lowQualScore : 11111 6666666666666666666 111 333333333333 1 2222222 11 1 11 1111111 22222
lowQualScore : 3 2 8 6 44444 9999999999999999999 1 888 000 1 3 888888888888 1 6 1 6666666 55 5 88 3 5 0 7 0 5 4 1 0 9 55 2 44 44 4444444 6666 22222 3 3 3 55
lowQualScore : . . . . ..... ................... . ... ... . . ............ . . . ....... .. . .. . . . . . . . . . . .. . .. .. ....... .... ..... . . . ..
lowQualScore : 5 2 8 0 22222 2222222222222222222 8 000 000 0 5 888888888888 0 7 7 2222222 00 0 11 4 6 1 0 4 0 3 4 7 0 00 6 66 66 2222222 5555 88888 6 6 6 00
consensus : AACNTGCCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATT-TTT---TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAAC-----ATACTTGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--T--AC-------AAG----GTTAGTGCCTTTCCCT-AC-A-A-G-TTTA--TTAGGTTCG
Reference ( gi|6 ) : AACTTATCAAGTACCATAAGTATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTCAATCATTTATT---AAAATACATAACAAATAAAC-----ATAGTTAATTGTTAT-TTTTCATTGATAGTCAGAAGCTTAGTTCTGCAAGCTCCATCCATTATTTGATCAAAATG-TTACTTGTTTATTCAACAAGATAAAT--AGAA--T--AC-------AAG----GTTAGTGCCTTTTCCG-AC-A-A-G-TTTA--TTAGGTTTG
gi|5 : AACATGTCAAGTACGATAAATATGTTATAAA--AACAAAC--AAATATTATGT---TCTTCTGTTTAATAATTTATTCAGAAAATACATTACAAATAAAT-----ATACTTGATTGTTAG-TTTT-ATTAATAATAAGAAGGTTAGTTCTGCTATCTCAATCCTCTGTTTGATCAATACG-TTACTTGCTTTTTC---------------GAA--T--AC-------AAG----GTTGGTAC
gi|3 : tgacgcattgccgaaactattatcggctcaatccatcttttAACTTACCAAGTATGATAAATATGTTGT----------------------------TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAAC-----A--G--ACTTGTTAT-ATTTTATTAATAATTAGATGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAATACA-TTACTTGCTCATTTAACa
gi|2 : AATTTGCCAAGTACCATAAATATGTTACGAA--AACAAAC--AA--------------------------ATATAT------AACAAAT---AAACAAAC-----CTGATT-ATTATTAT-TTTTTATT-------AGAAGTTTATTTCTGCTTGCTCAATCCTCTGTTTGATCAAAATG-TAACTTGCTTATTCAACAGGATAAAT--TGAA--TGAGC-------A------GTAAATA-CTTTCCTGTAC-A-A-G-GTTAATTTGGATCTGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcacctaataaaattgtagggaaaggtgctaaccttgtattatctat
gi|4 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttACGTGTAAAGCACGATAAATATGTTATGAAATAAAAAATTAAA-CATT-TTTCTGTTTTTTGTTTG--CATTTACT---AAAAcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|1 : acatatggccggaactacagttcaagacatcgttttctACAAAA--AA-TATT-TTT---AATTTTGTTTAATCATTTATT---ATAATCTACAACAAATAAACTGACTATA-TT-ACTGTTATATTTTTATT--T-----GAAGTTCAGTCCTATAGGATCGATATTTTATTTTA-CACAACGTTTTCCTACTTAT-------------T--AAAA--T--AC-------AAA----GTAAGTGCCTCTTCCT-TCAA-A-G-CGTA--TTATGTTCGcttttatttctaattcgataggataaatataatactagttttttttctttatctacaaagtttactacatccggcacgaaaacgcaacaattgctcgccattgttgcgttttaagcctcatgtacttaactttgtatggaaagacaatagcctaatatt
gi|15 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtATCATTTATT---AAAATAAGTAACAAATAAAC-----AGACTTGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTTTATTC-ATCAATACG-TTACTTGCTTATTtctcaaaaacggcaaagccattcttgcattgtctaagccttacctaactttggagggaaaggcactgaccttgtattttctct
gi|8 : ATCACTTATT---AAAGGACATAACAAATAAAT-----AGACTTGATT------TTTTTATTAATAATTTGAAGCTTAGTTCTGCTTGCTCAGTCC----TTTGATCAAATCG-TTTATTGCTTATTCAACAGGATAAAT--AAAGTTT--AT-------TAG----GTT
gi|19 : ATTAATAACTAGCAGCTTAGTTCTGCTAGCTCAATCCTCTGTT---------TG-TTACTTGCTAATtggcacaaaacacaatgcgttttctaaactttgcaggaaatggcactaacatagtat
gi|11 : TTAGAAGCTTAGTTCTGCTGACTCAATCCATTGTTTCATCAATATG-TTATGTGCTTATTCAACAGGATAAAA--AG-A--T--AC-------AAG----TTT------TATT-------A-G-G-TTTA--TTAGGT
gi|7 : tatatcaTTTAGTCAAAAGGATAAAC--AGAA--T--ATGAAAGTGAAGTGCTGTTACTACTTCTTTCG-CT-----G-TTTA--TTAGGgaggcttagaaaacgcaacaatggcgtg
gi|14 : tttgcagattatacctttataattatatGATAAAT--ATAA--T--AC-------GAA----AGTATTGCCTTTCGCT-AT-AGA-G-TTTA--CGAAGTTcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcagcctaatagaccttgtaaggaaagacactacgctaatattctcaattt
gi|3 : ATAGAT--A--A--T--AC-------AAG----GTTAGCACCTTTCCCT-AC-A-A-T-TTTA--TTAGGTccgaacgaaacatgcaacaatggctaagcaatatctcaccttttgcaatttctaagcctcacctaacttt
