lowQualScore : 111111 111111111111111111111
lowQualScore : 33 1 1 1 1 111111 222 1 1 11 22222222222222 1 5555555555555 11111111111 333333333333333333333 111111111 1 111111111 111111
lowQualScore : 6 22 7 6 7 7 6 5 555555 333 7 5 22 6 2 4 4 2 55555555555555 4 4 1 3 8888888888888 33 99999999999 3 5555 2 9 33 8 2 333333333333333333333 333333333 666 777 5 0 2 6 1 33 33 666666 000000000 999999 2 2 2 2
lowQualScore : . .. . . . . . . ...... ... . . .. . . . . . .............. . . . . ............. .. ........... . .... . . .. . . ..................... ......... ... ... . . . . . .. .. ...... ......... ...... . . . .
lowQualScore : 0 00 0 0 0 0 0 0 000000 000 0 0 00 0 5 0 0 5 88888888888888 4 4 8 9 8888888888888 44 88888888888 6 3333 4 6 99 7 3 555555555555555555555 333333333 888 777 0 2 7 6 4 77 77 444444 555555555 777777 4 4 0 9
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAAT------GAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGANANTANAANATGTCGGCTGCACATTG---NAC---A----C-T-GATATAGAAATATACAGTACT----N-T----CTG--CATTG--TG------AGACC----CA-TTTACTGGTGCAATCCGCCATTGGACCTCACCTGATA--TAGAAATATACAGTA-T-TCTG-A---ATATACAGTACTT----T----CTGCATTGTNAGAC-CCA-TTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATA--GAAATA------TACAGTACTT----T----CTGCATTGT-TA-GAC-CCA-TTTACTGG-TGCAATCCGCCATT
Reference ( gi|1 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTG---TAC---A----C-T-GATATATAAATATACAGTGCT----A-A----C-G--CATTG--TA------AGGTC----CA-TTTACTGGTGCAATCCGCCATTGGACCACACCTGATA--TATAAATATACAGTACTTTCTGCAAGTATATACAGTACTT----T----CTGCATTGTTAGGT-CCA-TTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATA--GAAATA------TACAGTACTT----T----CTGCATTGT-TG-GAT-CCA-TTTACTGG-TGCAATCCGCCATT
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAAT------GAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTG---TAC---A----C-T-GATATATAAATATACAGTGCT----T-T----CTG--CATTG--TA------AGGTC----CA-TTTACTGGTGCAATCTGCCAGTGGACCACACCAGATA--TATAAAT----------------------ATACAGTGCTT----T----CTGCA
gi|9 : aGGGAAAATATAAAATATCAGTTGCACAT-------C---AG---C-T-GATATACAAACATA--ATATT----ATA----A-G---ATTACTTACCTTCCGAGTC----CAATTTACTGGTGCAATCCATCATTGTACATCATCTGATA--TATGGACATATAG------CTG--------TATAGTATTA----C----CTGCATTGCTAGAC-CTA-TTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTA--agtat
gi|5 : ACATTG---TAC---AACATC-C-GATGTAAAGACATGTAA-GAT----A-A----C-ATTCATTA------------GTCGACACA-TTTACTGTTACAATCCGACATTGTACAACATCCGATG--TACAGACAT------------GTAAG-ATA-ACA-----T----T----C---ATTAGTCGAC-ACA-TTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACA--TAAATA------TATGATAC-----------CTGCATAAG-TA-GAC-CCA-TTTACTGG-TGCAGTCTGGCATT
gi|6 : gtagacacatttactggtgcaatccgCATTGGACCAC---A----CCT-GATATAGAAATATACAGTACT----T-T----CTG--CAATG--TT------AGATC----CA-TTTACTGGTGCAATCCGCCATTGGACCTCACCCGATA--TAGAAATATACAGAACTTTCTGCAggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|13 : cgcCATTG---GACCTCA----C-TTGATATAGAAATATACAGTACT----T-T----CTG--CATTG--TG------AGATC----AA-TTTACTGATGCAATCCGCCACTGGACCTCACCTttgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|10 : tcaatccgcCATTG---GAT---AT---C-T-GATATCAAAATACACAGTAGT----A-T----CTG--CATTT--TG------AGACC----CA-TTT-------------GCCATTGGAC
gi|12 : gaagtacttagtatctgcatttcgataccaatttactggtgcaatccgt----C-T-GATATAGAAAGATACAGTACT----T-T----CTG--CATTG--TT------AGATC----CA-TTTACTataatct
gi|14 : tactttctgtattgtgagacccattaactggtgcaatccgccattgggcctcat----C-T-GATATAGAAATATATAGTAGT----A-T----CTG--CATT--------------TC----TA-G--ACT----CA-TCCGCCATTGGACCTCACCTGATA--TAGAAAGATACAATACTT
gi|17 : ctcat----C-T-GATATAGAAATATACAGTACT----
gi|4 : tgggcctcacAAA-ATACAGTACTT---A-AGATCT-G--CATTT--TG------AGACC----CA-ATTACTGGTGCAGTCCGCCATTGTACttttgcattg
gi|15 : ATGTACAGTACTTTGTA-T----CTG--CATTT--CG------AGACC----CA-TT-ACTGGTGCAATCCGatcaaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|8 : TATACAGTATT----T-T----CTG--CATTG--TA------AGATC----CA-TTTACTGGTGCAATCTGCCACTGGACCTCATCTGATA--TAGAAATAT-----------------TA-AT----TACTT----T----CTGCATTGTTAGAT-CCA-TTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATA--GAAAAA------TGCAGTACTT----T----CATCATTGT-GA-GAT-TCA-TTAACTGG-TGCAATCCGCCACT
gi|7 : TATACAGTATT----T-T----CTG--CATTG--TA------AGATC----CA-TTTACTGGTGCAATCTGCCACTGGACCTCATCTGATA--TAGAAATAT-----------------TA-AT----TACTT----T----CTGCATTGTTAGAT-CCA-TTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATA--GAAAAA------TGCAGTACTT----T----CATCATTGT-GA-GAT-TCA-TTAACTGG-TGCAATCCGCCACTggacctcac
gi|16 : TGTACAGTACTTTGTA-T----CTG--CATTT--CG------AGACC----CA-TT-ACTGGTGCAATCCGggacctcac
gi|3 : TACAGTAGT----A-T----CTG--CATTT--CG------AGACC----CA-TTTACTCGTGCAATCTGCAATT
gi|12 : -G--TATTG--TG------AGACC----CA-TTAACTGGTGCAATCCGCCATTGGGCCTCATCTGATA--TAGAAAGATACAGTACTTTCTG------------------------------CATTGTTAGAT-CCA-TTTACTactcatcgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|11 : tactttct--CATT---CA------AGACC----CA-GTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTATA
gi|10 : caacacctcA-TTTACTGGTGCAATCCGTCATTGG---ATATCTGATA--TCAAAATACACAGTAGTATCTGCAgtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : gaagtacttagtatctgcatttcgataccaCAATCCGCCATTGGACCTCACTTGATA--TAGAAAT----------------------ATACAGTACTT----T----CTGCATTGTGAGAT-CAA-TTTACTGA-TGCAATCCGCCACTGGACCTCACCTttttgagacccatttgccattggacataatct
gi|6 : tCGCCATTGGACCACACCTGATA--TAGAAAT----------------------ATACAGTACTT----T----CTGCAATGTTAGAT-CCA-TTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATA--GAAATA------TACAGAACTT----T----CTGCATTGTATG-GA
