lowQualScore                  :                  2222                                           
lowQualScore                  :                  2222  1                  5555555               
lowQualScore                  :                  ....  .                  .......               
lowQualScore                  :                  5555  8                  7777777               
consensus                     :    TTTTACAGTAGGTT-T--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
Reference ( gi|7 )            :    TTTTACAGTAGGTT-A--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|6                          :    TTTTACTGTAGGTT-T--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAA
gi|14                         :    TTTAACAGTAGGTT-T--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAgt
gi|2                          :   aTTTTTCAGTAGATT-T--AT-CAGTCTGTCTGCAATATT-------CTATATATAGAAAAT
gi|20                         :   aTTTTACAGTAGGTT-T--AT-CAGTCTGTCTGCAGTATT-------TTATAg
gi|10                         :  taTTTAACGGTAAGTT-T--CT-CAGTCTGTGTGCAGTAAT-------TTATATATAGAAAga
gi|19                         :   aTTTTACAGTAGTTT-T--TT-CAGTCTGTCTGCAGTAGT-------TTATATAT
gi|22                         :  taTTTTGCAGCAGGTT-T--CT-TAGTCTGTCTGCAGTATT-------TT
gi|9                          :   aTTTCACAGTAGGTT--------------TTTGCAGTATT-------T--TATATAGAAAAT
gi|18                         : aataTTTACAGTAAGTT-T--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAtgtttatt
gi|16                         :     TTTACAGTAGGTT-T--CTTCAGTCTGTCTGCAGTATT-------TTATACATAGAA
gi|3                          :     TTTACAGTAGGGT-T--TT-CAGTCTGTATGCAGTATT-------TTATATATAGAAAAT
gi|13                         :    cTTTACATTAGGTT----TT-CAGTCTGTCTGCAGTATT-------TTATATA-AAAAAATtg
gi|4                          :      TTACAGTAGGTT-T--CT-CAGTCTGTATGCATTACT-------TTATATATAGAAAATt
gi|5                          :   atgTTATAGTAGGTTCAGTCT-CAGTCTGTCTGCAGTATT-------TTATATAAAGAAAt
gi|11                         :    taTTATACTAGGTT-T--CT-CAGTATGTCCGCAATATT-------GTATATATAGAAAAT
gi|8                          :     aTTATAGTAAATT-T--CT-CAGTCTGTCTGCAGTACT-------GTATATATA
gi|12                         :     aTTATAGTAAGTT-T--CT-CAGTCTGTCTGCAGTACT-------GAATGTTTAGAAAatacaag
gi|21                         :      taACAGTAGGTT-T--CT-CAGTCTGTCTGTAGTATT-------TTATATATAGAAA
gi|15                         :          AGTTGGTT-T--CT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|17                         :         tAGTAGGTT-T--CT-CAGTCTGTCTGCAGTATT-------T--TATATAGAAAATta
gi|1                          :           aaAGGTT-T--TT-CAGTCTGTCTGCAGTATTTTATATATTATATATAGAAAATta
gi|24                         :             tacaaatttaT-CAGTCTGTCTGCAGTATT-------TTATATATAGAATATtgt
gi|23                         :                              TGTCTGCAGTATT-------TAATATACAGAAAAT

