lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 000000000000000000000000000000000000000000000000000000000000 11 22222 1 3333333 111 1 111111111111 1111 3333333333
lowQualScore : 1 666666666666666666666666666666666666666666666666666666666666 3 4 33 11111 66 0 4 6 66 3 4444444 999 3 8 0 777777777777 4 0000 0 0 5555555555 77 1
lowQualScore : . ............................................................ . . .. ..... .. . . . .. . ....... ... . . . ............ . .... . . .......... .. .
lowQualScore : 0 222222222222222222222222222222222222222222222222222222222222 6 0 22 11111 11 1 4 2 11 0 1111111 666 9 9 7 888888888888 1 6666 7 7 6666666666 99 0
consensus : ACCTGATATCTCCCGAATCAGG---------------------T---C-----------N----------AT-------G--A-AAA-AGCAGGGAATTCCAC-GCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATT-C-AAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCC-GT------TCT--ACAGACT
Reference ( gi|4 ) : ATCTGATATCTCCCGAATCAGG---------------------T---C-----------A----------AT-------T--A-AAA-AGCAGGGACTTCTAT-TCCTG--TCCCA-CAATTCATAGCAGTTGAA--CGCTTACTTAACTGTGACGTAA-T-C-AAACTTTCAGTTGAAACAACTGACAAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGATCCAATCGG----GAGAGCTGGGTCC-GT------ACT--ACAGACT
gi|1 : ACCTGATAGATCCCGAATCAGG---------------------T---CT----------ATAAACGACCCAT-------G--A-AAA-AGCAGGGAATTCTAT-GAATG--TCCCA-CAATTCATAGCAATTGAA--CGCTCACTAAACTGTGACGTCATT-C-AAACTTTCTGTTGAAGCAACTGACCAATCAACGTACTCAAATGTGGCTTCTTCCCAACATTGCTAATTAACAGACCCAATCGG----AAAAGATGGATCC-AT------TCT--ATA
gi|7 : gaACCTGATATCTCCCGAATCAGG---------------------T---C-----------T----------AT-------T--A-A-----------CCTCCA----ATG--AAACAGCAATTCATAGCAACTGAA--CGCTTACTTAACTTTGACGTCATT-C-AAACTTTCAGTTGAAGCAACTGAC----CAA-----TCAAATGTG--------------CTGCTATTTAACGGACCCAATCGA----GAGta
gi|21 : ccaagaATCTTATATCTCCCGAACCGGG---------------------------------------------------------------AG-AGCTGGG--TTCTAttctacagac
gi|8 : tctatcctagaCTGATATCTCACGAATCAGGGATAGTACCCCACCCCTCACTC---C-----------A----------AT-------GGAA-AAA-AGGAGGGAATTCTAT-GCCTG--TTTCA-CAATTCGTGGCAGTTGAA--CGCTTACTAAAGTATGACGCCATT-C-TAACTTGC-CCTGAAGCAATTGACTTATCAACGTGCACAAcagac
gi|15 : accCTGAAATCTCCCGAGTCAAG---------------------T---C-----------T----------GT-------C--A-GA---GCAGGGAATTCCAC-ACCTG--TCGCA-CAGTTCACAGC
gi|9 : TGACATCTTCCAATTCAGG---------------------TATAC-----------C----------ATACGTTCAT--ATAAA-AGCATGTAATTCGCCGTCGTGAGTCCTA-CAATTCATAGCACTTTAATGCGTTTAC
