-----AT-T--CCTTTCGTTGTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA------AGCGATATCTTTGACTTTGTCCATCATGTTTCATGCATAT--TGTTCT--TTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATA-AG---GATTTAAATCTAAA-------------------------GATGGTACCTGCTAGG--------AA-----------------CTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGT--------CAT-----GTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTATA------CAGAAAAACCCTG-ACCGTTCG-TA-C--------ATAA----TCATATATTTAGATCTAAAA--GAAAA----------ACGTTGCTTGATCTATTTTAT-------AAACATTTAA------GG-------CCT-A-------AC-------CCCCT-TTAAGTATCAACTTTTATTGCATATTTC------AAACTTTTTTTTT-T---------TTTTTT-----AAAAAA-
gi|11 : TGTGACGGCC-TCCACTAGATCGCATGAG-TTACTTTGCTA------CAA-CAAGGAGAGTGG--TATACGGGATGGCAACATGTGCTGAACAAC----------------TAAT-------------TACAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CA----AGAT---ACGACAC--TAAATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTC------GCCCATC----T-----------GC---T--CTCACAAA---G--
gi|6 : tctgGTTGTTACGTTGCAA------CAA-CAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTG--GATAGAAATG-TATGAGGGCATCCGCCCTAGCT------GCCCATC----TCACTAAGAGTCTGCATT--TTTGTGCGTTTG--T--CCA--------------------TTTCATCAC-G--ACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAG--TGGTTAAAT-------CGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGT--TCT--TTGGAcga
gi|14 : atctatatggggccgacatcgggcctatatagaatgtttgctggAGATCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGG---AACCATCTAAGGCAGACGCCACGGCCCTGAAAGCG--GATAGAAATG-TGTGAGGGCAGTCGCTCAAGCT------GTCCATC----T-----------TG---T--CTTACAAG---G--AGACTGCAT-----------------TTTC
gi|4 : GTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATAT--TG-TTTG-TTAGACGCATGAACGATTGCC------AGA---------------TTAA------A-ACAGTGTGCCTTGCA-ATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGAAATTTGAAAGTGTGTACACTCCCCCACTTTGA-TTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCG-----------CAC--TTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTATA------CAGAAAGACCCTG-ACCGTTCG-TA-C--------ATAATTATTC----ATCTAGATCTAAAA--GAAAA----------ACGTTGCTTGATCTATTT--TT----ATAAACATCTAA------GGC------CCT-A-------AC-------CCACC-TTAt
gi|12 : --TTATATA--TAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTATA------CAAAACGACCCTG-ACCGTTTG-TACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTATTT--TT----ATATACTTCTAA------GGC------CGTAA-------ACCCACCCACTCCCATTAAGCATCAACCTTTcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTATA------CAGAAATACCCTG-ACCTTTCG-TT-C--------ATAG----GC----TTCTAGATCTAAAG--GATAT----------AAGTTGCTTGATCTATTTTATT----ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCAC-------CCCCTCTTAAGAATCAACTTTTATTGCATATTTTGCATATAAGT----TTTTT-C---------CTTTTTTTTAAAAAAAA-TTGCAGTACGAATTTCAAATGATACG
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--Ta
gi|10 : TTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTG-ACCGGTCG-TG-C--------ATAA----TC----ATCTAGATCAAAAA--GAGAA----------AAGTTGCTTGGCCCATTT--TT----ATAAACATCTAA------GG-----------AGGG----AC-------CTCAC-TTAAGCATCAAGTTTAATCGCATAATTC------ACGT----TTTTTCC---------TTTTTT-----ATAAAA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGT-----GTATGTGC-GT---ATTGCGATCG
gi|22 : CGCGAAATAATGTTATA------CAGAAAGACCCTG-CCCGTTCG-TA-C--------ATAA----TC----AACT
gi|3 : ATTAAAACAGTGTACCATGCAATA-ATTTTTTT-ATAA----TT----ATTTAAATCTAAATTTAAATTTAAAA-----AAGTAGCTTGAT--ATTTTTTTTGATATAAACATCTAAATCTAAGAC------CGT-A-------AT-------CCCCA-T-AAGCATAAA-TTTTATTGCATATTTC------A-------TTTTT-C---------Tttcacgaaatattaggaaggtgttacctg
gi|16 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagATTTTGT-----ATAAGTATCTAA------GGC------CCT-ATA-----AT-------TTCCC-TTAATCTTCAACTTTTATTGCATATTTT------AAGT----TTTTT-CA--------TGTTTT-----AAAAAAATCGCTGTACGGATTTCAAATAATACGCACG-TGC-----GTATGTGC-AT---ATCGGGATCGACGGGtatatcttataatgtatgcatt
gi|18 : ctCATCAACATTTATTTCATATTTC------CATG----TTTTT-C---------TTTTTT-----AAAAA--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTTTGTGCACATCTATTTCCATGACGTTCGACGGGC
gi|20 : ACTTTTATTGCATATTTC------AAGT----TTTTT-CC--------TTTTTT-----AAAAAG-TCGCTGTACAGATTTAAAATGATACGC-TA-----------ATG--T-GT---ATCACAATCTACGAGCct
gi|19 : CTTTAATTGCATATTTC------AAGT----TTTTT-TCGTTTTCGTTTTTTT-----AAAAAAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGC-----GTATCTGC-GT---ATCGCGATCGAGGGGCctg
gi|4 : CACCTTACGGATTTCAAATGATACGCACG-GGC-----GTATGTCC-GT---ATCGCGATC
Alignments
lowQualScore : 11111111111111111111111111111111 11111111111
lowQualScore : 11 333333 1111 1111 7777777777777777777777777777777777777777777 111111 22222222222222222222222222222222 111 11 4444444 22 33333333333333333333333333333333333333 1111 2 2 11111 88888888888 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 1 99 1 0 0 333333 4444 7777 8 1 1 5555555555555555555555555555555555555555555 0 1 22 8 3 1 6 999999 6 55 99 1 3 5 0 3 5 0 1 1 5 2 0 4 1 0 1 77777777777777777777777777777777 99 3 444 1 11 0 0 1111111 22 5 66 6 22222222222222222222222222222222222222 8888 77 3 0 11 0 3 1 1 6 1 1 0 0 7 00000 11111111111 111 666666 3 77 1 666666 222222222 0000 0000 22222222222222 1 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . . .. . . . ...... .... .... . . . ........................................... . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . . ................................ .. . ... . .. . . ....... .. . .. . ...................................... .... .. . . .. . . . . . . . . . . ..... ........... ... ...... . .. . ...... ......... .... .... .............. . . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 0 22 0 8 8 666666 2222 0000 0 0 4 2222222222222222222222222222222222222222222 8 0 00 0 2 0 7 222222 7 00 22 8 7 7 7 4 7 1 9 7 7 7 1 0 6 6 7 55555555555555555555555555555555 22 2 000 0 00 8 8 0000000 66 7 33 7 88888888888888888888888888888888888888 0000 33 7 7 77 7 3 0 0 7 0 0 7 7 3 00000 77777777777 777 444444 0 99 0 444444 999999999 6666 6666 00000000000000 0 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCAT-GATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATGT-ATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT-T-T-----------TT--TCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA-G-GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCT-TTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCA-NTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-ATCTGAAAGTGTGTACACTCCCCCACTTTG-ATTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCG-----------CGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACANA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTNACCNNNGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNNTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGNCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCAT-GATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATGT-ATGAGGGCGTCCGCTCTAGCTGCCCATCTTGTCTCACAAAGTGACCG----------CGT-----------------TT--TCGTCA---CGACTTACAGNGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA----AAAGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTTGTCT-TTAGACGCATGAACGATCGCGAGATTAAAA-AGTGTGNCTTGNATNTAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTGCTAGGAAATTTGAAAGTGTGTACACTCCCCCACTTTGAACTTCNACAAACCAAGCGCGNTCATTGTCNAATACGCGATCTNCAGNTTTGTCGTCAAATGCACCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTANATTTTCCGTTTAAATTTTCCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTCTGTC--TATAACGCGNAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAANAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCAT-GATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATGT-ATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCA----------CAT-----------------TT--TCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGCGAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGCT--TTT-TTAGACGCATGAACGATCGCGAGATTAAAA-A---------GGATTTAAA------A--------------TAAAGATGGCATCTGCTAGGATATCTGAAAGTGTGTACACTCTTCCTCTTTG-ATTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGCAATG------------------------CGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAACA---ACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCATC-AAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCAT-GATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATGT-GTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTG----------CAT-----------------TT--TC
