lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 333333 111111111 1 1 1111111111 1 1 77777777777777777777777777777777777777777 4444444444444444444444444 111111111111111111111 111111111 222222222 11 111 1 111 33333333333333333333333333333333333 2222 11 2 3333333 11 55555555555555555555555555555555555555555555555555 2
lowQualScore : 0 7777 33 4 444444 777777777 0 9999999 0 0 3 3 4444444444 44 1 1 3 0 3 5 1 1 22222222222222222222222222222222222222222 777 3 9 55 9 55 3 88 3 3 8888888888888888888888888 6 0 777777777777777777777 333333333 1 333333333 555 555 66 3 8 1 888 22 4 88888 3 111 8888 6 1 0 0 7 4 44444444444444444444444444444444444 88 4 666 1111 8 33 2 0000000 55 1 6 6 3 6 9999 4 00 8 0 11 1 22 2 2 333 2 00000000000000000000000000000000000000000000000000 0 4
lowQualScore : . .... .. . ...... ......... . ....... . . . . .......... .. . . . . . . . . ......................................... ... . . .. . .. . .. . . ......................... . . ..................... ......... . ......... ... ... .. . . . ... .. . ..... . ... .... . . . . . . ................................... .. . ... .... . .. . ....... .. . . . . . .... . .. . . .. . .. . . ... . .................................................. . .
lowQualScore : 8 1111 99 2 333333 666666666 8 3333333 5 1 3 3 6666666666 66 9 3 3 1 5 0 7 9 88888888888888888888888888888888888888888 000 4 8 55 1 00 6 66 6 6 0000000000000000000000000 2 5 666666666666666666666 333333333 6 777777777 444 444 55 1 8 8 777 22 1 33333 0 333 5555 0 1 1 2 2 1 22222222222222222222222222222222222 55 0 222 6666 8 66 1 7777777 88 0 2 7 5 7 2222 0 44 0 8 00 0 00 7 7 000 7 00000000000000000000000000000000000000000000000000 0 0
consensus : TCTTTATTTAACGATGGT----AACTCAAT--CAATTA---CAATAAC---TG--TTCTCCCTTGAG-------GCCATCAACAAAGCAAATCATGGTTA-TAA-CAAATACA----------T--TCAAATACTAAATAAACAT-ACAGTCATACAATTAATTAAAGTCATTGCATTTCCAAGATA---TT-----CA-T--G----------A----------T--T---ATGACAATTATATAGCATAGAT--ATTG--TA-T--GTCTTATAGAAA-TA-TTGAGAN----ANTTA----AC----C----ACTGTATCAGTTAN-ANTTACTTN--------A-GAGA---------GTTGCGTAATA---TNT--NCTT---T---TT--AA-TTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC-----ATATGAGAGCC-CCAG---AATAGTGAAGACTTTGTTTGTATTTGTTTAATCTATATTTAGGA-------------A-----ANACT-T---------TGCACAAG-CTCTT-A--TTTC--ATAAGATGATTTAGCCTCTTGAAAAAAAAA-G-TTTAGGATNATCNGGAGTAAGCTTGTTGACACATTTA-TAAACTTTTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCGTTTAAGCTCCCGAANNAATGGTTTAGATGGAGAATCATATGGCATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTNGCATATTATG
Reference ( gi|2 ) : TCTTTATTGAACGATGGT----AACTCAAT--CAGTTAT--CATTAAT---TG--GTCTACCTTGAG-------GCCATCAACAAAGCAAATCAGGGTTA-TAA-CAAATACA----------T--TTAAATACTAAATAAACAT-ACAGTTATACACTTAATCAAAGTCATTGCATTTCCAAGCTA---TC-----CA-T--G----------A----------T--T---ATGACAATTGTATATCATAGAT--AGTG--TA-T--GTCTTATAGAAA-TA-TTGAGAA----AAATA----AT----C----ACCGTATCAGTTAC-ACTTTCTTT--------A-GAGA---------GTTGCGTAATA---TAT--ACTT---T---TT--AA-TCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC-----ATAAGAGAGCT-TCAA---AATAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGA-------------A-----AAA-------------TGCACAAA-CTCTT-A--TTAT--ATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTTTAGGATCATCAGGAGTACGTTTGTTAACACATTTA-TAAACTTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCGAAG
gi|3 : TCTTTATTGAACGATGGT----AACTCAAG--CACATA---CAT-AAC---TG--TTCTACATTGAG-------GCCATCAACAAAGCAAATCATGGTTA-TAA-CAGATACA----------T--TTAAATACTAAATAAACAT-ACAGTCATACAATTGACCAAAGTCATTGCATTTCCAAGATA---TT-----CA-T--G----------A----------A--T---ATGACAATTGTATATCACGGAT--AGCG--TA-T--GTCTTATAGAAA-TA-TTGAGAA----TTTTA----AT----C----ACTTTATCAGTTAC-ACTTACTTA--------A-GAGA---------GTTACATAATG---TTT--ACTT---T---TT--AA-T----------T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC-----ATATGAAAGCC-TCAA---AATAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGA-------------A-----AAA-------------TGCATCAG-TTCTT-A--TTTT--ATCAGATGATTTAGCCTCTT-GAAAAAAAAAGATGTAGGATCATCAGGAGTACGTTTGTTGAGACATTTA-TAAACT-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|4 : taataaaaataattTCTTTATTTAACGATGGT----AACTCAAT--AAACTAC------AAT-------GACTCCCTTGAG-------CCTACCAACAAAGCAAAGCATAGTTA-TAA-CAAATACA----------T--TTAAATTCTAAATAAACAT-GCAATCATACAATTAATTAAAGTCATTGCATG---AA--TA---AA-----CAGT--G---------------------T--T---ATGACAATTATATAGCATAGGT--ATTG--TA-T--GTCTTATAGAAA-TA-ATGAGAT----ATTTATTCTAC----C----ACTGTATAAGTTACGAGTTATTTC--------A-GAGA---------GTTGCGTAATA---TTT---CTT---T---TTG-AA-TTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC-----ATATGAGTGCC-CCAG---AATAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGA-------------ATCACTATATCTCCATT-----TGCACAAG-CTCTT-A--ATTC--ATAAGATAATTTGGCCGTTTGAAAAAAA
gi|19 : TCTTTTTTTAACGATGGT----AACTTTAT--CAATTA---CATTAAC---TGTTGTCCA--TTGAG-------GCCATCAACAAAGCAAATCATGGTTA-TAG-CAAATACA----------T--TCAAATACTATATTAACAT-ACAATCATA----TAATTAAAGTCATTGCATTTCCATGTTA---
gi|10 : aataaatTCTTTATTTTACGATGAT----AACTTGAT--CAATTA---CAGCAAC---TG--TTCTCCCTAGAA-------GCCACAAATAGAGAATATCATTGTTA-TAA-CAAATACA----------T--TCAAATACTAAATAAACAT-ACAGATAT
gi|29 : attataataacaataatgataataaatTCTTTATTTAACGATGAT----AACTCAAT--CAACTA---AACTATG---TG--TTTTCCCTCGAG-------GCCATCAACGAtttatgttttatagaaatattgataactttaattaactaatgtatcagttagaattacttttaattaaaagagaaataagttatatttcttttttgaattctttgatattctttgctagttgtacacttcggagagtcccagagtagtgatttagcccaatagt
gi|27 : TCTTTATCTAACGATGGT----AACTCAAA--CTGTTCT--C
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCATTA---CAATAAC---TT--TTCTCCCTTGCA-------ACCATcct
gi|30 : atTCTTCATTTAACGATAGT----AACTCAAT--TA
gi|5 : taataataatgataataataataaatCTTTATTTAACAATGGT----AACTCAAT--CAATTA---CAATAAC---TG--TTCTCCCATGAGCAATGGGGCCATCAACAAAGCAAAGCATAGTTA-TAA-CAAATACA----------T--GCAAATACTAAACAAACAT-ACAGTCATACAATTTATTTAAGTCATTGCATTTCTATGACA---TT-----CA-T--G----------AATATACAATGT--T---ATGACAATTATATAGCATAGAT--ACTG--TA-T--GTCTTATAGAAA-TA-TTGAGAT----ATTTA----ATCTACC----ACTGTATCAGTTAG-AATTACTTA--------A-GACA---------GCTGCATAATA---T-T--TCTT---T---TTG-AA-TTATTTAATATT-CTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC-----ATATGAAAGCC-CAAG---AATAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGA-------------A-----CAACTATATCCACATTTGCACAAG-CTCTT-A--c
gi|6 : TTATTTAACGAGGGT----AACTCAAT--CAATAA---CAATAAC---TG--TTCTCCCTGTAG-------GCCATCAACAAAACAAATCATGCTTA-TAA-CAAATACA----------T--TAAAATACTAAATAAACAT-ACAATCATA----TATTCAAAGTCATTGTATTTCCAAGGTA---GA-----AA-T-------------A----------T--T---GAGATATTTA-ATCTCGT--------TG--TA-TCAGT----TAGAAT-TACTTAAAAG----AGAT-------------------GCATC-----C-TTTTCCTTT-----------------------TTTG---AAT-----------TC---T---TT--AA-T------ATA-T--TTTGCTTTTCATATACTTTTTGTTATAGAATTTC-----ATATGAGAGCTCTAAA---AATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTATCCCA-----ATT-------------TGCACAAGTCCTTT-A--TT-C--ATAAGATGATTTACCCTCTT
gi|12 : taataatgataaagtgcTTACTTGACGATGGT----AACTCATTTACAGTTA---CAATAACACAT---GTCTTTAATGAG-------GTTGTCAACAGA------CAGGGTCA-TGG-T---TATA----------T--TCAAATACT--AT---CAC-ATAGTTAg
gi|21 : TATTGAACGATGAC----AACTTAAT--CAAATA---CAATAAC---TT--TTCTCCCTTGAG-------GCCTTCCACAGAGCA--T--GGGT-A-TAA-CAAATACA----------T--TTAAATATTACATAAACAT-ACAACCATACAagtgtctaacagtgcacatgtgacaattaaacagcattacaaaaaaaatattgagattgtcatctaagcaccgtattgatgtatcagtccataaaattgtctcttcttgatttatttatta
gi|11 : ttataataataaattcacTCAAT--GAAT-ATGACAATAAT---TG--CTCTGACTTGAG-------ACCATAAACAGAGCAGGTCATCGTTAATAA-TAAATACAGTCATGTACAT--TCAAATACTATGTTAATATGACTGTCATACAATTAATTA--GTCATTACATTTCTAACATA---TT-----AA-C--GC---------A----------T--T---ATGgtaaa
gi|9 : ttaataataataaattatttttAAC--CAAGTA---CAATAAC---TG--TTCTCCCTTGAG-------GTCACCCAGAAAGCAAATCATGGTTA-GAAACAAATACA----------T--TCAAACAATAATTAAACAT-ACACTCGTACCGTTAACAAAAGCAAGTCCATTTCTAAGATATATTCAAGAACA-TACA----------A----------TAAT---ATGACAATCATACA-GATAGAT--ATTA--TA-T--ACCTGATAGGAA-AA-TTGAGAATTTTAAACT----TC----C----ACTCTATCAG-----AATTACTTT--------C-GAGA---------GTTGCGTAATATATTAT--ATTT---T---TG--AA-TTTTTAAATA-TGTTTTTCTTGTCGTACACTTGG----GTAG-----C-----ATA----TGCC-CCAG---AATAGTGAATACTTTGtttttcttagtaaccactgtatcagtaaaaaaatatttaagagagttatgttatacatgtatttctgtttaagttctttcgtattctgtacttgtcctgcacttgggga
gi|7 : AAC---TG--TTCTCCCTTGAG-------GCCATCAATAAAGCAAACCATAGTTA-TAA-CAAATACA----------T--TCAAATACCAAATAAACAT-ACAATCATACAATTATTCAAAGTC--TGCATTTCTAAGATA---TT-----CA-T--GGATATGCAATG----------T--T---ATGACAATTATATAGCATAGAT--ATTG--TATT--GTCTTATAGAAA-TA-TTGAGAT----ATTTA----TT----CTACAACTGTAACAAATAG-AGTTACTTA--------A-GAGA---------GTTGTGTAATA---T-T--TCTT---T---TTG-AA-TTCTTTAATATT-CTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC-----ATATGAGAGCC-CCAG---AATAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGA-------------A-----TCACTGTATCCCCATTTGCACAAG-CTCTT-A--
gi|25 : TGAG-------ACCATCAACAGATCAAGTCCAGGTCA-TAA-CAAATACA----------TACATAAATAT---ACAAACAT-A-AATCATACAattca
gi|8 : AATTAAAGTCATTGCATTTCTAAGATA---TT-----CA-T--G----------AATATACAATGT--T---ATGACAATTTTATAGCATAGAT--ATTG--TA-TT-GTCTTGTAGGAA-TA-TTGAGAT----ATTTA----AT----CTACCACTGTAATAGTTAG-AGTTACTTA--------A-GAAA---------GTTGCATATTA---TTT---CTT---T---TTG-AA-TTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC-----ATATGAGAGCC-CCAG---AATAGTAAAGGC----TTTGTATTTGTTTAATCTATATTTAGGA-------------ATCACTATATCCCCATT-----TGCACAAG-CTCTT-A--ATTC--ATAAGATGATTTAGCCGTTTGAAAAAAAGA---TGTAAGATAATCTGGAGTAAGCTTGTTGACACATTCA-TAAACTaccacacaaaaaatt
gi|16 : AGAGTCATTGCACTTCCATCATA---TT-----CT-T--G----------AATATACA---T--TGAAATGACAATAATATAGTAAAGATCAAATCATTA-T--GATTTATGGAAA-TA-TTGAGAA-------TA----A-------------GTTGC--TTAC--CTCTGTAT--------C-AAGA---------GTTGTGCAATA---TTT--CTTT---T---TT--AA-TTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC-----ATA