gi|7 : aacttaccaagtatgataaatatgttgttcttctgtttaatcatttattaaaatacataacaaataaacagacttgttatattttattaataattagatgcttagttctgctagctcaatcctctgtttgatcaatacattacttgctcatttaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcAAATTGAGAA--T--AT-------TAG----CGTAGTGTCTTTCCTT-AC-A-A-GGTCTA--TTAGGCT
gi|1 : tttgcagattatacctttataattatattttagtcaaaaggataaacagaatatgaaagtgaagtgctgttactacttctttcgctgtttattaggcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgc--AAAA--T--AC-------AAG----GTCAGTGCCTTTCCCT-CC-A-A-A----G--TTAGGT
gi|16 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtacaaaaaatatttttaattttgtttaatcatttattataatctacaacaaataaactgactatattactgttatatttttatttgaagttcagtcctataggatcgatattttattttacacaacgttttcctacttattaaaatacaaagtaagtgcctcttccttcaaagcgtattatgttcgtctcaaaaacggcaaagccattcttgcattgtctaagcctt--AAAA--T--ACT------AAG------TAGTTCATTTTCCT-AC-A-AAG-TTTA--TTAGGTTTGctct
gi|8 : aaA--T--AC-------TAT----GTTAGTGCCATTTCCT-GCAA-A-G-TTTA--gcaaaaaacgtaacagttgatcggtagaagctccccttgatgtgttttcttaacctcatataatca
gi|10 : atcacttattaaaggacataacaaataaatagacttgatttttttattaataatttgaagcttagttctgcttgctcagtcctttgatcaaatcgtttattgcttattcaacaggataaataaagtttattaggtttggcacaaaacacaatgcgttttcAG----GCTAGTGCCTCTCCCT-GCAA-A-G-TTTA--TT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GTAGGATGGAGATAGTTACTGTTTATCCCTACAAAGTTTATAAGGTTCTGCATAAAAACGCAACAGCCGTTTTGAGGAGTTTCACCATGTTGAATTTTTTAGTCTCGTCCAATACACTTTGCGGAGATAGACATTAACCTAGTAGTCT
Unaligned ( gi|12 ): ATTAGGCTGGCACAAAATTGCATCAATGGCTCAACAGAGACACGGCTTGTCGCATTTTCTTAGCTTCTCCCAAATGAATATTGCAGGAAAAGCAATAACCTAGGATTAAATGCTCTATTTATATC
Unaligned ( gi|13 ): CCTTTAACATACAAAGTGAGTTACAACTGTCGCAAAAATGCAACAAGAGCTCGGCAAAGCCTGCCATTGTTCCATTTTTAACCTCACGTAACAAACATAGTAGAAAATAGCACTAACTTATT
Unaligned ( gi|17 ): AGGTTTATAAGGTTTGACACAAAAATGCAACAAAGGCTCTGCAAAGTTTCACCATGTCCTATTTTCTCAT
Unaligned ( gi|18 ): GTTTAATTTCTTAACCTCATCTTAAACATTTTGTGGCGAAAAGCATTAACCCACTAGTCTCTATAT
Alignments
lowQualScore : 11 111 2222222 111 111 11111111111 1
lowQualScore : 1 3 11 000 6 2222222 000 8 000 3 5 0 1 0 2 6 2 4 0 44 0 33 66 33 2 2 11111111111 2 0 5 5 2
lowQualScore : . . .. ... . ....... ... . ... . . . . . . . . . . .. . .. .. .. . . ........... . . . . .
lowQualScore : 0 2 00 222 7 2222222 000 4 000 0 7 1 8 1 2 7 6 4 1 22 7 77 99 22 4 5 99999999999 7 7 3 3 7
consensus : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TAC-GAG--GTT-AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
Reference ( family-256 ) : AACNTGCCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATT-TTT---TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAACATACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TAC-AAG--GTT-AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
gi|1 : ACAAAA--AA-TATT-TTT---AATTTTGTTTAATCATTTATT---ATAATCTACAACAAATAAACTGACTATATTACTGTTATATTTTTATT--T-----GAAGTTCAGTCCTATAGGATCGATATTTTATTTTA-CACAACGTTTTCCTACTTAT-------------T--AAAA--TAC-AAA--GTA-AGT-GC-----------CTCTTCCTT-CAA-A-G-CGTATTATGTTCG
gi|1 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagt--AAAA--TAC-AAG--GTC-AGT-GC-----------CTTTCCCTC-C-A-A-A----GTTAGGTtctcaaaaacggcaaagccattcttgcattgtctaagccttacctaactttggagggaaaggcactgaccttgtattttctct
gi|10 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtacaaaaaatatttttaattttgtttaatcatttattataatctacaacaaataaactgactatattactgttatatttttatttgaagttcagtcctataggatcgatattttattttacacaacgttttcctacttattaaaatacaaagtaagtgcctcttccttcaaagcgtattatgttcgtctcaaaaacggcaaagccattcttgcattgtctaagccttTCAGTAGGATAAAT--AGAA--CA--------TT--GTAAC-----------CTTTCCCTA-T-ACA-G-TTctct
gi|10 : AG--GCT-AGT-GC-----------CTCTCCCTG-CAA-A-G-TTTATTaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaaataaactttgcagggagaggcactagcctatgaatctc
gi|11 : tcagtaggataaatagaacattgtaacctttccctatacagttaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaATCATTAGAAGCTTAGTTCTGCTGACTCAATCCATTGTTTCATCAATATG-TTATGTGCTTATTCAACAGGATAAAA--AG-A--TAC-AAG------------------------TTT---TATT-A-G-G-TTTATTAGGTatgaatctc
gi|14 : tatGATAAAT--ATAA--TAC-GAA--AGT-ATT-GC-----------CTTTCGCTA-T-AGA-G-TTTACGAAGTTCgaggcttagaaaacgcaacaatggcgtg
gi|15 : ATCATTTATT---AAAATAAGTAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTTTATTC-ATCAATACG-TTACTTGCTTATTcgaacgaaacatgcaacaatggctaagcaatatctcaccttttgcaatttctaagcctcacctaacttt