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTt
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCAT-AATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATGT-ATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGT-----------------TTATTC----------CTTTCGTTGTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA----A--GCGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCT-TTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTT-AACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA-------------------------ACTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCG-----------CGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCAT-GATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATGT-TTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTG----------CATTTACGTTCATTGTTCTATT--TCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTT--A----AAAGCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCG-TTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCA-ATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataatttttttGTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATA-TTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCA-ATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGAAATTTGAAAGTGTGTACACTCCCCCACTTTG-ATTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCG-----------CACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGAT-GATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATGT-ATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTTGTCCA----------TT--TCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAAAGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCT-TTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCAT-GATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATGT-ATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTG----------CATTTTTGTGCGTTTGTCCATT--TCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTT-------AAATCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCT-TTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAATG------GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 333333 1111 1111 7777777777777777777777777777777777777777777 111111 000000000000000000000000000000000 1111 11 44444444 1111 11 33333 1 1 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 99 1 0 0 333333 4444 7777 8 1 5555555555555555555555555555555555555555555 0 1 11 8 3 1 6 999999 6 55 99 1 3 5 0 1 5 0 1 5 2 0 2 1 0 1 666666666666666666666666666666666 4444 11 0 0 0 77777777 2 444 3 1 0000 33 0 3 66666 77 3 3 1 7 6 7 111 666666 1 77 1 666666 222222222 0000 0000 22222222222222 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . .. . . . ...... .... .... . . ........................................... . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . ................................. .... .. . . . ........ . ... . . .... .. . . ..... .. . . . . . . ... ...... . .. . ...... ......... .... .... .............. . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 22 0 8 8 666666 2222 0000 0 4 2222222222222222222222222222222222222222222 8 0 22 0 2 0 7 222222 7 00 22 8 7 7 7 0 7 1 9 7 7 1 4 6 6 7 555555555555555555555555555555555 8888 00 8 8 8 88888888 5 888 5 0 0000 22 8 2 77777 33 3 3 0 3 7 3 777 444444 0 99 7 444444 999999999 6666 6666 00000000000000 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT---TTCC-----------TTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA-A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTCCCCCACTTTG-ATTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT---TT-------------TTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA-G--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCANTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTCCCCCACTTTG-ATTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATG-TATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCA----------CA-------T-------------TTTCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGC-GAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--TTTTTTAGACGCATGAACGATCGCGAGATTAAAA-------------AGGA-----TTTAAAA-----TAAA------GATGGCATCTGCTAGGATA-TCTGAAAGTGTGTACACTCTTCCTCTTTG-ATTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----GCGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAA---CAACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CAAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATG-TGTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTG----------CATTT---TC-------------T
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTT
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATG-TATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGTTTA--TTCC-----------TTTCGTT---------------GTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA-A--G----CGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCTTTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA--------------------------ACTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATG-TTTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTG----------CATTTACGTTCATTGTTCTA---TTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTA-------AAAGCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCGTTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCAATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataatttttttGTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATATTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCAATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGA-AATTTGAAAGTGTGTACACTCCCCCACTTTG-ATTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATG-TATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTT---GTCCA----------TTTCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAA-AGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCTTTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATG-TATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTG----------CATTT---TTGTGCGTTTGTCCATTTCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTTAAA--------TCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCTTTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAATG------GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct
Alignments