gi|1 : aAAGTCATTGCATTTCCAAGCTA---TC-----CA-T--G----------A----------A--T---ATGACAATTGTATATCATAGAT--AGCG--TA-T--GTCTTATAGAAA-TA-TTGAGAA----AAATA----AT----C----ACCGTATCAGTTAC-ACTTTCTTT--------A-GAGA---------GTTGCGTAATA---TAT--ACTT---T---TT--AA-TCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC-----ATAAGAGAGCC-TCAA---AATAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGA-------------A-----AAA-------------TGCACAAA-CTCTT-A--TTAT--ATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTTTAGGATCATCAGGAGTACGTTTGAAAACACATTTA-TAAACTTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGt
gi|10 : ACAGAT--ATTT--TA-T--GTTTTATAGAAA-TA-TTGATAACTTTAATTA----AC----T----AATGTATCAGTTAG-AATTACTTTTAATTAAAA-GAGA---------AATAAGTTATA---T-T--TCTT---T---TTTGAA-TTCTTTGATATT-CTTTGCTAGTTGTACACTTCGG-----AGAGTCCC-----AGAGTAGTGAT-TTAGCCCAATAGTaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|18 : attataataacaataatgataataaattctttattttacgatgataacttgatcaattacagcaactgttctccctagaagccacaaatagagaatatcattgttataacaaatacattcaaatactaaataaacat--TA-T--GTTTGATAAAAAGTA-TTGCAAA----TTCTA----AC----C----ACTGTATCAACAAG-AATA-------------A-AAGAACAACAAAAGTTGTGTAGTA---CA---GTTT---C---TG--AA-TTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC-----ACA
gi|11 : tacagtaacggcatttaaacagcataattatAGTA----AC----C----ACTGTATCAGTAAA-AAAATATTT--------AAGAGA---------GTTATGTTATA---CATGTATTTCTGT---TT--AAGTTCTTTCGTA-TTCTGTACTTGTCCTGCACTTGGGGttcga
gi|15 : ttaataataataaattattttttcaatgaatatgacaataattgctctgacttgagaccataaacagagcaggtcatcgttaataataaatacagtcatgtacattcaaatactatgttaatatgactgtcatacaattaattagtcattacatttctaacatattaacgcattatgtttttcttAT--ATTT---TGGCTT--CA-GCCCTCCATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGATATAAGAGACC---CAG---AATAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAA-------------A-----TAACTATT--------TACACAAG-TTCTT-AATTTATTCATAAAATAATTTAAACTCTT-AAAGATAA----TTTAGa
gi|20 : -------------TACACAAG-TTCTTCA--TT-T--ATAAGAGGGTTCACCTTCTTGGACAAAA----------GATAAACTGGAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTCCTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCTagtaagcttgaa
gi|17 : attAAG-CTCCT-A--ATTC--ATAAGATGGTTTAGTTTCTT--GGAATAATCGTCTCAGTA-------GAGCAAGTT-GTTGACACATTTAATAAAGTGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|23 : atttaggaacaactatatacccacttgcactttttttgtGGAGTAAGCTTCTCGATACATTTA-TAAATTTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|31 : caacctcgtaattcataagatgatttagactctaatatAATGGTTTAGATGGAGAATCATATGGCATATC
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Unaligned ( gi|26 ): GTCATAGTAATAAAGTCTTTATTTAACAACAGCAACACAATTAAAATAACTTTTCTCCCTTGAGTTCCCCAA
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 1111111111 6666666666666666666666 11111111111111 1111111 333333333 11111111 1111111111 1111111 222 000000000000000000000000000000000 111111111 1111 5555555555 55555555555555555555555555555555555555555555555555 2
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3333333333 44 2 3 1 0 7777 44 2 3 6666666666666666666666 555 0 66666666666666 0 33 555 2 99 33 2 5 7777777 11 333333333 00000000 77777 55 2 00 5555555555 0000000 555 1 33 77 0 000 1 0 555 555 3 55 3 2 1 55 333333333333333333333333333333333 333333333 6 1111 8 1 2222222222 1 1 66 2 5 99 0 2 6 99 1 22 00000000000000000000000000000000000000000000000000 3 1 0
lowQualScore : .... .. .. . . . ... ....... . . . .......... .. . . . . .... .. . . ...................... ... . .............. . .. ... . .. .. . . ....... .. ......... ........ ..... .. . .. .......... ....... ... . .. .. . ... . . ... ... . .. . . . .. ................................. ......... . .... . . .......... . . .. . . .. . . . .. . .. .................................................. . . .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 5555555555 22 5 1 2 8 1111 22 9 1 5555555555555555555555 000 4 88888888888888 1 99 000 9 66 99 9 7 1111111 44 444444444 44444444 11111 99 0 88 5555555555 0000000 444 0 88 00 1 111 1 7 444 444 1 00 6 5 4 55 888888888888888888888888888888888 333333333 7 5555 0 8 9999999999 0 0 99 2 7 88 8 0 7 22 7 00 00000000000000000000000000000000000000000000000000 3 0 7
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCAAG--ATATTCA-TG---A----------T-------T---ATGACAATTATAT--------------AGCATA--GAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--------TGTATCAGT---TAN-ANTTACTT--------NAGAG-------AGTTGCGTAATA---TNTCTTTTTG-AATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGA--AN--------AACTA---C--C-T----------TTGCAC---------AAGCTCTT-AN---TTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG-T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAACTT-TTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCAAG--ATATTCA-TG---A----------T-------T---ATGACAATTATAT--------------AGCATA--GAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ANTTA----A----CCAC--------TGTATCAGT---TAN-ANTTACTT--------NAGAG-------AGTTGCGTAATA---TNTNCTTTTT-AATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAAGACTTTGTTTGTATTTGTTTAATCTATATTTAGGA--AA--------NAC----------T----------TTGCAC---------AAGCTCTT-AT---TTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG-TTTAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAACTT-TTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCGTTTAAGCTCCCGAANNAATGGTTTAGATGGAGAATCATATGGCATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTNGCATATTATG
gi|1 : AAGTCATTGCATTTCCAAG--CTATCCA-TG---A----------A-------T---ATGACAATTGTAT--------------ATCATA--GAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--------CGTATCAGT---TAC-ACTTTCTT--------TAGAG-------AGTTGCGTAATA---TATACTTTTT-AATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTC-AAAATAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGA--AA--------AA-----------------------TGCAC---------AAACTCTT-AT---TATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTTTAGGATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAACTT-TNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|10 : attataataacaataatgataataaat--ATAT-CA-TT---G----------T-------T---ATAACAAATACATTCAAATACTAAATAAACATACAGAT---ATTTT-AT--GTTTTA--TAGAAA-TA-TTGATAACTTT--AATTA----A----CTAA--------TGTATCAGT---TAG-AATTACTTTTAATTAAAAGAG-------AAATAAGTTATA---TTTCTTTTTTGAATTCTTTGATATT-CTTTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC----AATAGTatattttatgttttatagaaatattgataactttaattaactaatgtatcagttagaattacttttaattaaaagagaaataagttatatttcttttttgaattctttgatattctttgctagttgtacacttcggagagtcccagagtagtgatttagcccaatagt
gi|11 : attataataacaataatgataataaattctttattttacgatgataacttgatcaattacagcaactgttctccctagaagccacaaatagagaTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-AATAAATACAGTCATGTACATTC--AAATACTATGTTAATATGACTGTCATACAATTAA----TT--AGTCATTACATTTCTAAC--ATATTAA-CGC--A----------T-------T---ATGTT--TTTCTT--------------AG--TA--ACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AGTTA-----------------------TGTTA-----TAC-ATGTATTT--------C--------------TGTTTAA------GTTCTTTCG-TATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT--------------------ATTC--AAATACTA--------------TCACATAGTTAAGTGTCTAA---CAGTGCA---------------CA-TG---------------------------TGACAATTAAAC--------------AGC-----------ATTAC-A--------A--AAAAAA-TA-TTGAGATTGTC--ATCTA----A----GCACCGTATTGATGTATCAGTCCATAA-AATTa
gi|15 : ATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCC-AGAATAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAA--AT--------AACTA--------T----------TTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTT-AAA--------------GATAATTTA--GAGTAAGCTTGgtctcttcttgatttatttatta
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCATC--ATATTCT-TG---AATATACA---T-------TGAAATGACAATAATAT--------------AGTAAA--GATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAGTTGCTT-A----CCTC--------TGTATCA----------------------------AG-------AGTTGTGCAATA---TTTCTTTTTT-AATTCTTTGATA-TTCATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGA--AC--------AAC----------TATATACCCACTTGCACTTTTTTTGTAAGCTCCT-AA---TTCATAAGATGGTTTAGTTTCTT-GGAATAA-------TCG--TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAGTG-T-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGGCATTTAAAC--------------AGCATA--ATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TTCTA----A----CCAC--------TGTATCAAC---AAG-AATAA-----------AAGAACAACAAAAGTTGTGTAGTA---CA-GTTTCTG-AATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AGCAAA----------TACATTC--AAATACTATATTAACAT-ACAATCATA----TAA----TTAAAGTCATTGCATTTCCAtcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-AACAAA----------TACATTT--AAATACTAAATAAACAT-ACAGTTATACACTTAA----TCAAAGTCATTGCATTTCCAAG--CTATCCA-TG---A----------T-------T---ATGACAATTGTAT--------------ATCATA--GAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--------CGTATCAGT---TAC-ACTTTCTT--------TAGAG-------AGTTGCGTAATA---TATACTTTTT-AATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTC-AAAATAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGA--AA--------AA-----------------------TGCAC---------AAACTCTT-AT---TATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTTTAGGATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAACTT-TTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ----------T----------TTACAC---------AAGTTCTTCAT---TT-ATAAGAGGGTTCACCTTCTT-GGACAAAA---------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : aTATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-AACAAA----------TACATTT--AAATATTACATAAACAT-ACAACCATACAGTAAA----t
