lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 9999999999999999999999999999999 22 44444444444444444444 222222222 333 1 222222 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 111111111 555555555555555555555555 2222
lowQualScore : 0 444 0000000000000000000000000000000 2 55 555 44444444444444444444 777777777 3 7 888 6 4 5 000000 5 66 0 4 1 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 555 222 11 777 222222222 44 66 6 9 1 888888888888888888888888 5 5 4 1111 8 5
lowQualScore : . ... ............................... . .. ... .................... ......... . . ... . . . ...... . .. . . . . ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ... ... .. ... ......... .. .. . . . ........................ . . . .... . .
lowQualScore : 7 000 3333333333333333333333333333333 5 22 777 88888888888888888888 555555555 7 5 888 6 0 0 333333 0 11 1 4 9 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888 555 88 888 333333333 22 55 2 8 9 333333333333333333333333 0 0 3 5555 0 0
consensus : GGACGATGCCCTTTCA--ATT--CTTTTTTNANAT----CGGTCATCAAAGATGG-CCATCGGGGCCCC--GCC-AG--TG-TTTTNNATTT--T-AAAACTTTAAACGACATCTC-TCTGAAACCACTG-AA-CNTA-TTTCATTG--AAATT-TTGCTGAAA-TGTTNCCNNNGTGA---C---C-----TACCAAN--NG-TGT---GTTT--TTT-T--GTCCGAGCGTCA---A--A---------C---ATG--GC--C-----NCCAG-----GATTA---TT-C---CTTTA--CATAGGATTTTATAAN----AGGTAAAA-T---CT---------TTTCT--C--GAA--CC-ACN-GACTCGA---T-TTTAATAAA---A-CTTGGC-CA-C---A-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------TATTT--GG--ATT---TT--TCG--ACGTCGGTC-A----------TCCAA---GATGGCCG-CCAN---GG--CC-CCGCCCA--TN--T-----NT-T----A----TTTTG-AA-A-C-TTAAAN-----CGACATCTC----ANCT--T---A----AC---T---GAACCATTTTC--ATT---------G--AA-ATT-TTACTGAAA-TG--TA---CGCTC----G---TGACC-C-TCT-NCCAAAAGTA-TGGGTTTTT
Reference ( gi|2 ) : GGGTGATGCCCCTTCAGAATT--TTTTTTTTAAAT----CAATAA-CAAAGATGG-ACATCAAAACCCA--GCCCAG--TG-TTTCTCATTT--T-AAAGCTTTAAATGACATTTTGTCTGAAATCATTG-AA-CATA-TTTGATTG--AAATT-TTGCTGAAA-TGTTTCCTCTGTGA---C---C-----TATCAAA--TA-TGT---GTTT--TTT-T--GTACGAGCTTCA---A--A---------C---ATG--GC--C-----TTTAG-----GATTAG-ATT-----CTTTA--CATAGGATTTTACAAC----AGGTAAAA-T---CT---------TTTCT--C--AAA--TC-ACC-AACTTAA---T-TCAAATAAA---A-CTTAGT-CA-C---A-------ATGTACCTTGGATAGTGTCCT---TTCAGA---------TATTT--GG--ATT---TT--TCT--ATGTCGGTC-A----------TCCAA---GATGGCTC-CCAT---GG--CC-TTGCCCA--TA--T-----GT-T----A----TTTTG-AA-A-C-TTAAAT-----TGACATCTT----ATCT--T---A----AC---T---GAACCATTTTC--ATT---------G--AA-ATT-TTACTGAAA-TG-CTA---TGCTC----A---TGACC-C-TGT-CCAAAAAGTA-TGGGTTTTTA
gi|3 : GGACAATGCCCTGTCA--ATT--TT---TTTACATTGGCCAGT---CAAA-ATGG--CATTGAGGACCACCGCC-----TGATTTTAGATTT--TGAAAATTTTAAGTGACATCTTA---GAAACTA--GAAA-CAT--TTTCAGTG--GAATT-TT-CTGAGATTATTTCCTTGATGAT--C---C-----TGT
gi|6 : tgaggttggccatctaagatttctgacaacgccctgccaagtttttatttcaaaactttaaacaatatctctgaaaccaacatatttctgtggaattttgctgaaatgttactctaccgaaattgtgttgtttttttctgtccgagtgcgaagcaagattgcatgccgccaaatgtttttattcttacataggattttacttggggacgatcttttctgactcaattttgataataaaactttgctacaatgtaccttGGATGATGCCCTTTC----------TTTTTGAGGT----CAGTCATCAAAGGTTG-CCGTCTGGGCCC-----CCAA--GG-TATTTCATTT------A-----AAAT-ACATCT---CTGATGCCACTG-AA--GTAGTTTCATTG--AA--T-TTGCTGAAA-TGTATA----GTGA---CCCTC-----TACCGAG--GG-TGTTTGGTTTTATTT-T--GT-CAAA---CA---A--A-------------ATG--GCCAC-----CTT-------GA-------------CTTTG--C-CA--ATTTTGT-AC----AGGGAAGA-T---CT---------TT--------GAA-----ACC--ACTCAA---T-TTTATTAAA---A-CTTAGC-CC-C---A-------Atttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|15 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttGGGTGGTAT---TTCAGAATTACCTTTTTTAAAAT----TGGTCATCCAAGACGG-CCACCAGGACCCC--ACCGAGTTTG-TTTgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|12 : taaaatattcttttctgaatctactgactctattttaataacaaatgacctaaatgtactgtgggtggtgccgtttcagacatGATGGCAAATTTAGACCCC--ATCCAG--T---TTTAAATTT--T-GAAACTTTAAACGATATCTC-TCT--AATCACTT-AA-T-CA-TTTTCTTGTTAAATTGTTACTgttt
gi|3 : aaccacagactcgattttaataatacttgacatcagtgtactttaagtaataacctcaattcagaagtattttgtgtttttacgttccaacctCAACGCCCT--GCCAAG--TT-TTT---ATTT--C-AAAACTTTAAACAATATCT---CTGAAACCA-----A-CATA-TTTCTGTG--GAATT-TTGCTGAAA-TGTT-ACTCT---A---C---C-----GA--AAT--TG-TGTT--GTTT--TTT-TCTGTCCGAG-TGCG---A--AGCAAGATTGC---ATGCCGC--CAAATGTTT---------TTA---TT-----CTT-A--CATAGGATTTTACT-T----GGGGACGA-T---CT---------TTTCT-----GAC--TC-A---ATTTTGA---T----AATAAA---A-CTTTGC-TA-C---A-------ATGTACCTTGGACAATGCCCT---GTCA----------------------ATT---TT--TTT--ACATTGGCC-A----------GTCAA---AATGGCAT-TGAG---GA--CCACCGCCTG---A--T-----TT-TAG--A----TTTTGAAA-A-T-TTTAAG-----TGACATCTT----AGA-------A----AC---TA--GAAACATTTTC--AGT---------G--GA-ATT-TT-CTGAGA-T---TA---T-TTCCTTGA---TGATC-C-TGT-
gi|24 : tgaggttggccatctaagatttctgaAGAAACCA--GCC-AG--T---TTCTTATTT--G-AAAAATTTAAACGACATGTCATCTGAAAACACTG-AA-CTTA-TTTTATTG--tttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|23 : atATTTGGT-AAA--TTCAAATAACATCTT---TGAAACTGTTG-AAACAC--TTTCATTG--CAATT-T-GCTTAAC-TGTTTCC-CTG
gi|18 : ttagTCTGAATGCAATG-AA-CCAA-TTTTATCG--AAATT-TTGCTGAAA-GGTTACTCAAGTAATATT---C-----TCTC-AT--TAGTGT---TTTT--TTT-T--GTCTCAGCGTCAAACA--A---------C---ATG--GA--C-----GCCAGTTCTTGACCAATATTTTA--CTCTATTCATCGGATTTTAgtaaaccttct
gi|10 : catcTCTGAAACTACTG-AA-C-TA-TTTTCTTG--AACTT-TTATTAAAA-TATTCCTAAAGTGA---C---CGCATGTGCCAAA--CG-TAT---GTTtt
gi|21 : tttatgttgctggcagccatccatgattgtatccaggactccgtttattagatttttccaatactagcaacatc-TTTTATTG--AAATT-TTTCTGAAA-TGTAACTGTTGTGA---CCCTC-----TACTAAAATTC-TTT---ATTT--TTG-A--GTCTGGGCATCA---G--A---------CAAGATG--GC--C-----atacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|7 : acTT-TTGATGAAT-TATTACCTTAGTAA---C---CGTC--TACTAAA--AT-TGT---GTTT--TTTGT--GTGCGAGCATCA---ACAA---------G---ATG--GC--C-----ACCAA-----GGTT----TTGCCTATTTTG--CGTAGG--TTTATA-T----AGAGAAAACT---CTGCAATATTGTTTCC--CTGAAA--CC-ACT-GACTCTA---T-TTTAGTAAATTAA-CTTAAC-CA-C---ACATATAAATGTACCTCAGGCTGTG-CCT---TTTAAA---------AATT---GGCTGTT---TTAATCG--ATATCGATC-A----------TCCAA---GATGGC------T---GG--C---TGCCCAGTTATTT-----TT-T----A----TTTTG-CA-A-C-TTTAAT-----AGACact
gi|1 : ttcaatttactttgctatggTTTA--CATGGGTTTGTATAAGGAAAACGTAAAA-TA--TT---------TTTCTGCC--AGAAGGC-ACA-GATTCAG---T-TT---TAAA---A-CTTGGT-TA-C---A-------ATGTACCGTGTGTGGTGTTCT---TCAAG------------TTT---A--ATG---TT--T-----TATTAATC-A----------TCCAA---A-----TCATCATCTGGG--CC-CTGACCA---A--T-----TC-TAG--A----TTTTG-AA-AGT-TTAAA------TG-----CT----ATTT--TTGAA----AC---TCTCAAACAATTTTC--ATT---------A--GA-ATT-TT-CTCAGATTG-TCT---CGCTT----G---AGACC-C-TCT-TCCAAAATTA-TG
gi|19 : TAGG--TTTATATA----AGGTACAT-T---CT---------TCTCT--A--AAA--CC-ACTGAAC--AG---T-TTTAGTAAA---A-CATGGC-CT-C---A-------ATGCACCTTG--TA-----CT---TTCA---------------T--G----TT---TT--TTG--ACGTCTGTC-A----------TCCAA---GATGGTCG-CCAG---GT--CC-CTACCtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|6 : ccTAACA-T---CT------------CT--G--AAA--TC-ACA-TACTCAA---TGTTTAATAAA---AACTT-GTGCA-C---A-------ATGTATTTTGGATGATGCCCT---TTC-------------------------T---TT--TTG--AGGTCAGTC-A----------TCAAA---GGTTGCCG-TC-T---GG-------GCCCC--CA--A-----GG-T----A----TTTC-----A-T-TTAAAA-----T-ACATCT-------CT--G---ATGCCAC---T---GAAGTAGTTTC--ATT---------G--AA---T-TTGCTGAAA-TG--TA---TA-------G---TGACC-C-TCT-ACCGAGGGTGTTTGGTTTT
gi|15 : TAAAA-TATTCT---------TTTCT-----GAA--TCTACT-GACTCTA---T-TTTAATAAC---A----AAT-GA-CCTAA-------ATGTACTGTGGGTGGTGCCGT---TTCAGACATGGGTGGTATTTCAGA--ATTACCTT--TTTTAAAATTGGTC-A----------TCCAA---GACGGCCA-CCAG---GA--CC-CCACCattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|20 : AAAA-T---CT---------TTTTG--C--AAC--T--ACT-GAATCAAATCT-TTAAACAAC---A---TGGT-CA-C---A-------ATGTACCTTTGATGATG-CCT---TTTAAAGTGCAT---TGTTT------ATT---TT--TTT--A-ACTGCTC-A----------TCCAA---GTTGGTCG-CCAgagtttgtttgttt
gi|12 : AA--CC-ACA-GACTCGA---T-TTTAATAAT---A-CTT-GA-CATC---A-------GTGTACTTTAAGTAATAACCTCAATTCAGAAG-------TATTT--TG---TG---TT--TTT--ACGT-----------------TCCAACCTGATGGC---AAATTTAGA--CC-CCATCCA------------GT-TTTAAA----TTTTG-AA-A-C-TTTAAA-----CGATATCTC-----TCTAAT---C----AC---T---TAATCATTTTC---TT---------GTTAA-ATTGTTACTgg
gi|26 : ACAAA---A-TTTGGC-TA-C---A-------ATGTAACTTGGGCGATGCCCT---TTCA
gi|25 : AA---A-ATTGGC-CA-C---A-------TTGTCTTTTGAATAGTGTCCT---TTCAGA---------T-TTT--AG--TTT---TT--TC