gi|16 : --AAAA--TACTAAG----T-AGT-TC-----------ATTTTCCTA-C-A-AAG-TTTATTAGGTTTG
gi|19 : aaATTAATAACTAGCAGCTTAGTTCTGCTAGCTCAATCCTCTGTTT---------G-TTACTTGCTAATgcaaaaaacgtaacagttgatcggtagaagctccccttgatgtgttttcttaacctcatataatca
gi|2 : AATTTGCCAAGTACCATAAATATGTTACGAA--AACAAAC--AA-
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttAAATATATAACAAATAAACAAACC---TGATTATTAT-TATTTTTTA----TTAGAAGTTTATTTCTGCTTGCTCAATCCTCTGTTTGATCAAAATG-TAACTTGCTTATTCAACAGGATAAAT--TGAA--T---GAGCAGTA-AAT-AC-----------TTTCCTGTA-C-A-A-G-GTTAatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacAA--TAT-TAG--GTA-TGT-GC-----------CTTTCCCTA-CAA-A-G-TGAATAAGGTatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|3 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacaaatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcAACTTACCAAGTATGATAAATATGTTGT----------------------------TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TG----TTAT-ATTTTATTAATAATTAGATGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAATACA-TTACTTGCTCATTTAAC
gi|3 : ATAGAT--A--A--TAC-AAG--GTT-AGC-AC-----------CTTTCCCTA-C-A-A-T-TTTATTAGGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcacctaataaaattgtagggaaaggtgctaaccttgtattatctat
gi|4 : aacttaccaagtatgataaatatgttgttcttctgtttaatcatttattaaaatacataacaaataaacagacttgttatattttattaataattagatgcttagttctgctagctcaatcctctgtttgatcaatacattacttgctcatttaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcACGTGTAAAGCACGATAAATATGTTATGAAATAAAAAATTAAA-CATT-TTTCTGTTTTTTGTTTG--CATTTACT---AAAA
gi|5 : acatatggccggaactacagttcaagacatcgttttctAACATGTCAAGTACGATAAATATGTTATAAA--AACAAAC--AAATATTATGT---TCTTCTGTTTAATAATTTATTCAGAAAATACATTACAAATAAATATACT---TGATTGTTAG-TTTT-ATTAATAATAAGAAGGTTAGTTCTGCTATCTCAATCCTCTGTTTGATCAATACG-TTACTTGCTTTTTC---------------GAA--TAC-AAG--GTT-GGT-AC-----------cttttatttctaattcgataggataaatataatactagttttttttctttatctacaaagtttactacatccggcacgaaaacgcaacaattgctcgccattgttgcgttttaagcctcatgtacttaactttgtatggaaagacaatagcctaatatt
gi|6 : tgacgcattgccgaaactattatcggctcaatccatcttttAACTTATCAAGTACCATAAGTATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTCAATCATTTATT---AAAATACATAACAAATAAACATAGT---TAATTGTTAT-TTTTCATTGATAGTCAGAAGCTTAGTTCTGCAAGCTCCATCCATTATTTGATCAAAATG-TTACTTGTTTATTCAACAAGATAAAT--AGAA--TAC-AAG--GTT-AGT-GC-----------CTTTTCCGA-C-A-A-G-TTTATTAGGTTTGa
gi|7 : TTAGTCAAAAGGATAAAC--AGAA--TATGAAA--GTGAAGT-GCTGTTACTACTTCTTTCGCT--------G-TTTATTAGG
gi|7 : tttgcagattatacctttataattatattAAATTGAGAA--TAT-TAG--CGT-AGT-GT-----------CTTTCCTTA-C-A-A-GGTCTATTAGGCTcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcagcctaatagaccttgtaaggaaagacactacgctaatattctcaattt
gi|8 : tttgcagattatacctttataattatattttagtcaaaaggataaacagaatatgaaagtgaagtgctgttactacttctttcgctgtttattaggcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcATCACTTATT---AAAGGACATAACAAATAAATAGACT---TGATT------TTTTTATTAATAATTTGAAGCTTAGTTCTGCTTGCTCAGTCC----TTTGATCAAATCG-TTTATTGCTTATTCAACAGGATAAAT--AAAGTTTAT-TAG--GTT-
gi|8 : A--TAC-TAT--GTT-AGT-GC-----------CATTTCCTG-CAA-A-G-TTTAtggcacaaaacacaatgcgttttctaaactttgcaggaaatggcactaacatagtat
gi|9 : atcacttattaaaggacataacaaataaatagacttgatttttttattaataatttgaagcttagttctgcttgctcagtcctttgatcaaatcgtttattgcttattcaacaggataaataaagtttattaggtttggcacaaaacacaatgcgttttc--GTT-ACT-GT-----------TTATCCCTA-C-A-AAG-TTTATAAGGTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTAGGCTGGCACAAAATTGCATCAATGGCTCAACAGAGACACGGCTTGTCGCATTTTCTTAGCTTCTCCCAAATGAATATTGCAGGAAAAGCAATAACCTAGGATTAAATGCTCTATTTATATC
Unaligned ( gi|13 ): CCTTTAACATACAAAGTGAGTTACAACTGTCGCAAAAATGCAACAAGAGCTCGGCAAAGCCTGCCATTGTTCCATTTTTAACCTCACGTAACAAACATAGTAGAAAATAGCACTAACTTATT
Unaligned ( gi|17 ): AGGTTTATAAGGTTTGACACAAAAATGCAACAAAGGCTCTGCAAAGTTTCACCATGTCCTATTTTCTCAT
Unaligned ( gi|18 ): GTTTAATTTCTTAACCTCATCTTAAACATTTTGTGGCGAAAAGCATTAACCCACTAGTCTCTATAT
Alignments
lowQualScore : 11 111 2222222 111 111 11111111111 1
lowQualScore : 1 3 11 000 6 1111111 000 000 3 5 0 1 0 2 6 2 4 0 33 33 77 777 444 2 11111111111 2 0 5 5 2
lowQualScore : . . .. ... . ....... ... ... . . . . . . . . . . .. .. .. ... ... . ........... . . . . .