gi|23 : ttataataataaattcacC---------AACCTCGT-AA---TTCATAAGATGATTTAGACTCT----------------------AATATG--GAGTAAGCTTCTCGATACATTTA-TAAATTT-GTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-AACAAA----------TACATACATAAATAT---ACAAACAT-A-AATCATACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAGA----------TACATTT--AAATACTAAATAAACAT-ACAGTCATACAATTGA----CCAAAGTCATTGCATTTCCAAG--ATATTCA-TG---A----------A-------T---ATGACAATTGTAT--------------ATCACG--GAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TTTTA----A----TCAC--------TTTATCAGT---TAC-ACTTACTT--------AAGAG-------AGTTACATAATG---TTTACTTTTT-AATTCTTT-----------GCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTC-AAAATAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGA--AA--------AA-----------------------TGCAT---------CAGTTCTT-AT---TTTATCAGATGATTTAGCCTCTT-GAAAAAAAAAGATGTAGGATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAACT--TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATTT--AAATTCTAAATAAACAT-GCAATCATACAATTAA----TTAAAGTCATTGCAT-----GA--ATAAACAGTG--------------T-------T---ATGACAATTATAT--------------AGCATA--GGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--ATTTATTCTA----CCAC--------TGTATAAGT---TACGAGTTATTT--------CAGAG-------AGTTGCGTAATA---TTTCTTTTTG-AATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCC-AGAATAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGA--AT--------CACTATATCTCCAT----------TTGCAC---------AAGCTCTT-AA---TTCATAAGATAATTTGGCCGTTT-GAAAAAAA
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATGC--AAATACTAAACAAACAT-ACAGTCATACAATTTA----TTTAAGTCATTGCATTTCTATG--ACATTCA-TG---AATATACAATGT-------T---ATGACAATTATAT--------------AGCATA--GAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTAATCTA----CCAC--------TGTATCAGT---TAG-AATTACTT--------AAGAC-------AGCTGCATAATA---TTTCTTTTTG-AATTATTTAATATT-CTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCA-AGAATAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGA--AC--------AACTATATCCACAT----------TTGCAC---------AAGCTCTT-A
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-AACAAA----------TACATTA--AAATACTAAATAAACAT-ACAATCATA----TAT----TCAAAGTCATTGTATTTCCAAG--GTAGAAA-T----A----------T-------T---GAGATATTTA--------------------------AT---CTCGT--T--GTATCAGTTAGAAT-TACTTAAAA----G--AG--A---------------------TGCATCCTT---TTC-CTTT--TT--------T---G-------AATTCTTTAATA---TA----TTTT-GCT--TTTCATA-TACTTT--TTGTTATAGAATT----TCATA-----------------TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTATCCCAA----------T----------TTGCAC---------AAGTCCTT-TA---TTCATAAGATGATTTACCCTCTT-G
gi|7 : taataatgataaagtgcAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-AACAAA----------TACATTC--AAATACCAAATAAACAT-ACAATCATACAATTAT----TCAAAGTC--TGCATTTCTAAG--ATATTCA-TG---GATATGCAATGT-------T---ATGACAATTATAT--------------AGCATA--GAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTATTCTA----CAAC--------TGTAACAAA---TAG-AGTTACTT--------AAGAG-------AGTTGTGTAATA---TTTCTTTTTG-AATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGA--AT--------CACTGTATCCCCAT----------TTGCAC---------AAGCTCTT-AA---TTCA
gi|8 : AA----TTAAAGTCATTGCATTTCTAAG--ATATTCA-TG---AATATACAATGT-------T---ATGACAATTTTAT--------------AGCATA--GAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--------TGTAATAGT---TAG-AGTTACTT--------AAGAA-------AGTTGCATATTA---TTTCTTTTTG-AATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTAAAGGC----TTTGTATTTGTTTAATCTATATTTAGGA--AT--------CACTATATCCCCAT----------TTGCAC---------AAGCTCTT-AA---TTCATAAGATGATTTAGCCGTTT-GAAAAAAAGA--TGTAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAACT
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAAACAAA----------TACATTC--AAACAATAATTAAACAT-ACACTCGTACCGTTAA----CAAAAGCAAGTCCATTTCTAAGATATATTCA-AGAACA----------TACAATAAT---ATGACAATCATAC--------------AG-ATA--GAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TTTTA----AACTTCCAC--------TCTATCAG--------AATTACTT--------TCGAG-------AGTTGCGTAATATATTATATTTTTG-AATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCC-AGAATAGTGAATACTTTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 1111111111 7777777777777777777777 1111111 333333333 11111 1 8888888888888888 111111111 55555555555 1
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3333333333 44 2 3 1 0 6666 0 2 44 3 3333333333333333333333 555 2 2 2 33 555 2 99 77 2 2 1111111 1 333333333 33 444 88 3 0 33 9999999 1 2 2 44444 0 2 5 7 1 555 555 3 55 3 1 1 1 7777777777777777 333333333 88888 8 1 22222222222 1 1 66 2 5 5 7 0 2 6 99 3
lowQualScore : .... .. .. . . . ... ....... . . . .......... .. . . . . .... . . .. . ...................... ... . . . .. ... . .. .. . . ....... . ......... .. ... .. . . .. ....... . . . ..... . . . . . ... ... . .. . . . . ................ ......... ..... . . ........... . . .. . . . . . . . .. .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 5555555555 22 5 1 2 8 5555 4 9 22 3 6666666666666666666666 444 9 9 9 99 000 9 66 99 9 9 0000000 6 444444444 99 333 66 0 6 44 3333333 7 5 0 11111 7 9 3 1 1 444 444 1 00 6 0 4 0 9999999999999999 333333333 11111 0 8 55555555555 0 0 99 2 7 7 2 8 0 7 22 3
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACT--ATAT--CC----TTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACT--A-----CC----TTTGCAC---------AAGCTCTTA----NTTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|1 : AAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTCAAAA-TAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGAAAAA------------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAAC-TTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAG--AT---ATT------TTA-------TGT-TTTATAGAA--ATATTGA-TA---A----------C-------T---TTAATTAACTAATGTAT-CAGTTAGA----ATTAC------TTTTAATTAAAA-------GAGA----A--A--TA---------------------AGT-TAT-ATTTCTTTT-------------TTG---AAT---T-C---T--TTGATATTCT-----------TTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC---AA-TAGTaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|11 : attataataacaataatgataataaatTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-AATAAATACAGTCATGTACATTC--AAATACTATGTTAATATGACTGTCATACAATTAA----TT--AGTCATTACATTTCTA-AC--ATATTAA-CGC--A----------T-------T---ATGT-T--TT-TCTTAG-----TAACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AGTTA-----------------TGTTA---TAC-ATGTATTTC--------------TGTTTAA---GT-T---CTTTCGT-ATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT--------------------ATTC--AAATACTA--------------TCACATAGTTAAGTGTCTAA---CAGTGCA----------------CA-TG---------------------------TGA-CAATT-AAACAG-C-----------ATTAC-A--------A--AAAAAA-TA-TTGAGATTGTC--ATCTA----A----GCAC--CGTATTGATGTA----TCAGTCCATAA-------AATTG-------TCT-C---TTCTTGA-TTTATTTATTA-a
gi|15 : ATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCCAGAA-TAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAAATAACT--A-----------TTTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTT-AAA---------------GATAATTTA--GAGTAAGCTTG
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCA-TC--ATATTCT-TG---AATATACA---T-------TGAAATGA-CAATA-ATATAG-TA--AAGATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAGTTGCTT-A----CCTC--TGTATCA------------------AG-------AGTTGTGCAATATTT-C---TTTTTTA-ATTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGAACAACT--ATATACCCA---CTTGCACTTTTTTTGTAAGCTCCTA----ATTCATAAGATGGTTTAGTTTCTT-GGAATAA--------TCG--TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAG-TGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGG-CATTT-AAACAG-CA--TAATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TTCTA----A----CCAC--TGTATCAAC-AAG-AATAA---AAGAACAACAAAAGTTGTGTAGTACAG-----TTTCTGA-ATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AGCAAA----------TACATTC--AAATACTATATTAACAT-ACAATCATA----TAA----TTAAAGTCATTGCATTTCCA-tcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-AACAAA----------TACATTT--AAATACTAAATAAACAT-ACAGTTATACACTTAA----TCAAAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------T-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTCAAAA-TAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGAAAAA------------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAAC-TTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ----TTTACAC---------AAGTTCTTC----ATTTATAAGAGGGTTCACCTTCTT-GGACAAAA----------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : aTATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-AACAAA----------TACATTT--AAATATTACATAAACAT-ACAACCATACAGTAAA----t
gi|23 : ttataataataaattcacC---------AACCTCGTA----ATTCATAAGATGATTTAGACTCT-----------------------AATATG--GAGTAAGCTTCTCGATACATTTA-TAAAT-TTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-AACAAA----------TACATACATAAATAT---ACAAACAT-A-AATCATACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAGA----------TACATTT--AAATACTAAATAAACAT-ACAGTCATACAATTGA----CCAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--CGGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TTTTA----A----TCAC--TTTATCAGT-TAC-ACTTACTTAAGAG-------AGTTACATAATGTTT-------------ACTTTTTAAT--T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTCAAAA-TAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGAAAAA------------------TGCAT---------CAGTTCTTA----TTTTATCAGATGATTTAGCCTCTT-GAAAAAAAAAGA-TGTAGGATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAAC-T-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATTT--AAATTCTAAATAAACAT-GCAATCATACAATTAA----TTAAAGTCATTGCAT------GA--ATAAACAGTG--------------T-------T---ATGA-CAATT-ATATAG-CA--TAGGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--ATTTATTCTA----CCAC--TGTATAAGT-TACGAGTTATTTCAGAG-------AGTTGCGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCCAGAA-TAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGAATCACT--ATATCTCCA---TTTGCAC---------AAGCTCTTA----ATTCATAAGATAATTTGGCCGTTT-GAAAAAAA