gi|2 : tcccagtacgGATATCTCCCGAATCAGG---------------------T---CTATTAACCCACA----------AT-------G--A-AAA-AGCAGGGAATTCCAT-GCATG--TCGCA-CCACTCATAGCAAATGAA--CGCTTACTGAACTGTAACGTCATT-C-AAACTTTCAGTTTAAACAAC-GACCAATCAACGTCCTCTAATATGGCT--TTCCCAACATTACTATTTAACAGACCCAATCAG----TAGA-----GTTC-GT------TCT--ACAGACaaattatagttttgtacaaagtgtaaagcaacacatccacgt
gi|22 : gaaccgGATATCTCCCGAATTAAG---------------------T---T-----------T----------AT-------T--A-A
gi|12 : ctatacatagaacaaATCTGCTAAACC------------------------T---C-----------A----------AT-------G--A-AAA-AGCAGGGCATTCCAG-ACCTG--TCCCA-CAATTCAAAGCTCTTGAA--TGCTTcgc
gi|6 : aaTCTCCCAAATCAGG---------------------T---CTGATCAACTCCA----------AT-------G--A-AAA-GGAAGGGAATTCTAT-ATCTG--TCCCA-CAATTCATAGCTATTAAA--CGCCAATCAAAATGTTGCGT-------------TCGG--AAAGCAACTGACCAATCAACGTGCTTTAAAGCG------------CATTGCTATGCAACAGACCCACGCGG----GAGACCTGTGTCT-GT------TCT--ACAGt
gi|5 : ----------AT-------G--A-AAATAGGAGGGAATTCTTT-GCATA--CCCCA-CAATTGATAGCAATTGGA--CGCTTACTAAACTGTGACGTAA-T-TGAAACTTTC-CCTGAAGCAACTGAGCAATCAACATGCTCAAATACGGCT--TTTCCTGCATTTCTATTTAACATACCCAATCGG----GAGAGTTGGGTCCAGT-------CT--ACA-ACTtc
gi|14 : tgtgacaagatcaatataagatTGAA--CGCTAACTAAACTATGACGTCA-TTC-AAACTTTCA-CTGAAGCAACTGACCAATCAACGTGCa
gi|17 : TCAAATGTGGCT--TTACCAACATTGCTGTTTAACGGACCCAGTcta
gi|16 : ATTGCTATGAAACGGACTCACTCGGTCGAGAGAGCCGGGTCC---------ACTCAACAGACTgttcagtatgagt
gi|18 : CTATTTAACGAATCTAATTGG----GACAGCTGTATCC-GTCACGTGACT--ACAAACTa
gi|21 : AACCGG----GAGAGCTGGGTT-----------CT--ACAGACa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|10 ): TTTCCCACTTCAGGTCTGTTATATCCAGAAGAAAATGTTTGGAATTCCATAACTGTCCCGTGATTCATTGCCATTGCGCGTCATATGCTCGATGACCAATCAGCGTGTTTGTA
Unaligned ( gi|11 ): CATCATTCAACTTTCACTAAAGCAATTGACTTCAAATTTTACTGCTATGTGATGGACCCAAGCAATGAGTGCCGTTCATTCTAC
Unaligned ( gi|13 ): ATCTTTCGGATCGGGTCAGTTTTACCGCATTGAAGACAATGAAGAAATCCAATACATGTCCCACAATTCA
Unaligned ( gi|19 ): TATATATAACCTGATGTCATCAGAATCAGGTCTATTAGCCCCTAATCAAGCAG
Unaligned ( gi|20 ): CAAGAAACGTATTTCTTCCAAATCGAGTCTATTTACCCAAATACAGAAACCAG
Alignments
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999 111 111 111111111111 1111 111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000 3 77 0 111 1 44 3 55 1 0 888 0 11 0 11 444444444444 2222 33 111111
lowQualScore : ................................................................... . .. . ... . .. . .. . . ... . .. . .. ............ .... .. ......