gi|17 : TGGGCCTCACCTGATA--TAGAAATATACAGTACTTTTTGCAatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|9 : CAGCTGATA--TACAAACATA--ATATTAT----AAG-AT-TAC-TTACCT----T----CCG--------AGT-CCAATTTACTGG-TGCAATCCATCATTGTACATCATCTGA--TATATGGACATATAGCTGTATAGTATTA----C----CTGCATTGC-TA-GAC-CTA-TTTACTAACTGCAATCCATCATTttg
gi|2 : gggaaaatataaaatatcagttgcacatATATACAGTGCTT----T----CTGCATTGTAAGGT-CCA-TTTACTGG-TGCAATCTGCCAGTGGACCACACCAGA--TATA--TAAATA------TACAGTGCTT----T----CTGCAgtacatcatctgatgta
gi|14 : atatatgttcaagtttacaccttgccaaatatcttttgtaaaaagttgttttgttgtttattataaaatccaaacttgtcatccatacagttgtccaagcaataagaatattttggagaaaaacatttttcagtattcgatttatttcattacagttaatttcacattcgaacataagattaagcagttttatatcatataaaacactaaagggataatgtgaaagtatacaataagcagctttacttacttcatatttccttcaatgttgactgcgaactttgcataaatcatgaaaacatatatattgctgtatttttaatgagtactaatgaaataaataaaagttgaaacaattgtattttttatgttatttatgtcgtgcttcaaaaatgatttcctcctaatagttgtcatgggacattaaaacatgtcggctgcacattgtacactgatatataaATATATAGTAGTA----T----CTGCATTTCTAG----------ACTC------ATCCGCCATTGGACCTCACCTGA--TATA--GAAAGA------TACAATACTT----agtat
gi|15 : ctcatctgatatagaaATGTACAGTACTT----TGTATCTGCATTTCGAGAC-CCA-TT-ACTGG-TGCAATCCG
gi|16 : TGTACAGTACTT----TGTATCTGCATTTCGAGAC-CCA-TT-ACTGG-TGCAATCCG
gi|4 : ATACAGTACTTAAGAT----CTGCATTTTGAGAC-CCA-ATTACTGG-TGCAGTCCGCCATTGTAC
gi|3 : aaaTACAGTAGTA----T----CTGCATTTCGAGAC-CCA-TTTACTCG-TGCAATCTGCAATTatcaaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|10 : AGTACTTAGTAT----CTGCATT--TCGATACCAATTTACTGG-TGCAATCCGTCATTGGAT---ATCTGA--TATC--AAAATA------CACAGTAGTA----T----CTGCATT-T-TGAGAC-CCA-TTTGCactcatcgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|12 : gaTACTT----T----CTGTATTGTGAGAC-CCA-TTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATA--GAAAGA------TACAGTACTT----T----CTGCATTGT-TA-GAT-CCA-TTTACTcattggacataatct
gi|13 : AATCCGCCATTGGACCTCACTTGA--TATA--GAAATA------TACAGTACTT----T----CTGCATTGT-GA-GAT-CAA-TTTACTGA-TGCAATCCGCCACT
gi|6 : tcCGCCATTGGACCACACCTGA--TATA--GAAATA------TACAGTACTT----T----CTGCAATGT-TA-GAT-CCA-TTTACTGG-TGCAATCCGCCATTggacctcacct
gi|2 : CATTG---TACAC-TGA--TATA--TAAATA------TACAGTGCTT----T----CTGCATTGT-AA-GGT-CCA-TTTACTGG-TGCAATCTGCCAggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|17 : atatatgttcaagtttacaccttgccaaatatcttttgtaaaaagttgttttgttgtttattataaaatccaaacttgtcatccatacagttgtccaagcaataagaatattttggagaaaaacatttttcagtattcgatttatttcattacagttaatttcacattcgaacataagattaagcagttttatatcatataaaacactaaagggataatgtgaaagtatacaataagcagctttacttacttcatatttccttcaatgttgactgcgaactttgcataaatcatgaaaacatatatattgctgtatttttaatgagtactaatgaaataaataaaagttgaaacaattgtattttttatgttatttatgtcgtgcttcaaaaatgatttcctcctaatagttgtcatgggacattaaaacatgtcggctgcaTGGGCCTCACCTGA--TATA--GAAATA------TACAGTACTT----T----TTGCATTGgtggaccacaccagatatataaatatacagtgctttctgcaagtat
gi|14 : CATCTGA--TATA--GAAATA------TATAGTAGTA----T----CTGCATTTC-TA-GAC-TCA-T
gi|4 : ctAAA-A------TACAGTACTTAAGAT----CTGCATT-T-TGAGAC-CCA-ATTACTGG-TGCAGTCCGCCATTccgccattggacctcacctgatatagaaagatacaatactt
gi|15 : ATG------TACAGTACTT----TGTATCTGCATT-T-CGAGAC-CCA-TT-ACTGG-TGCAATCCGgtacatcaaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|16 : TG------TACAGTACTT----TGTATCTGCATT-T-CGAGAC-CCA-TT-ACTGG-TGCAATCCG
gi|3 : ------TACAGTAGTA----T----CTGCATT-T-CGAGAC-CCA-TTTACTCG-TGCAATCTGCAATT
gi|10 : AGTACTTAGTAT----CTGCATT---TC-GATACCAATTTACTGG-TGCAATCCGTCATTactcatcgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|12 : gaTACTT----T----CTGTATTGT-GA-GAC-CCA-TTAACTGG-TGCAATCCGCCATTggatatctgatatcaaaatacacagtagtatctgcattttgagacccatttgccattggacataatct
gi|11 : -GAC-CCA-GTTGCTGG-TGCAATCCTCCATTgggcctcatctgatatagaaagatacagtactttctgcattgttagatccatttact
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 555555 33333333 111 1111111111 1111 111111111111111111111111111 1111 1111
lowQualScore : 66 4 4 4 3 777777 4 2 4 3 1 1 1 1 3 22222222 5 000 888888 1 4444444444 2222 2 2 1 0 4 777777777777777777777777777 7777 3 1 3 0 0000 44 55 4 0 0000
lowQualScore : .. . . . . ...... . . . . . . . . . ........ . ... ...... . .......... .... . . . . . ........................... .... . . . . .... .. .. . . ....
lowQualScore : 55 0 0 0 0 555555 0 5 0 0 0 0 0 0 0 33333333 0 222 222222 7 2222222222 1111 9 5 5 6 6 666666666666666666666666666 7777 3 0 1 7 8888 11 55 0 9 6666
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTAC---A----CC-GATATA--NAAATATA------CAGTACTN----T----CTGCATT-N--CGAGACCCA-TTTACTGGTGCAATC-CGCCATTGGACCTCACCTGATATAGAAATATACAGT------TG-A---ATATACAGTACTT----TCTGCATT-GTNAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA----TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGANANTANAANATGTCGGCTGCACATTGNAC---A----CT-GATATA--GAAATATA------CAGTACTN----T----CTGCATT-G--TGAGACCCA-TTTACTGGTGCAATC-CGCCATTGGACCTCACCTGATATAGAAATATACAGTA--TTCTG-A---ATATACAGTACTT----TCTGCATT-GTNAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA----TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTAC---A----CT-GATATA--TAAATATA------CAGTGCTA----A----C-GCATT-G--TAAGGTCCA-TTTACTGGTGCAATC-CGCCATTGGACCACACCTGATATATAAATATACAGTACTTTCTGCAAGTATATACAGTACTT----TCTGCATT-GTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA----TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : AGTACTTAGTATCTGCATT-TCGATACCAATTTACTGG-TGCAATCCGTCATTGGA---TATCTGA----TATCAAAAT-ACACA--GT-AGTATCTGCATTTTG----AGACCCATTTGC
gi|10 : gaCATTGGAT---AT---CT-GATATC--AAAATACA------CAGTAGTA----T----CTGCATT-T--TGAGACCCA-TTT--------------GCCATTGGACATAATCTcattggacataatct
gi|11 : gaagtacttagtatctgcatttcgataccaatttactggtgcaatccgtCTCCATT--CAAGACCCAGTTGCTGG-TGCAATCCTCCATTTTACATCATCTGACAGCTATAG