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATGC--AAATACTAAACAAACAT-ACAGTCATACAATTTA----TTTAAGTCATTGCATTTCTA-TG--ACATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTAATCTA----CCAC--TGTATCAGT-TAG-AATTACTTAAGAC-------AGCTGCATAATATTT-C---TTTTTGA-ATTATTTAATATT-CTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCAAGAA-TAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGAACAACT--ATAT--CCACA-TTTGCAC---------AAGCTCTTA----
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-AACAAA----------TACATTA--AAATACTAAATAAACAT-ACAATCATA----TAT----TCAAAGTCATTGTATTTCCA-AG--GTA
gi|6 : taataatgataaagtgcA-CAATC-ATATATTCA--AAGTC---ATTGT-AT--TTCCAAGGTAGAAA-TA-TTGAGA----T--ATTTA----A----TCTCGTTGTATCAGT-TAG-AATTACTTAAAAG-------AGATGCATCCT-TTT-CCT-TTTTTGA-ATTCTTTAATA-TATTTTGCTTTTCATATACTTTTTGTTATAGAATTTC---A---TA-TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTA-----TCCCAATTTGCAC---------AAGTCCTTT----ATTCATAAGATGATTTACCCTCTT-Ggaaatattgagatatttaatctcgttgtatcagttagaattacttaaaagagatgcatccttttccttttttgaattctttaatatattttgcttttcatatactttttgttatagaatttcatatgagagctctaaaaatagttgggacttttttgtatttgctatattaaggatcagctttatcccaatttgcacaagtcctttattcataagatgatttaccctcttg
gi|7 : taataatgataaagtgcttatttaacgagggtaactcaatcaataacaataactgttctccctgtaggccatcaacaaaacaaatcatgcttataacaaatacattaaaatactaaataaacatAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-AACAAA----------TACATTC--AAATACCAAATAAACAT-ACAATCATACAATTAT----TCAAAGTC--TGCATTTCTA-AG--ATATTCA-TG---GATATGCAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTATTCTA----CAAC--TGTAACAAA-TAG-AGTTACTTAAGAG-------AGTTGTGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGAATCACT--GTAT--CCCCA-TTTGCAC---------AAGCTCTTA----ATTCA
gi|8 : AA----TTAAAGTCATTGCATTTCTA-AG--ATATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-TTATAG-CA--TAGAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTAATAGT-TAG-AGTTACTTAAGAA-------AGTTGCATATTATTT-C---TTTTTGA-ATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTAAAGGCTTTGT----ATTTGTTTAATCTATATTTAGGAATCACT--ATATCCCCA---TTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCGTTT-GAAAAAAAGAT--G-TAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAAC-T
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAAACAAA----------TACATTC--AAACAATAATTAAACAT-ACACTCGTACCGTTAA----CAAAAGCAAGTCCATTTCTA-AGATATATTCA-AGAACA----------TACAATAAT---ATGA-CAATC-ATACAG--A--TAGAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TTTTA----AACTTCCAC--TCTATCAG------AATTACTTTCGAG-------AGTTGCGTAATATAT-TATATTTTTGA-ATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCCAGAA-TAGTGAATACTTTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 1111111111 7777777777777777777777 1111111 333333333 11111 1 5555555555555 111111111 55555555555 1
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3333333333 44 2 3 1 0 6666 0 2 44 3 3333333333333333333333 555 2 2 2 33 555 2 99 77 2 2 1111111 1 333333333 33 444 88 3 0 33 9999999 1 2 2 44444 0 2 5 7 1 555 555 3 55 3 1 1 1 2222222222222 333333333 7777 8 1 22222222222 1 1 66 2 5 5 7 0 2 6 99 3
lowQualScore : .... .. .. . . . ... ....... . . . .......... .. . . . . .... . . .. . ...................... ... . . . .. ... . .. .. . . ....... . ......... .. ... .. . . .. ....... . . . ..... . . . . . ... ... . .. . . . . ............. ......... .... . . ........... . . .. . . . . . . . .. .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 5555555555 22 5 1 2 8 5555 4 9 22 3 6666666666666666666666 444 9 9 9 99 000 9 66 99 9 9 0000000 6 444444444 99 333 66 0 6 44 3333333 7 5 0 11111 7 9 3 1 1 444 444 1 00 6 0 4 0 4444444444444 333333333 1111 0 8 55555555555 0 0 99 2 7 7 2 8 0 7 22 3
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATAT--CCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATAT--CC---TTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|1 : AAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTCAAAA-TAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGAAAAA---------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAAC-TTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAG--AT---ATT------TTA-------TGT-TTTATAGAA--ATATTGA-TA---A----------C-------T---TTAATTAACTAATGTAT-CAGTTAGA----ATTAC------TTTTAATTAAAA-------GAGA----A--A--TA---------------------AGT-TAT-ATTTCTTTT-------------TTG---AAT---T-C---T--TTGATATTCT-----------TTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC---AA-TAGTaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|11 : attataataacaataatgataataaatTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-AATAAATACAGTCATGTACATTC--AAATACTATGTTAATATGACTGTCATACAATTAA----TT--AGTCATTACATTTCTA-AC--ATATTAA-CGC--A----------T-------T---ATGT-T--TT-TCTTAG-----TAACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AGTTA-----------------TGTTA---TAC-ATGTATTTC--------------TGTTTAA---GT-T---CTTTCGT-ATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT--------------------ATTC--AAATACTA--------------TCACATAGTTAAGTGTCTAA---CAGTGCA----------------CA-TG---------------------------TGA-CAATT-AAACAG-C-----------ATTAC-A--------A--AAAAAA-TA-TTGAGATTGTC--ATCTA----A----GCAC--CGTATTGATGTA----TCAGTCCATAA-------AATTG-------TCT-C---TTCTTGA-TTTATTTATTA-a
gi|15 : ATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCCAGAA-TAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAAATAACTA----------TTTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTT-AAA---------------GATAATTTA--GAGTAAGCTTG
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCA-TC--ATATTCT-TG---AATATACA---T-------TGAAATGA-CAATA-ATATAG-TA--AAGATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAGTTGCTT-A----CCTC--TGTATCA------------------AG-------AGTTGTGCAATATTT-C---TTTTTTA-ATTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGAACAACTATATACCCA--CTTGCACTTTTTTTGTAAGCTCCTA----ATTCATAAGATGGTTTAGTTTCTT-GGAATAA--------TCG--TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAG-TGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGG-CATTT-AAACAG-CA--TAATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TTCTA----A----CCAC--TGTATCAAC-AAG-AATAA---AAGAACAACAAAAGTTGTGTAGTACAG-----TTTCTGA-ATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AGCAAA----------TACATTC--AAATACTATATTAACAT-ACAATCATA----TAA----TTAAAGTCATTGCATTTCCA-tcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-AACAAA----------TACATTT--AAATACTAAATAAACAT-ACAGTTATACACTTAA----TCAAAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------T-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTCAAAA-TAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGAAAAA---------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAAC-TTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ---TTTACAC---------AAGTTCTTC----ATTTATAAGAGGGTTCACCTTCTT-GGACAAAA----------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : aTATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-AACAAA----------TACATTT--AAATATTACATAAACAT-ACAACCATACAGTAAA----t
gi|23 : ttataataataaattcacC---------AACCTCGTA----ATTCATAAGATGATTTAGACTCT-----------------------AATATG--GAGTAAGCTTCTCGATACATTTA-TAAAT-TTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-AACAAA----------TACATACATAAATAT---ACAAACAT-A-AATCATACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAGA----------TACATTT--AAATACTAAATAAACAT-ACAGTCATACAATTGA----CCAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--CGGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TTTTA----A----TCAC--TTTATCAGT-TAC-ACTTACTTAAGAG-------AGTTACATAATGTTT-------------ACTTTTTAAT--T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTCAAAA-TAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGAAAAA---------------TGCAT---------CAGTTCTTA----TTTTATCAGATGATTTAGCCTCTT-GAAAAAAAAAGA-TGTAGGATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAAC-T-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATTT--AAATTCTAAATAAACAT-GCAATCATACAATTAA----TTAAAGTCATTGCAT------GA--ATAAACAGTG--------------T-------T---ATGA-CAATT-ATATAG-CA--TAGGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--ATTTATTCTA----CCAC--TGTATAAGT-TACGAGTTATTTCAGAG-------AGTTGCGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCCAGAA-TAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGAATCACTATAT--CTCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATAATTTGGCCGTTT-GAAAAAAA
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATGC--AAATACTAAACAAACAT-ACAGTCATACAATTTA----TTTAAGTCATTGCATTTCTA-TG--ACATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTAATCTA----CCAC--TGTATCAGT-TAG-AATTACTTAAGAC-------AGCTGCATAATATTT-C---TTTTTGA-ATTATTTAATATT-CTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCAAGAA-TAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGAACAACTATAT--CCACATTTGCAC---------AAGCTCTTA----
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-AACAAA----------TACATTA--AAATACTAAATAAACAT-ACAATCATA----TAT----TCAAAGTCATTGTATTTCCA-AG--GTA
gi|6 : taataatgataaagtgcA-CAATC-ATATATTCA--AAGTC---ATTGT-AT--TTCCAAGGTAGAAA-TA-TTGAGA----T--ATTTA----A----TCTCGTTGTATCAGT-TAG-AATTACTTAAAAG-------AGATGCATCCT-TTT-CCT-TTTTTGA-ATTCTTTAATA-TATTTTGCTTTTCATATACTTTTTGTTATAGAATTTC---A---TA-TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTAT--CCCAATTTGCAC---------AAGTCCTTT----ATTCATAAGATGATTTACCCTCTT-Ggaaatattgagatatttaatctcgttgtatcagttagaattacttaaaagagatgcatccttttccttttttgaattctttaatatattttgcttttcatatactttttgttatagaatttcatatgagagctctaaaaatagttgggacttttttgtatttgctatattaaggatcagctttatcccaatttgcacaagtcctttattcataagatgatttaccctcttg