lowQualScore                  :                         333   1                  5555555               
lowQualScore                  :                         ...   .                  .......               
lowQualScore                  :                         222   7                  4444444               
consensus                     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
Reference ( family-2466 )     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|1                          :                    AGGTT---TTT-CAGTCTGTCTGCAGTATTTTATATATTATATATAGAAAAT
gi|10                         : tacaaatttaTTTAACGGTAAGTT---TCT-CAGTCTGTGTGCAGTAAT-------TTATATATAGAAAtgt
gi|11                         :            aTTATACTAGGTT---TCT-CAGTATGTCCGCAATATT-------GTATATATAGAAAAT
gi|12                         :            aTTATAGTAAGTT---TCT-CAGTCTGTCTGCAGTACT-------GAATGTTTAGAAA
gi|13                         :          taTTTACATTAGGTT---T-T-CAGTCTGTCTGCAGTATT-------TTATATA-AAAAAAT
gi|14                         :           TTTAACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAt
gi|15                         :                aAGTTGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|16                         :           tTTTACAGTAGGTT---TCTTCAGTCTGTCTGCAGTATT-------TTATACATAGAAta
gi|17                         :                 AGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------T--TATATAGAAAAT
gi|18                         :          aaTTTACAGTAAGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAta
gi|19                         :           TTTTACAGTAGTTT---TTT-CAGTCTGTCTGCAGTAGT-------TTATATAT
gi|2                          :         taTTTTTCAGTAGATT---TAT-CAGTCTGTCTGCAATATT-------CTATATATAGAAAAT
gi|20                         :          aTTTTACAGTAGGTT---TAT-CAGTCTGTCTGCAGTATT-------TTATAg
gi|21                         :             taACAGTAGGTT---TCT-CAGTCTGTCTGTAGTATT-------TTATATATAGAAAga
gi|22                         :           TTTTGCAGCAGGTT---TCT-TAGTCTGTCTGCAGTATT-------TT
gi|23                         :                                    aTGTCTGCAGTATT-------TAATATACAGAAAAT
gi|24                         :                              T-CAGTCTGTCTGCAGTATT-------TTATATATAGAATATtgtttatat
gi|3                          :            TTTACAGTAGGGT---TTT-CAGTCTGTATGCAGTATT-------TTATATATAGAAAAT
gi|4                          :            cTTACAGTAGGTT---TCT-CAGTCTGTATGCATTACT-------TTATATATAGAAAATtg
gi|5                          :          atgTTATAGTAGGTTCAGTCT-CAGTCTGTCTGCAGTATT-------TTATATAAAGAAAt
gi|6                          :         taTTTTACTGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAA
gi|7                          :           TTTTACAGTAGGTT---ACT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAATgt
gi|8                          :             TTATAGTAAATT---TCT-CAGTCTGTCTGCAGTACT-------GTATATATA
gi|9                          :          aTTTCACAGTAGGTT---TTT-----------GCAGTATT-------T--TATATAGAAAATatacaag

lowQualScore                  :                         333   1                  5555555               
lowQualScore                  :                         ...   .                  .......               
lowQualScore                  :                         222   7                  4444444               
consensus                     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
Reference ( family-2466 )     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|1                          :                    AGGTT---TTT-CAGTCTGTCTGCAGTATTTTATATATTATATATAGAAAAT
gi|10                         : tacaaatttaTTTAACGGTAAGTT---TCT-CAGTCTGTGTGCAGTAAT-------TTATATATAGAAAtgt
gi|11                         :            aTTATACTAGGTT---TCT-CAGTATGTCCGCAATATT-------GTATATATAGAAAAT
gi|12                         :            aTTATAGTAAGTT---TCT-CAGTCTGTCTGCAGTACT-------GAATGTTTAGAAA
gi|13                         :          taTTTACATTAGGTT---T-T-CAGTCTGTCTGCAGTATT-------TTATATA-AAAAAAT
gi|14                         :           TTTAACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAt
gi|15                         :                aAGTTGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|16                         :           tTTTACAGTAGGTT---TCTTCAGTCTGTCTGCAGTATT-------TTATACATAGAAta
gi|17                         :                 AGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------T--TATATAGAAAAT
gi|18                         :          aaTTTACAGTAAGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAta
gi|19                         :           TTTTACAGTAGTTT---TTT-CAGTCTGTCTGCAGTAGT-------TTATATAT
gi|2                          :         taTTTTTCAGTAGATT---TAT-CAGTCTGTCTGCAATATT-------CTATATATAGAAAAT
gi|20                         :          aTTTTACAGTAGGTT---TAT-CAGTCTGTCTGCAGTATT-------TTATAg
gi|21                         :             taACAGTAGGTT---TCT-CAGTCTGTCTGTAGTATT-------TTATATATAGAAAga
gi|22                         :           TTTTGCAGCAGGTT---TCT-TAGTCTGTCTGCAGTATT-------TT
gi|23                         :                                    aTGTCTGCAGTATT-------TAATATACAGAAAAT
gi|24                         :                              T-CAGTCTGTCTGCAGTATT-------TTATATATAGAATATtgtttatat
gi|3                          :            TTTACAGTAGGGT---TTT-CAGTCTGTATGCAGTATT-------TTATATATAGAAAAT
gi|4                          :            cTTACAGTAGGTT---TCT-CAGTCTGTATGCATTACT-------TTATATATAGAAAATtg
gi|5                          :          atgTTATAGTAGGTTCAGTCT-CAGTCTGTCTGCAGTATT-------TTATATAAAGAAAt
gi|6                          :         taTTTTACTGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAA
gi|7                          :           TTTTACAGTAGGTT---ACT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAATgt
gi|8                          :             TTATAGTAAATT---TCT-CAGTCTGTCTGCAGTACT-------GTATATATA
gi|9                          :          aTTTCACAGTAGGTT---TTT-----------GCAGTATT-------T--TATATAGAAAATatacaag