gi|12 : caacacTACTT----TCTGTATT-GTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA----TATAGAAAG-ATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATC-CGCCATTGGACCTCACTTGATATAGAAATA----------------------TACAGTACTT----TCTGCATT-GTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : t----CT-GATATA--GAAATATA------TAGTAGTA----T----CTGCATT-T--CTAGACTCA-T-------------C-CGCCATTGGACCTCACCTGATATAGAAAGATACAATA--CT
gi|15 : ctcatATGTA------CAGTACTT----TGTATCTGCATT-T--CGAGACCCA--TTACTGGTGCAATC-CGt
gi|16 : TGTA------CAGTACTT----TGTATCTGCATT-T--CGAGACCCA--TTACTGGTGCAATC-CG
gi|17 : TGGGCCTCACCTGA----TATAGAAAT-ATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTAC---A----CT-GATATA--TAAATATA------CAGTGCTT----T----CTGCATT-G--TAAGGTCCA-TTTACTGGTGCAATC-TGCCAGTGGACCACACCAGATATATAAATATACAGTGCTTTCTG-
gi|3 : aTA------CAGTAGTA----T----CTGCATT-T--CGAGACCCA-TTTACTCGTGCAATC-TGCAATTA---CTCATCcaagtat
gi|4 : AAA-ATA------CAGTACTTAAGAT----CTGCATT-T--TGAGACCCA-ATTACTGGTGCAGTC-CGCCATTGTACATCAAATGACAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : AGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA----TGTAAAGAC-ATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTgcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gtACATTGTAC---AACATCC-GATGTA--AAGACATG------TAAGATAA----C----ATTCATTAG--TC-GACACA-TTTACTGTTACAATC-CGACATTGTACAACATCCGATGTACAGACAT---GTA------------AGATA----ACAT----TC---ATTAGTC-GACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATG--TACATAAAT-ATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTAC---AACATCC-GATGTACAGACATGTA------AGATAACA----T----T--CATTAG--TC-GACACA-TTTACTGGTGCAATC-CGACATTGTACATCATCTGATGTA--------CA--------TA-A---ATATATGATAC-------CTGCATA-AGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA----TATAG---TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccg-CGCCATTGGACCACACCTGATATAGAAATA----------------------TACAGTACTT----TCTGCAAT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA----TATAGAAAT-ATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : CATTGGACCTCA----CCCGATATA--GAAATATA------CAGAACTT----T----CTGCATT-GTATGGAATCGAATCGAATGG---AATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN-N---NNNNNNNNNNNNN----NNNNNNNN-NNGAGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA----atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgcTATA------CAGTATTT----T----CTGCATT-G--TAAGATCCA-TTTACTGGTGCAATC-TGCCACTGGACCTCATCTGATATAGAAATAT-----------T--A---AT------TACTT----TCTGCATT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA----TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATA------CAGTATTT----T----CTGCATT-G--TAAGATCCA-TTTACTGGTGCAATC-TGCCACTGGACCTCATCTGATATAGAAATAT-----------T--A---AT------TACTT----TCTGCATT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA----TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT----C---AG---CT-GATATA--CAAACATAATATTATAAGATTA----C----TTACCTT-C--CGAGTCCAA-TTTACTGGTGCAATC-CATCATTGTACATCATCTGATATATGGACATATAG------CTG--------TATAGTATTA----CCTGCATT-GCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA----TGTAggacctcac
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 333333 3333 1111111111 0000000000000000000000000 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0000 5 1 888888 6666666666 8888 33 1 33 3 0 2 6666 5 0000000000000000000000000 6666 3 1 3 44 55 55 3 0000
lowQualScore : .. . . . . ...... . . . . .... . . ...... .......... .... .. . .. . . . .... . ......................... .... . . . .. .. .. . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 0000 7 0 888888 1111111111 6666 99 6 99 3 7 0 5555 5 8888888888888888888888888 5555 3 0 1 22 11 00 6 6666
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CC-GATATANAAATATA------CAGTACTN----T----CTGCATTNCG-AGACCC--ATTTACTGG--TGCAATCCGCCATTGGACCTCATCTGA----TATAGAAATAT--AG-------T--A---ATATACAGTACTT----TCTGCATT-GTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CC-GATATANAAATATA------CAGTACTN----T----CTGCATTNCG-AGACCC--ATTTACTGG--TGCAATCCGCCATTGGACCTCACCTGA----TATAGAAATATACAGT------TG-A---ATATACAGTACTT----TCTGCATT-GTNAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CT-GATATATAAATATA------CAGTGCTA----A----C-GCATTGTA-AGGTCC--ATTTACTGG--TGCAATCCGCCATTGGACCACACCTGA----TATATAAATATACAGTACTTTCTGCAAGTATATACAGTACTT----TCTGCATT-GTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : AGTACTTAGTATCTGCATT-TCGATACCAATTTACTGG-TGCAATCCGTCATTGGA---TATCTGA--TATCAAAAT-ACACA--GT-AGTATCTGCATTTTG----AGACCCATTTGC
gi|10 : gaCATTGGATA----TCTGATATCAAAATACA------CAGTAGTA----T----CTGCATTTTG-AGACCC--ATTT---------------GCCATTGGACATAATCTcattggacataatct
gi|11 : gaagtacttagtatctgcatttcgataccaatttactggtgcaatccgt----CTCCATT-CA-AGACCC--AGTTGCTGG--TGCAATCCTCCATTTTACATCATCTGACAGCTATAG
gi|12 : caacacTACTT----TCTGTATT-GTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAG-ATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TATAGAAATA----------------------TACAGTACTT----TCTGCATT-GTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TATAGAAATATATAGT-------------------AGTA-------TCTGCATT-TCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAG-ATACA--AT-ACTT
gi|15 : ATGTA------CAGTACTT----TGTATCTGCATTTCG-AGACCC--A-TTACTGG--TGCAATCCG
gi|16 : TGTA------CAGTACTT----TGTATCTGCATTTCG-AGACCC--A-TTACTGG--TGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAAT-ATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAAT------GAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CT-GATATATAAATATA------CAGTGCTT----T----CTGCATTGTA-AGGTCC--ATTTACTGG--TGCAATCTGCCAGTGGACCACACCAGA----TATA------------------TA-A---ATATACAGTGCTT----TCTGCA