gi|7 : taataatgataaagtgcttatttaacgagggtaactcaatcaataacaataactgttctccctgtaggccatcaacaaaacaaatcatgcttataacaaatacattaaaatactaaataaacatAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-AACAAA----------TACATTC--AAATACCAAATAAACAT-ACAATCATACAATTAT----TCAAAGTC--TGCATTTCTA-AG--ATATTCA-TG---GATATGCAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTATTCTA----CAAC--TGTAACAAA-TAG-AGTTACTTAAGAG-------AGTTGTGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGAATCACTGTAT--CCCCATTTGCAC---------AAGCTCTTA----ATTCA
gi|8 : AA----TTAAAGTCATTGCATTTCTA-AG--ATATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-TTATAG-CA--TAGAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTAATAGT-TAG-AGTTACTTAAGAA-------AGTTGCATATTATTT-C---TTTTTGA-ATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTAAAGGCTTTGT----ATTTGTTTAATCTATATTTAGGAATCACTATAT--CCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCGTTT-GAAAAAAAGAT--G-TAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAAC-T
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAAACAAA----------TACATTC--AAACAATAATTAAACAT-ACACTCGTACCGTTAA----CAAAAGCAAGTCCATTTCTA-AGATATATTCA-AGAACA----------TACAATAAT---ATGA-CAATC-ATACAG--A--TAGAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TTTTA----AACTTCCAC--TCTATCAG------AATTACTTTCGAG-------AGTTGCGTAATATAT-TATATTTTTGA-ATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCCAGAA-TAGTGAATACTTTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 1111111111 7777777777777777777777 1111111 333333333 11111 2 2222222222 111111111 55555555555 1
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3333333333 44 2 3 1 0 6666 0 2 44 3 3333333333333333333333 555 2 2 2 33 555 2 99 77 2 2 1111111 1 333333333 33 444 88 3 0 33 9999999 1 2 2 44444 0 2 2 0 1 555 555 3 55 3 1 1 1 1111111111 333333333 7777 8 1 22222222222 1 1 66 2 5 5 7 0 2 6 99 3
lowQualScore : .... .. .. . . . ... ....... . . . .......... .. . . . . .... . . .. . ...................... ... . . . .. ... . .. .. . . ....... . ......... .. ... .. . . .. ....... . . . ..... . . . . . ... ... . .. . . . . .......... ......... .... . . ........... . . .. . . . . . . . .. .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 5555555555 22 5 1 2 8 5555 4 9 22 3 6666666666666666666666 444 9 9 9 99 000 9 66 99 9 9 0000000 6 444444444 99 333 66 0 6 44 3333333 7 5 0 11111 7 9 7 0 1 444 444 1 00 6 0 4 0 3333333333 333333333 1111 0 8 55555555555 0 0 99 2 7 7 2 8 0 7 22 3
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|1 : AAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTCAAAA-TAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAAC-TTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAG--AT---ATT------TTA-------TGT-TTTATAGAA--ATATTGA-TA---A----------C-------T---TTAATTAACTAATGTAT-CAGTTAGA----ATTAC------TTTTAATTAAAA-------GAGA----A--A--TA---------------------AGT-TAT-ATTTCTTTT-------------TTG---AAT---T-C---T--TTGATATTCT-----------TTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC---AA-TAGTaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|11 : attataataacaataatgataataaatTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-AATAAATACAGTCATGTACATTC--AAATACTATGTTAATATGACTGTCATACAATTAA----TT--AGTCATTACATTTCTA-AC--ATATTAA-CGC--A----------T-------T---ATGT-T--TT-TCTTAG-----TAACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AGTTA-----------------TGTTA---TAC-ATGTATTTC--------------TGTTTAA---GT-T---CTTTCGT-ATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT--------------------ATTC--AAATACTA--------------TCACATAGTTAAGTGTCTAA---CAGTGCA----------------CA-TG---------------------------TGA-CAATT-AAACAG-C-----------ATTAC-A--------A--AAAAAA-TA-TTGAGATTGTC--ATCTA----A----GCAC--CGTATTGATGTA----TCAGTCCATAA-------AATTG-------TCT-C---TTCTTGA-TTTATTTATTA-a
gi|15 : ATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCCAGAA-TAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAAATAACT--------ATTTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTT-AAA---------------GATAATTTA--GAGTAAGCTTG
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCA-TC--ATATTCT-TG---AATATACA---T-------TGAAATGA-CAATA-ATATAG-TA--AAGATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAGTTGCTT-A----CCTC--TGTATCA------------------AG-------AGTTGTGCAATATTT-C---TTTTTTA-ATTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGAACAACTATATACCCACTTGCACTTTTTTTGTAAGCTCCTA----ATTCATAAGATGGTTTAGTTTCTT-GGAATAA--------TCG--TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAG-TGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGG-CATTT-AAACAG-CA--TAATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TTCTA----A----CCAC--TGTATCAAC-AAG-AATAA---AAGAACAACAAAAGTTGTGTAGTACAG-----TTTCTGA-ATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AGCAAA----------TACATTC--AAATACTATATTAACAT-ACAATCATA----TAA----TTAAAGTCATTGCATTTCCA-tcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-AACAAA----------TACATTT--AAATACTAAATAAACAT-ACAGTTATACACTTAA----TCAAAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------T-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTCAAAA-TAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAAC-TTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ATTTACAC---------AAGTTCTTC----ATTTATAAGAGGGTTCACCTTCTT-GGACAAAA----------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : TATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-AACAAA----------TACATTT--AAATATTACATAAACAT-ACAACCATACAGTAAA----t
gi|23 : ttataataataaattcacC---------AACCTCGTA----ATTCATAAGATGATTTAGACTCT-----------------------AATATG--GAGTAAGCTTCTCGATACATTTA-TAAAT-TTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-AACAAA----------TACATACATAAATAT---ACAAACAT-A-AATCATACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAGA----------TACATTT--AAATACTAAATAAACAT-ACAGTCATACAATTGA----CCAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--CGGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TTTTA----A----TCAC--TTTATCAGT-TAC-ACTTACTTAAGAG-------AGTTACATAATGTTT-------------ACTTTTTAAT--T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTCAAAA-TAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGAAAAA-------------TGCAT---------CAGTTCTTA----TTTTATCAGATGATTTAGCCTCTT-GAAAAAAAAAGA-TGTAGGATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAAC-T-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATTT--AAATTCTAAATAAACAT-GCAATCATACAATTAA----TTAAAGTCATTGCAT------GA--ATAAACAGTG--------------T-------T---ATGA-CAATT-ATATAG-CA--TAGGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--ATTTATTCTA----CCAC--TGTATAAGT-TACGAGTTATTTCAGAG-------AGTTGCGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCCAGAA-TAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGAATCACTATATCTCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATAATTTGGCCGTTT-GAAAAAAA
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATGC--AAATACTAAACAAACAT-ACAGTCATACAATTTA----TTTAAGTCATTGCATTTCTA-TG--ACATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTATCAGT-TAG-AATTACTTAAGAC-------AGCTGCATAATATTT-C---TTTTTGA-ATTATTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCAAGAA-TAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGAACAACTATATCCACATTTGCAC---------AAGCTCTTA----
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-AACAAA----------TACATTA--AAATACTAAATAAACAT-ACAATCATA----TAT----TCAAAGTCATTGTATTTCCA-AG--GTA
gi|6 : taataatgataaagtgcA-CAATC-ATATATTCA--AAGTC---ATTGT-AT--TTCCAAGGTAGAAA-TA-TTGAGA----T--ATTTA----A----TCTCGTTGTATCAGT-TAG-AATTACTTAAAAG-------AGATGCATCCT-TTT-CCT-TTTTTGA-ATTCTTTAATA-TATTTTGCTTTTCATATACTTTTTGTTATAGAATTTC---A---TA-TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTATCCCAATTTGCAC---------AAGTCCTTT----ATTCATAAGATGATTTACCCTCTT-Ggaaatattgagatatttaatctcgttgtatcagttagaattacttaaaagagatgcatccttttccttttttgaattctttaatatattttgcttttcatatactttttgttatagaatttcatatgagagctctaaaaatagttgggacttttttgtatttgctatattaaggatcagctttatcccaatttgcacaagtcctttattcataagatgatttaccctcttg
gi|7 : taataatgataaagtgcttatttaacgagggtaactcaatcaataacaataactgttctccctgtaggccatcaacaaaacaaatcatgcttataacaaatacattaaaatactaaataaacatAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-AACAAA----------TACATTC--AAATACCAAATAAACAT-ACAATCATACAATTAT----TCAAAGTC--TGCATTTCTA-AG--ATATTCA-TG---GATATGCAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTATTCTA----CAAC--TGTAACAAA-TAG-AGTTACTTAAGAG-------AGTTGTGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGAATCACTGTATCCCCATTTGCAC---------AAGCTCTTA----ATTCA
gi|8 : AA----TTAAAGTCATTGCATTTCTA-AG--ATATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-TTATAG-CA--TAGAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTAATAGT-TAG-AGTTACTTAAGAA-------AGTTGCATATTATTT-C---TTTTTGA-ATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTAAAGGCTTTG----TATTTGTTTAATCTATATTTAGGAATCACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCGTTT-GAAAAAAAGAT--G-TAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAAC-T
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAAACAAA----------TACATTC--AAACAATAATTAAACAT-ACACTCGTACCGTTAA----CAAAAGCAAGTCCATTTCTA-AGATATATTCA-AGAACA----------TACAATAAT---ATGA-CAATC-ATACAG--A--TAGAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TTTTA----AACTTCCAC--TCTATCAG------AATTACTTTCGAG-------AGTTGCGTAATATAT-TATATTTTTGA-ATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCCAGAA-TAGTGAATACTTTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 1111111111 7777777777777777777777 1111111 333333333 11111 2 2222222222 111111111 55555555555 1