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222 3 99 8 111 0 66 3 55 6 9 777 8 66 1 44 444444444444 5555 22 555555
consensus : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTCCATG-CNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
Reference ( family-2448 ) : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTCCACG-CNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
gi|1 : ACCTGATAGATCCCGAATCAGG---------------------TCTATAAACGACCC-----------AT-----------G-------A-AAA--AGCAGGGAATTCTATG-AATG--TCCCA-CAATTCATAGCAATTGAA--CGCTCACTAAACTGTGACGTCATTCAAACTTTCTGTTGAAGCAACTGACCAATCAACGTACTCAAATGTGGCTTCTTCCCAACATTGCTAATTAACAGACCCAATCGG----AAAAGATGGATCCATT------CTATA
gi|10 : ga-----------G-------A-AAA--TGTTTGGAATTCCATA-ACTG--TCCCG-TGATTCATTGCCATTGta
gi|11 : tttcccacttcaggtctgttatatccagaaCATCATTCAA-CTTTCA-CTAAAGCAATTGACT-----------TCAAAT-----T--TT------ACTGCTATGTGATGGACCCAAGCAAT---GAGTGCC--GTTCATT------CTACcgcgtcatatgctcgatgaccaatcagcgtgtttgta
gi|12 : ATCTGCTAAACC------------------------T-----------CA-----------AT-----------G-------A-AAA--AGCAGGGCATTCCAGA-CCTG--TCCCA-CAATTCAAAGCTCTTGAA--TGCTT
gi|13 : aaATCTTTCGGATCGGG---------------------T-----------CA-----------GTTTTACCGCATTG-------A-AGACAATGAAGAAATCCAATA-CATG--TCCCA-CAATTCAt
gi|14 : TGAA--CGCTAACTAAACTATGACGTCATTCAAACTTTCA-CTGAAGCAACTGACCAATCAACGTGC
gi|15 : CTGAAATCTCCCGAGTCAAG---------------------T-----------CT-----------GT-----------C-------A-GA----GCAGGGAATTCCACA-CCTG--TCGCA-CAGTTCACAGCcta
gi|16 : ATTGCTATGAAACGGACTCACTCGGTCGAGAGAGCCGGGTCCACT------CAACAGACT
gi|17 : TCAAATGTGGCT--TTACCAACATTGCTGTTTAACGGACCCAGTa
gi|18 : CTATTTAACGAATCTAATTGG----GACAGCTGTATCCGTCACGTGACTACAAACTgttcagtatgagt
gi|2 : ACCGGATATCTCCCGAATCAGG---------------------T-----------CT-----------ATTAACCCACAATG-------A-AAA--AGCAGGGAATTCCATG-CATG--TCGCA-CCACTCATAGCAAATGAA--CGCTTACTGAACTGTAACGTCATTCAAACTTTCAGTTTAAACAAC-GACCAATCAACGTCCTCTAATATGGCT--TTCCCAACATTACTATTTAACAGACCCAATCAG----TAGA-----GTTCGTT------CTACAGACa
gi|21 : gaCCGAACCGG----GAGAGCTGG----GTT------CTACAGAC
gi|4 : tctatcctagaatcttatatctcATCTGATATCTCCCGAATCAGG---------------------T-----------CA-----------AT-----------T-------A-AAA--AGCAGGGACTTCTATT-CCTG--TCCCA-CAATTCATAGCAGTTGAA--CGCTTACTTAACTGTGACGTAAT-CAAACTTTCAGTTGAAACAACTGACAAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGATCCAATCGG----GAGAGCTGGGTCCGTA------CTACAGACT
gi|5 : -----------AT-----------G-------A-AAAT-AGGAGGGAATTCTTTG-CATA--CCCCA-CAATTGATAGCAATTGGA--CGCTTACTAAACTGTGACGTAATTGAAACTTTCC-CTGAAGCAACTGAGCAATCAACATGCTCAAATACGGCT--TTTCCTGCATTTCTATTTAACATACCCAATCGG----GAGAGTTGGGTCCAGT------CTACA-ACT
gi|6 : tgtgacaagatcaatataagatTCTCCCAAATCAGG---------------------T-----------CTGATCAACTCCAAT-----------G-------A-AAA--GGAAGGGAATTCTATA-TCTG--TCCCA-CAATTCATAGCTATTAAA--CGCCAATCAAAATGTTGCGT-----------TCGG--AAAGCAACTGACCAATCAACGTGCTTTAAAGCG------------CATTGCTATGCAACAGACCCACGCGG----GAGACCTGTGTCTGTT------CTACAGa
gi|7 : ACCTGATATCTCCCGAATCAGG---------------------T-----------CT-----------AT-----------T-------A-A------C------CTCCA----ATG--AAACAGCAATTCATAGCAACTGAA--CGCTTACTTAACTTTGACGTCATTCAAACTTTCAGTTGAAGCAACTGACCAA---------TCAAATGTG--------------CTGCTATTTAACGGACCCAATCGA----GA-----------GTT------CTACAGACtc
gi|8 : ccaagaCCTGATATCTCACGAATCAGGGATAGTACCCCACCCCTCACTC-----------CA-----------AT-----------GGA-----A-AAA--AGGAGGGAATTCTATG-CCTG--TTTCA-CAATTCGTGGCAGTTGAA--CGCTTACTAAAGTATGACGCCATTCTAACTTGC-CCTGAAGCAATTGACTTATCAACGTGCACAA
gi|9 : acACGTGACATCTTCCAATTCAGG---------------------TATA--------CC-----------AT-----------ACGTTCATATAAA--AGCATGTAATTCGCCGTCGTGAGTCCTA-CAATTCATAGCACTTTAATGCGTTTAC-AAATTATAGTTTTGTACAAAGT----G-TAAAGCAAC--AC--ATCCACGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TATATATAACCTGATGTCATCAGAATCAGGTCTATTAGCCCCTAATCAAGCAG
Unaligned ( gi|20 ): CAAGAAACGTATTTCTTCCAAATCGAGTCTATTTACCCAAATACAGAAACCAG
Unaligned ( gi|22 ): CTATACATAGAACAAGATATCTCCCGAATTAAGTTTATTAACGC
Alignments
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999 111 111111111111 1111 111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000 3 77 44 5 1 44 3 55 1 0 888 0 11 0 11 444444444444 2222 33 111111
lowQualScore : ................................................................... . .. .. . . .. . .. . . ... . .. . .. ............ .... .. ......