gi|11 : CCT---TTCAGA---------CTTTT--G----------T--TCG--ATGTCAGTCGA----------TTTAA---GATGGCAG-CCAG---GG--CC-CCTCCTA--T------------T---------TTTTA-AA-A-----AAATGTAGGTGAAAT-------ATCT--TC--A----AT---TC--GAATCATTTTCA-ATT---------A--TA-GTT-TT-CTTAAT-TG-TTA---CCCTA----G---TGAAC-C-
gi|13 : tacT---TTCAGA---------AATTC--GGT-ATT---------G--ATATTGGTC-ACCCACCCCCTCCCAA---GATGGA-C-GCAA---GGATCC-CCGTTCA--TC--T-----TTAT----A----TTTTG-AC-C-T-TTGAA------CAACATTTTTAGAAGCT--T---------T---T---GAACAATTTTC--ATT---------C--AA-TGT-TTGTTAAAT-TG-ATATCTTGCTC----------ACC-C-TCT-ATAAAAAGTG-TGGTTTgctactgaagttatttgtttatgttcgaacgtgaaacaaaatggccaccatggattggcc
gi|5 : TTT--G-----T---TT--TAC--ATAT--GTC-A----------TCCAA---AATGGC----------GG-----TTGGCAA--TT--T-----TA-T----A----TTTTG-AA-A-A-TAAAAA-----TGACATCTCTGA-AACT-----------AT---T---GATAAATTTTC--TTC---------A--AA-CTT-TTATT
gi|10 : tTGGCAGCC-A----------TCCAT---GATTGTAT-CCA----GG--AC-T---CCG--TT--T-----AT-T----AGATTTTTCC-AATA-C-T---AG-----CAACATCTCTGA-AACT-----------AC---T---GAACTATTTTC---TT---------G--AA-CTT-TTATTAAAA-----TA---TTCCT----AAAGTGACCGCATGT-GCCAAACGTA-TGattttgcttccctggttctacattgtgtttgttttgtctacgtttgccatcaggctccgctattttacatagattaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|4 : tttatgttgcGTC-A----------TCCAA---AATTGCAG-TTGG---AG--CC-CTGCCCA------------GT-TTTAGA----TTTTG-AA-AGT-TTAAAA-----AAACATCTC----G---------A----ACTGTT---GAATTATTTTTAGATT---------G------TT-TCACTttatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|22 : C-A----------TCCAA---TATAGCCA-CCAA---GA--CC-CCGTTCA--TT--T-----AT-TTG--A----TTTTG-AA-C-C-T-------------CCTCT-----GTCA--C---T----AC---T---GAACCATTTTC--ATT---------G--AATATT-TCACtgtgagcctttactaccgaatggccaccagggctctgttgttttaacatatgctaatatagaaataagtttactcttctcttaaacgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|8 : ga----------TCCAA---GATGGCTG-CCAT---GA--CC-TTGTCCA--TT--TTAAGAAT-T----GT---TTTTC-AA-A-CATTAAGC-----AGA-ATATT----TTCT-----------AT---T---GAACTATTTTT--ATCTACTATTAAG--AA-ATTGTTTCTTAAG-TGACTG---CGCT-----------------TGT-C--AAAATTA-T--GTTTTT
gi|18 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatat---T---GAACCAATTTT--ATC---------G--AA-ATT-TTGCTGAAA-GG-TTA-----CTC----A---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
gi|21 : catctctgaatgcaaACTTTT--ATT---------G--AA-ATT-TTTCTGAAA-TG--TAAC-TG-TT----G---TGACC-C-TCTACTAAAAagtaatattctctcattagtgtttttttttgtctcagcgtcaaacaacatggacgccagttcttgaccaatattttactctattcatcggattttatt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TAGATATTGAAAATTTAAATGGCATCACTGGAACTGTTCAACCATTTTCATTGACCTTTTTAGATTGTTTCCTAGGTGACTCTCATAATTATGTTGATACATGATAACATGATAGAAGCTATTATAATATAGGCTAACAAAAGGCATTTAATTTTGCAATAAGTACAAACACATCGTGTCTTTCAAATCATGTGATTCTATCAGTTATCCGATATGGCTGCCTGGATTCAGCTTGTTTTAAGAAGTTCAAACAGTAAGCAATATCTTCTGTGAAAAC
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT
Alignments
lowQualScore : 4444444 111 333333 111111 222222 222222 11111 2222222222222222222222222222222222222222222222 3333333333333333 77777777777777777777777777777777 22222222 111 33333333333333333333 1111111 888888888888888888888888888888888 11 1111111111 222222222222222 66666666666666666 111 222222222222 1 1 44444444 1111
lowQualScore : 0 7777777 1 1 1 4 4 4 1 888 111 1 4 7 444444 55 7777 444444 5 1 2 3 111111 8 3 3 333333 777 0 5 00000 44 2 4444444444444444444444444444444444444444444444 3 8888 55 99999 1 3333333333333333 777 1 11111111111111111111111111111111 77 0 2 6 5 88888888 3 222 22222222222222222222 9999 2 6 55 4 777 1 555 3 0000000 22 555 111111111111111111111111111111111 55 11 44 3 3333333333 555 3 0 22 44 3 2 2 4 555555555555555 4 66 4 8 888 88888888888888888 333 0 222222222222 55 0 0 1 6 55555555 0000 3 8 5
lowQualScore : . ....... . . . . . . . ... ... . . . ...... .. .... ...... . . . . ...... . . . ...... ... . . ..... .. . .............................................. . .... .. ..... . ................ ... . ................................ .. . . . . ........ . ... .................... .... . . .. . ... . ... . ....... .. ... ................................. .. .. .. . .......... ... . . .. .. . . . . ............... . .. . . ... ................. ... . ............ .. . . . . ........ .... . . .
lowQualScore : 7 2222222 0 0 1 4 4 8 1 666 666 9 0 3 666666 22 1111 222222 2 2 2 3 222222 9 1 1 555555 999 9 2 44444 77 9 7777777777777777777777777777777777777777777777 3 3333 00 22222 6 7777777777777777 000 0 88888888888888888888888888888888 99 1 5 5 7 55555555 1 222 88888888888888888888 4444 4 2 55 0 000 3 888 3 8888888 88 888 999999999999999999999999999999999 00 88 44 0 5555555555 444 1 7 88 66 3 9 6 0 000000000000000 4 22 4 1 111 55555555555555555 888 2 000000000000 44 0 2 0 7 22222222 6666 8 0 0
consensus : GGACGATGCCCTTTCAG-ACTTTTTTTTGACGTCGGTC-A-TCNAAGATGGCCGTC-G-GGGCC-CCGCC-AATG-TTTTANA----TTT--T---AAAANTTTAAACGA-CATCTC-TCT-GAAACCATTG-A-A-CATA-TTTC---ATTGAAATTTTGC---TGAAA-T-GTTN--------C--CCNNGT-G-A---C---C-----TACC--AANNGTG-T---GTTT--TTT--T--GTCCGAGCGTCA---A--ACAA-A----TG---GCCGCCA-G-----GA-----T----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TT---TAATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGC-CGCCAGGG--CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAAC-TTTAANCGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAA-TGA-TAT--CGCTCGTGACCCTCTNCCAAAAGTA-TGGGTTTTT
Reference ( family-2529 ) : GGACGATGCCCTTTCA--ATTCTTTTTTNANATCGGTC-A-TCAAAGATGGCCATC-G-GGGCC-CCGCC-AGTG-TTTTNNA----TTT--T---AAAACTTTAAACGA-CATCTC-TCT-GAAACCACTG-A-A-CNTA-TTTC---ATTGAAATTTTGC---TGAAA-T-GTTN--------C--CNNNGT-G-A---C---C-----TACC--AANNGTG-T---GTTT--TTT--T--GTCCGAGCGTCA---A--AC---A----TG---GCCNCCA-G-----GA-----T----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACNGACTCGA--T-TT---TAATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGC-CGCCANGG--CC-CCGCCC-A-TNT-----NT-T--A-TTTTG-AAAC-TTAAANCGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAA-TG--TA---CGCTCGTGACCCTCTNCCAAAAGTA-TGGGTTTTT
gi|1 : T---TTA--CATGGGTTTGTA-TA-AGGAAAACGTAAAATA--TT---------TTTCTGCCA-GAAGGC-ACAGATTCAG--T-TT---TAA---A---A-CTTGGTTACA-------ATGTACCGTGTGTGGTGTTCT---TCAAG---------------T--TT--A--A------TGTT--T---TATTAATCA----------TCCAA----ATCAT-CATCTGGG--CC-CTGACC-A-ATT-----CTAG--A-TTTTG-AAAG-TTTAAATGCTATTT----------T--TGAAACTCTCAAACAATTTTCATT---------A--GA-ATT-TT-CTCAGATTG--TCT--CGCTTGAGACCCTCTTCCAAAATTA-TG
gi|1 : TCTTGCAATCGGGC-A-CCAAAGATGGCTGTC-T-TGGCT-CTGCC----G-ATTTAAAAAAATTC-------AAACATTTAGCAA-CATCT--TCT-ATAAAGATTG-A-A-C-------C---ATTGAACTATTG----TAAAA-TTGTTTAAAAAAATC--CTGCAT-G---------------TAA---AACCGTG-T---GTTT---------------GGTGTCG---A--ACAAGA----TG---GCTGCCA-tttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|10 : tttacatgggtttgtataaggaaaacgtaaaatatttttctgccagaaggcacagattcagttttaaaacttggttacaatgtaccgtgtgtggtgttcttcaagtttaatgttttattaatcatccaaatcatcatctgggccctgaccaattctagattttgaaagtttaaatgctatttttgaaactctcaaacaattttcattagaattttctcagattgtctcgcttgagaccctcttccaaaattatgtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgCAGCC-A-TCCATGATTGT-ATCCA-GGACT-CCG-----TT-TATTAGA----TTT--TTCCAATACT---AGCAA-CATCTC-T---GAAACTACTG-A-A-C-TA-TTTT---CTTGAACTTTTAT---TAAAA-T-ATTC--------C--TAAAGT-G-A---C---CGCATGTGCC--AAACGTA-T---GTTttgccaaactagccaaaatgagttatgtgattgcattt
gi|11 : tttatgttgctggTACCCTTTCAG-ACTTTTGTTCGATGTCAGTCGA-TTTAAGATGGCAGCC-A-GGGCC-CCTCC---TA-TTTTTTA---------A---AAAAATGTAGGTGA-AATATC-T-T-CAATTC---G-A-ATCAT--TTTCA--ATTATAGTTTT-C---TTAAT-T-GTTA--------C--CCTAGT-GAA---CCG-C-----TACT--GAAGTTA-T---TTGT--TTA--T--GTTCGAACGTGA---A--ACAAAA----TG---GCCACCATG-----GA-----T----Tatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|12 : AAC-C-ACAGACTCGA--T-TT---TAATAAT---A-CTTGACATCA-------GTGTACTTTAAGTAATAACCTCAATTCAGAAG-------T--ATT--TT-GT--G------TTTT--T--ACGT----------------TCCAACCTGATGGCAAATTTAGA--CC-CCATCC-A--GT-----TT-TAAA-TTTTG-AAAC-TTTAAACGATATCT--C-----TCTAAT--CACT---TAATCATTTTC-TT---------GTTAA-ATTGTTACTggcc
gi|13 : T---TTCAGA---------A--A-T--TC-GGT-A------TT------GATATTGGTCACCCACCCCCTCCCAA---GATGGA-CG-CAAGGATCC-CCGTTC-A-TCT-----TTAT--A-TTTTG--ACC-TTTGAACAACATTT--TTAGAAGCT--T----TT---GAACAATTTTCATT---------C--AA-TGT-TTGTTAAAT-TGA-TATCTTGCTC---ACCCTCTATAAAAAGTG-TGGTTT