lowQualScore : 11 333333 1111 1111 7777777777777777777777777777777777777777777 111111 8888888888888888888888888888888888888888 1111 11 555555555 1111 11111 22222 11111 1 1 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 99 1 0 0 333333 4444 7777 8 1 5555555555555555555555555555555555555555555 0 1 11 8 3 1 6 999999 6 55 99 1 3 5 0 1 5 0 1 5 2 0 2 1 0 1 2222222222222222222222222222222222222222 4444 11 0 0 333333333 2 444 3 0000 00000 0 3 88888 11111 3 3 1 7 6 7 111 666666 1 77 1 666666 222222222 0000 0000 22222222222222 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . .. . . . ...... .... .... . . ........................................... . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . ........................................ .... .. . . ......... . ... . .... ..... . . ..... ..... . . . . . . ... ...... . .. . ...... ......... .... .... .............. . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 22 0 8 8 666666 2222 0000 0 4 2222222222222222222222222222222222222222222 8 0 22 0 2 0 7 222222 7 00 22 8 7 7 7 0 7 1 9 7 7 1 4 6 6 7 0000000000000000000000000000000000000000 8888 00 8 8 444444444 5 888 5 0000 88888 8 2 77777 77777 3 3 0 3 7 3 777 444444 0 99 7 444444 999999999 6666 6666 00000000000000 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTCCCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCC-TTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTCCCCCACTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATG-TATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCA----------CAT---------------------------TTTCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGC--GAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--TTTTTTAGACGCATGAACGATCGCGAGATTAAAA-------------AGGA-----TTTA---------AAA--TAAAGATGGCATCTGCTAGGATA-TCTGAAAGTGTGTACACTCTTCCTCTTTGA-TTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----GCGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAA---CAACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CAAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATG-TGTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTG----------CATTT----------T----------
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTct
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATG-TATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGTTTA---------T----------TCC-TTTCGTT---------------GTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA--A--G----CGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCTTTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA-A-------------------------CTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATG-TTTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTG----------CATTTACGTTCATTGT----------TCTATTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTAAA--A------GCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCGTTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCAATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataatttttttGTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATATTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCAATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGA-AATTTGAAAGTGTGTACACTCCCCCACTTTGA-TTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATG-TATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTT----------G----------TCCATTTCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAA--AGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCTTTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATG-TATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTG----------CATTT----------TTGTGCGTTTGTCCATTTCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTTAAA---------TCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCTTTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAATG------GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct
Alignments
lowQualScore : 11 333333 1111 1111 7777777777777777777777777777777777777777777 111111 666666666666666666666666666666666666 1111 11 555555555 1111 11111 3333333333333333333333333333 1 1 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 99 1 0 0 333333 4444 7777 8 1 5555555555555555555555555555555555555555555 0 1 11 8 3 1 6 999999 6 55 99 1 3 5 0 1 5 0 1 5 2 0 2 1 0 1 999999999999999999999999999999999999 5 4444 11 0 0 333333333 2 444 3 0000 00000 0 3 7777777777777777777777777777 3 3 1 7 6 7 111 666666 1 77 1 666666 222222222 0000 0000 22222222222222 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . .. . . . ...... .... .... . . ........................................... . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . .................................... . .... .. . . ......... . ... . .... ..... . . ............................ . . . . . . ... ...... . .. . ...... ......... .... .... .............. . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 22 0 8 8 666666 2222 0000 0 4 2222222222222222222222222222222222222222222 8 0 22 0 2 0 7 222222 7 00 22 8 7 7 7 0 7 1 9 7 7 1 4 6 6 7 000000000000000000000000000000000000 6 8888 00 8 8 444444444 5 888 5 0000 88888 8 2 7777777777777777777777777777 3 3 0 3 7 3 777 444444 0 99 7 444444 999999999 6666 6666 00000000000000 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATG-TATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCA----------CAT---------------------------TTTCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGC--GAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--TTTTTTAGACGCATGAACGATCGCGAGATTAAAA-------------AGGA-----TTTA---------AAA--TAAAGATGGCATCTGCTAGGATA-TCTGAAAGTGTGTACACTCTTCCT-CTTTGA-TTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----GCGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAA---CAACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CAAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATG-TGTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTG----------CATTT----------T----------
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTct
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATG-TATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGTTTA---------T----------TCC-TTTCGTT---------------GTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA--A--G----CGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCTTTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA-A--------------------------CTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATG-TTTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTG----------CATTTACGTTCATTGT----------TCTATTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTAAA--A------GCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCGTTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCAATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataatttttttGTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATATTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCAATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGA-AATTTGAAAGTGTGTACACTC-CCCCACTTTGA-TTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATG-TATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTT----------G----------TCCATTTCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAA--AGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCTTTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATG-TATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTG----------CATTT----------TTGTGCGTTTGTCCATTTCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTTAAA---------TCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCTTTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAATG------GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct
Alignments