lowQualScore : 0 2 00 222 7 6666666 000 000 0 7 1 8 1 2 7 6 4 1 99 44 22 444 000 5 99999999999 7 7 3 3 7
consensus : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
Reference ( family-256 ) : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
gi|1 : ACAAAA--AA-TATT-TTT---AATTTTGTTTAATCATTTATT---ATAATCTACAACAAATAAACTGACTATATTACTGTTATATTTTTATT--T-----GAAGTTCAGTCCTATAGGATCGATATTTTATTTTA-CACAACGTTTTCCTACTTAT-------------T--AAAA--TACAAA---GTA--AGT-GC-----------CTCTTCCTT-CAA-A-G-CGTATTATGTTCG
gi|1 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagt--AAAA--TACAAG---GTC--AGT-GC-----------CTTTCCCTC-C-A-A-A----GTTAGGTtctcaaaaacggcaaagccattcttgcattgtctaagccttacctaactttggagggaaaggcactgaccttgtattttctct
gi|10 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtacaaaaaatatttttaattttgtttaatcatttattataatctacaacaaataaactgactatattactgttatatttttatttgaagttcagtcctataggatcgatattttattttacacaacgttttcctacttattaaaatacaaagtaagtgcctcttccttcaaagcgtattatgttcgtctcaaaaacggcaaagccattcttgcattgtctaagccttTCAGTAGGATAAAT--AGAA--CA--------TT---GTAAC-----------CTTTCCCTA-T-ACA-G-TTctct
gi|10 : AG---GCT--AGT-GC-----------CTCTCCCTG-CAA-A-G-TTTATTaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaaataaactttgcagggagaggcactagcctatgaatctc
gi|11 : tcagtaggataaatagaacattgtaacctttccctatacagttaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaATCATTAGAAGCTTAGTTCTGCTGACTCAATCCATTGTTTCATCAATATG-TTATGTGCTTATTCAACAGGATAAAA--AG-A--TACAAG--------------------------TTT---TATT-A-G-G-TTTATTAGGTatgaatctc
gi|14 : tatGATAAAT--ATAA--TACGAA---AGT--ATT-GC-----------CTTTCGCTA-T-AGA-G-TTTACGAAGTTCgaggcttagaaaacgcaacaatggcgtg
gi|15 : ATCATTTATT---AAAATAAGTAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTTTATTC-ATCAATACG-TTACTTGCTTATTcgaacgaaacatgcaacaatggctaagcaatatctcaccttttgcaatttctaagcctcacctaacttt
gi|16 : --AAAA--TACTAA---GT---AGT-TC-----------ATTTTCCTA-C-A-AAG-TTTATTAGGTTTG
gi|19 : aaATTAATAACTAGCAGCTTAGTTCTGCTAGCTCAATCCTCTGTTT---------G-TTACTTGCTAATgcaaaaaacgtaacagttgatcggtagaagctccccttgatgtgttttcttaacctcatataatca
gi|2 : AATTTGCCAAGTACCATAAATATGTTACGAA--AACAAAC--AA-
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttAAATATATAACAAATAAACAAACC---TGATTATTAT-TATTTTTTA----TTAGAAGTTTATTTCTGCTTGCTCAATCCTCTGTTTGATCAAAATG-TAACTTGCTTATTCAACAGGATAAAT--TGAA--T--GAGCA-GTA--AAT-AC-----------TTTCCTGTA-C-A-A-G-GTTAatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacAA--TATTAG---GTA--TGT-GC-----------CTTTCCCTA-CAA-A-G-TGAATAAGGTatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|3 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacaaatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcAACTTACCAAGTATGATAAATATGTTGT----------------------------TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TG----TTAT-ATTTTATTAATAATTAGATGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAATACA-TTACTTGCTCATTTAAC
gi|3 : ATAGAT--A--A--TACAAG---GTT--AGC-AC-----------CTTTCCCTA-C-A-A-T-TTTATTAGGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcacctaataaaattgtagggaaaggtgctaaccttgtattatctat
gi|4 : aacttaccaagtatgataaatatgttgttcttctgtttaatcatttattaaaatacataacaaataaacagacttgttatattttattaataattagatgcttagttctgctagctcaatcctctgtttgatcaatacattacttgctcatttaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcACGTGTAAAGCACGATAAATATGTTATGAAATAAAAAATTAAA-CATT-TTTCTGTTTTTTGTTTG--CATTTACT---AAAA
gi|5 : acatatggccggaactacagttcaagacatcgttttctAACATGTCAAGTACGATAAATATGTTATAAA--AACAAAC--AAATATTATGT---TCTTCTGTTTAATAATTTATTCAGAAAATACATTACAAATAAATATACT---TGATTGTTAG-TTTT-ATTAATAATAAGAAGGTTAGTTCTGCTATCTCAATCCTCTGTTTGATCAATACG-TTACTTGCTTTTTC---------------GAA--TACAAG---GTT--GGT-AC-----------cttttatttctaattcgataggataaatataatactagttttttttctttatctacaaagtttactacatccggcacgaaaacgcaacaattgctcgccattgttgcgttttaagcctcatgtacttaactttgtatggaaagacaatagcctaatatt