gi|15 : TAAAATATTCT---------TTTCT-----GAAT-CTACTGACTCTA--T-TT---TAATAAC---A-AATGACCTAA-------ATGTACTGTGGGTGGTGCCGT---TTCAGACATGGGTGGT--A-T--TTCAG--AATTACCTTTT--TTAAAATTGGTCA----------TCCAA---GACGGC-CACCAGGA--CC-CCACCG-AGTTT-----GT-T--
gi|18 : TC-TCT-GAATGCAATG-A-A-CCAA-TTTT---ATCGAAATTTTGC---TGAAA-G-GTTA--------C--TCAAGT-A-ATATT---C-----TCTC--ATTAGTG-T---TTTT--TTT--T--GTCTCAGCGTCAAACA--AC---A----TG---GACGCCA-GTTCTTGA-----CCAA-TAT-TTTACT---CTATTCATCGGATTTTA-Ttgttt
gi|19 : caTAGG--TTTA-TA-TA----AGGTACATT---CT---------TCTCT--A--AAAC-C-ACTGAA-CAG--T-TT---TAGTAAA---A-CATGGCCTCA-------ATGCACCTTG-----TAC--T---TTCA--------------------T-G----------TTTT--TTGACGTCTGTCA----------TCCAA---GATGGT-CGCCAGGT--CC-CTACCt
gi|2 : ccGGGTGATGCCCCTTCAGAATTTTTTTTTTAAATCAATA-A--CAAAGATGGACATC-A-AAACC-CAGCCCAGTG-TTTCTCA----TTT--T---AAAGCTTTAAATGA-CATTTTGTCT-GAAATCATTG-A-A-CATA-TTTG---ATTGAAATTTTGC---TGAAA-T-GTTT--------C--CTCTGT-G-A---C---C-----TATC--AAATATG-T---GTTT--TTT--T--GTACGAGCTTCA---A--AC---A----TG---GCCTTTA-G-----GA-----T----TAGATT--CT---TTA--CATAGGATTTTA-CA-AC----AGGTAAAAT---CT---------TTTCT--C--AAAT-C-ACCAACTTAA--T-TC---AAATAAA---A-CTTAGTCACA-------ATGTACCTTGGATAGTGTCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCTATGTCGGTCA----------TCCAA---GATGGC-TCCCATGG--CC-TTGCCC-A-TAT-----GT-T--A-TTTTG-AAAC-TTAAATTGACATCT--T----ATCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAA-TGC-TA---TGCTCATGACCCTGTCCAAAAAGTA-TGGGTTTTT
gi|20 : AAAAT---CT---------TTTTG--C---AAC-T-ACTGAATCAAATC-TT---TAA-ACA---A-CATGGTCACA-------ATGTACCTTTGATGATGCCTT---TTAAAG---------TGCA-TTGTT-TA--T------TTTT--TTAAC--TGCTCA----------TCCAA---GTTGGT-CGCCAGGa
gi|21 : -TTTT---ATTGAAATTTTTC---TGAAA-T-GTAA--------C--TGTTGT-G-A---CCCTC-----TACT--AAAATTC-T---TTAT--TTT--TGAGTCTGGGCATCA---G--ACAAGA----TG---GCCAC
gi|22 : acCA----------TCCAA---TATAGC-CACCAAGA--CC-CCGTTC-A-TTT-----AT-TTGA-TTTTG-AACC-T--------CCTCTGTC----A-CT------ACT---GAACCATTTTCATT---------G--AATATT-TCACt
gi|23 : gaTTAGA----TTTGGT---AAA--TTCAAATAA-CATCTT-T---GAAACTGTTG-A-AACAC--TTTC---ATTGCAA-TTTGC---TTAAC-T-GTTT--------C--CCTGGTAA-A---C---C-----T
gi|24 : C-CAGCC-AGT---TTCTTA----TTT--G---AAAAATTTAAACGA-CATGTCATCT-GAAAACACTG-A-A-CTTA-TTTT---ATTGtct
gi|25 : atagaaaAA---A-ATTGGCCACA-------TTGTCTTTTGAATAGTGTCCT---TTCAGA---------T----T--TT-AG--T------TTTT--TC
gi|26 : ACAAA---A-TTTGGCTACA-------ATGTAACTTGGGCGATGCCCT---TTCA
gi|3 : TGAGGTTGGCC-A-TCTAAGATTTCTGAC-A-ACGCC-CTGCC-AA-G-TTTTT-A----TTT--C---AAAACTTTAAACAA-TATCTC-T---GAAACCA------A-CATA-TTTC---TGTGGAATTTTGC---TGAAA-T-GTTA--------C---------------T---C-----TACCGAAATTGTGTT---GTTT--TTTTCT--GTCCGAGTGCGA---A--GC---AAGATTGCATGCCGCCA-------AATGTTTT----TAT-TC-------TTA--CATAGGATTTTACT---T----GGGGACGAT---CT---------TTTCT---------------GACTCAA--T-TTTGATAATAAA---A-CTTTGCTACA-------ATGTACCTTGGACAATGCCCT---GTCA--------------------------A------TTTT--TTTACATTGGCCA----------GTCAA---AATGGC-ATTGAGGA--CCACCGCCTGA-TTT-----TA-G--A-TTTTGAAAAT-TTTAAGTGACATCT--T----AGA------AACTA--GAAACATTTTCAGT---------G--GA-ATT-TT-CTGAGA-T
gi|3 : GGACAATGCCCTGTCA--A---TTTTTTTACATTGGCC-AGTCAAA-ATGG-CATT-GAGGACCACCGCC---TGATTTTAGA----TTT--TG--AAAATTTTAAGTGA-CATCT----TAGAAACTA--GAA-A-CAT--TTTC---AGTGGAATTTT-C---TGAGATT-ATTT--------C--CTTGAT-G-A---T---C-----C----------TG--------T--TTT--A--ATCCGAGTGTCA---G--ACAAGA----TG---GCTGCCA-A-----Gtatttccttgatgatcctgttttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|3 : tgaggttggccatctaagatttctgacaacgccctgccaagtttttatttcaaaactttaaacaatatctctgaaaccaacatatttctgtggaattttgctgaaatgttactctaccgaaattgtgttgtttttttctgtccgagtgcgaagcaagattgcatgccgccaaatgtttttattcttacataggattttacttggggacgatcttttctgactcaattttgataataaaactttgctacaatgtaccttGTCA----------GACAA---GATGGC-TGCCAAGG--CT-CTGgctctgttactcttaaca
gi|4 : tgaggttggccatctaagatttctgacaacgccctgccaagtttttatttcaaaactttaaacaatatctctgaaaccaacatatttctgtggaattttgctgaaatgttactctaccgaaattgtgttgtttttttctgtccgagtgcgaagcaagattgcatgccgccaaatgtttttattcttacataggattttacttggggacgatcttttctgactcaattttgataataaaactttgctacaatgtaccttggacaatgccctgtcaatttttttacattggccagtcaaaatggcattgaggaccaccgcctgattttagattttgaaaattttaagtgacatcttagaaactagaaacattttcagtggaattttctgagattatttccttgatgatcctgttttaatccgagtGTC-A-TCCAAAATTGCAGTT-G-GAGCC-CTGCC-CA-G-TTTTAGA----TTT--T---GAAAGTTTAAAAAAACATCTC------GAACTGTTG-A-A--TTA-TTTTTAGATTG---TTTCACTTGTGAGC-C-TTTA--------CTACCGAAT-G-G---C---C------ACC--AGGGCTC-T---GTTG--TTT--T--ttactcttaaca
gi|5 : TTTTGTTTTACATATGTC-A-TCCAAAATGGCGGTT-G-G---------C-AAT---TTTATA----TTT--T---GAAAATAAAAATGA-CATC---TCT-GAAACTATTG-ATA-AAT--TTTC---TTCAAACTTTTAT---TATTT-T-GCTT--------C--CCTGGT-------T---C-----TAC----ATTGTG-T----TTG--TTT--T--GTCT--ACGT------------------TT---GCCATCA-G-----GC-----TCCGCTAT------T---TTA--CATA-GATTaacatatgctaatatagaaataagtttactcttctcttaaacgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|6 : TAACAT---CT------------CT--G--AAAT-C-ACATACTCAA--TGTT---TAATAAA---AACTTGTGCACA-------ATGTATTTTGGATGATGCCCT---TTC-----------------------------------TTT--TTGAGGTCAGTCA----------TCAAA---GGTTGC-CGTCTGGG--CC-C--CCA-A---------GG-T--A-TTTC----AT-TTAAAAT-ACATCT--C----TGATG-C--CACT---GAAGTAGTTTCATT---------G--AA---T-TTGCTGAAA-TG--TA------TAGTGACCCTCTACCGAGGGTGTTTGGTTTTaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|6 : GGATGATGCCCTTTC--------TTTTTGAGGTCAGTC-A-TCAAAGGTTGCCGTC-T-GGGCC-C--CC-AAGG-TATTTCA-----TT--T---AAAAT--------A-CA--TC-TCT-GATGCCACTG-A-A--GTAGTTTC---ATTGAA--TTTGC---TGAAA-T-GT--------------ATAGT-G-A---CCCTC-----TACC--GAGGGTG-TTTGGTTTTATTT--T--GTCAAA----CA---A--A----A----TG---GCCACCT-T-----GA------------------CT---TTG--C-CA--ATTTTG-T--AC----AGGGAAGAT---CT---------TT--------GAA----ACC-ACTCAA--T-TT---TATTAAA---A-CTTAGCCCCA-------Aattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|7 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttTTTTGA---TGAAT-T-ATTA--------C--CTTAGT-A-A---C---CGTC--TACT--AAAATTG-T---GTTT--TTTG-T--GTGCGAGCATCA---ACAAG---A----TG---GCCACCA-A-----GG-----T----TTT-GC--CTATTTTG--CGTAGG--TTTA-TATAG----AGA-AAACT---CTGCAATATTGTTTCC--CTGAAAC-C-ACTGACTCTA--T-TT---TAGTAAATTAA-CTTAACCACACATATAAATGTACCTCAGGCTGTGCCTT---TTAAAA------------A-T--T--GGCTG------TTTTAATCGATATCGATCA----------TCCAA---GATGGC-TGGC--TG--CC-CAG-TT-A-TTT-----TT-T--A-TTTTG-CAAC-TTTAATAGACgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|8 : ttcaatttactttgctatgg----------TCCAA---GATGGC-TGCCATGA--CC-TTGTCC-A-TTTTAAGAAT-T--GTTTTTC-AAACATTAAGCAGA-ATAT--T----TTCT------ATT---GAACTATTTTTATCTACTATTAAG--AA-ATTGTTTCTTAAG-TGACTG---CGCTTGT----------CAAAATTA-T--GTTTTT
gi|9 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatatTAGA----TAT--T---GAAAATTTAAATGG-CATCAC-T---GGAACTGTTC-A-A-CCAT-TTTC---ATTGACCTTTT-----TAGAT-T-GTTT--------C--CTAGGT-G-A---C---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT
Alignments
lowQualScore : 22222 22222 11111 1111 222222 2222222222222222222222222222222222222 1111 11 111 2222222 7777777777777777777777777777 22222222 111 33333333333333333333 1111111 888888888888888888888888888888888 11 1111111111 22222222222 66666666666666666 111 222222222222 1 1 2222222222222
lowQualScore : 6 11111 0 7 2 5 1 2 6 444 9 22222 11111 8888 2 1 3 0 2222 0 1 3 3 555555 888 0 6 88888 55 4444444444444444444444444444444444444 3 222 1111 4 11 000 1 0 3333333 777 1 4444444444444444444444444444 77 0 2 6 5 88888888 3 222 22222222222222222222 9999 6 55 4 777 1 555 3 0000000 22 555 111111111111111111111111111111111 55 11 44 3 3333333333 555 44 0 55 3 0 0 4 44 22222222222 4 99 66 88888888888888888 333 0 222222222222 55 0 0 1 6 1111111111111 3 8 5
lowQualScore : . ..... . . . . . . . ... . ..... ..... .... . . . . .... . . . . ...... ... . . ..... .. ..................................... . ... .... . .. ... . . ....... ... . ............................ .. . . . . ........ . ... .................... .... . .. . ... . ... . ....... .. ... ................................. .. .. .. . .......... ... .. . .. . . . . .. ........... . .. .. ................. ... . ............ .. . . . . ............. . . .