lowQualScore : 11 333333 1111 1111 7777777777777777777777777777777777777777777 111111 666666666666666666666666666666666666 1111 11 555555555 1111 11111 3333333333333333333333333333 1 1 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 99 1 0 0 333333 4444 7777 8 1 5555555555555555555555555555555555555555555 0 1 11 8 3 1 6 999999 6 55 99 1 3 5 0 1 5 0 1 5 2 0 2 1 0 1 999999999999999999999999999999999999 5 4444 11 0 0 333333333 2 444 3 0000 00000 0 3 7777777777777777777777777777 3 3 1 7 6 7 111 666666 1 77 1 666666 222222222 0000 0000 22222222222222 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . .. . . . ...... .... .... . . ........................................... . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . .................................... . .... .. . . ......... . ... . .... ..... . . ............................ . . . . . . ... ...... . .. . ...... ......... .... .... .............. . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 22 0 8 8 666666 2222 0000 0 4 2222222222222222222222222222222222222222222 8 0 22 0 2 0 7 222222 7 00 22 8 7 7 7 0 7 1 9 7 7 1 4 6 6 7 000000000000000000000000000000000000 6 8888 00 8 8 444444444 5 888 5 0000 88888 8 2 7777777777777777777777777777 3 3 0 3 7 3 777 444444 0 99 7 444444 999999999 6666 6666 00000000000000 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTGATCTTAGTTGTG---------------TACG---------------GGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATG-TATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCA----------CAT---------------------------TTTCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGC--GAAGGCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--TTTTTTAGACGCATGAACGATCGCGAGATTAAAA-------------AGGA-----TTTA---------AAA--TAAAGATGGCATCTGCTAGGATA-TCTGAAAGTGTGTACACTCTTCCT-CTTTGA-TTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----GCGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAA---CAACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CAAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAACGA------TAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATG-TGTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTG----------CATTT----------T----------
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTct
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAATG------GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATG-TATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGTTTA---------T----------TCC-TTTCGTT---------------GTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTAAA--A--G----CGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCTTTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA-A--------------------------CTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTG---------------CGCGTCAAGCATATACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTCACCGAA----TA---------------CACG---------------GGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATG-TTTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTG----------CATTTACGTTCATTGT----------TCTATTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTAAA--A------GCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCGTTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCAATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataatttttttGTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATATTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCAATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGA-AATTTGAAAGTGTGTACACTC-CCCCACTTTGA-TTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATG-TATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTT----------G----------TCCATTTCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTAAA--AGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCTTTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATG-TATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTG----------CATTT----------TTGTGCGTTTGTCCATTTCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTTAAA---------TCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCTTTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTGACCTTTGTTGTGCGCGTCCAGTGAAAACACG---------------GGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAATG------GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCCAACGAA----TA---------------CATA---------------GGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct
blockSeqs : . C TA G A CAAT TGTT G T TTCGTTGTGCGCGTCAAGCATATACACT T AC A T C G AAAAAA C GG AT G A C C C T T A C G A CATTTACGTTCATTGT A ACGT TA AGTGAAG C ACG T AACT TAAGG T AATTTGAAAGTGTGTACACTCCCCCA A G T A C T TAT AAATTT T AA G CATGTA ACATTAAAA TTAT ATAT AGATAAAAAA T A GAT ATCTAA CACCAACCCCACCCTCGC A CACTCCCA TGCATA CTTT C CGTTTTCGT TTTAA A A T TG TATTTCCATG
blockSeqs : . A . G G . . . C TTTGTTGTGCGCGTCCAGTGAAAACACG A TA . T C . . . AT . A T . A . A . A T T A TAATTTCCTTCGTTTG A A . AG C GTA A ATTT TAATT T A . . G . C T . . A . C . . . . TTTAAATTT T . . . CCCTATA . TC . . . A . . . A G .
blockSeqs : . C . A . . . . C GAATACACG T AC . . C . . . AC . T G . G . A . C T T A CATTTTTGTGCGTTTG A A . A C GTG T AACG TATGA T . . C . T . . . . AG T . . . CCGTAA . C . . . C . . . A T .
blockSeqs : . . . C . . . . A GAATACATA G . A . . . AG . A G . A . T . G T T A CGTTTAT . . . . . . C . A . . . . AG . . . . CCGTA . C . . . . . . . A T .
blockSeqs : . C . T . . . . . . . . C . A . G C A T CATTTT . . A . G . . . . AG . . . . CCCTA . T . . . . . . . A G .
blockSeqs : . A . . . A . . . . C . A . . . . GG . . . . AGGG . A . . . . . . . . . .
blockSeqs : . . . . . . CCTA . C . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** G***** GAATACACN********************************** CATTTTCGTTCGTTTG******************** A********
originalCons : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGA-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCTTAGTTGTG---------------CACG---------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTG----------CGTTT----------T----------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAA--A--GAAGGCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
finalCons : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGG-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGACCGAATACACN----------------------------------GGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTGCATTTTCGTTCGTTTG--------------------TCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTAAAA--------GCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 1111 1111 111111111111111111111111111111111111111111111111 111111 1111111 1111 11 2222222 111111 1111 11111 3333333333333333333333333333 1 1 111 111111 111111 222222222 1111 1111 33333333333333 1 1 111111 3333333333333333333 111111111 111111 222222222 11111 2222222222
lowQualScore : 11 5 99 1 0 0 9999999 4444 7777 8 555555555555555555555555555555555555555555555555 1 0 1 11 8 3 1 6 999999 6 55 99 1 3 5 0 1 5 0 1 5 2 0 2 1 0 1 7777777 33 0 4444 11 0 0 3333333 999999 2 444 3 0000 00000 0 3 7777777777777777777777777777 3 3 1 7 6 7 111 666666 1 77 1 666666 222222222 0000 0000 22222222222222 5 0 888 444444 3333333333333333333 5 888888888 222222 9999 4 666666666 22222 5 5 1 66 5555555555
lowQualScore : .. . .. . . . ....... .... .... . ................................................ . . . .. . . . . ...... . .. .. . . . . . . . . . . . . . . . ....... .. . .... .. . . ....... ...... . ... . .... ..... . . ............................ . . . . . . ... ...... . .. . ...... ......... .... .... .............. . . ... ...... ................... . ......... ...... .... . ......... ..... . . . .. ..........