blockSeqs                     :                         CAG   T                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                         .     .                  .      
blockSeqs                     :                               .                  .      
blockSeqs                     :                                                  .      


blockSeqCons                  :                                                  *******
originalCons                  :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
finalCons                     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT

lowQualScore                  :                         333   1                  5555555               
lowQualScore                  :                         ...   .                  .......               
lowQualScore                  :                         222   7                  4444444               
consensus                     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
Reference ( family-2466 )     :           TTTTACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|1                          :                    AGGTT---TTT-CAGTCTGTCTGCAGTATTTTATATATTATATATAGAAAAT
gi|10                         : tacaaatttaTTTAACGGTAAGTT---TCT-CAGTCTGTGTGCAGTAAT-------TTATATATAGAAAtgt
gi|11                         :            aTTATACTAGGTT---TCT-CAGTATGTCCGCAATATT-------GTATATATAGAAAAT
gi|12                         :            aTTATAGTAAGTT---TCT-CAGTCTGTCTGCAGTACT-------GAATGTTTAGAAA
gi|13                         :          taTTTACATTAGGTT---T-T-CAGTCTGTCTGCAGTATT-------TTATATA-AAAAAAT
gi|14                         :           TTTAACAGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAt
gi|15                         :                aAGTTGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAAT
gi|16                         :           tTTTACAGTAGGTT---TCTTCAGTCTGTCTGCAGTATT-------TTATACATAGAAta
gi|17                         :                 AGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------T--TATATAGAAAAT
gi|18                         :          aaTTTACAGTAAGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAta
gi|19                         :           TTTTACAGTAGTTT---TTT-CAGTCTGTCTGCAGTAGT-------TTATATAT
gi|2                          :         taTTTTTCAGTAGATT---TAT-CAGTCTGTCTGCAATATT-------CTATATATAGAAAAT
gi|20                         :          aTTTTACAGTAGGTT---TAT-CAGTCTGTCTGCAGTATT-------TTATAg
gi|21                         :             taACAGTAGGTT---TCT-CAGTCTGTCTGTAGTATT-------TTATATATAGAAAga
gi|22                         :           TTTTGCAGCAGGTT---TCT-TAGTCTGTCTGCAGTATT-------TT
gi|23                         :                                    aTGTCTGCAGTATT-------TAATATACAGAAAAT
gi|24                         :                              T-CAGTCTGTCTGCAGTATT-------TTATATATAGAATATtgtttatat
gi|3                          :            TTTACAGTAGGGT---TTT-CAGTCTGTATGCAGTATT-------TTATATATAGAAAAT
gi|4                          :            cTTACAGTAGGTT---TCT-CAGTCTGTATGCATTACT-------TTATATATAGAAAATtg
gi|5                          :          atgTTATAGTAGGTTCAGTCT-CAGTCTGTCTGCAGTATT-------TTATATAAAGAAAt
gi|6                          :         taTTTTACTGTAGGTT---TCT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAA
gi|7                          :           TTTTACAGTAGGTT---ACT-CAGTCTGTCTGCAGTATT-------TTATATATAGAAAATgt
gi|8                          :             TTATAGTAAATT---TCT-CAGTCTGTCTGCAGTACT-------GTATATATA
gi|9                          :          aTTTCACAGTAGGTT---TTT-----------GCAGTATT-------T--TATATAGAAAATatacaag