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222 3 99 66 0 0 66 3 55 6 9 777 8 66 1 44 444444444444 5555 22 555555
consensus : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
Reference ( family-2448 ) : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
gi|1 : ACCTGATAGATCCCGAATCAGG---------------------TCTATAAACGACCC-----------AT-----------G-------A-AAA--AGCAGGGAATTC--TATGAATG--TCCCA-CAATTCATAGCAATTGAA--CGCTCACTAAACTGTGACGTCATTCAAACTTTCTGTTGAAGCAACTGACCAATCAACGTACTCAAATGTGGCTTCTTCCCAACATTGCTAATTAACAGACCCAATCGG----AAAAGATGGATCCATT------CTATA
gi|10 : ga-----------G-------A-AAA--TGTTTGGAATTC--CATAACTG--TCCCG-TGATTCATTGCCATTGta
gi|11 : tttcccacttcaggtctgttatatccagaaCATCATTCAA-CTTTCA-CTAAAGCAATTGACT-----------TCAAAT-----T--TT------ACTGCTATGTGATGGACCCAAGCAAT---GAGTGCC--GTTCATT------CTACcgcgtcatatgctcgatgaccaatcagcgtgtttgta
gi|12 : ATCTGCTAAACC------------------------T-----------CA-----------AT-----------G-------A-AAA--AGCAGGGCATTC--CAGACCTG--TCCCA-CAATTCAAAGCTCTTGAA--TGCTT
gi|13 : aaATCTTTCGGATCGGG---------------------T-----------CA-----------GTTTTACCGCATTG-------A-AGACAATGAAGAAATCC--AATACATG--TCCCA-CAATTCAt
gi|14 : TGAA--CGCTAACTAAACTATGACGTCATTCAAACTTTCA-CTGAAGCAACTGACCAATCAACGTGC
gi|15 : CTGAAATCTCCCGAGTCAAG---------------------T-----------CT-----------GT-----------C-------A-GA----GCAGGGAATTC--CACACCTG--TCGCA-CAGTTCACAGCcta
gi|16 : ATTGCTATGAAACGGACTCACTCGGTCGAGAGAGCCGGGTCCACT------CAACAGACT
gi|17 : TCAAATGTGGCT--TTACCAACATTGCTGTTTAACGGACCCAGTa
gi|18 : CTATTTAACGAATCTAATTGG----GACAGCTGTATCCGTCACGTGACTACAAACTgttcagtatgagt
gi|2 : ACCGGATATCTCCCGAATCAGG---------------------T-----------CT-----------ATTAACCCACAATG-------A-AAA--AGCAGGGAATTC--CATGCATG--TCGCA-CCACTCATAGCAAATGAA--CGCTTACTGAACTGTAACGTCATTCAAACTTTCAGTTTAAACAAC-GACCAATCAACGTCCTCTAATATGGCT--TTCCCAACATTACTATTTAACAGACCCAATCAG----TAGA-----GTTCGTT------CTACAGACa
gi|21 : gaCCGAACCGG----GAGAGCTGG----GTT------CTACAGAC
gi|4 : tctatcctagaatcttatatctcATCTGATATCTCCCGAATCAGG---------------------T-----------CA-----------AT-----------T-------A-AAA--AGCAGGGACTTC--TATTCCTG--TCCCA-CAATTCATAGCAGTTGAA--CGCTTACTTAACTGTGACGTAAT-CAAACTTTCAGTTGAAACAACTGACAAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGATCCAATCGG----GAGAGCTGGGTCCGTA------CTACAGACT
gi|5 : -----------AT-----------G-------A-AAAT-AGGAGGGAATTC--TTTGCATA--CCCCA-CAATTGATAGCAATTGGA--CGCTTACTAAACTGTGACGTAATTGAAACTTTCC-CTGAAGCAACTGAGCAATCAACATGCTCAAATACGGCT--TTTCCTGCATTTCTATTTAACATACCCAATCGG----GAGAGTTGGGTCCAGT------CTACA-ACT