lowQualScore : 0 77777 6 8 7 0 0 5 5 888 2 77777 00000 0000 3 8 6 5 9999 8 0 3 3 111111 555 5 3 88888 88 7777777777777777777777777777777777777 5 555 4444 0 00 444 1 8 6666666 888 7 1111111111111111111111111111 99 1 5 5 7 55555555 1 222 88888888888888888888 4444 4 55 0 000 3 888 3 8888888 88 888 999999999999999999999999999999999 00 88 44 0 5555555555 444 22 2 55 3 8 4 0 99 99999999999 4 00 22 55555555555555555 888 2 000000000000 44 0 2 0 7 8888888888888 8 0 0
consensus : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTT---ANATTTC---GAAAATTTAAACGA-CATCTC-TCTGAAACCGTT-GA-A-CATA-TTTC---ATTGAANTTTTGC---TGAAN-TGTT--------NC--C--CNAGT-G-A---C---C-----TACCAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
Reference ( family-2529 ) : GGACGATGCCCTTTCAGA-CTTTTTTTTGACGTCGGTC-ATCNAAGATGGCCGTCGGGGCCCCGCC-AATGTTTT---ANATTTT---AAAANTTTAAACGA-CATCTC-TCTGAAACCATT-GA-A-CATA-TTTC---ATTGAAATTTTGC---TGAAA-TGTT--------NC--C--CNNGT-G-A---C---C-----TACCAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGG-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAANCGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATATC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
gi|1 : T---TTA--CATGGGTTTGTA-TA-AGGAAAACGTAAAATA--TT---------TTTCTGCCA-GAAGGC-ACAGATTCAG--T-TTT---AA---A---A-CTTGGTTACA-------ATGTACCGTGTGTGGTGTTCT---TCAAG---------------T--TT--A--A------TGTT--T---TATTAATCA----------TCCAA----ATCATCA--TCTGGG-CC-CTGACC-A-ATT-----CTAG--A-TTTTG-AAAGTTTAAATGCTATTT----------T--TGAAACTCTCAAACAATTTTCATT---------A--GA-ATT-TT-CTCAGATT-GTCTC--GCTTG-AGACCCTCTTCCAAAATTA-TG
gi|1 : TCGGGC-ACCAAAGATGGCTGTCTTGGCTCTGCC-GA---TTTAAAAAAATTC---AAACATTT-AGCAA-CATCT--TCTATAAAGATT-GA-A-C-------C---ATTGAACTATTG----TAAAATTGTTTAAAAAAATC--CTGCATGT-A-A-----------------AACCGTGT---GTTT------------GGTGTCGAAC-AAGA--TG---GCTGCCA-tttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|10 : tttacatgggtttgtataaggaaaacgtaaaatatttttctgccagaaggcacagattcagttttaaaacttggttacaatgtaccgtgtgtggtgttcttcaagtttaatgttttattaatcatccaaatcatcatctgggccctgaccaattctagattttgaaagtttaaatgctatttttgaaactctcaaacaattttcattagaattttctcagattgtctcgcttgagaccctcttccaaaattatgtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaaTTTATGTTGCTGGCAGCC-ATCCATGATTGTATCCAGGACTCCG-----TTTATT---AGATTTTTCCAATACT---AGCAA-CATCTC-T--GAAACTACT-GA-A-C-TA-TTTT---CTTGAACTTTTAT---TAAAA-TATT--------CC--T--AAAGT-G-A---C---CGCATGTGCCAAACGTAT---GTTttgccaaactagccaaaatgagttatgtgattgcattt
gi|11 : TACCCTTTCAGA-CTTTTGTTCGATGTCAGTCGATTTAAGATGGCAGCCAGGGCCCCTCC-TATTTTTT---AA--------AAAAATGTAGGTGA-AATATC-TT-----CAATTCGA-ATCAT--TTTCA--ATTATAGTTTT-C---TTAAT-TGTT--------AC--C--CTAGT-GAA---CCG-C-----TACTGAAGTTAT---TTGTTTA-T--GTTCGAACGTGAAACAAA-A--TG---GCCACCATG-----GAT-----Tatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|12 : AAC-C-ACAGACTCGA--T-TTT---AATAAT---A-CTTGACATCA-------GTGTACTTTAAGTAATAACCTCAATTCAGAAG-------T--ATT--TT-GT--G------TTTT--T--ACGT----------------TCCAACCTGATGGCAAATTTA-GA-CC-CCATCC-A-GTT-----TTAA--A-TTTTG-AAACTTTAAACGATATCT--C-----TCTAAT--CACT---TAATCATTTTC-TT---------GTTAA-ATTGTTACTggcc
gi|13 : T---TTCAGA---------A--A-T--TC-GGT-A------TT------GATATTGGTCACCCACCCCCTCCCAA---GATGGACG--CAAGGATCC-CCGTTC-A-TCT-----TTAT--A-TTTTG--ACCTTTGAACAACATTT--TTAGAAGCT--T----TT---GAACAATTTTCATT---------C--AA-TGT-TTGTTAAATTG-ATATCTTGCTC----ACCCTCTATAAAAAGTG-TGGTTT
gi|15 : TAAAATATTCT---------TTTCT-----GAAT-CTACTGACTCTA--T-TTT---AATAAC---A-AATGACCTAA-------ATGTACTGTGGGTGGTGCCGT---TTCAGACATGGGTGGT--A-T--TTCAG--AATTACCTTTT--TTAAAATTGGTCA----------TCCAA---GACGGCCA--CCAGGA-CC-CCACCG-AGTTT-----GT-T--
gi|18 : TC-TCTGAATGCAAT-GA-A-CCAA-TTTT---ATCGAAATTTTGC---TGAAA-GGTT--------AC--T--CAAGT-A-ATATT---C-----TCTCATTAGTGT---TTTTTTT-T--GTCTCAGCGTCAAAC-AACA--TG---GACGCCA-GTTCTTGACCAA--TAT-TTTACT---CTATTCATCGGATTTTA-Ttgttt
gi|19 : caTAGG--TTTA-TA-TA----AGGTACATT---CT---------TCTCT--A--AAAC-C-ACTGAA-CAG--T-TTT---AGTAAA---A-CATGGCCTCA-------ATGCACCTTG-----TAC--T---TTCA--------------------T-G----------TTTT--TTGACGTCTGTCA----------TCCAA---GATGGTCG--CCAGGT-CC-CTACCt
gi|2 : ccGGGTGATGCCCCTTCAGAATTTTTTTTTTAAATCAATA-A-CAAAGATGGACATCAAAACCCAGCCCAGTGTTTC---TCATTTT---AAAGCTTTAAATGA-CATTTTGTCTGAAATCATT-GA-A-CATA-TTTG---ATTGAAATTTTGC---TGAAA-TGTT--------TC--C--TCTGT-G-A---C---C-----TATCAAATATGT---GTTTTTT-T--GTACGAGCTTCAAAC-A-----TG---GCCTTTA-G-----GAT-----TAGATT--CT---TTA--CATAGGATTTTA-CA-AC----AGGTAAAAT---CT---------TTTCT--C--AAAT-C-ACCAACTTAA--T-TCA---AATAAA---A-CTTAGTCACA-------ATGTACCTTGGATAGTGTCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCTATGTCGGTCA----------TCCAA---GATGGCTC--CCATGG-CC-TTGCCC-A-TAT-----GT-T--A-TTTTG-AAACTTAAATTGACATCT--T----ATCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-CTAT---GCTCA-TGACCCTGTCCAAAAAGTA-TGGGTTTTT
gi|20 : AAAAT---CT---------TTTTG--C---AAC-T-ACTGAATCAAATC-TTT---AA-ACA---A-CATGGTCACA-------ATGTACCTTTGATGATGCCTT---TTAAAG---------TGCA-TTGTT-TA--T------TTTT--TTAAC--TGCTCA----------TCCAA---GTTGGTCG--CCAGGa
gi|21 : -TTTT---ATTGAAATTTTTC---TGAAA-TGTA--------AC--T--GTTGT-G-A---CCCTC-----TACTAAAATTCT---TTATTTT-TGAGTCTGGGCATCAGAC-AAGA--TG---GCCAC
gi|22 : acCA----------TCCAA---TATAGCCA--CCAAGA-CC-CCGTTC-A-TTT-----AT-TTGA-TTTTG-AACCT--------CCTCTGTC----A-CT------ACT---GAACCATTTTCATT---------G--AATATT-TCACt
gi|23 : gaTT---AGATTTG---GTAAATTCAAATAA-CATCTT-T--GAAACTGTT-GA-AACAC--TTTC---ATTGCAA-TTTGC---TTAAC-TGTT--------TC--C--CTGGTAA-A---C---C-----T
gi|24 : CCAGCC-A--GTTTC---TTATTTG---AAAAATTTAAACGA-CATGTCATCTGAAAACACT-GA-A-CTTA-TTTT---ATTGtct
gi|25 : atagaaaAA---A-ATTGGCCACA-------TTGTCTTTTGAATAGTGTCCT---TTCAGA---------T----T--TT-AG--T------TTTT--TC
gi|26 : ACAAA---A-TTTGGCTACA-------ATGTAACTTGGGCGATGCCCT---TTCA
gi|3 : TGAGGTTGGCC-ATCTAAGATTTCTGACAACGCCCTGCC-AA-GTTTT----TATTTC---AAAACTTTAAACAA-TATCTC-T--GAAACCA------A-CATA-TTTC---TGTGGAATTTTGC---TGAAA-TGTT--------AC--T--CT------A---C---C-----GA--AATTGTGTT--GTTTTTT-TCTGTCCGAGTGCGAAGC-AA-GATTGCATGCCGCCA-A------ATGTTTTTAT-TC-------TTA--CATAGGATTTTACT---T----GGGGACGAT---CT---------TTTCT---------------GACTCAA--T-TTTGATAATAAA---A-CTTTGCTACA-------ATGTACCTTGGACAATGCCCT---GTCA--------------------------A------TTTT--TTTACATTGGCCA----------GTCAA---AATGGCAT--TGAGGA-CCACCGCCTGA-TTT-----TA-G--A-TTTTGAAAATTTTAAGTGACATCT--T----AGA------AACTA--GAAACATTTTCAGT---------G--GA-ATT-TT-CTGAGATT-ATTTC---CTTGATGATCCT
gi|3 : GTCA----------GACAA---GATGGCTG--CCAAGG-CT-CTGgttttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|4 : tgaggttggccatctaagatttctgacaacgccctgccaagtttttatttcaaaactttaaacaatatctctgaaaccaacatatttctgtggaattttgctgaaatgttactctaccgaaattgtgttgtttttttctgtccgagtgcgaagcaagattgcatgccgccaaatgtttttattcttacataggattttacttggggacgatcttttctgactcaattttgataataaaactttgctacaatgtaccttggacaatgccctgtcaatttttttacattggccagtcaaaatggcattgaggaccaccgcctgattttagattttgaaaattttaagtgacatcttagaaactagaaacattttcagtggaattttctgagattatttccttgatgatcctgttttaatccgagtGTC-ATCCAAAATTGCAGTTGGAGCCCTGCC-CA-GTTTT---AGATTTT---GAAAGTTTAAAAAAACATCTC-----GAACTGTT-GA-A-T-TA-TTTTTAGATTG---TTTCACTTGTGAGC-CTTT--------ACTAC--CGAAT-G-G---C---C------ACCAGGGCTCT---GTTGTTT-T--ttactcttaaca
gi|5 : TTTTGTTTTACATATGTC-ATCCAAAATGGCGGTTGG--------C-AAT--TTT---ATATTTT---GAAAATAAAAATGA-CATC---TCTGAAACTATT-GATA-AAT--TTTC---TTCAAACTTTTAT---TATTT-TGCT--------TC--C--CTGGT-------T---C-----TAC--ATTGTGT----TTGTTT-T--GTCT--ACGT------------TT---GCCATCA-G-----GCTCCGC-TAT------T---TTA--CATA-GATTaacatatgctaatatagaaataagtttactcttctcttaaacgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|6 : TAACAT---CT------------CT--G--AAAT-C-ACATACTCAA--TGTTT---AATAAA---AACTTGTGCACA-------ATGTATTTTGGATGATGCCCT---TTC-----------------------------------TTT--TTGAGGTCAGTCA----------TCAAA---GGTTGCCG--TCTGGG-CC-C--CCA-A---------GG-T--A-TTTCA-----TTTAAAATACATCT--C----TGATG-C--CACT---GAAGTAGTTTCATT---------G--AA---T-TTGCTGAAATGTATA--------G-TGACCCTCTACCGAGGGTGTTTGGTTTTaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|6 : GGATGATGCCCTTTC--------TTTTTGAGGTCAGTC-ATCAAAGGTTGCCGTCTGGGCCC--CC-AAGGT--------ATTTC---A----TTTAAAATA-CA--TC-TCTGATGCCACT-GA-A--GTAGTTTC---ATTGAA--TTTGC---TGAAA-TGT----------------ATAGT-G-A---CCCTC-----TACCGAGGGTGTTTGGTTTTAT-T--TT------GTCAAACAAA-A--TG---GCCACCT-T-----GA--------------CT---TTG--C-CA--ATTTTG-T--AC----AGGGAAGAT---CT---------TT--------GAA----ACC-ACTCAA--T-TTT---ATTAAA---A-CTTAGCCCCA-------Aattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|7 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttTTTTGA---TGAAT-TATT--------AC--C--TTAGT-A-A---C---CGTC--TACTAAAATTGT---GTTTTTTGT--GTGCGAGCATCAA-C-AAGA--TG---GCCACCA-A-----GGT-----TTT-GC--CTATTTTG--CGTAGG--TTTA-TATAG----AGA-AAACT---CTGCAATATTGTTTCC--CTGAAAC-C-ACTGACTCTA--T-TTT---AGTAAATTAA-CTTAACCACACATATAAATGTACCTCAGGCTGTGCCTT---TTAAAA------------A-T--T--GGCTG------TTTTAATCGATATCGATCA----------TCCAA---GATGGCTG--GCTG----C-CCAGTT-A-TTT-----TT-T--A-TTTTG-CAACTTTAATAGACgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|8 : ttcaatttactttgctatgg----------TCCAA---GATGGCTG--CCATGA-CC-TTGTCC-A-TTTTAAGAAT-T--GTTTTTC-AAACATTAAGCAGAATAT--T----TTCT------ATT---GAACTATTTTTATCTACTATTAAG--AA-ATTGTTTCTTAAGTG-ACTGC--GCTTG-T----------CAAAATTA-T--GTTTTT
gi|9 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatatT---AGATATT---GAAAATTTAAATGG-CA--TC-ACTGGAACTGTT-CA-ACCAT--TTTC---ATTGACCTTTT-----TAGAT-TGTT--------TC--C--TAGGT-G-A---C---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT
Alignments
lowQualScore : 22222 22222 1111 222222 3333333333333333333333 1111 11 111 2222222 7777777777777777777777777777 22222222 111 33333333333333333333 1111111 888888888888888888888888888888888 1111111111 22222222222 66666666666666666 111 222222222222 1 1 1111111111111
lowQualScore : 11111 1 2 5 1 1 1 444 9 00000 2 44 666 2222 3 1 5 777 88 3 3 111111 888 0 5 66666 1 2 55555 444 0000000000000000000000 222 1111 4 11 000 1 0 3333333 777 1 4444444444444444444444444444 77 0 2 6 5 88888888 3 222 22222222222222222222 9999 6 55 4 777 1 555 3 0000000 22 555 111111111111111111111111111111111 55 99999 3 4444444444 555 44 3 3 0 0 4 44 22222222222 4 99 333 88888888888888888 333 0 222222222222 55 0 0 1 6 9999999999999 3 8 5
lowQualScore : ..... . . . . . . ... . ..... . .. ... .... . . . ... .. . . ...... ... . . ..... . . ..... ... ...................... ... .... . .. ... . . ....... ... . ............................ .. . . . . ........ . ... .................... .... . .. . ... . ... . ....... .. ... ................................. .. ..... . .......... ... .. . . . . . .. ........... . .. ... ................. ... . ............ .. . . . . ............. . . .