gi|3 : aTA------CAGTAGTA----T----CTGCATTTCG-AGACCC--ATTTACTCG--TGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATA------CAGTACTTAAGAT----CTGCATTTTG-AGACCC--AATTACTGG--TGCAGTCCGCCATTGTACATCAAATGA----CAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : AGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGAC-ATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTgcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gtACATTGTACAACATCC-GATGTAAAGACATG------TAAGATAA----C----ATTCATTAGT-CGACAC--ATTTACTGT--TACAATCCGACATTGTACAACATCCGA----TGTACAGACAT---GT---------A---AGATA----ACAT----TC---ATTAGTC-GACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAAT-ATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCC-GATGTACAGACATG------TAAGATAA----C----ATTCATTAGT-CGACAC--ATTTACTGG--TGCAATCCGACATTGTACATCATCTGA----TGTA--------CA--------TA-A---ATATATGATAC-------CTGCATA-AGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG---TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TATAGAAATA----------------------TACAGTACTT----TCTGCAAT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAAT-ATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : ----CC-GATATAGAAATATA------CAGAACTT----T----CTGCATTGTATGGAATCGAATCGAATGGAATGGNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNN------NN-N---NNNNNNNNNNNNN----NNNNNNNN-NNGAGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacTATA------CAGTATTT----T----CTGCATTGTA-AGATCC--ATTTACTGG--TGCAATCTGCCACTGGACCTCATCTGA----TATAGAAATAT-----------T--A---AT------TACTT----TCTGCATT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATA------CAGTATTT----T----CTGCATTGTA-AGATCC--ATTTACTGG--TGCAATCTGCCACTGGACCTCATCTGA----TATAGAAATAT-----------T--A---AT------TACTT----TCTGCATT-GTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT----CAG---CT-GATATACAAACATAATATTATAAGATTA----C----TTACCTTCCG-AGTCCA--ATTTACTGG--TGCAATCCATCATTGTACATCATCTGA----TATATGGACATATAGC------TG--------TATAGTATTA----CCTGCATT-GCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac
Alignments
lowQualScore : 333333 4444 111111 2222222222 111111 555555555555 2222222222222222222222 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0 2222 1 0 000000 5555555555 4 2 3 00 7777 000000 222222222222 9999999999999999999999 3 44 66 55 4 0 0 2222
lowQualScore : .. . . . . ...... . . . . . .... . . ...... .......... . . . .. .... ...... ............ ...................... . .. .. .. . . . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 8 0000 0 4 555555 2222222222 0 4 5 99 1111 666666 777777777777 6666666666666666666666 1 66 55 55 0 9 1 1111
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATA------CAGTACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT--TAATATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAAN-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CCGATATANAAATATA------CAGTACTN----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATATAGTAATATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATA------CAGTGCTA----A----C-GCATTGTAAGGTCCATTTACTGGTGCAATCCGCCATTGGACCACACCTGA----TAT------ATA----AATATACAGTACTTTCTGCAAGTATATACAGTACTTTCTGCATTGTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAAT-ATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : AGTACTTAGTAT----CTGCATTTCGATACCAATTTACTGGTGCAATCCGTCATTGGA---TATCTGA----TATC--AA--------AATACACAGTAGTATCTG----------------------CATTTTGAGACCCATTT--------------GCCATTGGACATAATCT
gi|11 : ga----CTCCATT-CAAGACCCAGTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTATA--G
gi|12 : caacacTACTTTCTG----------------------TATTGTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAG-ATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TATA--GAAATA--------TACAGTACTTTCTG----------------------CATTGTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TATA--GAAATATA-TAGTA----GTA---TCTG----------------------CATTTCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAG-ATACA--AT-ACTT
gi|15 : ATGTA------CAGTACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|16 : TGTA------CAGTACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAAT-ATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATA------CAGTGCTT----T----CTGCATTGTAAGGTCCATTTACTGGTGCAATCTGCCAGTGGACCACACCAGA----TAT------ATA----AATATACAGTGCTTTCTG----------------------CA
gi|3 : aTA------CAGTAGTA----T----CTGCATTTCGAGACCCATTTACTCGTGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATA------CAGTACTTAAGAT----CTGCATTTTGAGACCCAATTACTGGTGCAGTCCGCCATTGTACATCAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : TAGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGAC-ATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gACATTGTACAACATCCGATGTAAAGACATG------TAAGATAA----C----ATTCATTAGTCGACACATTTACTGTTACAATCCGACATTGTACAACATCCGA----TGTA--CAGACAT-GTAAGATA----ACATT-------------------------CATTAGTCGACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAAT-ATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCCGATGTACAGACATG------TAAGATAA----C----ATTCATTAGTCGACACATTTACTGGTGCAATCCGACATTGTACATCATCTGA----TGTA------CATA--AATATATGATAC---CTG----------------------CATAAGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG---TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TATA--GAAATA--------TACAGTACTTTCTG----------------------CAATGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAAT-ATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : AGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTATA------CAGTATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATAT--TAAT------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATA------CAGTATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATAT--TAAT------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAA-ATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT----CAG---CTGATATACAAACATAATATTATAAGATTA----C----TTACCTTCCGAGTCCAATTTACTGGTGCAATCCATCATTGTACATCATCTGA----TATATGGACATATAGC--TGTATAGTATTACCTG----------------------CATTGCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac
Alignments
lowQualScore : 333333 2222 1111111111 222222222 111111 3333333 2222222222222222222222 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0 1111 1 0 1111111111 44 6 444444444 0 4 2 3 00 7777 222222 1111111 3 9999999999999999999999 3 44 1 55 4 0 0 2222
lowQualScore : .. . . . . ...... . . . . . .... . . .......... .. . ......... . . . . .. .... ...... ....... . ...................... . .. . .. . . . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 8 4444 4 4 0000000000 66 7 555555555 3 0 4 5 99 1111 666666 9999999 5 6666666666666666666666 1 66 0 55 0 9 1 1111
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT--AATATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-TAATATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTA----A----C-GCATTGTAAGGTCCATTTACTGGTGCAATCCGCCATTGGACCACACCTGA----TAT------ATA---AATATACAGTACTTTCTGCAAGTATATACAGTACTTTCTGCATTGTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAATATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : -------A--G--T-ACTTAGTAT----CTGCATTTCGATACCAATTTACTGGTGCAATCCGTCATTGGA---TATCTGA----TATC--AA-------AATACACAGTAGTATCTG----------------------CATTTTGAGACCCATTT--------------GCCATTGGACATAATCT
gi|11 : ga----CTCCATT-CAAGACCCAGTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTATA--G
gi|12 : caacacTACTTTCTG----------------------TATTGTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAGATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CATTGTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TATA--GAAATAT-------ATAGTAGTATCTG----------------------CATTTCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAGATACA--AT-ACTT
gi|15 : ATGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|16 : TGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAATATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTT----T----CTGCATTGTAAGGTCCATTTACTGGTGCAATCTGCCAGTGGACCACACCAGA----TAT------ATA---AATATACAGTGCTTTCTG----------------------CA
gi|3 : aTAC-------A--G--T-AGTA----T----CTGCATTTCGAGACCCATTTACTCGTGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATAC-------A--G--T-ACTTAAGAT----CTGCATTTTGAGACCCAATTACTGGTGCAGTCCGCCATTGTACATCAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : TAGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGACATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gACATTGTACAACATCCGATGTAAAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGTTACAATCCGACATTGTACAACATCCGA----TGTA--CAGACATGTAAGATA----ACATT-------------------------CATTAGTCGACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAATATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCCGATGTACAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGGTGCAATCCGACATTGTACATCATCTGA----TGT------ACAT-AAATATATGATAC---CTG----------------------CATAAGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG--TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CAATGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAATATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : AGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATAT-TAAT------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATAT-TAAT------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT-------CAGCTGATATACAAACATAATATTATAA--GATT-ACTT-----------ACCTTCCGAGTCCAATTTACTGGTGCAATCCATCATTGTACATCATCTGA----TATATGGACATAT-AGCTGTATAGTATTACCTG----------------------CATTGCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac
Alignments
lowQualScore : 333333 2222 1111111111 222222222 1111 3333333 2222222222222222222222 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0 1111 1 0 1111111111 44 6 444444444 0 4 2 3 00 1111 999 6 0000000 3 9999999999999999999999 3 44 1 55 4 0 0 2222
lowQualScore : .. . . . . ...... . . . . . .... . . .......... .. . ......... . . . . .. .... ... . ....... . ...................... . .. . .. . . . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 8 4444 4 4 0000000000 66 7 555555555 3 0 4 5 99 7777 888 4 5555555 5 6666666666666666666666 1 66 0 55 0 9 1 1111
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-AA-TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-AA-TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTA----A----C-GCATTGTAAGGTCCATTTACTGGTGCAATCCGCCATTGGACCACACCTGA----TAT------ATA--AA-TATACAGTACTTTCTGCAAGTATATACAGTACTTTCTGCATTGTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAATATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : -------A--G--T-ACTTAGTAT----CTGCATTTCGATACCAATTTACTGGTGCAATCCGTCATTGGA---TATCTGA----TATC--AA------AA-TACACAGTAGTATCTG----------------------CATTTTGAGACCCATTT--------------GCCATTGGACATAATCT
gi|11 : ga----CTCCATT-CAAGACCCAGTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTATA--G
gi|12 : caacacTACTTTCTG----------------------TATTGTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAGATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CATTGTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TATA--GAAATAT-A------TAGTAGTATCTG----------------------CATTTCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAGATACA--AT-ACTT