gi|6 : tgacgcattgccgaaactattatcggctcaatccatcttttAACTTATCAAGTACCATAAGTATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTCAATCATTTATT---AAAATACATAACAAATAAACATAGT---TAATTGTTAT-TTTTCATTGATAGTCAGAAGCTTAGTTCTGCAAGCTCCATCCATTATTTGATCAAAATG-TTACTTGTTTATTCAACAAGATAAAT--AGAA--TACAAG---GTT--AGT-GC-----------CTTTTCCGA-C-A-A-G-TTTATTAGGTTTGa
gi|7 : TTAGTCAAAAGGATAAAC--AGAA--TATGAA---AGTGAAGT-GCTGTTACTACTTCTTTCGCT--------G-TTTATTAGG
gi|7 : tttgcagattatacctttataattatattAAATTGAGAA--TATTAG---CGT--AGT-GT-----------CTTTCCTTA-C-A-A-GGTCTATTAGGCTcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcagcctaatagaccttgtaaggaaagacactacgctaatattctcaattt
gi|8 : tttgcagattatacctttataattatattttagtcaaaaggataaacagaatatgaaagtgaagtgctgttactacttctttcgctgtttattaggcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcATCACTTATT---AAAGGACATAACAAATAAATAGACT---TGATT------TTTTTATTAATAATTTGAAGCTTAGTTCTGCTTGCTCAGTCC----TTTGATCAAATCG-TTTATTGCTTATTCAACAGGATAAAT--AAAGTTTATTAG---GTT--
gi|8 : A--TACTAT---GTT--AGT-GC-----------CATTTCCTG-CAA-A-G-TTTAtggcacaaaacacaatgcgttttctaaactttgcaggaaatggcactaacatagtat
gi|9 : atcacttattaaaggacataacaaataaatagacttgatttttttattaataatttgaagcttagttctgcttgctcagtcctttgatcaaatcgtttattgcttattcaacaggataaataaagtttattaggtttggcacaaaacacaatgcgttttcT--AGGA--TG-GAGATAGTT--ACT-GT-----------TTATCCCTA-C-A-AAG-TTTATAAGGTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTAGGCTGGCACAAAATTGCATCAATGGCTCAACAGAGACACGGCTTGTCGCATTTTCTTAGCTTCTCCCAAATGAATATTGCAGGAAAAGCAATAACCTAGGATTAAATGCTCTATTTATATC
Unaligned ( gi|13 ): CCTTTAACATACAAAGTGAGTTACAACTGTCGCAAAAATGCAACAAGAGCTCGGCAAAGCCTGCCATTGTTCCATTTTTAACCTCACGTAACAAACATAGTAGAAAATAGCACTAACTTATT
Unaligned ( gi|17 ): AGGTTTATAAGGTTTGACACAAAAATGCAACAAAGGCTCTGCAAAGTTTCACCATGTCCTATTTTCTCAT
Unaligned ( gi|18 ): GTTTAATTTCTTAACCTCATCTTAAACATTTTGTGGCGAAAAGCATTAACCCACTAGTCTCTATAT
Alignments
lowQualScore : 11 111 2222222 111 111 11111111111 1
lowQualScore : 1 3 11 000 6 1111111 000 000 3 5 0 1 0 2 6 2 4 0 33 33 77 777 444 2 11111111111 2 0 5 5 2
lowQualScore : . . .. ... . ....... ... ... . . . . . . . . . . .. .. .. ... ... . ........... . . . . .
lowQualScore : 0 2 00 222 7 6666666 000 000 0 7 1 8 1 2 7 6 4 1 99 44 22 444 000 5 99999999999 7 7 3 3 7
consensus : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
Reference ( family-256 ) : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
gi|1 : ACAAAA--AA-TATT-TTT---AATTTTGTTTAATCATTTATT---ATAATCTACAACAAATAAACTGACTATATTACTGTTATATTTTTATT--T-----GAAGTTCAGTCCTATAGGATCGATATTTTATTTTA-CACAACGTTTTCCTACTTAT-------------T--AAAA--TACAAA---GTA--AGT-GC-----------CTCTTCCTT-CAA-A-G-CGTATTATGTTCG
gi|1 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagt--AAAA--TACAAG---GTC--AGT-GC-----------CTTTCCCTC-C-A-A-A----GTTAGGTtctcaaaaacggcaaagccattcttgcattgtctaagccttacctaactttggagggaaaggcactgaccttgtattttctct
gi|10 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtacaaaaaatatttttaattttgtttaatcatttattataatctacaacaaataaactgactatattactgttatatttttatttgaagttcagtcctataggatcgatattttattttacacaacgttttcctacttattaaaatacaaagtaagtgcctcttccttcaaagcgtattatgttcgtctcaaaaacggcaaagccattcttgcattgtctaagccttTCAGTAGGATAAAT--AGAA--CA--------TT---GTAAC-----------CTTTCCCTA-T-ACA-G-TTctct
gi|10 : AG---GCT--AGT-GC-----------CTCTCCCTG-CAA-A-G-TTTATTaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaaataaactttgcagggagaggcactagcctatgaatctc
gi|11 : tcagtaggataaatagaacattgtaacctttccctatacagttaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaATCATTAGAAGCTTAGTTCTGCTGACTCAATCCATTGTTTCATCAATATG-TTATGTGCTTATTCAACAGGATAAAA--AG-A--TACAAG--------------------------TTT---TATT-A-G-G-TTTATTAGGTatgaatctc
gi|14 : tatGATAAAT--ATAA--TACGAA---AGT--ATT-GC-----------CTTTCGCTA-T-AGA-G-TTTACGAAGTTCgaggcttagaaaacgcaacaatggcgtg
gi|15 : ATCATTTATT---AAAATAAGTAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTTTATTC-ATCAATACG-TTACTTGCTTATTcgaacgaaacatgcaacaatggctaagcaatatctcaccttttgcaatttctaagcctcacctaacttt