lowQualScore : 77777 0 7 0 0 0 0 888 2 00000 0 66 444 5555 6 8 1 000 55 3 3 777777 555 5 4 22222 0 1 44444 999 1111111111111111111111 555 4444 0 00 444 1 8 6666666 888 7 1111111111111111111111111111 99 1 5 5 7 55555555 1 222 88888888888888888888 4444 4 55 0 000 3 888 3 8888888 88 888 999999999999999999999999999999999 00 99999 0 6666666666 888 66 6 6 4 4 0 99 99999999999 4 00 555 55555555555555555 888 2 000000000000 44 0 2 0 7 2222222222222 8 0 0
consensus : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-A-CATA-TTTC---ATTGAANTTTTGC---TGAANTGTTNC--CCNAGT-G-A---C---C-----TAC-----CAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
Reference ( family-2529 ) : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-A-CATA-TTTC---ATTGAANTTTTGC---TGAANTGTTNC--CCNAGT-G-A---C---C-----TAC-----CAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
gi|1 : T---TTA--CATGGGTTTGTA-TA-AGGAAAACGTAAAATA--TT---------TTTCTGCCA-GAAGGC-ACAGATTCAG--T-TTT---AA---A---A-CTTGGTTACA-------ATGTACCGTGTGTGGTGTTCT---TCAAG---------------T--TT-A---A------TGTT--TTA---TTAATCA----------TCCAA----ATCATCA--TCTGGG-CC-CTGACC-A-ATT-----CTAG--A-TTTTG-AAAGTTTAAATGCTATTT----------T--TGAAACTCTCAAACAATTTTCATT---------A--GA-ATT-TT-CTCAGATT-GTCTC--GCTTG-AGACCCTCTTCCAAAATTA-TG
gi|1 : TCTTGCAATCGGGC-ACCAAAGATGGCTGTCTTGGCTCTGCC-GAT---TTAAAAAAATT--CAAACATTT-AG-CAACATCT--TCTATAAAGATTG-A-A-C-------C---ATTGAACTATTGT---AAAATTGTTT-----AAAA-A-AAT-C---C-----TGCATGTAAAACCGTGT---GTTT------------GGTGTCGAAC-AAGA--TG---GCTGCCA-tttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|10 : tttacatgggtttgtataaggaaaacgtaaaatatttttctgccagaaggcacagattcagttttaaaacttggttacaatgtaccgtgtgtggtgttcttcaagtttaatgttttattaatcatccaaatcatcatctgggccctgaccaattctagattttgaaagtttaaatgctatttttgaaactctcaaacaattttcattagaattttctcagattgtctcgcttgagaccctcttccaaaattatgtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgTTTATGTTGCTGGCAGCC-ATCCATGATTGTATCCAGGACTCCG-----TTTATTAGAT---TTTTCCAATACT---AGCAACATCTC-T--GAAACTACTG-A-A-C-TA-TTTT---CTTGAACTTTTAT---TAAAATATTCC--TAAAGT-G-A---C---CGCATGTGC-----CAAACGTAT---GTTttgccaaactagccaaaatgagttatgtgattgcattt
gi|11 : TACCCTTTCAGA-CTTTTGTTCGATGTCAGTCGATTTAAGATGGCAGCCAGGGCCCCTCC-TATTTTTTAAA----------AAAATGT-AGGTGAAATATC-TTC--AAT--TCG-A-ATCAT--TTTCA--ATTATAGTTTT-C---TTAATTGTTAC--CCTAGT-GAA---CCG-C-----TAC-----TGAAGTTAT---TTGTTTA-T--GTTCGAACGTGAAACAAA-A--TG---GCCACCATG-----GAT-----Tatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|12 : AAC-C-ACAGACTCGA--T-TTT---AATAAT---A-CTTGACATCA-------GTGTACTTTAAGTAATAACCTCAATTCAGAAG-------T--ATT--TT-GT--G------TTTT--T--ACGT----------------TCCAACCTGATGGCAAATTTA-GA-CC-CCATCC-A-GTT-----TTAA--A-TTTTG-AAACTTTAAACGATATCT--C-----TCTAAT--CACT---TAATCATTTTC-TT---------GTTAA-ATTGTTACTggcc
gi|13 : T---TTCAGA---------A--A-T--TC-GGT-A------TT------GATATTGGTCACCCACCCCCTCCCAA---GATGGACG--CAAGGATCC-CCGTTC-A-TCT-----TTAT--A-TTTTG--ACCTTTGAACAACATTT--TTAGAAGCT--T----TT---GAACAATTTTCATT---------C--AA-TGT-TTGTTAAATTG-ATATCTTGCTC----ACCCTCTATAAAAAGTG-TGGTTT
gi|15 : TAAAATATTCT---------TTTCT-----GAAT-CTACTGACTCTA--T-TTT---AATAAC---A-AATGACCTAA-------ATGTACTGTGGGTGGTGCCGT---TTCAGACATGGGTGGT--A-T--TTCAG--AATTACCTTTT--TTAAAATTGGTCA----------TCCAA---GACGGCCA--CCAGGA-CC-CCACCG-AGTTT-----GT-T--
gi|18 : TC-TCTGAATGCAATG-A-A-CCAA-TTTT---ATCGAAATTTTGC---TGAAAGGTTAC--TCAAGT-A-ATATT---C-----TCT-----CATTAGTGT---TTTTTTT-T--GTCTCAGCGTCAAAC-AACA--TG---GACGCCA-GTTCTTGACCAA--TAT-TTTACT---CTATTCATCGGATTTTA-Ttgttt
gi|19 : caTAGG--TTTA-TA-TA----AGGTACATT---CT---------TCTCT--A--AAAC-C-ACTGAA-CAG--T-TTT---AGTAAA---A-CATGGCCTCA-------ATGCACCTTG-----TAC--T---TTCA--------------------T-G----------TTTT--TTGACGTCTGTCA----------TCCAA---GATGGTCG--CCAGGT-CC-CTACCt
gi|2 : ccGGGTGATGCCCCTTCAGAATTTTTTTTTTAAATCAATA-A-CAAAGATGGACATCAAAACCCAGCCCAGTGTTTCTCAT---TT--TAAAGCTTT-AAATGACATTTTGTCTGAAATCATTG-A-A-CATA-TTTG---ATTGAAATTTTGC---TGAAATGTTTC--CTCTGT-G-A---C---C-----TAT-----CAAATATGT---GTTTTTT-T--GTACGAGCTTCAAAC-A-----TG---GCCTTTA-G-----GAT-----TAGATT--CT---TTA--CATAGGATTTTA-CA-AC----AGGTAAAAT---CT---------TTTCT--C--AAAT-C-ACCAACTTAA--T-TCA---AATAAA---A-CTTAGTCACA-------ATGTACCTTGGATAGTGTCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCTATGTCGGTCA----------TCCAA---GATGGCTC--CCATGG-CC-TTGCCC-A-TAT-----GT-T--A-TTTTG-AAACTTAAATTGACATCT--T----ATCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-CTAT---GCTCA-TGACCCTGTCCAAAAAGTA-TGGGTTTTT
gi|20 : AAAAT---CT---------TTTTG--C---AAC-T-ACTGAATCAAATC-TTT---AA-ACA---A-CATGGTCACA-------ATGTACCTTTGATGATGCCTT---TTAAAG---------TGCA-TTGTT-TA--T------TTTT--TTAAC--TGCTCA----------TCCAA---GTTGGTCG--CCAGGa
gi|21 : -TTTT---ATTGAAATTTTTC---TGAAATGTAAC--TGTTGT-G-A---CCCTC-----TAC-----TAAAATTCT---TTATTTT-TGAGTCTGGGCATCAGAC-AAGA--TG---GCCAC
gi|22 : acCA----------TCCAA---TATAGCCA--CCAAGA-CC-CCGTTC-A-TTT-----AT-TTGA-TTTTG-AACCT--------CCTCTGTC----A-CT------ACT---GAACCATTTTCATT---------G--AATATT-TCACt
gi|23 : gaTTAGAT---TT--GGTAAATTC-AAATAACAT--C-TTTGAAACTGTTGAA-A-CAC--TTTC---ATTGCAA-TTTGC---TTAACTGTTTC--CCTGGTAA-A---C---C-----T
gi|24 : CCAGCC-A--GTTTCTTAT---TT--GAAAAATTT-AAACGACATGTCATCTGAAAACACTG-A-A-CTTA-TTTT---ATTGtct
gi|25 : atagaaaAA---A-ATTGGCCACA-------TTGTCTTTTGAATAGTGTCCT---TTCAGA---------T----T--TT-AG--T------TTTT--TC
gi|26 : ACAAA---A-TTTGGCTACA-------ATGTAACTTGGGCGATGCCCT---TTCA
gi|3 : TGAGGTTGGCC-ATCTAAGATTTCTGACAACGCCCTGCC-AA-GTTTT-TAT---TT--CAAAACTTT-AAACAATATCTC-T--GAAACC-----A-A-CATA-TTTC---TGTGGAATTTTGC---TGAAATGTTAC--TCTACC-G-A----------------------AATTGTGTT--GTTTTTT-TCTGTCCGAGTGCGAAGC-AA-GATTGCATGCCGCCA-A------ATGTTTTTAT-TC-------TTA--CATAGGATTTTACT---T----GGGGACGAT---CT---------TTTCT---------------GACTCAA--T-TTTGATAATAAA---A-CTTTGCTACA-------ATGTACCTTGGACAATGCCCT---GTCA--------------------------A------TTTT--TTTACATTGGCCA----------GTCAA---AATGGCAT--TGAGGA-CCACCGCCTGA-TTT-----TA-G--A-TTTTGAAAATTTTAAGTGACATCT--T----AGA------AACTA--GAAACATTTTCAGT---------G--GA-ATT-TT-CTGAGATT-ATTTC---CTTGATGATCCT
gi|4 : GTC-ATCCAAAATTGCAGTTGGAGCCCTGCC-CA-GTTTTAGAT---TT--TGAAAGTTTAAAAAAACATCTC-----GAACTGTTG-A-A-T-TA-TTTTTAGATTG---TTTCACTTGTGAGCCTTTACTACCGAAT-G-G---C---C------AC-----CAGGGCTCT---GTTGTTT-T--gttttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|5 : TTTTGTTTTACATATGTC-ATCCAAAATGGCGGTTGG--------C-AAT--TTTATAT---TT--TGAAAATAA-AAATGACATC---TCTGAAACTATTG-ATA-AAT--TTTC---TTCAAACTTTTAT---TATTTTGCTTC--CCTGGT-------T---C-----TAC-------ATTGTGT----TTGTTT-T--GTCT--ACGT------------TT---GCCATCA-G-----GCTCCGC-TAT------T---TTA--CATA-GATTaacatatgctaatatagaaataagtttactcttctcttaaacgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|6 : TAACAT---CT------------CT--G--AAAT-C-ACATACTCAA--TGTTT---AATAAA---AACTTGTGCACA-------ATGTATTTTGGATGATGCCCT---TTC-----------------------------------TTT--TTGAGGTCAGTCA----------TCAAA---GGTTGCCG--TCTGGG-CC-C--CCA-A---------GG-T--A-TTTCA-----TTTAAAATACATCT--C----TGATG-C--CACT---GAAGTAGTTTCATT---------G--AA---T-TTGCTGAAATGTATA--------G-TGACCCTCTACCGAGGGTGTTTGGTTTTaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|6 : GGATGATGCCCTTTC--------TTTTTGAGGTCAGTC-ATCAAAGGTTGCCGTCTGGGCCC--CC-AAGGT-----AT---TT--C----ATTT-AAAATACA--TC-TCTGATGCCACTG-A-A--GTAGTTTC---ATTGAA--TTTGC---TGAAATGT------ATAGT-G-A---CCCTC-----TAC-----CGAGGGTGTTTGGTTTTAT-T--TT------GTCAAACAAA-A--TG---GCCACCT-T-----GA--------------CT---TTG--C-CA--ATTTTG-T--AC----AGGGAAGAT---CT---------TT--------GAA----ACC-ACTCAA--T-TTT---ATTAAA---A-CTTAGCCCCA-------Aattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|7 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttTTTTGA---TGAATTATTAC--CTTAGT-A-A---C---CGTC--TAC-----TAAAATTGT---GTTTTTTGT--GTGCGAGCATCAA-C-AAGA--TG---GCCACCA-A-----GGT-----TTT-GC--CTATTTTG--CGTAGG--TTTA-TATAG----AGA-AAACT---CTGCAATATTGTTTCC--CTGAAAC-C-ACTGACTCTA--T-TTT---AGTAAATTAA-CTTAACCACACATATAAATGTACCTCAGGCTGTGCCTT---TTAAAA------------A-T--T--GGCTG------TTTTAATCGATATCGATCA----------TCCAA---GATGGCTG--GCTG----C-CCAGTT-A-TTT-----TT-T--A-TTTTG-CAACTTTAAgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|8 : ttcaatttactttgctatgg----------TCCAA---GATGGCTG--CCATGA-CC-TTGTCC-A-TTTTAAGAAT-T--GTTTTTC-AAACATTAAGCAGAATAT--T----TTCT------ATT---GAACTATTTTTATCTACTATTAAG--AA-ATTGTTTCTTAAGTG-ACTGC--GCTTG-T----------CAAAATTA-T--GTTTTTtagac
gi|9 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatatTAGAT---AT--TGAAAATTT-AAATGGCA--TC-ACTGGAACTGTTC-A-ACCAT--TTTC---ATTGACCTTTT-----TAGATTGTTTC--CTAGGT-G-A---C---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT
Alignments
lowQualScore : 22222 22222 1111 222222 3333333333333333333333 1111 11 111 2222222 7777777777777777777777777777 22222222 111 33333333333333333333 1111111 888888888888888888888888888888888 1111111111 22222222222 66666666666666666 111 222222222222 1 1 1111111111111
lowQualScore : 11111 1 2 5 1 1 1 444 9 00000 2 44 666 2222 3 1 5 777 88 3 3 111111 888 0 5 66666 1 2 55555 444 0000000000000000000000 222 1111 4 11 000 1 0 3333333 777 1 4444444444444444444444444444 77 0 2 6 5 88888888 3 222 22222222222222222222 9999 6 55 4 777 1 555 3 0000000 22 555 111111111111111111111111111111111 55 99999 3 4444444444 555 44 3 3 0 0 4 44 22222222222 4 99 333 88888888888888888 333 0 222222222222 55 0 0 1 6 9999999999999 3 8 5
lowQualScore : ..... . . . . . . ... . ..... . .. ... .... . . . ... .. . . ...... ... . . ..... . . ..... ... ...................... ... .... . .. ... . . ....... ... . ............................ .. . . . . ........ . ... .................... .... . .. . ... . ... . ....... .. ... ................................. .. ..... . .......... ... .. . . . . . .. ........... . .. ... ................. ... . ............ .. . . . . ............. . . .