gi|15 : ATGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|16 : TGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAATATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTT----T----CTGCATTGTAAGGTCCATTTACTGGTGCAATCTGCCAGTGGACCACACCAGA----TAT------ATA--AA-TATACAGTGCTTTCTG----------------------CA
gi|3 : aTAC-------A--G--T-AGTA----T----CTGCATTTCGAGACCCATTTACTCGTGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATAC-------A--G--T-ACTTAAGAT----CTGCATTTTGAGACCCAATTACTGGTGCAGTCCGCCATTGTACATCAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : TAGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGACATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gACATTGTACAACATCCGATGTAAAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGTTACAATCCGACATTGTACAACATCCGATG--TACA--GACATGT-AA-GATA----ACATT-------------------------CATTAGTCGACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAATATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCCGATGTACAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGGTGCAATCCGACATTGTACATCATCTGA----TGT----ACATA--AA-TATATGATAC---CTG----------------------CATAAGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG--TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CAATGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAATATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : AGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATATTAA-T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATATTAA-T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT-------CAGCTGATATACAAACATAATATTATAA--GATT-ACTT-----------ACCTTCCGAGTCCAATTTACTGGTGCAATCCATCATTGTACATCATCTGA----TATATGGACATAT-AGCTGTATAGTATTACCTG----------------------CATTGCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac
Alignments
lowQualScore : 333333 2222 1111111111 222222222 1111 3333333 2222222222222222222222 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0 1111 1 0 1111111111 44 6 444444444 0 4 2 3 00 1111 999 6 0000000 3 9999999999999999999999 3 44 1 55 4 0 0 2222
lowQualScore : .. . . . . ...... . . . . . .... . . .......... .. . ......... . . . . .. .... ... . ....... . ...................... . .. . .. . . . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 8 4444 4 4 0000000000 66 7 555555555 3 0 4 5 99 7777 888 4 5555555 5 6666666666666666666666 1 66 0 55 0 9 1 1111
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-AA-TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-AA-TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTA----A----C-GCATTGTAAGGTCCATTTACTGGTGCAATCCGCCATTGGACCACACCTGA----TAT------ATA--AA-TATACAGTACTTTCTGCAAGTATATACAGTACTTTCTGCATTGTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAATATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : -------A--G--T-ACTTAGTAT----CTGCATTTCGATACCAATTTACTGGTGCAATCCGTCATTGGA---TATCTGA----TATC--AA------AA-TACACAGTAGTATCTG----------------------CATTTTGAGACCCATTT--------------GCCATTGGACATAATCT
gi|11 : ga----CTCCATT-CAAGACCCAGTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTATA--G
gi|12 : caacacTACTTTCTG----------------------TATTGTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAGATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CATTGTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TATA--GAAATAT-A------TAGTAGTATCTG----------------------CATTTCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAGATACA--AT-ACTT
gi|15 : ATGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|16 : TGTAC-------A--G--T-ACTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAATATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA----CTGATATATAAATATAC-------A--G--T-GCTT----T----CTGCATTGTAAGGTCCATTTACTGGTGCAATCTGCCAGTGGACCACACCAGA----TAT------ATA--AA-TATACAGTGCTTTCTG----------------------CA
gi|3 : aTAC-------A--G--T-AGTA----T----CTGCATTTCGAGACCCATTTACTCGTGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATAC-------A--G--T-ACTTAAGAT----CTGCATTTTGAGACCCAATTACTGGTGCAGTCCGCCATTGTACATCAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : TAGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGACATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gACATTGTACAACATCCGATGTAAAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGTTACAATCCGACATTGTACAACATCCGATG--TACA--GACATGT-AA-GATA----ACATT-------------------------CATTAGTCGACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAATATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCCGATGTACAGACATGT-------AAGA--TAACAT----T-------CATTAGTCGACACATTTACTGGTGCAATCCGACATTGTACATCATCTGA----TGT----ACATA--AA-TATATGATAC---CTG----------------------CATAAGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG--TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TATA--GAAATA-------TACAGTACTTTCTG----------------------CAATGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAATATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : AGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATATTAA-T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATAC-------A--G--T-ATTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TATA--GAAATATTAA-T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT-------CAGCTGATATACAAACATAATATTATAA--GATT-ACTT-----------ACCTTCCGAGTCCAATTTACTGGTGCAATCCATCATTGTACATCATCTGA----TATATGGACATAT-AGCTGTATAGTATTACCTG----------------------CATTGCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac
blockSeqs : GT T A T T . A G T T ACAT T TATTATAA AT A AGTAT T T G CAGC ATG A TAGCTG C . C TG G AG A TTCG
blockSeqs : ACAT A AAG . A TGTAT T G T TG C A TAAGA C . . . G . . .