gi|6 : tgtgacaagatcaatataagatTCTCCCAAATCAGG---------------------T-----------CTGATCAACTCCAAT-----------G-------A-AAA--GGAAGGGAATTC--TATATCTG--TCCCA-CAATTCATAGCTATTAAA--CGCCAATCAAAATGTTGCGT-----------TCGG--AAAGCAACTGACCAATCAACGTGCTTTAAAGCG------------CATTGCTATGCAACAGACCCACGCGG----GAGACCTGTGTCTGTT------CTACAGa
gi|7 : ACCTGATATCTCCCGAATCAGG---------------------T-----------CT-----------AT-----------T-------A-A------C------CTC--CA---ATG--AAACAGCAATTCATAGCAACTGAA--CGCTTACTTAACTTTGACGTCATTCAAACTTTCAGTTGAAGCAACTGACCAA---------TCAAATGTG--------------CTGCTATTTAACGGACCCAATCGA----GA-----------GTT------CTACAGACtc
gi|8 : ccaagaCCTGATATCTCACGAATCAGGGATAGTACCCCACCCCTCACTC-----------CA-----------AT-----------GGA-----A-AAA--AGGAGGGAATTC--TATGCCTG--TTTCA-CAATTCGTGGCAGTTGAA--CGCTTACTAAAGTATGACGCCATTCTAACTTGC-CCTGAAGCAATTGACTTATCAACGTGCACAA
gi|9 : acACGTGACATCTTCCAATTCAGG---------------------TATA--------CC-----------AT-----------ACGTTCATATAAA--AGCATGTAATTCGCCGT-CGTGAGTCCTA-CAATTCATAGCACTTTAATGCGTTTAC-AAATTATAGTTTTGTACAAAGT----G-TAAAGCAAC--AC--ATCCACGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TATATATAACCTGATGTCATCAGAATCAGGTCTATTAGCCCCTAATCAAGCAG
Unaligned ( gi|20 ): CAAGAAACGTATTTCTTCCAAATCGAGTCTATTTACCCAAATACAGAAACCAG
Unaligned ( gi|22 ): CTATACATAGAACAAGATATCTCCCGAATTAAGTTTATTAACGC
Alignments
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999 111 111111111111 1111 111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000 3 77 44 5 1 44 3 55 1 0 888 0 11 0 11 444444444444 2222 33 111111
lowQualScore : ................................................................... . .. .. . . .. . .. . . ... . .. . .. ............ .... .. ......
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222 3 99 66 0 0 66 3 55 6 9 777 8 66 1 44 444444444444 5555 22 555555
consensus : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
Reference ( family-2448 ) : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
gi|1 : ACCTGATAGATCCCGAATCAGG---------------------TCTATAAACGACCC-----------AT-----------G-------A-AAA--AGCAGGGAATTC--TATGAATG--TCCCA-CAATTCATAGCAATTGAA--CGCTCACTAAACTGTGACGTCATTCAAACTTTCTGTTGAAGCAACTGACCAATCAACGTACTCAAATGTGGCTTCTTCCCAACATTGCTAATTAACAGACCCAATCGG----AAAAGATGGATCCATT------CTATA
gi|10 : ga-----------G-------A-AAA--TGTTTGGAATTC--CATAACTG--TCCCG-TGATTCATTGCCATTGta
gi|11 : tttcccacttcaggtctgttatatccagaaCATCATTCAA-CTTTCA-CTAAAGCAATTGACT-----------TCAAAT-----T--TT------ACTGCTATGTGATGGACCCAAGCAAT---GAGTGCC--GTTCATT------CTACcgcgtcatatgctcgatgaccaatcagcgtgtttgta
gi|12 : ATCTGCTAAACC------------------------T-----------CA-----------AT-----------G-------A-AAA--AGCAGGGCATTC--CAGACCTG--TCCCA-CAATTCAAAGCTCTTGAA--TGCTT
gi|13 : aaATCTTTCGGATCGGG---------------------T-----------CA-----------GTTTTACCGCATTG-------A-AGACAATGAAGAAATCC--AATACATG--TCCCA-CAATTCAt