lowQualScore : 77777 0 7 0 0 0 0 888 2 00000 0 66 444 5555 6 8 1 000 55 3 3 777777 555 5 4 22222 0 1 44444 999 1111111111111111111111 555 4444 0 00 444 1 8 6666666 888 7 1111111111111111111111111111 99 1 5 5 7 55555555 1 222 88888888888888888888 4444 4 55 0 000 3 888 3 8888888 88 888 999999999999999999999999999999999 00 99999 0 6666666666 888 66 6 6 4 4 0 99 99999999999 4 00 555 55555555555555555 888 2 000000000000 44 0 2 0 7 2222222222222 8 0 0
consensus : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-A-CATA-TTTC---ATTGAANTTTTGC---TGAANTGTTNC--CCNAGT-G-A---C---C-----TAC-----CAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
Reference ( family-2529 ) : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-A-CATA-TTTC---ATTGAANTTTTGC---TGAANTGTTNC--CCNAGT-G-A---C---C-----TAC-----CAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
gi|1 : T---TTA--CATGGGTTTGTA-TA-AGGAAAACGTAAAATA--TT---------TTTCTGCCA-GAAGGC-ACAGATTCAG--T-TTT---AA---A---A-CTTGGTTACA-------ATGTACCGTGTGTGGTGTTCT---TCAAG---------------T--TT-A---A------TGTT--TTA---TTAATCA----------TCCAA----ATCATCA--TCTGGG-CC-CTGACC-A-ATT-----CTAG--A-TTTTG-AAAGTTTAAATGCTATTT----------T--TGAAACTCTCAAACAATTTTCATT---------A--GA-ATT-TT-CTCAGATT-GTCTC--GCTTG-AGACCCTCTTCCAAAATTA-TG
gi|1 : TCTTGCAATCGGGC-ACCAAAGATGGCTGTCTTGGCTCTGCC-GAT---TTAAAAAAATT--CAAACATTT-AG-CAACATCT--TCTATAAAGATTG-A-A-C-------C---ATTGAACTATTGT---AAAATTGTTT-----AAAA-A-AAT-C---C-----TGCATGTAAAACCGTGT---GTTT------------GGTGTCGAAC-AAGA--TG---GCTGCCA-tttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|10 : tttacatgggtttgtataaggaaaacgtaaaatatttttctgccagaaggcacagattcagttttaaaacttggttacaatgtaccgtgtgtggtgttcttcaagtttaatgttttattaatcatccaaatcatcatctgggccctgaccaattctagattttgaaagtttaaatgctatttttgaaactctcaaacaattttcattagaattttctcagattgtctcgcttgagaccctcttccaaaattatgtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgTTTATGTTGCTGGCAGCC-ATCCATGATTGTATCCAGGACTCCG-----TTTATTAGAT---TTTTCCAATACT---AGCAACATCTC-T--GAAACTACTG-A-A-C-TA-TTTT---CTTGAACTTTTAT---TAAAATATTCC--TAAAGT-G-A---C---CGCATGTGC-----CAAACGTAT---GTTttgccaaactagccaaaatgagttatgtgattgcattt
gi|11 : TACCCTTTCAGA-CTTTTGTTCGATGTCAGTCGATTTAAGATGGCAGCCAGGGCCCCTCC-TATTTTTTAAA----------AAAATGT-AGGTGAAATATC-TTC--AAT--TCG-A-ATCAT--TTTCA--ATTATAGTTTT-C---TTAATTGTTAC--CCTAGT-GAA---CCG-C-----TAC-----TGAAGTTAT---TTGTTTA-T--GTTCGAACGTGAAACAAA-A--TG---GCCACCATG-----GAT-----Tatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|12 : AAC-C-ACAGACTCGA--T-TTT---AATAAT---A-CTTGACATCA-------GTGTACTTTAAGTAATAACCTCAATTCAGAAG-------T--ATT--TT-GT--G------TTTT--T--ACGT----------------TCCAACCTGATGGCAAATTTA-GA-CC-CCATCC-A-GTT-----TTAA--A-TTTTG-AAACTTTAAACGATATCT--C-----TCTAAT--CACT---TAATCATTTTC-TT---------GTTAA-ATTGTTACTggcc
gi|13 : T---TTCAGA---------A--A-T--TC-GGT-A------TT------GATATTGGTCACCCACCCCCTCCCAA---GATGGACG--CAAGGATCC-CCGTTC-A-TCT-----TTAT--A-TTTTG--ACCTTTGAACAACATTT--TTAGAAGCT--T----TT---GAACAATTTTCATT---------C--AA-TGT-TTGTTAAATTG-ATATCTTGCTC----ACCCTCTATAAAAAGTG-TGGTTT
gi|15 : TAAAATATTCT---------TTTCT-----GAAT-CTACTGACTCTA--T-TTT---AATAAC---A-AATGACCTAA-------ATGTACTGTGGGTGGTGCCGT---TTCAGACATGGGTGGT--A-T--TTCAG--AATTACCTTTT--TTAAAATTGGTCA----------TCCAA---GACGGCCA--CCAGGA-CC-CCACCG-AGTTT-----GT-T--
gi|18 : TC-TCTGAATGCAATG-A-A-CCAA-TTTT---ATCGAAATTTTGC---TGAAAGGTTAC--TCAAGT-A-ATATT---C-----TCT-----CATTAGTGT---TTTTTTT-T--GTCTCAGCGTCAAAC-AACA--TG---GACGCCA-GTTCTTGACCAA--TAT-TTTACT---CTATTCATCGGATTTTA-Ttgttt
gi|19 : caTAGG--TTTA-TA-TA----AGGTACATT---CT---------TCTCT--A--AAAC-C-ACTGAA-CAG--T-TTT---AGTAAA---A-CATGGCCTCA-------ATGCACCTTG-----TAC--T---TTCA--------------------T-G----------TTTT--TTGACGTCTGTCA----------TCCAA---GATGGTCG--CCAGGT-CC-CTACCt
gi|2 : ccGGGTGATGCCCCTTCAGAATTTTTTTTTTAAATCAATA-A-CAAAGATGGACATCAAAACCCAGCCCAGTGTTTCTCAT---TT--TAAAGCTTT-AAATGACATTTTGTCTGAAATCATTG-A-A-CATA-TTTG---ATTGAAATTTTGC---TGAAATGTTTC--CTCTGT-G-A---C---C-----TAT-----CAAATATGT---GTTTTTT-T--GTACGAGCTTCAAAC-A-----TG---GCCTTTA-G-----GAT-----TAGATT--CT---TTA--CATAGGATTTTA-CA-AC----AGGTAAAAT---CT---------TTTCT--C--AAAT-C-ACCAACTTAA--T-TCA---AATAAA---A-CTTAGTCACA-------ATGTACCTTGGATAGTGTCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCTATGTCGGTCA----------TCCAA---GATGGCTC--CCATGG-CC-TTGCCC-A-TAT-----GT-T--A-TTTTG-AAACTTAAATTGACATCT--T----ATCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-CTAT---GCTCA-TGACCCTGTCCAAAAAGTA-TGGGTTTTT
gi|20 : AAAAT---CT---------TTTTG--C---AAC-T-ACTGAATCAAATC-TTT---AA-ACA---A-CATGGTCACA-------ATGTACCTTTGATGATGCCTT---TTAAAG---------TGCA-TTGTT-TA--T------TTTT--TTAAC--TGCTCA----------TCCAA---GTTGGTCG--CCAGGa
gi|21 : -TTTT---ATTGAAATTTTTC---TGAAATGTAAC--TGTTGT-G-A---CCCTC-----TAC-----TAAAATTCT---TTATTTT-TGAGTCTGGGCATCAGAC-AAGA--TG---GCCAC
gi|22 : acCA----------TCCAA---TATAGCCA--CCAAGA-CC-CCGTTC-A-TTT-----AT-TTGA-TTTTG-AACCT--------CCTCTGTC----A-CT------ACT---GAACCATTTTCATT---------G--AATATT-TCACt
gi|23 : gaTTAGAT---TT--GGTAAATTC-AAATAACAT--C-TTTGAAACTGTTGAA-A-CAC--TTTC---ATTGCAA-TTTGC---TTAACTGTTTC--CCTGGTAA-A---C---C-----T
gi|24 : CCAGCC-A--GTTTCTTAT---TT--GAAAAATTT-AAACGACATGTCATCTGAAAACACTG-A-A-CTTA-TTTT---ATTGtct
gi|25 : atagaaaAA---A-ATTGGCCACA-------TTGTCTTTTGAATAGTGTCCT---TTCAGA---------T----T--TT-AG--T------TTTT--TC
gi|26 : ACAAA---A-TTTGGCTACA-------ATGTAACTTGGGCGATGCCCT---TTCA
gi|3 : TGAGGTTGGCC-ATCTAAGATTTCTGACAACGCCCTGCC-AA-GTTTT-TAT---TT--CAAAACTTT-AAACAATATCTC-T--GAAACC-----A-A-CATA-TTTC---TGTGGAATTTTGC---TGAAATGTTAC--TCTACC-G-A----------------------AATTGTGTT--GTTTTTT-TCTGTCCGAGTGCGAAGC-AA-GATTGCATGCCGCCA-A------ATGTTTTTAT-TC-------TTA--CATAGGATTTTACT---T----GGGGACGAT---CT---------TTTCT---------------GACTCAA--T-TTTGATAATAAA---A-CTTTGCTACA-------ATGTACCTTGGACAATGCCCT---GTCA--------------------------A------TTTT--TTTACATTGGCCA----------GTCAA---AATGGCAT--TGAGGA-CCACCGCCTGA-TTT-----TA-G--A-TTTTGAAAATTTTAAGTGACATCT--T----AGA------AACTA--GAAACATTTTCAGT---------G--GA-ATT-TT-CTGAGATT-ATTTC---CTTGATGATCCT
gi|4 : GTC-ATCCAAAATTGCAGTTGGAGCCCTGCC-CA-GTTTTAGAT---TT--TGAAAGTTTAAAAAAACATCTC-----GAACTGTTG-A-A-T-TA-TTTTTAGATTG---TTTCACTTGTGAGCCTTTACTACCGAAT-G-G---C---C------AC-----CAGGGCTCT---GTTGTTT-T--gttttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|5 : TTTTGTTTTACATATGTC-ATCCAAAATGGCGGTTGG--------C-AAT--TTTATAT---TT--TGAAAATAA-AAATGACATC---TCTGAAACTATTG-ATA-AAT--TTTC---TTCAAACTTTTAT---TATTTTGCTTC--CCTGGT-------T---C-----TAC-------ATTGTGT----TTGTTT-T--GTCT--ACGT------------TT---GCCATCA-G-----GCTCCGC-TAT------T---TTA--CATA-GATTaacatatgctaatatagaaataagtttactcttctcttaaacgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|6 : TAACAT---CT------------CT--G--AAAT-C-ACATACTCAA--TGTTT---AATAAA---AACTTGTGCACA-------ATGTATTTTGGATGATGCCCT---TTC-----------------------------------TTT--TTGAGGTCAGTCA----------TCAAA---GGTTGCCG--TCTGGG-CC-C--CCA-A---------GG-T--A-TTTCA-----TTTAAAATACATCT--C----TGATG-C--CACT---GAAGTAGTTTCATT---------G--AA---T-TTGCTGAAATGTATA--------G-TGACCCTCTACCGAGGGTGTTTGGTTTTaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|6 : GGATGATGCCCTTTC--------TTTTTGAGGTCAGTC-ATCAAAGGTTGCCGTCTGGGCCC--CC-AAGGT-----AT---TT--C----ATTT-AAAATACA--TC-TCTGATGCCACTG-A-A--GTAGTTTC---ATTGAA--TTTGC---TGAAATGT------ATAGT-G-A---CCCTC-----TAC-----CGAGGGTGTTTGGTTTTAT-T--TT------GTCAAACAAA-A--TG---GCCACCT-T-----GA--------------CT---TTG--C-CA--ATTTTG-T--AC----AGGGAAGAT---CT---------TT--------GAA----ACC-ACTCAA--T-TTT---ATTAAA---A-CTTAGCCCCA-------Aattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|7 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttTTTTGA---TGAATTATTAC--CTTAGT-A-A---C---CGTC--TAC-----TAAAATTGT---GTTTTTTGT--GTGCGAGCATCAA-C-AAGA--TG---GCCACCA-A-----GGT-----TTT-GC--CTATTTTG--CGTAGG--TTTA-TATAG----AGA-AAACT---CTGCAATATTGTTTCC--CTGAAAC-C-ACTGACTCTA--T-TTT---AGTAAATTAA-CTTAACCACACATATAAATGTACCTCAGGCTGTGCCTT---TTAAAA------------A-T--T--GGCTG------TTTTAATCGATATCGATCA----------TCCAA---GATGGCTG--GCTG----C-CCAGTT-A-TTT-----TT-T--A-TTTTG-CAACTTTAAgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|8 : ttcaatttactttgctatgg----------TCCAA---GATGGCTG--CCATGA-CC-TTGTCC-A-TTTTAAGAAT-T--GTTTTTC-AAACATTAAGCAGAATAT--T----TTCT------ATT---GAACTATTTTTATCTACTATTAAG--AA-ATTGTTTCTTAAGTG-ACTGC--GCTTG-T----------CAAAATTA-T--GTTTTTtagac
gi|9 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatatTAGAT---AT--TGAAAATTT-AAATGGCA--TC-ACTGGAACTGTTC-A-ACCAT--TTTC---ATTGACCTTTT-----TAGATTGTTTC--CTAGGT-G-A---C---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
blockSeqs : AGAAT T A G C T A AGG C CAGTG A AG . TTCC A C C GTC TA A T TCAT TAG C ACTTG A C TACCG GA CCGCATGTGCC ACG TTGG G GA TCG G AAGAT CAT A AGGTTTTGCCTATT TT G A C ATAG T ATT GCAATATTGTTTCCCTGA TCT A AT G GAT T TTA A CATATAA TA CAA GACATGGGTGGTATTTCAGAATTACC AA TAAAA T CCCACCCCCT CCT AT T A G GT TAAGAATT T AA ACG TTAGAAGCTT A TACTATTAAG TA G A A T TTCCTTGATG A T G
blockSeqs : . T A . T G A AGG C TATT T AA . TA . T A ATC CA . . CCAA A G AT T A TAA AA TATTCTCTC AGT TG . CT CTC C AAAA . G AATGTTTTTATTC . G A . ATA T . TCTCTAA CC T . . . T . . . TG . AGTGCATTGTTTAT . TGACG T . . . . . . G ATTTG . A ACA CTCTAATC . GTT A G G G . ATCTTGCTC C . G
blockSeqs : A A . A G C AAA A AAGG T TC . GG . T T TT CA . . CATA . A GC A A CCT G CCCTCTACT TAG G . . ACG C AACA . T GGATTAGATTCT . G A . AAC T . TTTCTCA CC T . . . T . . . TA . GAAGTATTTTGTG . CTATG C . . . . . . T TTAA . A TTG CTGATGCC . C T . A G . ATGCTCATG A . T
blockSeqs : G G . T T T AAC A AAG T AG . GA . T G TC TG . . CTTA . A GC A T TCA A CCCTCTACC ATA T . . CTG C AAGA . A GGCTCCGCTATT . G A . AC G . TTTCTG TC C . . . T . . . TG . GAAATTCGGTA . TTACA C . . . . . . T TTAT . A GTG TATCTTA . G A . A G . TGCGCTTGT . . .