blockSeqs : CAG C AAG . . TGTAT T T G . A C TTAAT T . . . T . . .
blockSeqs : . C A . . AAGAT G T G . A C TTAAT C . . . C . . .
blockSeqs : A . . T T A T . A A AATA T . . . T . . .
blockSeqs : A . . T T T T . A A AATA C . . . G . . .
blockSeqs : A . . T A T T . A A AATA T . . . T . .
blockSeqs : A . . T A T G . A C TA . . . . A . .
blockSeqs : A . . T G T G . A . . . . . . A . .
blockSeqs : A . . T G T G . . . . . . . .
blockSeqs : A . . . C . T . . . . .
blockSeqs : . . . .
blockSeqCons : CA** A** AATA*** **********************
originalCons : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAT-AA-TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
finalCons : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACACA--CCGATATACAAATATAC-------A--G--T-ACTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TATA--GAAATAAATA---TACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Alignments
lowQualScore : 333333 3333333 1111111 11 222222222 2222222222222222222 2222222222222222222222 1111
lowQualScore : 22 1 1 1 1 000000 1 1 1 1 0 2222222 1 0 0000000 33 6 444444444 4 4 2 3 00 7777 6666666666666666666 3 9999999999999999999999 3 44 1 55 4 0 0 2222
lowQualScore : .. . . . . ...... . . . . . ....... . . ....... .. . ......... . . . . .. .... ................... . ...................... . .. . .. . . . ....
lowQualScore : 00 0 0 0 0 000000 0 0 0 0 8 4444444 4 4 8888888 88 7 555555555 2 0 4 5 99 1111 8888888888888888888 5 6666666666666666666666 1 66 0 55 0 9 1 1111
consensus : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACAACATCCGATATACAAATATAC-------AG--TA-CTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TAT-A--GAAATA---AA--TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
Reference ( family-2605 ) : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCANNATTCGATTTATNTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCNGCTNTACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTNTTAATGAGTACTAATATAACTGAAATAAATAANANTTGAAACAATTGNATTTTTTATGTTATTNATGTCGTGCTTCAAAAACGATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGTACA-CA-CCGATATACAAATATAC-------AG--TA-CTT----T----CTGCATTNCGAGACCCATTTACTGGTGCAATCCGCCATTGGACCTCATCTGA----TAT-A--GAAATA---AA--TATACAGTACTTTCTG----------------------CATTGTTAGACCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCTGA--TATAGAAANATACA--GT-ACTTTCTGCATTGTT----AGACCCATTTACTGGTGCAATCCGCCATT
gi|1 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAGTAAGAATATTTTGGAGAAAAACATTTTTCATAATTCGATTTATATCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTACATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCTGCTATACTTGCTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTGTTAATGAGTACTAATATAACTGAAATAAATAATATTTGAAACAATTGAATTTTTTATGTTATTGATGTCGTGCTTCAAAAACAATTTCCTCCTAATGGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGT--A-CA-CTGATATATAAATATAC-------AG--TG-CTA----A----C-GCATTGTAAGGTCCATTTACTGGTGCAATCCGCCATTGGACCACACCTGA----TAT-------ATA---AA--TATACAGTACTTTCTGCAAGTATATACAGTACTTTCTGCATTGTTAGGTCCATTTACTGG-TGTAATCCGCCATTGGACCACACCTGA--TATAGAAATATACA--GT-ACTTTCTGCATTGTT----GGATCCATTTACTGGTGCAATCCGCCATT
gi|10 : -------AG--TA-CTTAGTAT----CTGCATTTCGATACCAATTTACTGGTGCAATCCGTCATTGGA---TATCTGA----TATCA-------A---AA--TACACAGTAGTATCTG----------------------CATTTTGAGACCCATTT--------------GCCATTGGACATAATCT
gi|11 : ga----CTCCATT-CAAGACCCAGTTGCTGGTGCAATCCTCCATTTTACATCATCTGACAGCTAT-A--G
gi|12 : caacacTACTTTCTG----------------------TATTGTGAGACCCATTAACTGG-TGCAATCCGCCATTGGGCCTCATCTGA--TATAGAAAGATACA--GT-ACTTTCTGCATTGTT----AGATCCATTTACTtcatttcgaatatttggcgaggttatcctatttttgcccta
gi|13 : CAATCCGCCATTGGACCTCACTTGA----TAT-A--GAAAT---------ATACAGTACTTTCTG----------------------CATTGTGAGATCAATTTACTGA-TGCAATCCGCCACTGGACCTCACCT
gi|14 : tCTCATCTGA----TAT-A--GAAATA---------TATAGTAGTATCTG----------------------CATTTCTAGACTCAT--------------CCGCCATTGGACCTCACCTGA--TATAGAAAGATACA--AT-ACTT
gi|15 : ATGTAC-------AG--TA-CTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|16 : TGTAC-------AG--TA-CTT----TGTATCTGCATTTCGAGACCCA-TTACTGGTGCAATCCG