gi|14 : TGAA--CGCTAACTAAACTATGACGTCATTCAAACTTTCA-CTGAAGCAACTGACCAATCAACGTGC
gi|15 : CTGAAATCTCCCGAGTCAAG---------------------T-----------CT-----------GT-----------C-------A-GA----GCAGGGAATTC--CACACCTG--TCGCA-CAGTTCACAGCcta
gi|16 : ATTGCTATGAAACGGACTCACTCGGTCGAGAGAGCCGGGTCCACT------CAACAGACT
gi|17 : TCAAATGTGGCT--TTACCAACATTGCTGTTTAACGGACCCAGTa
gi|18 : CTATTTAACGAATCTAATTGG----GACAGCTGTATCCGTCACGTGACTACAAACTgttcagtatgagt
gi|2 : ACCGGATATCTCCCGAATCAGG---------------------T-----------CT-----------ATTAACCCACAATG-------A-AAA--AGCAGGGAATTC--CATGCATG--TCGCA-CCACTCATAGCAAATGAA--CGCTTACTGAACTGTAACGTCATTCAAACTTTCAGTTTAAACAAC-GACCAATCAACGTCCTCTAATATGGCT--TTCCCAACATTACTATTTAACAGACCCAATCAG----TAGA-----GTTCGTT------CTACAGACa
gi|21 : gaCCGAACCGG----GAGAGCTGG----GTT------CTACAGAC
gi|4 : tctatcctagaatcttatatctcATCTGATATCTCCCGAATCAGG---------------------T-----------CA-----------AT-----------T-------A-AAA--AGCAGGGACTTC--TATTCCTG--TCCCA-CAATTCATAGCAGTTGAA--CGCTTACTTAACTGTGACGTAAT-CAAACTTTCAGTTGAAACAACTGACAAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGATCCAATCGG----GAGAGCTGGGTCCGTA------CTACAGACT
gi|5 : -----------AT-----------G-------A-AAAT-AGGAGGGAATTC--TTTGCATA--CCCCA-CAATTGATAGCAATTGGA--CGCTTACTAAACTGTGACGTAATTGAAACTTTCC-CTGAAGCAACTGAGCAATCAACATGCTCAAATACGGCT--TTTCCTGCATTTCTATTTAACATACCCAATCGG----GAGAGTTGGGTCCAGT------CTACA-ACT
gi|6 : tgtgacaagatcaatataagatTCTCCCAAATCAGG---------------------T-----------CTGATCAACTCCAAT-----------G-------A-AAA--GGAAGGGAATTC--TATATCTG--TCCCA-CAATTCATAGCTATTAAA--CGCCAATCAAAATGTTGCGT-----------TCGG--AAAGCAACTGACCAATCAACGTGCTTTAAAGCG------------CATTGCTATGCAACAGACCCACGCGG----GAGACCTGTGTCTGTT------CTACAGa
gi|7 : ACCTGATATCTCCCGAATCAGG---------------------T-----------CT-----------AT-----------T-------A-A------C------CTC--CA---ATG--AAACAGCAATTCATAGCAACTGAA--CGCTTACTTAACTTTGACGTCATTCAAACTTTCAGTTGAAGCAACTGACCAA---------TCAAATGTG--------------CTGCTATTTAACGGACCCAATCGA----GA-----------GTT------CTACAGACtc
gi|8 : ccaagaCCTGATATCTCACGAATCAGGGATAGTACCCCACCCCTCACTC-----------CA-----------AT-----------GGA-----A-AAA--AGGAGGGAATTC--TATGCCTG--TTTCA-CAATTCGTGGCAGTTGAA--CGCTTACTAAAGTATGACGCCATTCTAACTTGC-CCTGAAGCAATTGACTTATCAACGTGCACAA
gi|9 : acACGTGACATCTTCCAATTCAGG---------------------TATA--------CC-----------AT-----------ACGTTCATATAAA--AGCATGTAATTCGCCGT-CGTGAGTCCTA-CAATTCATAGCACTTTAATGCGTTTAC-AAATTATAGTTTTGTACAAAGT----G-TAAAGCAAC--AC--ATCCACGT
blockSeqs : GATAGTACCCCACCCCTCACTCCAATGGA T CA GC A C AG G TG C AGT CA GT GCTTTACCAA TCGA GG ACGTGA
blockSeqs : TCAGTTTTACCGCATTG . T . A C . . . C AGT CA AT GCTTTCCCAA T TA .