gi|16 : --AAAA--TACTAA---GT---AGT-TC-----------ATTTTCCTA-C-A-AAG-TTTATTAGGTTTG
gi|19 : aaATTAATAACTAGCAGCTTAGTTCTGCTAGCTCAATCCTCTGTTT---------G-TTACTTGCTAATgcaaaaaacgtaacagttgatcggtagaagctccccttgatgtgttttcttaacctcatataatca
gi|2 : AATTTGCCAAGTACCATAAATATGTTACGAA--AACAAAC--AA-
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttAAATATATAACAAATAAACAAACC---TGATTATTAT-TATTTTTTA----TTAGAAGTTTATTTCTGCTTGCTCAATCCTCTGTTTGATCAAAATG-TAACTTGCTTATTCAACAGGATAAAT--TGAA--T--GAGCA-GTA--AAT-AC-----------TTTCCTGTA-C-A-A-G-GTTAatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacAA--TATTAG---GTA--TGT-GC-----------CTTTCCCTA-CAA-A-G-TGAATAAGGTatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|3 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacaaatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcAACTTACCAAGTATGATAAATATGTTGT----------------------------TCTTCTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TG----TTAT-ATTTTATTAATAATTAGATGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAATACA-TTACTTGCTCATTTAAC
gi|3 : ATAGAT--A--A--TACAAG---GTT--AGC-AC-----------CTTTCCCTA-C-A-A-T-TTTATTAGGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcacctaataaaattgtagggaaaggtgctaaccttgtattatctat
gi|4 : aacttaccaagtatgataaatatgttgttcttctgtttaatcatttattaaaatacataacaaataaacagacttgttatattttattaataattagatgcttagttctgctagctcaatcctctgtttgatcaatacattacttgctcatttaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcACGTGTAAAGCACGATAAATATGTTATGAAATAAAAAATTAAA-CATT-TTTCTGTTTTTTGTTTG--CATTTACT---AAAA
gi|5 : acatatggccggaactacagttcaagacatcgttttctAACATGTCAAGTACGATAAATATGTTATAAA--AACAAAC--AAATATTATGT---TCTTCTGTTTAATAATTTATTCAGAAAATACATTACAAATAAATATACT---TGATTGTTAG-TTTT-ATTAATAATAAGAAGGTTAGTTCTGCTATCTCAATCCTCTGTTTGATCAATACG-TTACTTGCTTTTTC---------------GAA--TACAAG---GTT--GGT-AC-----------cttttatttctaattcgataggataaatataatactagttttttttctttatctacaaagtttactacatccggcacgaaaacgcaacaattgctcgccattgttgcgttttaagcctcatgtacttaactttgtatggaaagacaatagcctaatatt
gi|6 : tgacgcattgccgaaactattatcggctcaatccatcttttAACTTATCAAGTACCATAAGTATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTCAATCATTTATT---AAAATACATAACAAATAAACATAGT---TAATTGTTAT-TTTTCATTGATAGTCAGAAGCTTAGTTCTGCAAGCTCCATCCATTATTTGATCAAAATG-TTACTTGTTTATTCAACAAGATAAAT--AGAA--TACAAG---GTT--AGT-GC-----------CTTTTCCGA-C-A-A-G-TTTATTAGGTTTGa
gi|7 : TTAGTCAAAAGGATAAAC--AGAA--TATGAA---AGTGAAGT-GCTGTTACTACTTCTTTCGCT--------G-TTTATTAGG
gi|7 : tttgcagattatacctttataattatattAAATTGAGAA--TATTAG---CGT--AGT-GT-----------CTTTCCTTA-C-A-A-GGTCTATTAGGCTcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcagcctaatagaccttgtaaggaaagacactacgctaatattctcaattt
gi|8 : tttgcagattatacctttataattatattttagtcaaaaggataaacagaatatgaaagtgaagtgctgttactacttctttcgctgtttattaggcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcATCACTTATT---AAAGGACATAACAAATAAATAGACT---TGATT------TTTTTATTAATAATTTGAAGCTTAGTTCTGCTTGCTCAGTCC----TTTGATCAAATCG-TTTATTGCTTATTCAACAGGATAAAT--AAAGTTTATTAG---GTT--
gi|8 : A--TACTAT---GTT--AGT-GC-----------CATTTCCTG-CAA-A-G-TTTAtggcacaaaacacaatgcgttttctaaactttgcaggaaatggcactaacatagtat
gi|9 : atcacttattaaaggacataacaaataaatagacttgatttttttattaataatttgaagcttagttctgcttgctcagtcctttgatcaaatcgtttattgcttattcaacaggataaataaagtttattaggtttggcacaaaacacaatgcgttttcT--AGGA--TG-GAGATAGTT--ACT-GT-----------TTATCCCTA-C-A-AAG-TTTATAAGGTTC
blockSeqs : T G AT TTA A TTTCTG CAG . G . C A C T . TG TT CA ATA TGA A TGTTACTACTT T A C A G
blockSeqs : G A . C . ATGT . . A . A T G T . . . CA CA C . . . A G A .
blockSeqs : A G . C . ATTT . . G . A T G A . . . CG . T . . . A . . .
blockSeqs : T . . C . . . . G . A T G T . . . CT . T . . . . . . .
blockSeqs : . . . . . . A T G T . . . TT . T . . . . . . .
blockSeqs : . . . . A T G A . . . CA . A . . . . . . .
blockSeqs : A A . A . . . CA . A . . . . . . .
blockSeqs : . . . . . . . CA . T . . . . . . .