gi|17 : TGGGCCTCACCTGA--TATAGAAATATACA--GT-ACTTTTTGCATTG
gi|2 : TATATGTTCAAGTTTACACCTTGCCAAATATCTTTTGTAAAAAGTTGTTTTGTTGTTTATTATAAAATCCAAACTTGTCATCCATACAGTTGTCCAAGCAATAAGAATATTTTGGAGAAAAACATTTTTCAGTATTCGATTTATTTCATTACAGTTAATTTCACATTCGAACATAAGATTAAGCAGTTTTATATCATATAAAACACTAAAGGGATAATGTGAAAGTATACAATAAGCAGCTTTACTTACTTCATATTTCCTTCAATGTTGACTGCGAACTTTGCATAAATCATGAAAACATATATATTGCTGTATTTTTAATGAGTACTAA------TGAAATAAATAAAAGTTGAAACAATTGTATTTTTTATGTTATTTATGTCGTGCTTCAAAAATGATTTCCTCCTAATAGTTGTCATGGGACATTAAAACATGTCGGCTGCACATTGT--A-CA-CTGATATATAAATATAC-------AG--TG-CTT----T----CTGCATTGTAAGGTCCATTTACTGGTGCAATCTGCCAGTGGACCACACCAGA----TAT-------ATA---AA--TATACAGTGCTTTCTG----------------------CA
gi|3 : aTAC-------AG--TA-GTA----T----CTGCATTTCGAGACCCATTTACTCGTGCAATCTGCAATTA---CTCATCagtat
gi|4 : AAA-ATAC-------AG--TA-CTTAAGAT----CTGCATTTTGAGACCCAATTACTGGTGCAGTCCGCCATTGTACATCAgactgacagcttagtcatctcagatgcttgaggggatatctcaatatgccctaagaagtgtgattaaaaatgtaaaaaaaatcggaatatttggccacatcaccaacccttacgctccgacttctatgcctatggtgataaataggaatatgtcatttcgagactttttcttaacaaaagatattgcattgcattaacacaagaaggacttttaattccgtgcgctttattattaatccataaaacacaattatattatctccacataattaatattttatatttccaatcaccgatctcccccttaagaacctcagaaatttagcagaacgcatcaatcaacgacatgggcgtttca
gi|5 : TAGACACATTTACTGG-TGCAATCCGACATTGTACAACATCCGA--TGTAAAGACATGTAAGATAACATT---CATTAGT----CGACACATTTACTGTTACAATCCGACATTaatgacagcttagtcattgcgaatgttcgagggaatatctcaattttgccctaagaagtgcggttaaaaaaatgtcaaaaattcggaatattgggccacatcaccattactaacgcttcgactcctatgcctattgtgatgaatatgtcttttcgagactatttattaaaaaaaatatattgcattgcatgaacacaagtaaaggcttttttttttaattccgtgcgctttattattcatccataaaacacaattaaataatcaaattgtatttcttctgcacataattaatattttatatttcccatctccgagctccctataaagaacctcttagaa
gi|5 : gACATTGTACAACATCCGATGTAAAGACATGT-------AAGATAACAT----T----C---ATTAGTCGACACATTTACTGTTACAATCCGACATTGTACAACATCCGA----TGT-A--CAGACATGTAA--GATA----ACATTC-------------------------ATTAGTCGACACATTTACTGG-TGCAATCCGACATTGTACATCATCTGATGTACATAAATATATG--AT-AC---CTGCATAAGT----AGACCCATTTACTGGTGCAGTCTGGCATTgtacaacatccgatgtacagacatgtaagataacattcattagtcgacacatttactggtgcaatccgacattgtacatcatctgatgtacataaatatatgatacctgcataagtagacccatttactggtgcagtctggcattggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|5 : gtagacacatttactggtgcaatccgACATTGTACAACATCCGATGTACAGACATGT-------AAGATAACAT----T----C---ATTAGTCGACACATTTACTGGTGCAATCCGACATTGTACATCATCTGA----TGT-A--CA--TA---AA--TATATGATAC---CTG----------------------CATAAGTAGACCCATTTACTGG-TGCAGTCTGGCATTGGACATTACCTGA--TATAG--TGATGCA--G--A-----TGTATTGTTTTCGAGACCTATTTggacattacctgatatagtgatgcagatgtattgttttcgagacctatttcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : gtagacacatttactggtgcaatccgacattgtacaacatccgatgtaaagacatgtaagataacattcattagtcgacacatttactgttacaatccgCGCCATTGGACCACACCTGA----TAT-A--GAAAT---------ATACAGTACTTTCTG----------------------CAATGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCTCACCCGA--TATAGAAATATACA--GA-ACTTTCTGCATTGTcttattgaaaatatattgcaatgtcttaaatttcttttttaaatcca
gi|6 : AGATCCATTAACTGG-TGCAGTCCGCCATTGGACCTCACCTGA--atggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagatccattaactggtgcagtccgccattggacctcacctga
gi|7 : cgccattggaccacacctgatatagaaatatacagtactttctgcaatgttagatccatttactggtgcaatccgccattggacctcacccgatatagaaatatacagaactttctgcattgtatggaatcgaatcgaatggaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTATAC-------AG--TA-TTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TAT-A--GAAATATT-AA--T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACT
gi|8 : TATAC-------AG--TA-TTT----T----CTGCATTGTAAGATCCATTTACTGGTGCAATCTGCCACTGGACCTCATCTGA----TAT-A--GAAATATT-AA--T------TACTTTCTG----------------------CATTGTTAGATCCATTTACTGG-TGCAATCCGCCATTGGACCCCACCTGA--TATAGAAAAATGCA--GT-ACTTTCATCATTGTG----AGATTCATTAACTGGTGCAATCCGCCACTggacctcac
gi|9 : GGGAAAATATAAAATATCAGTTGCACAT----CA--G-CTGATATACAAACATAATATTATAAGATTA-CTT-----------ACCTTCCGAGTCCAATTTACTGGTGCAATCCATCATTGTACATCATCTGA----TAT-ATGGACATA---TAGCTGTATAGTATTACCTG----------------------CATTGCTAGACCTATTTACTAACTGCAATCCATCATTGTACATCATCTGA--TGTAggacctcac