blockSeqs : TCTATTAACCCACAATG . . . A A . . . C AGT AA GC GCTTTCCCAA . GG .
blockSeqs : TCTGATCAACTCCAATG . . . A C . . . A AC CA AC GCTTTTCCTG . GG .
blockSeqs : TATACCATACGTTCAT . . . G A . . . A AC CA GC TTT . TG .
blockSeqs : TCAATG . . . T C . . . C CC CA GT . . G .
blockSeqs : TCTGTC . . . G A . . . C GG TT . . . G .
blockSeqs : TCAATT . . . A C . . . T CC T . G .
blockSeqs : TCTATT . . . G A . . . . G . . . .
blockSeqs : . . . . C . .
blockSeqs : . . . . G . .
blockSeqCons : NC* GCTTTCCCAA**
originalCons : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCAGCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
finalCons : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTCNC-TGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCTTTCCCAA--CATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TATATATAACCTGATGTCATCAGAATCAGGTCTATTAGCCCCTAATCAAGCAG
Unaligned ( gi|20 ): CAAGAAACGTATTTCTTCCAAATCGAGTCTATTTACCCAAATACAGAAACCAG
Unaligned ( gi|22 ): CTATACATAGAACAAGATATCTCCCGAATTAAGTTTATTAACGC
Alignments
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999 222 111111111111 1111 111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000 3 77 44 5 1 44 3 55 111 0 11 0 11 444444444444 2222 33 111111
lowQualScore : ................................................................... . .. .. . . .. . .. ... . .. . .. ............ .... .. ......
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222 3 99 66 0 0 66 3 55 222 8 66 1 44 444444444444 5555 22 555555
consensus : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTC-GCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
Reference ( family-2448 ) : ACCTGATATCTCCCGAATCAGG---------------------T-----------CN-----------AT-----------G-------A-AAA--AGCAGGGAATTC--CATGCNTG--TCCCA-CAATTCATAGCAATTGAA--CGCTTACTAAACTGTGACGTCATTCAAACTTTC-NCTGAAGCAACTGACCAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGACCCAATCGG----GAGAGCTGGGTCCGTT------CTACAGACT
gi|1 : ACCTGATAGATCCCGAATCAGG---------------------TCTATAAACGACCC-----------AT-----------G-------A-AAA--AGCAGGGAATTC--TATGAATG--TCCCA-CAATTCATAGCAATTGAA--CGCTCACTAAACTGTGACGTCATTCAAACTTTCTGTTGAAGCAACTGACCAATCAACGTACTCAAATGTGGCTTCTTCCCAACATTGCTAATTAACAGACCCAATCGG----AAAAGATGGATCCATT------CTATA
gi|10 : ga-----------G-------A-AAA--TGTTTGGAATTC--CATAACTG--TCCCG-TGATTCATTGCCATTGta
gi|11 : tttcccacttcaggtctgttatatccagaaCATCATTCAA-CTTTC-ACTAAAGCAATTGACT-----------TCAAAT-----T--TT------ACTGCTATGTGATGGACCCAAGCAAT---GAGTGCC--GTTCATT------CTACcgcgtcatatgctcgatgaccaatcagcgtgtttgta
gi|12 : ATCTGCTAAACC------------------------T-----------CA-----------AT-----------G-------A-AAA--AGCAGGGCATTC--CAGACCTG--TCCCA-CAATTCAAAGCTCTTGAA--TGCTT