lowQualScore : 00 0 22 0 8 8 6666666 2222 0000 0 888888888888888888888888888888888888888888888888 0 8 0 22 0 2 0 7 222222 7 00 22 8 7 7 7 0 7 1 9 7 7 1 4 6 6 7 5555555 88 6 8888 00 8 8 8888888 222222 5 888 5 0000 88888 8 2 7777777777777777777777777777 3 3 0 3 7 3 777 444444 0 99 7 444444 999999999 6666 6666 00000000000000 5 0 888 444444 1111111111111111111 0 444444444 888888 4444 4 777777777 55555 0 0 7 44 0000000000
consensus : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAG-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTG-------------------ANC-------------------GAA----TACACGGGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTGCATTTTCGTTCGTTTGTCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTA------AAA------GCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
Reference ( family-2611 ) : NNTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATCCATACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACTGCGCTTTGAAACGTTCGCCCTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATGG-----GTAGATA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTT----GTACGT-TTG-------------------ACC-------------------GAA----TACACNGGGACGTGATGGTTCGACACCAACACCAGCTGCCAGGGAGACGGCTTTGTGATGNAGTACACCCCATNCTAATAGGTCGTTCCGTTCACCAATTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGGCCTCGACAAGATCGCAGGTT-TTACGTTGCAA------CA-ACAAANAGA--GTGGTACACAAGACGCTAACATGTGTTGAACAGCAACTAAAGTCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTNTCCA-TGATGGGATAAATCATCCAAGGCAGACGCCACTACCCTGAAAGCGGATAGAAATG-TATGAGGGCGTCCGCTCTAGCTGTCCATCTTGTCTCACAAAGTGACTGCATTTTCGTTCGTTTGTCCATTTCGTCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTCGCAGAGTGGTTA------AAA------GCGATCTCTTGGACTTTGTCCATCATGTTTCGTGCATATTGTTCTTTAGACGCATGAACGATCGCGAGATTAAAACAGTGCGCCTTGCAGTAAACTTTTTATAAGNATTTAAATCTAAAGATGGTACCTGCTAGGA-A-TCTGAAAGTGTGTACACTC-CCCC-CTTTGA-TTTTAATAAACCAA-CGCGATCATTGTCAAATACTCGATCTNCAGATTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCGCTTACAAACTTAAACAAAGC---ATTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTNTGTC--TATAACGCGGAATAATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAA----TC----ATCTAGATCTAAA----AG--------AAAAAAGTTGCTTGATCTATTTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-CC-C-------TTAAGCATCAACTTTTATTGCATATTT------CAAG----TTTTTT-C---------TTTTTT-----AAAA-AA-TCGCTGTACGGATTTCAAATGATACGCACG-GGCGTATGTGCGTATC----------GCGATCGACGGGC
gi|1 : TCAAAATTAATGTTCAGATTTATATGGCCTGTAAACAAA--GAGCATCTATACATGTAACGTAATTTGTGGAGAACGTTTTGGAATGAGGAACCGCGCTTTGAAACGTTCGCACTCTTGCAGCAATCTTGATTCAAGTTCTGTTCTGAGATGGTCCAAGAATAATACATGTAGATA----CATGTTGATTCTTCAATGCTAAGATGTCGTTTCAGCTT----GTACGT-TTG-------------------ATC-------------------TTAGTTGTGTACGGGGACGTAATGGTTCGACAACAACACCAGATGCCAGGGAGACGGCTTTGTGATGAAGTACACCCGTTTTTAATAGGTCGTTCCGTTCACCATTTAATTGA-TAAGTTAGAACACGGGCTTCTGTTACGTGCTCGACAGGATCACAAGTT-TTACGTTGCAA------CA-TCAAATAGA--GCGTTACAAAAGACGCTAACATGTGTTGAACAGCAATTAAAATAACGATTTAATCGTACTT-AAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGCGTCTCCA-TGATGGGGTAAATCATCCACGGTAGATTCCACAACCCTTTAAGCGGATAGAAATG-TATGAGGACATCCACTCTAGCTGAACATCTTGTTTTGCAAAGTAACCACAT-----------------TTTCGTCA---CTACTTACAGGGTCTG--CATTTAGATTGTTCTGAAATTGTAGCAGCCGTTTCACAGATTGGTTAAACGCGAAG------GCGATGTCTTGAATTTTGTTCATCATGTTTCGTGCATGC--TTTTTTAGACGCATGAACGATCGCGAGATTAAAA-------------AGGA-----