blockSeqs : C T . C T A GGA T CAG T TT . CA . C C TT CA . . CATA . A TC A A CTC G CCGTCTACT AAT T . . CCG G AAAA . G TGACT . G A . T T . TTTTGC CT T . . . C . . . TA . GATATTTGGA . TGAGG T . . . . . . T GTT . C AAT GTCACT . G A . G T . AGTG
blockSeqs : G A . C G G TGG T AAT T AG . TG . C C TC TG . . GTAG . A GC C T TGT G CCGCTACT TTG G . . GCG C AAGA . A . . . . G . TTTCT TC A . . . T . . . CG . AAATTGGCTG . CGATA T . . . . . . T GTT . A GCA TAGAA . G A . T
blockSeqs : . A T C GG . TT T AT . TG . A C TC TA . . CCAT . A GC A A CCT G CCTATC GGC T . . CT C A . A . . . . CTGA CC C . . . T . . . CA . GATTTTAGT . GATA C . . . . . . T TAG . . . TTTCT . G . . .
blockSeqs : . AG . AG . TG . T . AC CA . . CTA . C AT C A TCT G CCACC TTG G . . . . . . A . TTG . T . . . T . . . TG . TG . TAAC C . . . . . . T GGT . .
blockSeqs : T . C . A . T TG . . CAC . C GC T T CCT G TCTAC GGG G . . . . . . . T . . . CT . A . ACG . . . . . . . . TTT
blockSeqs : . . . . T . T C . . TTA . . GA A A CTT A . AAT . . . . . . . . . . . . . .
blockSeqs : . . . . AAT . . C T T CTA G . . . . . . .
blockSeqs : . . T . AT .
blockSeqCons : *** CCNA** CCT** CCTCTACC************** CCG GGGTTTTGTACT**************** AT****** *** TTTCTA************** CC** GATATTTGGN*********************** CGACG GTT******** TTTCT************ *** ATCNTNNTN****
originalCons : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-A-CATA-TTTC---ATTGAANTTTTGC---TGAANTGTTNC--CCNAGT-G-A---C---C-----TAC-----CAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-G-----GAT-----TAT-TC--CT---TTA--CATAGGATTTTA-TA-AN----AGGTAAAAT---CT---------TTTCT--C--GAAC-C-ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGA---------T--A-T--TT-GG--A------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--A-TTTTG-AAACTTTAAACGACATCT--C----ANCT--T--AACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATNTC--GCTCG-TGACCCTCTNCCAAAAGTA-TGGGTTTTT
finalCons : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCCCCGCC-AATGTTTTANAT---TT--CGAAAATTT-AAACGACATCTC-TCTGAAACCGTTG-A-ACCNA--TTTC---ATTGAANTTTTGC---TGAANTGTTNCCCT--AGT-G-ACCTCTACC--------------AANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCAGGGTTTTGTACT----------------TTA--CATAGGATTTTA-TAT------AGGTAAAAT---CTTTTCTA--------------AACC--ACCGACTCAA--T-TTT---AATAAA---A-CTTGGCCACA-------ATGTACCTTGGGCGGTGCCCT---TTCAGATATTTGGN-----------------------TTTT--TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTTGTT--------A-TTTTG-AAACTTTAAACGACATCTTTTCT------------ACT---GAACCATTTTCATT---------G--AA-ATT-TTACTGAAATG-ATATCNTNNTN----ACCCTCTNCCAAAAGTA-TGGGTTTTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT
Alignments
lowQualScore : 22222 222222 1111 111111 11 111111 11111111 22222222222222222222222222 1111 2222222 33333333333 11 111111 111 22222222222222222222 1111111 666666666666666666666666666666666 111111 1111111111 22222222222 11 44444444444444 22222222222222222
lowQualScore : 0 99999 2 1 1 4 0 1 1 1 4 1 4 7 555555 0 33 555 1111 3 2 3 999999 22 555555 2 4 6 2 1 11111111 4 444 33333333333333333333333333 1111 5555 1 1 0000000 666 1 88888 55555555555 4 77777 3 7 11 5 222222 8888 4 111 77777777777777777777 3 4 8 55 4 777 1 555 3 0000000 22 555 666666666666666666666666666666666 666666 55 3 4444444444 555 44 3 3 0 0 4 44 99999999999 33 333 66666666666666 5 0 66 88 5 7 77 22222222222222222 99 1 8 5
lowQualScore : . ..... . . . . . . . . . . . . ...... . .. ... .... . . . ...... .. ...... . . . . . ........ . ... .......................... .... .... . . ....... ... . ..... ........... . ..... . . .. . ...... .... . ... .................... . . . .. . ... . ... . ....... .. ... ................................. ...... .. . .......... ... .. . . . . . .. ........... .. ... .............. . . .. .. . . .. ................. .. . . .
lowQualScore : 7 22222 5 0 1 4 8 0 0 0 4 9 0 3 666666 9 66 888 2222 3 2 3 888888 11 000000 9 0 6 9 0 33333333 4 555 99999999999999999999999999 4444 6666 4 2 2222222 444 0 66666 11111111111 4 77777 9 4 44 7 888888 5555 0 000 00000000000000000000 6 0 9 55 0 000 3 888 3 8888888 88 888 222222222222222222222222222222222 777777 33 0 6666666666 888 66 6 6 4 4 0 99 00000000000 44 555 00000000000000 0 2 99 44 0 0 99 88888888888888888 22 0 0 0
consensus : GGACGATGCCCTTTCAGA-CTTTTTTTTGACGTCGGTC-ATCCAAGATGGCNGTCGGGGCC-CCGCC-AATG-TTTTAGAT---TT--CGAAAA-TTTAAACGA-CATCTC-TCT-GAAACCGTTGAACCAA--TTTC-ATTGAANTTTTGCTGA-ANTGTT-------NCCCTNGT-G-A-C-C-TC---TACCAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AAGA--TG---GCCGCCA-GG-GTTCTG----------TACT-TT--A--CATAGGATTTTATA-TA-GG------TAA----AA-T---CT---------TTTC-T-----AAA-CC-ACNGACTCAA--T-TTT---AATAA---AA-CTTGGCCAC-------AATGTACCTTGGGCGGTGCCCT---TTCAGA--T--A-T----------------TTGGTT-TTT---TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----NT-T--ATTTTG-AAACTTTAAACGACATCTTT-----T-CT----ACT-GAACCATTTTCATTG--AA-ATT-TTACT--GAAATGATNT-CTT-GNT---GAC--CCTCTNCCAAAAGTA-TGGGTTTTT
Reference ( family-2529 ) : GGGTGATGCCCTTTCAGA-CTTTTTTTTGANGTCGGTC-ATCNAAGATNGCNGTCGGGGCC-CCGCC-AATG-TTTTANAT---TT--CGAAAA-TTTAAACGA-CATCTC-TCT-GAAACCGTTGAACCNA--TTTC-ATTGAANTTTTGCTGA-ANTGTT-------NCCCTAGT-G-A-C-C-TC---TACCAANNGTGT---GTTTTTT-T--GTCCGAGCGTCAAAC-AA-A--TG---GCCGCCA-GG-GTTTTG----------TACT-TT--A--CATAGGATTTTATA-TA-GG------TAA----AA-T---CT---------TTTC-T-----AAA-CC-ACCGACTCAA--T-TTT---AATAA---AA-CTTGGCCAC-------AATGTACCTTGGGCGGTGCCCT---TTCAGA--T--A-T----------------TTGGNT-TTT---TCGACGTCGGTCA----------TCCAA---GATGGCCG--CCAGGA-CC-CCGCCC-A-TTT-----GT-T--ATTTTG-AAACTTTAAACGACATCTTT-----T-CT----ACT-GAACCATTTTCATTG--AA-ATT-TTACT--GAAATGATAT-CNT-NNT---NAC--CCTCTNCCAAAAGTA-TGGGTTTTT
gi|1 : T-TT--A--CATGGGTTTGTATA--A-GGAAAACGTAA----AA-TA--TT---------TTTC-TGCCAGAAG-GC-ACAGATTCAG--T-TTT---AA------AA-CTTGGTTAC-------AATGTACCGTGTGTGGTGTTCT---TCAAG--------T----------------TTAATG-TTT---T----ATTAATCA----------TCCAA----ATCATCA--TCTGGG-CC-CTGACC-A-ATT-----CTAG--ATTTTG-AAAGTTTAAATGCTATTTTTGAAACT-CT------C-AAACAATTTTCATTA--GA-ATT-TT-CT--CAGAT--TGT-CTC-GCTTGAGAC--CCTCTTCCAAAATTA-TG
gi|1 : TCTTGCAATCGGGC-ACCAAAGATGGCTGTCTTGGCT-CTGCC-GAT----TTAAAAAAATT--CAAACA-TTTAG-CAA-CATCT--TCT-ATAAAGATTGAACC---------ATTGAACTATTGTAAA-ATTGTTTAAAAAAATCCT------G-C-A-TG---TA-AAACCGTGT---GTTT------------GGTGTCGAAC-AAGA--TG---GCTGCCA-tttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgtcttgcaatcgggcaccaaagatggctgtcttggctctgccgatttaaaaaaattcaaacatttagcaacatcttctataaagattgaaccattgaactattgtaaaattgtttaaaaaaatcctgcatgtaaaaccgtgtgtttggtgtcgaacaagatggctgccattgccaaactagccaaaatgagttatgtgattgcattt
gi|10 : tttacatgggtttgtataaggaaaacgtaaaatatttttctgccagaaggcacagattcagttttaaaacttggttacaatgtaccgtgtgtggtgttcttcaagtttaatgttttattaatcatccaaatcatcatctgggccctgaccaattctagattttgaaagtttaaatgctatttttgaaactctcaaacaattttcattagaattttctcagattgtctcgcttgagaccctcttccaaaattatgtttattttgtcctacatgtaagatgacctaaggctaacatagggaaaacttaaaggaactttcttaagcttgatgaatgcgaagtgtttgttatttgcaagaaatgtaagccattttagaagcatgTTTATGTTGCTGGCAGCC-ATCCATGATTGTATCCAGGACT-CCG-----TT-TATTAGAT---TTTTCCAATA-CT--AGCAA-CATCTC-T---GAAACTACTGAAC-TA--TTTT-CTTGAACTTTTATTAA-AATATT-------CCTAAAGT-G-A-C-C-GCATGTGCCAAACGTAT---GTTttgccaaactagccaaaatgagttatgtgattgcattt
gi|11 : TACCCTTTCAGA-CTTTTGTTCGATGTCAGTCGATTTAAGATGGCAGCCAGGGCC-CCTCC-TATT-TTTTAAA----------AAAA-TGTAGGTGA-AATATC-TTC---AAT--TCGAATCAT--TTTCAATTATAGTTTT-CTTA-ATTGTT-------ACCCTAGT-GAA-C-C-GC---TACTGAAGTTAT---TTGTTTA-T--GTTCGAACGTGAAACAAA-A--TG---GCCACCATGG-ATTatacgcgtctggatgatgtctgtccgggcttaactggtcaatataaatcggcgatcactttaggtccactttgggccaattcaatt