gi|13 : aaATCTTTCGGATCGGG---------------------T-----------CA-----------GTTTTACCGCATTG-------A-AGACAATGAAGAAATCC--AATACATG--TCCCA-CAATTCAt
gi|14 : TGAA--CGCTAACTAAACTATGACGTCATTCAAACTTTC-ACTGAAGCAACTGACCAATCAACGTGC
gi|15 : CTGAAATCTCCCGAGTCAAG---------------------T-----------CT-----------GT-----------C-------A-GA----GCAGGGAATTC--CACACCTG--TCGCA-CAGTTCACAGCcta
gi|16 : ATTGCTATGAAACGGACTCACTCGGTCGAGAGAGCCGGGTCCACT------CAACAGACT
gi|17 : TCAAATGTGGCT--TTACCAACATTGCTGTTTAACGGACCCAGTa
gi|18 : CTATTTAACGAATCTAATTGG----GACAGCTGTATCCGTCACGTGACTACAAACTgttcagtatgagt
gi|2 : ACCGGATATCTCCCGAATCAGG---------------------T-----------CT-----------ATTAACCCACAATG-------A-AAA--AGCAGGGAATTC--CATGCATG--TCGCA-CCACTCATAGCAAATGAA--CGCTTACTGAACTGTAACGTCATTCAAACTTTCAGTTTAAACAAC-GACCAATCAACGTCCTCTAATATGGCT--TTCCCAACATTACTATTTAACAGACCCAATCAG----TAGA-----GTTCGTT------CTACAGACa
gi|21 : gaCCGAACCGG----GAGAGCTGG----GTT------CTACAGAC
gi|4 : tctatcctagaatcttatatctcATCTGATATCTCCCGAATCAGG---------------------T-----------CA-----------AT-----------T-------A-AAA--AGCAGGGACTTC--TATTCCTG--TCCCA-CAATTCATAGCAGTTGAA--CGCTTACTTAACTGTGACGTAA-TCAAACTTTCAGTTGAAACAACTGACAAATCAACGTGCTCAAATGCGGCT--TTCCCAACATTGCTATTTAACGGATCCAATCGG----GAGAGCTGGGTCCGTA------CTACAGACT
gi|5 : -----------AT-----------G-------A-AAAT-AGGAGGGAATTC--TTTGCATA--CCCCA-CAATTGATAGCAATTGGA--CGCTTACTAAACTGTGACGTAATTGAAACTTTC-CCTGAAGCAACTGAGCAATCAACATGCTCAAATACGGCT--TTTCCTGCATTTCTATTTAACATACCCAATCGG----GAGAGTTGGGTCCAGT------CTACA-ACT
gi|6 : tgtgacaagatcaatataagatTCTCCCAAATCAGG---------------------T-----------CTGATCAACTCCAAT-----------G-------A-AAA--GGAAGGGAATTC--TATATCTG--TCCCA-CAATTCATAGCTATTAAA--CGCCAATCAAAATGTTGCG---TTCGGA----------AAGCAACTGACCAATCAACGTGCTTTAAAGCG------------CATTGCTATGCAACAGACCCACGCGG----GAGACCTGTGTCTGTT------CTACAGa
gi|7 : ACCTGATATCTCCCGAATCAGG---------------------T-----------CT-----------AT-----------T-------A-A------C------CTC--CA---ATG--AAACAGCAATTCATAGCAACTGAA--CGCTTACTTAACTTTGACGTCATTCAAACTTTCAGTTGAAGCAACTGACCAA---------TCAAATGTG--------------CTGCTATTTAACGGACCCAATCGA----GA-----------GTT------CTACAGACtc
gi|8 : ccaagaCCTGATATCTCACGAATCAGGGATAGTACCCCACCCCTCACTC-----------CA-----------AT-----------GGA-----A-AAA--AGGAGGGAATTC--TATGCCTG--TTTCA-CAATTCGTGGCAGTTGAA--CGCTTACTAAAGTATGACGCCATTCTAACTTGC-CCTGAAGCAATTGACTTATCAACGTGCACAA
gi|9 : acACGTGACATCTTCCAATTCAGG---------------------TATA--------CC-----------AT-----------ACGTTCATATAAA--AGCATGTAATTCGCCGT-CGTGAGTCCTA-CAATTCATAGCACTTTAATGCGTTTAC-AAATTATAGTTTTGTACAAAGT-----GTAAAGCAAC--AC--ATCCACGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TATATATAACCTGATGTCATCAGAATCAGGTCTATTAGCCCCTAATCAAGCAG
Unaligned ( gi|20 ): CAAGAAACGTATTTCTTCCAAATCGAGTCTATTTACCCAAATACAGAAACCAG
Unaligned ( gi|22 ): CTATACATAGAACAAGATATCTCCCGAATTAAGTTTATTAACGC