TTTA---------AAA--TAAAGATGGCATCTGCTAGGATA-TCTGAAAGTGTGTACACTCTTCCT-CTTTGA-TTTTAATAAACCAA-CGCCATCATTGTCAAATACTCGATCTACAGATTTGTCGTCAAATACATCGATATACGGTGGGTCGATAGAATTTAAACATTCCGC--------AAT-----GCGCTTACACACTTAAACAAAGC---ATTCGGA------AATGTTCTTTCTCAATAGACCGTTCCAGGGTATGTC--TATAACGCAGAATAATGTTA------CACATAAAGACACTGACCATTCGT---------AAATAA----TC----ATCTAGATCTAAA----TG--------AGTTAAGTGGCTTGATCGATTTTATT---AAAAACATCTAA------GGC------CCT-A-------ACCT-CC-T-------TTAAGCATAAACTTTTATTGCATATTT------TAAG----CTTTTT-C---------TCTTTT-----AAAA-AA-TCGCCGTACAGATTTCAAATGATACGCACA-GGCGTATGTCTTTATC----------GCGATCGACGGGC
gi|10 : taTTCGGA------AATGTTCGGTCTCGATAGACCGTTCCAGGGTTTGTCAATATAACTCGGAAAAATGTTACATGTATACAGAAAGACATTGACCGGTCGT---------GCATAA----TC----ATCTAGATCAAAA----AG--------AGAAAAGTTGCTTGGCCCA-TTT-TT---ATAAACATCTAA------GG-----------AGGG----ACCT-CA-C-------TTAAGCATCAAGTTTAATCGCATAATT------CACG----TTTTTTCC---------TTTTTT-----ATAA-AA-CCTCTGTACGGATTTCAAATGATACGCTCG-GGTGTATGTGCGTATT----------GCGATCG
gi|11 : TGTGACGGCCTCCACTAGATCGCATGAG-TTACTTTGCTA------CA-ACAAGGAGA--GTGGTATACGGGATGGCAACATGTGCTGAA---CAACTAA-------------------TT-A------CAGACTCTGTGGTTTGCGGTTTTTGAGTCGCCACCGATACGACATATCAT-CAAG--ATACGACACTA-----AATGATAATAGAAATGTTAGCAGTGCATCAGCCCTGGTCGCCCATCTGCTCTCACAAAGCGA
gi|12 : tctgTAAACAAAGCTATAT---GA------AATGTTCGATCTCGATAGACCGTTCAAGGGTATGTC--TAAAACACGCACTTATGTTA------TACAAAACGACCCTGACCGTTTGTACATTAAAAACATAA----TC----ATTTAGGTCGAAA----AGATAAAAAAAAAAAAGCTGCTTTATCTA-TTT-TT---ATATACTTCTAA------GGC------CGTAA-------ACCCACC-CACTCCCATTAAGCATCAACCTTT
gi|13 : ttatataTCAAA--TAATGTTCAGATTTATATGGCCTGTAAACATA--GAGCATTCATACCTGTAACGTAATTTGTGGAGAACCTTTTGGAATGAGGAACTGCGCATTGAAATGTTCGCCCTCTTGCAGCAATCCTGGTTCAAGTTCTGTTCTGAGATGGTTCAAGAAC-G-----ATAGATA----CATGTTAATTCTCC
gi|14 : tattcTCACGACAAAATAGAATTT-AAAAAGTCAACCTCTGTGGGTTCCCGCTTTAAAGTATCCA-TGATGGGA---ACCATCTAAGGCAGACGCCACGGCCCTGAAAGCGGATAGAAATG-TGTGAGGGCAGTCGCTCAAGCTGTCCATCTTGTCTTACAAGGAGACTGCATTTTC
gi|15 : agaTCAAA--TAATGTTCAGATTTATATCGC-TGT-----TA--GAGCTTTCATACCTGTAACGTAATTTG----AAACGTTt
gi|15 : tatcTTTGAAACGTTCGCCCTCCTGCAGCAATCTTGATTCAATTTTTGTTCTGAGATGGTTCAAGAAT-G-----GTAGATA----CAGATTTATTCTCCCATACcgccctcctgcagcaatcttgattcaatttttgttctgagatggttcaagaatggtagatacagatttattctcccatacca
gi|16 : tatctcaaataatgttcagatttatatcgctgttagagctttcatacctgtaacgtaaCTATTTT-GT---ATAAGTATCTAA------GGC------CCT-ATA-----ATTT-CC-C-------TTAATCTTCAACTTTTATTGCATATTT------TAAG----TTTTTT-CA--------TGTTTT-----AAAAAAA-TCGCTGTACGGATTTCAAATAATACGCACG-TGCGTATGTGCATATC----------GGGATCGACGGGca
gi|17 : TCAAA--TAATGTTCATATATATATGGCATGTAAACAAA--GCACATCAATACCTGTAACGTAATATGTGGAGAAAGTTATGGAATAAGGAACTGCGTTTTGAAATATTCGCCCTTTTGCAGCAAT
gi|18 : tattcCATCAACATTTATTTCATATTT------CCAT----GTTTTT-C---------TTTTTT-----AAAA-A--TCGCTGTACAAATTTCAAGTAATATGCATGTGGCTT-TGTGCACATCTATTTCCATGACGTTCGACGGGCat
gi|19 : CTTTAATTGCATATTT------CAAG----TTTTTT-TCGTTTTCGTTTTTTT-----AAAA-AAATTGCTGTTCGGGTTTAAAATGATACGCACG-TGCGTATCTGCGTATC----------GCGATCGAGGGGCct