gi|12 : AA-CC-ACAGACTCGA--T-TTT---AATAA---TA-CTTGACATC-------AGTGTACTTTAAGTAATAACCTCAATTCAGAAGT--ATT----------------TTGTGT-TTT---T--ACGT----------------TCCAACCTGATGGCAAATTTA-GA-CC-CCATCC-A-GTT------T-TAAATTTTG-AAACTTTAAACGATATC-TC-----T-CTAATCACT-TAATCATTTTC-TTGTTAA-ATTGTTACT--ggcc
gi|13 : T---TTCAGA--A--A-T----------------TCGGTA-TT------GATATTGGTCACCCACCCCCTCCCAA---GATGGACG--CAAGGATCC-CCGTTC-A-TCT-----TTAT--ATTTTG--ACCTTTGAACAACATTTTTAGAA-G-CT----TTT-GAACAATTTTCATTC--AA-TGT-TTGTT--AAATTGATAT-CTT-GCT---CAC--CCTCTATAAAAAGTG-TGGTTT
gi|15 : ------TAA----AA-TATTCT---------TTTC-T-----GAA-TCTACTGACTCTA--T-TTT---AATAA---CA-AATGACCTA-------AATGTACTGTGGGTGGTGCCGT---TTCAGA--C--A-TGGGTGGTATTTCAGAATTACCT-TTT---TTAAAATTGGTCA----------TCCAA---GACGGCCA--CCAGGA-CC-CCACCG-AGTTT-----GT-T--
gi|18 : TC-TCT-GAATGCAATGAACCAA--TTTT-ATCGAAATTTTGCTGA-AAGGTT-------ACTCAAGT-A-A-TAT-TC---TCTCATTAGTGT---TTTTTTT-T--GTCTCAGCGTCAAAC-AACA--TG---GACGCCA--G-TTCTTGACCAATATTTTACT-CT--ATTCATCGGATTTTATtgttt
gi|19 : caTAGG--TTTATA-TAAGG------TAC----AT-T---CT---------TCTC-T-----AAAACC-ACTGAA-CAG--T-TTT---AGTAA---AA-CATGGCCTC-------AATGCACCTTG-----TAC--T---TTCA---------------------------TG--T-TTT---TTGACGTCTGTCA----------TCCAA---GATGGTCG--CCAGGT-CC-CTACCt
gi|2 : ccGGGTGATGCCCCTTCAGAATTTTTTTTTTAAATCAATA-A-CAAAGATGGACATCAAAACC-CAGCCCAGTG-TTTCTCAT---TT--TAAAGC-TTTAAATGA-CATTTTGTCT-GAAATCATTGAACATA--TTTG-ATTGAAATTTTGCTGA-AATGTT-------TCCTCTGT-G-A-C-C-T-----ATCAAATATGT---GTTTTTT-T--GTACGAGCTTCAAAC-A-----TG---GCCTTTA-GG-ATTAGA----------TTCT-TT--A--CATAGGATTTTACAACA-GG------TAA----AA-T---CT---------TTTC-TC----AAA-TC-ACCAACTTAA--T-TCA---AATAA---AA-CTTAGTCAC-------AATGTACCTTGGATAGTGTCCT---TTCAGA--T--A-T----------------TTGGAT-TTT---TCTATGTCGGTCA----------TCCAA---GATGGCTC--CCATGG-CC-TTGCCC-A-TAT-----GT-T--ATTTTG-AAACTTAAATTGACATCTTA-----T-CTTA--ACT-GAACCATTTTCATTG--AA-ATT-TTACT--GAAATGCTAT-GCT-CAT---GAC--CCTGTCCAAAAAGTA-TGGGTTTTT
gi|20 : AA----AA-T---CT---------TTTT-G-----CAA-CT-ACTGAATCAAATC-TTT---AA-AC---AA-CATGGTCAC-------AATGTACCTTTGATGATGCCTT---TTAAAG--TGCA-TTG--------------TTTATT-TTT---TTAAC--TGCTCA----------TCCAA---GTTGGTCG--CCAGGa
gi|21 : --TTTT-ATTGAAATTTTTCTGA-AATGTA-------ACTGTTGT-G-ACC-C-TC---TACTAAAATTCT---TTATTTT-TGAGTCTGGGCATCAGAC-AAGA--TG---GCCAC
gi|22 : acCA----------TCCAA---TATAGCCA--CCAAGA-CC-CCGTTC-A-TTT-----AT-TTGATTTTG-AACCT--------CCTCTGT-----CACT----ACT-GAACCATTTTCATTG--AATATT-TCACt
gi|23 : gaTTAGAT---TT--GGTAAA-TTCAAATAA-CATCTT-T---GAAACTGTTGAAACAC--TTTC-ATTGCAA-TTTGCTTA-ACTGTT-------TCCCTGGTAA-A-C-C-T
gi|24 : C-CAGCC-A--G-TTTCTTAT---TT--GAAAAA-TTTAAACGA-CATGTCATCT-GAAAACACTGAACTTA--TTTT-ATTGtct
gi|25 : atagaaaA---AA-ATTGGCCAC-------ATTGTCTTTTGAATAGTGTCCT---TTCAGA--T----T----------------TTAGTT-TTT---TC
gi|26 : ACAA---AA-TTTGGCTAC-------AATGTAACTTGGGCGATGCCCT---TTCA
gi|3 : TGAGGTTGGCC-ATCTAAGATTTCTGACAACGCC-CTGCC-AA-G-TTTT-TAT---TT--CAAAAC-TTTAAACAA-TATCTC-T---GAAACC----AACATA--TTTC-TGTGGAATTTTGCTGA-AATGTT-------ACTCTACC-G-A--------------AATTGTGTT--GTTTTTT-TCTGTCCGAGTGCGAAGC-AA-GATTGCATGCCGCCA-AATGTTTT-----------TATTCTT--A--CATAGGATTTTACT-TG-GG------GAC----GA-T---CT---------TTTC-T---------------GACTCAA--T-TTTGATAATAA---AA-CTTTGCTAC-------AATGTACCTTGGACAATGCCCT---GTCA-------A-T----------------TT---T-TTT------ACATTGGCCA----------GTCAA---AATGGCAT--TGAGGA-CCACCGCCTGA-TTT-----TA-G--ATTTTGAAAATTTTAAGTGACATCTTA-----G-AA----ACTAGAAACATTTTCAGTG--GA-ATT-TT-CT--GAGATTATTTCCTT-GAT---GAT--CCT
gi|3 : GGACAATGCCCTGTCAA----TTTTTTT-ACATTGGCC-AGTCAAAATGGCATTGAGGACCACCGCC---TGATTTTAGAT---TT--TGAAAATTTTAAGTGA-CATCT----TAGAAAC--TAGAAACAT--TTTC-AGTGGAATTTT-CTGAGATTATT-------TCCTTGAT-G-A-T-C--C---TG----------------TTTT-A--ATCCGAGTGTCAGAC-AAGA--TG---GCTGCCA-AG-GCTCTGT---------TACT-CT--gttttaatccgagtgtcagacaagatggctgccaaggctctgttactcttaaca
gi|4 : tgaggttggccatctaagatttctgacaacgccctgccaagtttttatttcaaaactttaaacaatatctctgaaaccaacatatttctgtggaattttgctgaaatgttactctaccgaaattgtgttgtttttttctgtccgagtgcgaagcaagattgcatgccgccaaatgtttttattcttacataggattttacttggggacgatcttttctgactcaattttgataataaaactttgctacaatgtaccttGTC-ATCCAAAATTGCAGTTGGAGCC-CTGCC-CA-G-TTTTAGAT---TT--TGAAAG-TTTAAAAAAACATCTC------GAACTGTTGA----A--TT--------ATTTT---TAG-ATTGTT-------TCACTTGT-G-AGC-C-TT---TACTA-----------------------CCG------------A-A--TG---GCCACCA-GG-GCTCTG----------TTGT-TTTAA--CATATGCTAATATA-GA-AA------TAAGTTTAC-T---CT---------TCTCTT-----AAA-Ctaaca
gi|5 : TTTTGTTTTACATATGTC-ATCCAAAATGGCGGTTGG---------C-AAT---TTTATAT---TT--TGAAAA-TAAAAATGA-CATC---TCT-GAAACTATTGA--TAAATTTTC-TTCAAACTTTTATTAT-TTTGCT-------TCCCTGGT---------TC---TAC--ATTGTGT----TTGTTT-T--GTCT--ACGT------------TT---GCCATCA-GG-CTCCGC----------TATT-TT--A--CATA-GATTgtgacgagtgttaggggtttgatattttgaaagaaagataagcaaatagtgccagaattatgtgttgccgtcaatcgtcaaagttgtttgcctgaacgctgtccattttgagaatttcatattgtgcaatattctctctgatagttgaattactttccttcaactattatgaaaatatttcttaagctactacatgtttggtgaaacaagatgactgctctgaaactagtcaaaatgagtcctgtgatcacgttaagcccatttttgcctattgtaa
gi|6 : ------TAA----CA-T---CT------------C-TG----AAA-TC-ACATACTCAA--TGTTT---AATAA---AAACTTGTGCAC-------AATGTATTTTGGATGATGCCCT---TTC----------------------------------TTT---TTGAGGTCAGTCA----------TCAAA---GGTTGCCG--TCTGGG-CC-C--CCA-A---------GG-T--ATTTCA-----TTTAAAATACATCTCTGA---TGCC----ACT-GAAGTAGTTTCATTG--AA---T-TTGCT--GAAATG-TA----T-AGT---GAC--CCTCTACCGAGGGTGTTTGGTTTTaacacagagaagtatgtgttaccatcagatattcaagataacttgccggactctgtcaatttcaaacataaagcaacagtatatctgaacctattgaaatagtggctttaaactaaacttattgtttctcaagttactgcatcttacagaattgtttgtgtatgttaaacacaatggtttccctggaacaactagccacaaggaatcatgtggcagtttaagaccat
gi|6 : GGATGATGCCCTTTC--------TTTTTGAGGTCAGTC-ATCAAAGGTTGCCGTCTGGGCC-C--CC-AAGG-T-----AT---TT--C----A-TTTAAAATA-CA--TC-TCT-GATGCCACTGAAGTAG--TTTC-ATTGAA--TTTGCTGA-AATGT-----------ATAGT-G-ACC-C-TC---TACCGAGGGTGTTTGGTTTTAT-T--TT------GTCAAACAAA-A--TG---GCCACC--------TTG-----------ACT-TT--G--C-CA--ATTTTGTA-CA-GG------GAA----GA-T---CT---------TT---G-----AAA-CC-----ACTCAA--T-TTT---ATTAA---AA-CTTAGCCCC-------AAattttgtcaaacaaaatggccaccttgactttgccaattttgtacagggaagatctttgaaaccactcaattttattaaaacttagccccaagttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|7 : taacatctctgaaatcacatactcaatgtttaataaaaacttgtgcacaatgtattttTTTTGATGA-ATTATT-------ACCTTAGT-A-A-C-CGTC---TACTAAAATTGT---GTTTTTTGT--GTGCGAGCATCAA-C-AAGA--TG---GCCACCA-AG-GTTTTGCC--------TATT-TT--G--CGTAGG--TTTATA-TA-GA------GAA----AACT---CTGCAATATTGTTTC-CCTG--AAA-CC-ACTGACTCTA--T-TTT---AGTAAATTAA-CTTAACCACACATATAAATGTACCTCAGGCTGTGCCTT---TTAAAA-----A------------------TTGGCTGTTTTAATCGATATCGATCA----------TCCAA---GATGGCTG--GCTG----C-CCAGTT-A-TTT-----TT-T--ATTTTG-CAACTTTAAgttgtgggtgggttgtatttttgtttgagcttgtccatctgtttgtcct
gi|8 : ttcaatttactttgctatgg----------TCCAA---GATGGCTG--CCATGA-CC-TTGTCC-A-TTTTAAGAAT-T--GTTTTTCAAACATTAAGCAGAATATTT-----T-CT----ATT-GAACTATTTTTATCT--A------CTATTAAGAAATTGTTT-CTTAAGT---GACTGCGCTTGTCAAAATTA-T--GTTTTTtagac
gi|9 : tctctcagacaagtgcagtgctgagggtttgcaagttgtttcagcacaagatgcatcagcacaatttgccctttaaagactctgtgtttccactaatatTAGAT---AT--TGAAAA-TTTAAATGG-CATCAC-T---GGAACTGTTCAACCAT--TTTC-ATTGACCTTTT--TAG-ATTGTT-------TCCTAGGT-G-A---C-TC---TCATAATTATGT---gtttaaaccagatggatttccttgatctgctaaacccattttggtattttgat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGTTTGATATTTTGCATGAAATATTAGCACATGGTGTCTTTTCACAATTAGATATTGCCATCCAGCATTAAAATGGCTCTCTGGGCTCGTTCCATTTTAAGAATTTCAAACATTAAGTAAAACTGTCTTTTAACTATTGAGGAATTGTTTCTATAGTTTCTGCATA
Unaligned ( gi|16 ): GTTGCCATCAGTCACCTGGGATCTGCCCATTTTTAGAATTTCAAATATTAAGCAACAATTTGAATATAATTTAACTATTTTCTTTCTGCTATTGTGAAATTTTTTTTTAAAATTACTGCATTATTGTTTTTTGTGTTTCTGTGTGGAACAAGATGGCTGCC
Unaligned ( gi|17 ): CTCGGATAATTGAATTATTTCCTTTTAACTCTAGATTTTTACATTGTTTAAAATGTTAACTAGCTCTGCCTATAATACAATATGGTCTTTATGTTAAGCAAGATGGCTGAACTTGTTGAAATGAGTTGTGTGTTTACTTCAGGCACATTTCCTCTTGT