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3333333333 44 2 3 1 0 6666 0 2 44 3 3333333333333333333333 555 2 2 2 33 555 2 99 77 2 2 1111111 1 333333333 33 444 88 3 0 33 9999999 1 2 2 44444 0 2 2 0 1 555 555 3 55 3 1 1 1 1111111111 333333333 7777 8 1 22222222222 1 1 66 2 5 5 7 0 2 6 99 3
lowQualScore : .... .. .. . . . ... ....... . . . .......... .. . . . . .... . . .. . ...................... ... . . . .. ... . .. .. . . ....... . ......... .. ... .. . . .. ....... . . . ..... . . . . . ... ... . .. . . . . .......... ......... .... . . ........... . . .. . . . . . . . .. .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 5555555555 22 5 1 2 8 5555 4 9 22 3 6666666666666666666666 444 9 9 9 99 000 9 66 99 9 9 0000000 6 444444444 99 333 66 0 6 44 3333333 7 5 0 11111 7 9 7 0 1 444 444 1 00 6 0 4 0 3333333333 333333333 1111 0 8 55555555555 0 0 99 2 7 7 2 8 0 7 22 3
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|1 : AAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTCAAAA-TAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAAC-TTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAG--AT---ATT------TTA-------TGT-TTTATAGAA--ATATTGA-TA---A----------C-------T---TTAATTAACTAATGTAT-CAGTTAGA----ATTAC------TTTTAATTAAAA-------GAGA----A--A--TA---------------------AGT-TAT-ATTTCTTTT-------------TTG---AAT---T-C---T--TTGATATTCT-----------TTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC---AA-TAGTaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|11 : attataataacaataatgataataaatTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-AATAAATACAGTCATGTACATTC--AAATACTATGTTAATATGACTGTCATACAATTAA----TT--AGTCATTACATTTCTA-AC--ATATTAA-CGC--A----------T-------T---ATGT-T--TT-TCTTAG-----TAACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AGTTA-----------------TGTTA---TAC-ATGTATTTC--------------TGTTTAA---GT-T---CTTTCGT-ATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT--------------------ATTC--AAATACTA--------------TCACATAGTTAAGTGTCTAA---CAGTGCA----------------CA-TG---------------------------TGA-CAATT-AAACAG-C-----------ATTAC-A--------A--AAAAAA-TA-TTGAGATTGTC--ATCTA----A----GCAC--CGTATTGATGTA----TCAGTCCATAA-------AATTG-------TCT-C---TTCTTGA-TTTATTTATTA-a
gi|15 : ATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCCAGAA-TAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAAATAACT--------ATTTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTT-AAA---------------GATAATTTA--GAGTAAGCTTG
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCA-TC--ATATTCT-TG---AATATACA---T-------TGAAATGA-CAATA-ATATAG-TA--AAGATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAGTTGCTT-A----CCTC--TGTATCA------------------AG-------AGTTGTGCAATATTT-C---TTTTTTA-ATTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGAACAACTATATACCCACTTGCACTTTTTTTGTAAGCTCCTA----ATTCATAAGATGGTTTAGTTTCTT-GGAATAA--------TCG--TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAG-TGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGG-CATTT-AAACAG-CA--TAATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TTCTA----A----CCAC--TGTATCAAC-AAG-AATAA---AAGAACAACAAAAGTTGTGTAGTACAG-----TTTCTGA-ATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AGCAAA----------TACATTC--AAATACTATATTAACAT-ACAATCATA----TAA----TTAAAGTCATTGCATTTCCA-tcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-AACAAA----------TACATTT--AAATACTAAATAAACAT-ACAGTTATACACTTAA----TCAAAGTCATTGCATTTCCA-AG--CTATCCA-TG---A----------T-------T---ATGA-CAATT-GTATAT-CA--TAGAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AAATA----A----TCAC--CGTATCAGT-TAC-ACTTTCTTTAGAG-------AGTTGCGTAATATATAC---TTTTT-A-ATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTCAAAA-TAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAAAAAAGTTT-TAGGATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAAC-TTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ATTTACAC---------AAGTTCTTC----ATTTATAAGAGGGTTCACCTTCTT-GGACAAAA----------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : TATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-AACAAA----------TACATTT--AAATATTACATAAACAT-ACAACCATACAGTAAA----t
gi|23 : ttataataataaattcacC---------AACCTCGTA----ATTCATAAGATGATTTAGACTCT-----------------------AATATG--GAGTAAGCTTCTCGATACATTTA-TAAAT-TTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-AACAAA----------TACATACATAAATAT---ACAAACAT-A-AATCATACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAGA----------TACATTT--AAATACTAAATAAACAT-ACAGTCATACAATTGA----CCAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------A-------T---ATGA-CAATT-GTATAT-CA--CGGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TTTTA----A----TCAC--TTTATCAGT-TAC-ACTTACTTAAGAG-------AGTTACATAATGTTT-------------ACTTTTTAAT--T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTCAAAA-TAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGAAAAA-------------TGCAT---------CAGTTCTTA----TTTTATCAGATGATTTAGCCTCTT-GAAAAAAAAAGA-TGTAGGATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAAC-T-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATTT--AAATTCTAAATAAACAT-GCAATCATACAATTAA----TTAAAGTCATTGCAT------GA--ATAAACAGTG--------------T-------T---ATGA-CAATT-ATATAG-CA--TAGGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--ATTTATTCTA----CCAC--TGTATAAGT-TACGAGTTATTTCAGAG-------AGTTGCGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCCAGAA-TAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGAATCACTATATCTCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATAATTTGGCCGTTT-GAAAAAAA
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-AACAAA----------TACATGC--AAATACTAAACAAACAT-ACAGTCATACAATTTA----TTTAAGTCATTGCATTTCTA-TG--ACATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTATCAGT-TAG-AATTACTTAAGAC-------AGCTGCATAATATTT-C---TTTTTGA-ATTATTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCAAGAA-TAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGAACAACTATATCCACATTTGCAC---------AAGCTCTTA----
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-AACAAA----------TACATTA--AAATACTAAATAAACAT-ACAATCATA----TAT----TCAAAGTCATTGTATTTCCA-AG--GTA
gi|6 : taataatgataaagtgcA-CAATC-ATATATTCA--AAGTC---ATTGT-AT--TTCCAAGGTAGAAA-TA-TTGAGA----T--ATTTA----A----TCTCGTTGTATCAGT-TAG-AATTACTTAAAAG-------AGATGCATCCT-TTT-CCT-TTTTTGA-ATTCTTTAATA-TATTTTGCTTTTCATATACTTTTTGTTATAGAATTTC---A---TA-TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTATCCCAATTTGCAC---------AAGTCCTTT----ATTCATAAGATGATTTACCCTCTT-Ggaaatattgagatatttaatctcgttgtatcagttagaattacttaaaagagatgcatccttttccttttttgaattctttaatatattttgcttttcatatactttttgttatagaatttcatatgagagctctaaaaatagttgggacttttttgtatttgctatattaaggatcagctttatcccaatttgcacaagtcctttattcataagatgatttaccctcttg
gi|7 : taataatgataaagtgcttatttaacgagggtaactcaatcaataacaataactgttctccctgtaggccatcaacaaaacaaatcatgcttataacaaatacattaaaatactaaataaacatAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-AACAAA----------TACATTC--AAATACCAAATAAACAT-ACAATCATACAATTAT----TCAAAGTC--TGCATTTCTA-AG--ATATTCA-TG---GATATGCAATGT-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--ATTTATTCTA----CAAC--TGTAACAAA-TAG-AGTTACTTAAGAG-------AGTTGTGTAATATTT-C---TTTTTGA-ATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGAATCACTGTATCCCCATTTGCAC---------AAGCTCTTA----ATTCA
gi|8 : AA----TTAAAGTCATTGCATTTCTA-AG--ATATTCA-TG---AATATACAATGT-------T---ATGA-CAATT-TTATAG-CA--TAGAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--ATTTA----ATCTACCAC--TGTAATAGT-TAG-AGTTACTTAAGAA-------AGTTGCATATTATTT-C---TTTTTGA-ATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTAAAGGCTTTG----TATTTGTTTAATCTATATTTAGGAATCACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCGTTT-GAAAAAAAGAT--G-TAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAAC-T
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAAACAAA----------TACATTC--AAACAATAATTAAACAT-ACACTCGTACCGTTAA----CAAAAGCAAGTCCATTTCTA-AGATATATTCA-AGAACA----------TACAATAAT---ATGA-CAATC-ATACAG--A--TAGAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TTTTA----AACTTCCAC--TCTATCAG------AATTACTTTCGAG-------AGTTGCGTAATATAT-TATATTTTTGA-ATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCCAGAA-TAGTGAATACTTTG
blockSeqs : TTAA TA TA G T A ACA CAATGGG G A A TACAGTCATG AT T G G GTGT G AT G AATATACAATGT GAA T A T GT CAA T CA AT G T TTGTC G TTCTA GT ATG CG T CA CAACAAA T A G TATA T T T G CAG GAG G TT A C T T CTATATACCC TTTTTTTGT ATTT C A AAAGTTTTAG A T TA C A G G G A AA C
blockSeqs : . . T . . A . . . . . . . T . A . . . . GATATGCAATGT . . . . . . . T GG . . ATA T ATCTA . GT T T AA . T A C CCT . . T C . . . . . T T C CTATATCTCC . . . A AAAGATGTAG C A . T . . T G . . .
blockSeqs : . . T . . T . . . . . . . A . G . . . . AATATACAATGT . . . . . . . T . . . A G TTCTA . AC C A TA . T A T AC . . T G . . . . . T A A CTATATCCAC . . . C AGATGTAA C A . C . . G G . .
blockSeqs : . . T . . T . . . . . . . C . A . . . . AACATACAATAA . . . . . . . . . . . G T ATCTA . GT G C AA . C G A C . . A C . . . . . G T A CTTTATCCCA . . . A TCG A T . C . . T N . .
blockSeqs : . . A . . A . . . . . . . A . A . . . . AATATACAT . . . . . . . . . . . A A AACTT . GT C C CA . C A A T . . T T . . . . . G T T CTGTATCCCC . . . A A A T . T . . . . . .
blockSeqs : . . T . . A . . . . . . . A . G . . . . CAT . . . . . . . . . . . A T CTTA . GT C G AA . C A T C . . T G . . . . . G A C CTATATCCCC . . . A . C A . C . .
blockSeqs : . . C . . A . . . . . . . A . A . . . . AC . . . . . . . . . . . A T A . GT G A AA . C A T C . . G A . . . . . G A C CT . . . . . A T . .