gi|2 : TCTGTTACGACATCGATAATATCGCAGGTT-TGACGTTGCAA------CA-ACAGATAGA--GTGGTGCACAAGACGCTAACATGTGTTGAACAGCAACTAAAATCACGATGAAATCGAACTT-AAAAATGCAAGCTCTGTGGTTTGC-GCCTTAGAATGTCCA-TAATGGGATAAATCATCTAAGGCAGACGCCACTACCCTGAAAGGGGATAGAAATG-TATGAGGGCCTCTGCTCTAGTTGTCCGTCTTGTCTCACAAAGTG--------------CGTTTATTCCTTTCGTT---------------GTCAG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGCAAAGTGGTTA------AAA------GCGATATCTTTGACTTTGTCCATCATGTTTCATGCATATTGTTCTTTAGACGCATGAACGATCGTGAGATTAAGACAGTACGCCTTGCAGTTAACTTGTTATAAGGATTTAAATCTAAAGATGGTACCTGCTAGGA-A--------------------------CTTTGAACTTCAACAAACCAA-CGCGATCATTGTCCAATACGCGATCTTCAGTTTTGTCGTCAAATACATCGATATACGGTGGATCGATAGAATTTGAACATTCCGTCATGTTTAAATTTTCCGCGATTACAAACTTAAAAATATT---ATTCGGAAAATTTAATGTTTGGTCCCGATAGATCGTTCCAGTGTCTGTC--TATAACGTGTTGTAATGTTA------TACAGAAAAACCCTGACCGTTCGT---------ACATAA----TCATATATTTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA--TT-TT---ATAAACATTTAA------GG-------CCT-A-------ACCC-CC-T-------TTAAGTATCAACTTTTATTGCATATTT------CAAACTTTTTTTTT-T---------TTTTTT-----AAAA-AA-
gi|20 : ACTTTTATTGCATATTT------CAAG----TTTTTT-CC--------TTTTTT-----AAAA-AG-TCGCTGTACAGATTTAAAATGATACGC--------TA-ATGTGTATC----------ACAATCTACGAGC
gi|21 : AATACTCAGATGTCGTTTCAGCTT----GTACGT-TTGGTCTTCGTTGTGCGCGTCAAGC-------------------ATA----TACACTGGGGCGTGATGGTTCGACACctg
gi|22 : CGCGAAATAATGTTA------TACAGAAAGACCCTGCCCGTTCGT---------ACATAA----TC----AACTaa
gi|23 : GTTCTATTAACCAATTAACTGAATAGGT-AAAACACGGGCTTCCGTTACGGCCTCGACAAGATCACttcacgaaatattaggaaggtgttacctg
gi|24 : AAGC---ATTCGGA------AATATTCGGTTTCGATTGACCGTTCCAGGGTCTGTC--T
gi|3 : ATA----CATGTTGATTCTCCATTTCTCAAAAGTCGTTTGATCTTTGTTGTGCGCGTTC-------------------ACC-------------------GAA----TACACGGGGACTTGATGGTTCGATACCAACACCAGCTGTCAGGGAGACGGCTTTGTGATGTAATACACCACATACTAATGGGTCGTTCTATTCGCCAATTAATTGA-ACAGTTAGAATACAGGCTTGTGTTGCGGACACGATAAGATCGCAGATT-TTACTTTGAAAAAAAAACACACACACAGA--GTGGTACTCATTACGCTAACATTTTATGAACAGCAACTAAATTCACGATGAAATCGAACTT-CAAAATGCAAGCTCTGTGGTTTGCCGCTTTAGAGTATCCA-TGATGGAATAAATCATCCAAGGCAGACGTCATTACCCTGAAAGCGGACAGAAATG-TTTAAGGGCGTCCGCTTTATCTATCCATCTTGTCTCACAAAGTGACTGCATTTACGTTCATTGTTCTATTTCGTTACGTCGACTTACAGGGTCTA--CATTAAAATTGTTCTGAAAT----GCAGCCATTTCGCAGAGTAGTTA------AAA------GCGATCTTTTGGACTTTGCCCATCGTGTTTCGTGCCTAGTGTTCGTTAAACGCATGACCGATTGCGAGATTAAAACAGTGTACCATGCAATAATTTTTTTATAATTATTTAAATCTAAA
gi|3 : aATAA----TT----ATTTAAATCTAAATTTAAATTT-----AAAAAAGTAGCTTGATATTTTTT-TTGATATAAACATCTAAATCTAAGAC------CGT-A-------ATCC-CC-A-------T-AAGCATAAA-TTTTATTGCATATTT------CA-------TTTTT-C---------TTtttaaatttaaaaaagtagcttgatattttttttgatataaacatctaaatctaagaccgtaatccccataagcataaattttattgcatatttcatttttcttatatcttataatgtatgcatt
gi|4 : aatacatgttgattctccatttctcaaaagtcgtttgatctttgttgtgcgcgttcaccgaatacacggggacttgatggttcgataccaacaccagctgtcagggagacggctttgtgatgtaatacaccacatactaatgggtcgttctattcgccaattaattgaacagttagaatacaggcttgtgttgcggacacgataagatcgcagattttactttgaaaaaaaaacacacacacagagtggtactcattacgctaacattttatgaacagcaactaaattcacgatgaaatcgaacttcaaaatgcaagctctgtggtttgccgctttagagtatccatgatggaataaatcatccaaggcagacgtcattaccctgaaagcggacagaaatgtttaagggcgtccgctttatctatccatcttgtctcacaaagtgactgcatttacgttcattgttctatttcgttacgtcgacttacagggtctacattaaaattgttctgaaatgcagccatttcgcagagtagttaaaagcgatcttttggactttgcccatcgtgtttcgtgcctagtgttcgttaaacgcatgaccgattgcgagattaaaacagtgtaccatgcaataattttttt------GTGATCTCTTGGACTTTGTCCATCATATTTCGTGCATATTGTTTGTTAGACGCATGAACGATTGCCAGATTAAAACAGTGTGCCTTGCAATAAACGTTTTATATGAACTTATATCTAAAGATGGTACCTATTAGGA-AATTTGAAAGTGTGTACACTC-CCCCACTTTGA-TTTTTATAAACCAAGCGCGTTCATTGTCAAATATTCGATCTGCAGATTTGTCGTCAAATGCACCGATAT-CGGTGGATCGATAGAATTTGAACATTCCGCCATGTTTAAATTTTCCGCACTTACAAACTTAAACAAATT---ATTCGGA------AATGTTCGATCTCGATAAACCGTTCCAGAGTATGTC--TATAACGTGGAATGATGTTA------TACAGAAAGACCCTGACCGTTCGT---------ACATAATTATTC----ATCTAGATCTAAA----AG--------AAAAACGTTGCTTGATCTA-TTT-TT---ATAAACATCTAA------GGC------CCT-A-------ACCC-AC-C-------TTAatatcttataatgtatgcatt