blockSeqs : . . TG . T . . . . . . .
blockSeqs : . . TT . T . . . . . . .
blockSeqs : . . TT . T . . . . . . .
blockSeqs : . . CT . T . . . . . . .
blockSeqs : . . G . T . . . . . . .
blockSeqs : . G . T . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : TC***** ***
originalCons : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTATTT---TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
finalCons : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTTC-----TCTTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTAGGCTGGCACAAAATTGCATCAATGGCTCAACAGAGACACGGCTTGTCGCATTTTCTTAGCTTCTCCCAAATGAATATTGCAGGAAAAGCAATAACCTAGGATTAAATGCTCTATTTATATC
Unaligned ( gi|13 ): CCTTTAACATACAAAGTGAGTTACAACTGTCGCAAAAATGCAACAAGAGCTCGGCAAAGCCTGCCATTGTTCCATTTTTAACCTCACGTAACAAACATAGTAGAAAATAGCACTAACTTATT
Unaligned ( gi|17 ): AGGTTTATAAGGTTTGACACAAAAATGCAACAAAGGCTCTGCAAAGTTTCACCATGTCCTATTTTCTCAT
Unaligned ( gi|18 ): GTTTAATTTCTTAACCTCATCTTAAACATTTTGTGGCGAAAAGCATTAACCCACTAGTCTCTATAT
Alignments
lowQualScore : 11 111 44444444444 111 111 11111111111 1
lowQualScore : 1 3 11 000 6 11111111111 000 000 3 5 0 1 0 2 6 2 4 0 33 33 77 777 444 2 11111111111 2 0 5 5 2
lowQualScore : . . .. ... . ........... ... ... . . . . . . . . . . .. .. .. ... ... . ........... . . . . .
lowQualScore : 0 2 00 222 7 66666666666 000 000 0 7 1 8 1 2 7 6 4 1 99 44 22 444 000 5 99999999999 7 7 3 3 7
consensus : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATTA-T-TTC----TTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
Reference ( family-256 ) : AACTTGTCAAGTACGATAAATATGTTATGAA--AACAAAC--AA-TATT--T-CTC----TTTTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAANACG-TTACTTGCTTATTCAACAGGATAAAT--AGAA--TACGAG---GTT--AGT-GC-----------CTTTCCCTA-C-A-A-G-TTTATTAGGTTCG
gi|1 : ACAAAA--AA-TATT--T-TTAA---TTTTGTTTAATCATTTATT---ATAATCTACAACAAATAAACTGACTATATTACTGTTATATTTTTATT--T-----GAAGTTCAGTCCTATAGGATCGATATTTTATTTTA-CACAACGTTTTCCTACTTAT-------------T--AAAA--TACAAA---GTA--AGT-GC-----------CTCTTCCTT-CAA-A-G-CGTATTATGTTCG
gi|1 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagt--AAAA--TACAAG---GTC--AGT-GC-----------CTTTCCCTC-C-A-A-A----GTTAGGTtctcaaaaacggcaaagccattcttgcattgtctaagccttacctaactttggagggaaaggcactgaccttgtattttctct
gi|10 : tgacatatgatcggaactattatcgactaagagtatggtatcaagacatttgaaacttctcaagtacaaaaaatatttttaattttgtttaatcatttattataatctacaacaaataaactgactatattactgttatatttttatttgaagttcagtcctataggatcgatattttattttacacaacgttttcctacttattaaaatacaaagtaagtgcctcttccttcaaagcgtattatgttcgtctcaaaaacggcaaagccattcttgcattgtctaagccttTCAGTAGGATAAAT--AGAA--CA--------TT---GTAAC-----------CTTTCCCTA-T-ACA-G-TTctct
gi|10 : AG---GCT--AGT-GC-----------CTCTCCCTG-CAA-A-G-TTTATTaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaaataaactttgcagggagaggcactagcctatgaatctc
gi|11 : tcagtaggataaatagaacattgtaacctttccctatacagttaacaatgtacggcatgaacacccacaatcttgttgcattttcttggcctcatcaATCATTAGAAGCTTAGTTCTGCTGACTCAATCCATTGTTTCATCAATATG-TTATGTGCTTATTCAACAGGATAAAA--AG-A--TACAAG--------------------------TTT---TATT-A-G-G-TTTATTAGGTatgaatctc
gi|14 : tatGATAAAT--ATAA--TACGAA---AGT--ATT-GC-----------CTTTCGCTA-T-AGA-G-TTTACGAAGTTCgaggcttagaaaacgcaacaatggcgtg
gi|15 : ATCATTTATT---AAAATAAGTAACAAATAAACAGACT---TGATTGTTAT-TTTTTATTAATAATTAGAAGCTTAGTTCTGCTAGCTCAATCCTTTATTC-ATCAATACG-TTACTTGCTTATTcgaacgaaacatgcaacaatggctaagcaatatctcaccttttgcaatttctaagcctcacctaacttt
gi|16 : --AAAA--TACTAA---GT---AGT-TC-----------ATTTTCCTA-C-A-AAG-TTTATTAGGTTTG
gi|19 : aaATTAATAACTAGCAGCTTAGTTCTGCTAGCTCAATCCTCTGTTT---------G-TTACTTGCTAATgcaaaaaacgtaacagttgatcggtagaagctccccttgatgtgttttcttaacctcatataatca
gi|2 : AATTTGCCAAGTACCATAAATATGTTACGAA--AACAAAC--AA-
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttAAATATATAACAAATAAACAAACC---TGATTATTAT-TATTTTTTA----TTAGAAGTTTATTTCTGCTTGCTCAATCCTCTGTTTGATCAAAATG-TAACTTGCTTATTCAACAGGATAAAT--TGAA--T--GAGCA-GTA--AAT-AC-----------TTTCCTGTA-C-A-A-G-GTTAatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|2 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacAA--TATTAG---GTA--TGT-GC-----------CTTTCCCTA-CAA-A-G-TGAATAAGGTatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcaccttattcactttgtagggaaaggcacatacctaatatt
gi|3 : tgactcattcctggaaccattatcgtcaaagattttgacatcaagacatttttttaatttgccaagtaccataaatatgttacgaaaacaaacaaatatataacaaataaacaaacctgattattattattttttattagaagtttatttctgcttgctcaatcctctgtttgatcaaaatgtaacttgcttattcaacaggataaattgaatgagcagtaaatactttcctgtacaaggttaatttggatctgcatgaaaacgcaacagtggcttgtgttttctaagcctcAACTTACCAAGTATGATAAATATGTTGT--------------------------TC----TTCTGTTTAATCATTTATT---AAAATACATAACAAATAAACAGACT---TG----TTAT-ATTTTATTAATAATTAGATGCTTAGTTCTGCTAGCTCAATCCTCTGTTTGATCAATACA-TTACTTGCTCATTTAAC
gi|3 : ATAGAT--A--A--TACAAG---GTT--AGC-AC-----------CTTTCCCTA-C-A-A-T-TTTATTAGGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcacctaataaaattgtagggaaaggtgctaaccttgtattatctat
gi|4 : aacttaccaagtatgataaatatgttgttcttctgtttaatcatttattaaaatacataacaaataaacagacttgttatattttattaataattagatgcttagttctgctagctcaatcctctgtttgatcaatacattacttgctcatttaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcaccattgttgtgttatctaagtttcACGTGTAAAGCACGATAAATATGTTATGAAATAAAAAATTAAA-CATT--T-TTCTGTTTTTTGTTTG--CATTTACT---AAAA
gi|5 : acatatggccggaactacagttcaagacatcgttttctAACATGTCAAGTACGATAAATATGTTATAAA--AACAAAC--AAATATTA-TGTTC----TTCTGTTTAATAATTTATTCAGAAAATACATTACAAATAAATATACT---TGATTGTTAG-TTTT-ATTAATAATAAGAAGGTTAGTTCTGCTATCTCAATCCTCTGTTTGATCAATACG-TTACTTGCTTTTTC---------------GAA--TACAAG---GTT--GGT-AC-----------cttttatttctaattcgataggataaatataatactagttttttttctttatctacaaagtttactacatccggcacgaaaacgcaacaattgctcgccattgttgcgttttaagcctcatgtacttaactttgtatggaaagacaatagcctaatatt
gi|6 : tgacgcattgccgaaactattatcggctcaatccatcttttAACTTATCAAGTACCATAAGTATGTTATGAA--AACAAAC--AA-TATTATT-TTC----TTTTGTTCAATCATTTATT---AAAATACATAACAAATAAACATAGT---TAATTGTTAT-TTTTCATTGATAGTCAGAAGCTTAGTTCTGCAAGCTCCATCCATTATTTGATCAAAATG-TTACTTGTTTATTCAACAAGATAAAT--AGAA--TACAAG---GTT--AGT-GC-----------CTTTTCCGA-C-A-A-G-TTTATTAGGTTTGa
gi|7 : TTAGTCAAAAGGATAAAC--AGAA--TATGAA---AGTGAAGT-GCTGTTACTACTTCTTTCGCT--------G-TTTATTAGG
gi|7 : tttgcagattatacctttataattatattAAATTGAGAA--TATTAG---CGT--AGT-GT-----------CTTTCCTTA-C-A-A-GGTCTATTAGGCTcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcagcctaatagaccttgtaaggaaagacactacgctaatattctcaattt
gi|8 : tttgcagattatacctttataattatattttagtcaaaaggataaacagaatatgaaagtgaagtgctgttactacttctttcgctgtttattaggcgcggcacgaaaatgcatcaattgattagcaaacatcgtcttgttgtttttccttagcgcATCACTTATT---AAAGGACATAACAAATAAATAGACT---TGATT------TTTTTATTAATAATTTGAAGCTTAGTTCTGCTTGCTCAGTCC----TTTGATCAAATCG-TTTATTGCTTATTCAACAGGATAAAT--AAAGTTTATTAG---GTT--
gi|8 : A--TACTAT---GTT--AGT-GC-----------CATTTCCTG-CAA-A-G-TTTAtggcacaaaacacaatgcgttttctaaactttgcaggaaatggcactaacatagtat
gi|9 : atcacttattaaaggacataacaaataaatagacttgatttttttattaataatttgaagcttagttctgcttgctcagtcctttgatcaaatcgtttattgcttattcaacaggataaataaagtttattaggtttggcacaaaacacaatgcgttttcT--AGGA--TG-GAGATAGTT--ACT-GT-----------TTATCCCTA-C-A-AAG-TTTATAAGGTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTAGGCTGGCACAAAATTGCATCAATGGCTCAACAGAGACACGGCTTGTCGCATTTTCTTAGCTTCTCCCAAATGAATATTGCAGGAAAAGCAATAACCTAGGATTAAATGCTCTATTTATATC
Unaligned ( gi|13 ): CCTTTAACATACAAAGTGAGTTACAACTGTCGCAAAAATGCAACAAGAGCTCGGCAAAGCCTGCCATTGTTCCATTTTTAACCTCACGTAACAAACATAGTAGAAAATAGCACTAACTTATT
Unaligned ( gi|17 ): AGGTTTATAAGGTTTGACACAAAAATGCAACAAAGGCTCTGCAAAGTTTCACCATGTCCTATTTTCTCAT
Unaligned ( gi|18 ): GTTTAATTTCTTAACCTCATCTTAAACATTTTGTGGCGAAAAGCATTAACCCACTAGTCTCTATAT