blockSeqs : . . A . . C . . . . . . . A . G . . . . AT . . . . . . . . . . . T T A . GT G A AA . C A T C . . . G . . . . . G T T . . . . .
blockSeqs : . . C . . A . . . . . . . A . A . . . . AA . . . . . . . . . . . T T A . AA G G AA . T A T C . . . A . . . . . T T T . . . .
blockSeqs : . . T . . A . . . . . . . A . A . . . . T . . . . . . . . . . . T T A . GT G G TC . C . T C . . . A . . . . . . .
blockSeqs : . . T . . A . . . . . . . . . C . . . . . . . . . . . . . . . . T T A . G . A T . C . T C . . . A . . . . .
blockSeqs : . . G . . A . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . C . . . A . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : AAATCAT*************** C**** CTATATCCCC ATG********
originalCons : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TG---A----------T-------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNT-C---TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAAAAG--T-TAGGATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
finalCons : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-AACAAA----------TACATTC--AAATACTAAATAAACAT-ACAGTCATACAATTAA----TTAAAGTCATTGCATTTCCA-AG--ATATTCA-TGAAATCAT---------------T---ATGA-CAATT-ATATAG-CA--TAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--ATTTA----A----CCAC--TGTATCAGT-TAN-ANTTACTTNAGAG-------AGTTGCGTAATATNTC----TTTTTGA-ATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCCAGAA-TAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTT-GAAAAAAATG--------GATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 1111111111 77777777777777777 11 33333333333333333333333333 1111111111 11111 2 2222222222 111111111 777777777777777777 1
lowQualScore : 6666 33 55 2 2 1 444 8888888 3 3 3 3 3333333333 44 3 555 3 3 3 555 1 55 33333333333333333 555 1 555 3 00 44 2 5 11111111111111111111111111 666 88 3 1 3333333333 9999999 1 1 44444 0 5 0 1 0 555 555 3 55 3 1 1 1 1111111111 333333333 7777 1 333333333333333333 66 2 66 2 5 5 7 0 2 6 99 3
lowQualScore : .... .. .. . . . ... ....... . . . . .......... .. . ... . . . ... . .. ................. ... . ... . .. .. . . .......................... ... .. . . .......... ....... . . ..... . . . . . ... ... . .. . . . . .......... ......... .... . .................. .. . .. . . . . . . . .. .
lowQualScore : 1111 44 66 7 7 9 444 1111111 1 1 1 1 5555555555 22 1 444 1 1 2 888 0 00 55555555555555555 888 8 444 1 44 22 9 7 99999999999999999999999999 111 66 0 2 8888888888 3333333 1 0 88888 7 3 0 7 7 444 444 1 00 6 0 4 0 3333333333 333333333 1111 8 888888888888888888 00 8 99 2 7 7 2 8 0 7 22 3
consensus : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-A-ACAAA----------TACATTC--AAATA-CTAAATA---AACA-T-ACAGTCAT---ACAATTAATCAAAGTCATTGCATTTCCAAG--ATATTCATGAATAT-CA---T-------T---ATGACAATTATATAGCATAGAT---ATCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--AT----TTA----A----CCACTGTATCAGT-TAC-ANTTACTT--------NAGAG-------AGTTGCGTAATATNT-C---TTTTTGAATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTTGAAAAAA--A------T----G---GATCATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
Reference ( family-254 ) : TCTTTATTTAACGATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCTTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-A-ACAAA----------TACATTC--AAATA-CTAAATA---AACA-T-ACAGTCAT---ACAATTAATTAAAGTCATTGCATTTCCAAG--ATATTCATGAA-AT-CA---T-------T---ATGACAATTATATAGCATAGAT---ATTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----N--AT----TTA----A----CCACTGTATCAGT-TAN-ANTTACTT--------NAGAG-------AGTTGCGTAATATNT-C---TTTTTGAATTCTTTAATA-T-CTTTGCTTGTCGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAANACTTTGTTTGTATTTGTTTAATCTATATTTAGGAANAACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCTCTTGAAAAAA--A------T----G---GATNATCNG--GAGTAAGCTTGTTGACACATTTA-TAAAC-TTTTATCGCTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCCGAAACAATGGTCTAGATGGAGAATCATATGGCATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|1 : AAGTCATTGCATTTCCAAG--CTATCCATGAA-----------------T---ATGACAATTGTATATCATAGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AA----ATA----A----TCACCGTATCAGT-TAC-ACTTTCTT--------TAGAG-------AGTTGCGTAATATATAC---TTTTT-AATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCCTC-AAAATAGTGAATACTTTCTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAA--AAAAG--TTTTAG---GATCATCAG--GAGTACGTTTGAAAACACATTTA-TAAAC-TTTNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATG
gi|10 : TCTTTATTTTACGATGATA----ACTTGAT--CAAT-T-A-CAGCAAC---TGTTCTCCCTAGAA-------GCCACAAATAGAGAA-TATCATTGTT-AT-A-ACAAA----------TACATTC--AAATA-CTAAATA---AACA-T-ACAGaggttatttaacagtgatgagtacaatactgagttctattggacgagtacgcagcagtaataatccaaatatggattattactgctgtatacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataatggattttattgacaatttgaaaatttcctatttttcataaaacttatgtcatatgtgtttttacgtgatataacaaaactgtacaattttcaactttgaaaacaataaa
gi|10 : attataataacaataatgataataaatACAGAT---ATTTT-AT--GTTTTA--TAGAAA-TA-TTGATA----A--CTTTAATTA----A----CTAATGTATCAGT-TAG-AATTACTTTTAATTAAAAGAG-------AAATAAGTTATATTT-CT--TTTTTGAATTCTTTGATATT-CTTTGCTAGTTGTACACTTCGG-----AGAGTCCC---AGAGTAGTGATTTAGCCC----AATAGTatattttatgttttatagaaatattgataactttaattaactaatgtatcagttagaattacttttaattaaaagagaaataagttatatttcttttttgaattctttgatattctttgctagttgtacacttcggagagtcccagagtagtgatttagcccaatagt
gi|11 : attataataacaataatgataataaattctttattttacgatgataacttgatcaattacagcaactgttctccctagaagccacaaatagagaatatcattgttataacaaatacattcaaatactaaataaacatTCAAT--GAATATGA-CAATAAT---TGCTCTGACTTGAG-------ACCATAAACAGAGCA-GGTCATCGTTAAT-A-ATAAATACAGTCATGTACATTC--AAATA-CTATGTT---AATA-TGACTGTCAT---ACAATTAATT--AGTCATTACATTTCTAAC--ATATTAACG------CA---T-------T---ATGTT--TTTCTTAG--TAACC---ACTGT-ATCAG---TA--AAAAAA-TATTTAAGA----G--AG----TTA---------------TGTTA---TAC-ATGTATTT--------C--------------TGTTTAA---GT-T---CTTTCGTATTCTGTA-----------CTTGTCCTGCACTTGGGG
gi|12 : ttaataataataaattatttttTTACTTGACGATGGTA----ACTCATTTACAGT-T-A-CAATAACACATG-TCTTTAATGAG-------GTTGTCAACAGA-CAGGGTCATGGTT-AT-ATTCAAA----------TACTATC--ACATAGTTAAGTGTCTAACAGT-GCA--CATGTGACAATTAA--ACAG-CATTACAa
gi|12 : AAAAA-TA-TTGAGATTGTC--AT----CTA----A----GCACCGTATTGATGTA----TCAGTC--------CATAA-------AATTG-------TCT-C---TTCTTGATTTATTTATTA-aaaaaaatattgagattgtcatctaagcaccgtattgatgtatcagtccataaaattgtctcttcttgatttatttatta
gi|15 : ttacttgacgatggtaactcatttacagttacaataacacatgtctttaatgaggttgtcaacagacagggtcatggttatattcaaatactatcacatagttaagtgtctaacagtgcacatgtgacaattaaacagcattacaaaATA-T-TATAGCTTTTTG--CAATTGGGGCTATAGCATTCCCAGA---TA-TAA--GAGACCC-AGAATAGTGAACACTCTGTTAATATTTGTTTAATCTTCATTTAGAAATAACT--------ATTTACAC---------AAGTTCTTAATTTATTCATAAAATAATTTAAACTCTTAAA----------------------GATAATTTA--GAGTAAGCTTG
gi|16 : atattttggcttcagccctccAGAGTCATTGCACTTCCATC--ATATTCTTGAATATACA---T-------TGAAATGACAATAATATAGTAAAGATCAAATCATTAT--GATTTA--TGGAAA-TA-TTGAGA----ATAAG----TTGCTT-A----CCTCTGTATCA--------------------------AG-------AGTTGTGCAATATTT-C---TTTTTTAATTCTTTGATATT-CATCTCTTGTCCTACACTTTGGTTTATAGAGTTCC---A---TA-Taa
gi|17 : aATTTAGGAACAACTATATACCCACTTGCACTTTTTTTGTAAGCTCCTA----ATTCATAAGATGGTTTAGTTTCTTGGAATAA--T------C----G-----TC-TCAGTAGAGCAAG-TTGTTGACACATTTAATAAAG-TGT-ATTGCTTATTGAAAATGTAATTCGTTCTGCAATATTT--AACCGTTTAAGCTCCCGA