gi|4 : TACGGATTTCAAATGATACGCACG-GGCGTATGTCCGTATC----------GCGATCcggatttcaaatgatacgcacgggcgtatgtccgtatcgcgatc
gi|5 : gtgatctcttggactttgtccatcatatttcgtgcatattgtttgttagacgcatgaacgattgccagattaaaacagtgtgccttgcaataaacgttttatatgaacttatatctaaagatggtacctattaggaaatttgaaagtgtgtacactcccccactttgatttttataaaccaagcgcgttcattgtcaaatattcgatctgcagatttgtcgtcaaatgcaccgatatcggtggatcgatagaatttgaacattccgccatgtttaaattttccgcacttacaaacttaaacaaattattcggaaatgttcgatctcgataaaccgttccagagtatgtctataacgtggaatgatgttatacagaaagaccctgaccgttcgtacataattattcatctagatctaaaagaaaaacgttgcttgatctatttttataaacatctaaggccctaacccacctCATCAGCTACCAAGAAGACGACTTTGTTATAAGGTACATCCCATTATAATAGGTCGTTCCGTTCACCAGTTACTTGA-TAAGTTAGAGCATGGGCTGCTGTTACGGTCTGGACAAGGTCACTAATT-TTACGTTGCAA------CA-ACAA--------------------CGCTAACATGTGTTGAACAGTAACTAAAGTCACGATGACGTCGAACTT-CAAAATGCAAGCTTTGTGGTTTGCCGTTTTAGAGTCCCGA-TGATAGGATATATCATCCGAGGCAGATGCCACTACCCTGACAGCGGATAGAAATG-TATGCGGAAGTTTGCTCTAGC------TCTAGCCGCACAACGTGACTGTAATTTCCTTCGTTTGTCCATTTCGTCA---CGACTTATAGTTTCTGTACATTAAGATTGTCCTGAAATTGCAGCAGCGGTTTCGTAGAGTAGTTA------AAAGTGAAGGCGATCTCTTGGACTTTGTCCATCATGTTCAGTGCATATTATTCTTTAGACGCATGAACGATCGC
gi|6 : GGTTGTTACGTTGCAA------CA-ACAAAGAGAATGTGGTGCACAAGACGCTAGC---TATTGAACAGCAACTAAAGTCACGATGAAATCGAACTTCAAAAATGC--GCTCTGTGATCTGCCGCTTTAGAGTATCCA-TGATGGGATGAATTATCCAAAGCAAATGCCACTACTCTGAAAGTGGATAGAAATG-TATGAGGGCATCCGCCCTAGCTGCCCA-----TCTCACTAAGAGTCTGCATTTTTGTGCGTTTGTCCATTTCATCA---CGACTTACAGGGTCTG--CATTAAGATTGTTCTGAAATTGTAGCAGCCGTTTTGC--AGTGGTT-------AAA------TCGACCTCTTGGACTTTGTACATCATGTTTCATGCATATTGTTCTTTGGA
gi|7 : atctatatggggccgacatcgggcctatatagaatgtttgctgTCAAA--TAATGTTCAGTTTTATA
gi|7 : aatgtccAAATTTATACGGCCTGTAAACATG--GAGCATCCACACCTGTAACGTAATTTGTGGAGAACGTTTTGGAATGACGAACTGCGCTTTGGAACCTTCGCCGTCTTGCAGCAATCTTGATTCAAGTTCTGTTCAGAGATGGTCCAAG-ATAG-----GCAGATACAATCATGTTGATTCTCCAGTACTCAGATATCGTTTCAGCTT----ATACGT-TTG-------------------ACCTTTGTTGTGCGCGTCCAGTGAA----AACACGGGGACATGATGGTTCGACACTAACACCAGCTGCCAGGGAAATGGCTTTATGGTGTAGTACACCaagcatgatgtgccaacaaaatttatacggcctgtaaacatggagcatccacacctgtaacgtaatttgtggagaacgttttggaatgacgaactgcgctttggaaccttcgccgtcttgcagcaatcttgattcaagttctgttcagagatggtccaagataggcagatacaatcatgttgattctccagtactcagatatcgtttcagcttatacgtttgacctttgttgtgcgcgtccagtgaaaacacggggacatgatggttcgacactaacaccagctgccagggaaatggctttatggtgtagtacaccac
gi|8 : aatgtcctcaaataatgttcagttttataaagcatgatgtgccaacaTGTAAATATATAGAGCATACATACCTGTAACGTAATTTGTGGAGAACGTTTTGAAATGAGGAACTGCGCTTTGAAACCTTCGCCGTCTTGCAGCAATTTTAATTCAAG-TCCGCTATGAGTTGGTCCTATAAT-G-----GTAGGTA----CATGTTGATTCTCCAATACTCAGATGTCGTTTCAGCTC----GTACGT-TCC-------------------AAC-------------------GAA----TACATAGGGACGTGATGGTCCGACACCAACATCAGCTACCAGGG----GGCTTTGTAATGGAATACACCCCATACTAATAGGTCGTTCCGTTCACTAATTAATTAT-TAAATac
gi|9 : AACAAAGC---ATTTGGA------AATGTTCGGTTTCGATAGACCGTTCGTAGATCTGTC--TATAACGCGAAATAGTGTTA------TACAGAAATACCCTGACCTTTCGT---------TCATAG----GC----TTCTAGATCTAAA----GG--------ATATAAGTTGCTTGATCTATTTTATT---ATAAACACCTAA------GGCACCAACCCC-ACCCTCGCACCC-CCTC-------TTAAGAATCAACTTTTATTGCATATTTTGCATATAAG----TTTTTT-C---------CTTTTTTTTAAAAAA-AA-TTGCAGTACGAATTTCAAATGATACGcggcgcgatattggct