gi|18 : ---ACGGCATTTAAACAGCATAATT---ATT---AT--GTTTGA--TAAAAAGTA-TTGCAA----A--TT----CTA----A----CCACTGTATCAAC-AAG-AATAA-----------AAGAACAACAAAAGTTGTGTAGTACAG-----TTTCTGAATTCTTTGATA-TTCTGTGCATGTCTTACAATTAGGGCTATAGAGTTCC---A---CA-T
gi|19 : tacagtaTCTTTTTTTAACGATGGTA----ACTTTAT--CAAT-T-A-CATTAAC---TGTTGTCCATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-A-GCAAA----------TACATTC--AAATA-CTATATT---AACA-T-ACAATCAT---A----TAATTAAAGTCATTGCATTTCCAtcga
gi|2 : aataaatTCTTTATTGAACGATGGTA----ACTCAAT--CAGT-T-ATCATTAAT---TGGTCTACCTTGAG-------GCCATCAACAAAGCA-AATCAGGGTT-AT-A-ACAAA----------TACATTT--AAATA-CTAAATA---AACA-T-ACAGTTAT---ACACTTAATCAAAGTCATTGCATTTCCAAG--CTATCCATGA----------T-------T---ATGACAATTGTATATCATAGAT---AGTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--AA----ATA----A----TCACCGTATCAGT-TAC-ACTTTCTT--------TAGAG-------AGTTGCGTAATATATAC---TTTTT-AATCCTTTAATA-T-CTTTGCTTGTTGTACACTTGGGGTTGTAGAGTTCC---A---TA-AGA--GAGCTTC-AAAATAGTGAATACTTTGTTTGTATTTGTTTAATCTATATTAAAGAAAAA-------------TGCAC---------AAACTCTTA----TTATATCAGATATTTTAGCCTCTTCAAAAAA--AAAAG--TTTTAG---GATCATCAG--GAGTACGTTTGTTAACACATTTA-TAAAC-TTTTATTGTTTTATGAAAATGTA-TTCGTTCTGCAATATTT--AACCATTTAAGCTCCTGAAACAATAGTCTAGATGAAAAATCATATGGTATATCAAGAATGATTCTAGCTGTTTTCTTTTGGAATTTTTCATATTCTACTGACATTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGA-TGGTAGTATATTATGtgtta
gi|20 : ATTTACAC---------AAGTTCTTC----ATTTATAAGAGGGTTCACCTTCTTGGACAAA--A---------------GATAAACTG--GAGTCAGCTTGTTGATGCATTTA-TAAACGTGTTCTC-CTTTATGGGAATTTA-TTTGTTCTGTAATATTTAAAACCATTTACACTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggcgaag
gi|21 : TATTGAACGATGACA----ACTTAAT--CAAA-T-A-CAATAAC---TTTTCTCCCTTGAG-------GCCTTCCACAGAG------CATGGGT-AT-A-ACAAA----------TACATTT--AAATA-TTACATA---AACA-T-ACAACCAT---ACAGTAAAt
gi|23 : ttataataataaattcacC---------AACCTCGTA----ATTCATAAGATGATTTAGACTCT-------A--A------T---------AT-----G--GAGTAAGCTTCTCGATACATTTA-TAAAT-TTGTATCGCTTTATGAAAATGTA-TTCGTTCTGTAATATTT--AACCATTTAAGCTCCCAAA
gi|25 : TGAG-------ACCATCAACAGATCA-AGTCCAGGTC-AT-A-ACAAA----------TACATACATAAATA-T---ACA---AACA-T-A-AATCAT---ACAA
gi|26 : TCTTTATTTAACAACAGCA----ACACAAT--TAA-------AATAAC---TTTTCTCCCTTGAG-------ccacacaaaaaatt
gi|27 : gtcatagtaataaagTCTTTATCTAACGATGGTA----ACTCAA-----------------AC---TGTTCTCCCTttccccaa
gi|28 : taagaataatgatgatattaatgttaaatTCTTTATTCAACAATGGTATTAAACACAAT--CCAT-T-A-CAATAAC---TTTTCTCCCTTGCA-------ACCAT
gi|29 : atTCTTTATTTAACGATGATA----ACTCAAT--CAAC-T-A-AACTATG---TGTTTTCCCTCGAG-------GCCATCAACGA
gi|3 : TCTTTATTGAACGATGGTA----ACTCAAG--CACA-T-A-CA-TAAC---TGTTCTACATTGAG-------GCCATCAACAAAGCA-AATCATGGTT-AT-A-ACAGA----------TACATTT--AAATA-CTAAATA---AACA-T-ACAGTCAT---ACAATTGACCAAAGTCATTGCATTTCCAAG--ATATTCATGAA-----------------T---ATGACAATTGTATATCACGGAT---AGCGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----A--TT----TTA----A----TCACTTTATCAGT-TAC-ACTTACTT--------AAGAG-------AGTTACATAATGTTT------------ACTTTTTAAT--T-CTTTGCTTGTTATACACTTGGGGTTATGGAGTTCC---A---TA-TGA--AAGCCTC-AAAATAGTGAATACTTTGTTTATATTT-----ATCTATATTTAGGAAAAA-------------TGCAT---------CAGTTCTTA----TTTTATCAGATGATTTAGCCTCTTGAAAAAA--AAAGATGTA---G---GATCATCAG--GAGTACGTTTGTTGAGACATTTA-TAAAC-T-TTNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGACATTAGTGTAGATTCTCAAATAGCGTCTCGTCTCCATAATCTAAGACTGGTTGCATA
gi|30 : taataaaaataattTCTTCATTTAACGATAGTA----ACTCAAT--TA
gi|31 : taataataatgataataataataaatAATGGTTTAGATGGAGAATCATATGGCATATCc
gi|4 : TCTTTATTTAACGATGGTA----ACTCAAT--AAAC-T-A-CAATGAC---T-----CCCTTGAG-------CCTACCAACAAAGCA-AAGCATAGTT-AT-A-ACAAA----------TACATTT--AAATT-CTAAATA---AACA-T-GCAATCAT---ACAATTAATTAAAGTCATTGCAT------G--A-----ATAAACAG-TG---T-------T---ATGACAATTATATAGCATAGGT---ATTGT-AT--GTCTTA--TAGAAA-TA-ATGAGA----T--AT----TTATTCTA----CCACTGTATAAGT-TACGAGTTATTT--------CAGAG-------AGTTGCGTAATATTT-C---TTTTTGAATTCTTTAATA-TTCTTTGCTTGTTGTACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GTGCCCC-AGAATAGTGAAGAATTTGTTTGTATTTATTTAATCTATATTTAGGAATCACTATATCTCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATAATTTGGCCGTTTGAAAAAA--A------
gi|5 : CTTTATTTAACAATGGTA----ACTCAAT--CAAT-T-A-CAATAAC---TGTTCTCCCATGAGCAATGGGGCCATCAACAAAGCA-AAGCATAGTT-AT-A-ACAAA----------TACATGC--AAATA-CTAAACA---AACA-T-ACAGTCAT---ACAATTTATTTAAGTCATTGCATTTCTATG--ACATTCATGAATATACAATGT-------T---ATGACAATTATATAGCATAGAT---ACTGT-AT--GTCTTA--TAGAAA-TA-TTGAGA----T--AT----TTA----ATCTACCACTGTATCAGT-TAG-AATTACTT--------AAGAC-------AGCTGCATAATATTT-C---TTTTTGAATTATTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGGGTTCC---A---TA-TGA--AAGCCCA-AGAATAGAAAAGACTTTGTTTGTATTTGTTTAATCTATAATAAGGAACAACTATATCCACATTTGCAC---------AAGCTCTTA----
gi|6 : TTATTTAACGAGGGTA----ACTCAAT--CAAT-A-A-CAATAAC---TGTTCTCCCTGTAG-------GCCATCAACAAAACA-AATCATGCTT-AT-A-ACAAA----------TACATTA--AAATA-CTAAATA---AACA-T-ACAATCAT---A----TATTCAAAGTCATTGTATTTCCAAG--GTA-----GAA-AT--A---T-------T---GAGATATTTA----------AT---CTCGT--T--GTATCAGTTAGAAT-TACTTAAAA----G--A-------G----A--------TGCATCCTT-TTC-CTTT--TT--------T---G-------AATTCTTTAATATA-------TTTTG---CTTTTCATA-TACTTT--TTG--------------TTATAGAATTTC---A---TA-TGA--GAGCTCTAAAAATAGTTGGGACTTT-TTTGTATTTG------CTATATTAAGGATCAGCTTTATCCCAATTTGCAC---------AAGTCCTTT----ATTCATAAGATGATTTACCCTCTTG
gi|7 : taataatgataaagtgcAAC---TGTTCTCCCTTGAG-------GCCATCAATAAAGCA-AACCATAGTT-AT-A-ACAAA----------TACATTC--AAATA-CCAAATA---AACA-T-ACAATCAT---ACAATTATTCAAAGTC--TGCATTTCTAAG--ATATTCATGGATATGCAATGT-------T---ATGACAATTATATAGCATAGAT---ATTGT-ATT-GTCTTA--TAGAAA-TA-TTGAGA----T--AT----TTATTCTA----CAACTGTAACAAA-TAG-AGTTACTT--------AAGAG-------AGTTGTGTAATATTT-C---TTTTTGAATTCTTTAATA-TTCTTTGCTTGTCATACACTTGGGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTGAAGGTTTTGTTTGTATTTGTTAAATCTATATTTAGGAATCACTGTATCCCCATTTGCAC---------AAGCTCTTA----ATTCA
gi|8 : AATTAAAGTCATTGCATTTCTAAG--ATATTCATGAATATACAATGT-------T---ATGACAATTTTATAGCATAGAT---ATTGT-ATT-GTCTTG--TAGGAA-TA-TTGAGA----T--AT----TTA----ATCTACCACTGTAATAGT-TAG-AGTTACTT--------AAGAA-------AGTTGCATATTATTT-C---TTTTTGAATTTTTTAGTA-TTCTTTGCTTGTCATACACTTGAGGTTATAGAGTTCC---A---TA-TGA--GAGCCCC-AGAATAGTAAAGGCTTTG----TATTTGTTTAATCTATATTTAGGAATCACTATATCCCCATTTGCAC---------AAGCTCTTA----ATTCATAAGATGATTTAGCCGTTTGAAAAAAAGA------T----GTAAGATAATCTG--GAGTAAGCTTGTTGACACATTCA-TAAAC-T
gi|9 : AAC--CAAG-T-A-CAATAAC---TGTTCTCCCTTGAG-------GTCACCCAGAAAGCA-AATCATGGTT-AGAA-ACAAA----------TACATTC--AAACA-ATAATTA---AACA-T-ACACTCGT---ACCGTTAACAAAAGCAAGTCCATTTCTAAGATATATTCAAGAA----CA---TACAATAAT---ATGACAATCATACAG-ATAGAT---ATTAT-AT--ACCTGA--TAGGAA-AA-TTGAGA----A--TT----TTA----AACTTCCACTCTATCAG------AATTACTT--------TCGAG-------AGTTGCGTAATATAT-TATATTTTTGAATTTTTAAATA-TGTTTTTCTTGTCGTACACTTGGG----TAG-----C---A---TA-T------GCCCC-AGAATAGTGAATACTTTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTGTACGAGTCCAAATGAATTCAGTATTGTACTCAACACTGTTAAATGACCTATTTATTTCACACCATAATAAATAATGACAAATGACGGGAAAAGTACCATTTACATAACGGATTTTATTAACAATTTGAAAATTTCCTATTTTTCATAAAACTTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|14 ): GCTGCGTACTCGTCCGATAGAATTCAGTATTGTACTCATCACTGTTAAATGACCTCTTGATTTCACACCATAATAAATAATGACAAATGACAGGAAAAGTACCATTTACATAACGGACTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAA
Unaligned ( gi|22 ): ACGGGAAAAGTACCATTTACATAACGGATTTTATTGACAATTTGAAAATTTCCTATTTTTCATAAAAATTATGTCATATGTGTATTTACGTGATATAACAAAACTGTACAATTTTCAACTTTGAAAACAATAAA
Unaligned ( gi|24 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA