lowQualScore : 2222 3333333333 111111111111 222222 1 11 11111 111111 88888888888888888888888888888888888 222222222 2222222 1 11 1 666666666666666666666666666666666666666666666666 33333333 1111 222222222 33333333333333 1111111 11 5555555555555555555555555 1 3333333 11 1 222222222 1 4 1
lowQualScore : 4 1 0000 66 1 2 5555555555 5 888888888888 1 7 111111 0 9 66 7 66 7777 8 55555 888 222222 5 44444444444444444444444444444444444 22 888888888 1111111 7 5 77 4 1 4 4 88 99 66 1 3 1 3 999999999999999999999999999999999999999999999999 88888888 1 4444 1 6 888888888 6 99999999999999 0000000 55 7777777777777777777777777 5 5 1 1 9 0000000 33 6 66 3 5 1 5 1 3 111111111 6 6 66 3 6 0 5 6
lowQualScore : . . .... .. . . .......... . ............ . . ...... . . .. . .. .... . ..... ... ...... . ................................... .. ......... ....... . . .. . . . . .. .. .. . . . . ................................................ ........ . .... . . ......... . .............. ....... .. ......................... . . . . . ....... .. . .. . . . . . . ......... . . .. . . . . .
lowQualScore : 7 7 0000 99 1 0 4444444444 7 222222222222 7 1 777777 1 3 99 0 99 1111 2 88888 888 888888 0 77777777777777777777777777777777777 00 444444444 1111111 1 2 11 4 0 7 0 33 22 99 4 5 0 3 333333333333333333333333333333333333333333333333 00000000 0 7777 0 7 222222222 7 22222222222222 8888888 88 8888888888888888888888888 0 4 9 7 3 0000000 44 6 99 4 0 7 7 4 9 444444444 0 2 99 3 0 0 0 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TAN--T-TT-GTGAA--CGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATC--TTAACTTCCATTCATCTC-AGGAATA--CAAATC----AAA---A----T-TCT-TACA-TGCAAAA--TTA--AAATGT--CGTCATC--AAAACGA------TA-CCATTCCCA--GCAATTTGTGTTTAAAATCGT-TGA-AGTACTTNTGATT-ACAAAATNTGTATACTGCAG-CT--AAAATAA-GACAAATTA--CGA-TA-ATTG--TTC----CT-TCA-AACN---TT-AAT---ATTTTTAATTCAAGATC-CAANATTGCGT--GATCGAAAC-ATG--TTT---AAA-CA--------------TCTAAGNTT--ACATA-CAAC----TTACAGTTNATGT--ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATN-ATTAATC--CTTCGT-GTGCTATTTTATCAACATTTAGTCA--GG-----AGATGCAAGTTTCCTATCCT--TCTATATAAGTCCTTGAAGTAAACCAAAA
Reference ( gi|1 ) : TAATAAATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAG--T-TT-GTGAA--CATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATC--TTAACTGCCATTCATCTC-CGGAACA--CAGATC----GAA---A----T-TCT-TACACTGCAAAA--TTA--AAATGTCATGTCATT--AAAACAA------TG-CCATTCCCA--GAAGTTTGTGTTTTAAATTGT-TGA-AGTACTTGTGATT-ACAAAATTGGTATACTGCAG-CT--AAAATAACGACAAATTA--CGA-TA-ATTG--TTC----TT-TCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-CAAGATTGCGT--GATCGAAAC-ATG--TTT---AAA-CA--------------TCTAAGATT--ATATA-TAAC----TTAGAGTTAATGT--ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATT-ATGAATC--CTTCGT-GTGTTGTTTCATCAACATTTAGTCA--GC-----AGATGCAAGTTTTCTTTCCT--TCTATACAAGTCTTTGAA-TACATCAAAAATA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAA--T-TTTGTAAG--CGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTC--TTAACTTCCATTCATCTC-AGGAACA--CAAATC----AAA---A----T-TCT-TACATTGCAGA---CTG--AAAT----TGTCATC--AAACCAG------TA-CTGTTCCCA--TAAATTTGTGTTAAAAATTGT-TGA-AGTACTTGTGATT-ACAAAATTTGTATATTACAG-CT--GAAATAACGACACATTA--CGA-TA-ATTT--TTC----CT-TCA-AACC---TC-AAT---ATTTTTAATTCAAGATC---ATTTTGCAT--GATCAAAAC-ATG--TTT---GAA-CA--------------TCTAAGTTA--AAATA-CAAC----TTGCAGTTGATGT--ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATT-ACGAATT--CTTCGT-TTGTTATTTCATCAACATTTAGTTA--GG-----AGATGCAAGTTTCCTATCCT--T
gi|18 : aatCAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAG--G-TT-g
gi|4 : cAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT-TT-GTG------------TATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATC--TCAATT-TTATTTATTTT-ATGAGTA--CAGTTC----ACATTTA----TGTCTATGCA-TACTAGA--CT------TACC----CAAC--AAAATGA------GA-TAATTCCCA--GTATTGTGTGCTTAAAATCAT-TGAGATTAT---TAATT-ACTCTATTTGTACACTGCCA-CC--AAAAT---GATAA--TA----A-TA-CTTG--TTTA---TT-TCACAATG---TT---T---ATCTTTAATTCAAAACC-----ATTTTGTAAGATCAAAACAACG----C---AAATCA--------------TTAAAGGTA--ACATA--AAC---------GTT----T--ACTTTTCACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATA-ATTAATCGATTTCGT-GC-TT-TTTTATTGTCATTCAGTTA--AG-----AGACAC-AGTTGCCTGTGCTTCTCTATATAA
gi|11 : agttatgcatatAGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GAT--G-TT-ATGAA--TGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATC--CTAACtt
gi|3 : ttgGACTTATATG----AGGAAAGAA--AAGCAACTGATTG---TGA--TGTT-ATGAA--CACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATC--TTAACTTTCTTTCATCTC-AGAAATA--CAAATA----AAA---A----T-TCT-TCTTTTGCACAA--T-A--GAATTT----TCTTC--AAAGTGA------GA-CCATTCCCA--GCAAATTGTGTTTAAAGCTGT-TGA-AGTACTTATGATT-ACAAAATGTGTATGCTGCAA-CTAAAAAATAAAGG-AAAGTA--C-------TTG--------------A-AATG---TT-A-----------AATTCAAGA-T-CAAT-TTGCTT--GTTTAAAAC-GTT--ATA---AAA-CA--------------TCTAAG-TT--AAATA-CACT----TTAGATTTTATGT--AAAAGAAATATGTTGCCTGTGAA--ATG-----TAAAT----------GATT-ATTAA-----TTTGTAATGCTATTTTATCAATGTTTAG-CA--GCTAGAGAGATGCAAGTTTCCTATCCT--TCTATATAAGTCCTTAAAGTAAACCAAAAatc
gi|8 : aGACTTATATA-------AAAGAATTGAGCAACTGACT------------T-G-GAAAGCACTGGGAT---CACACAAAATCTC------ATTTTTATTTC-----TC--TCAGTTTTCATTCATCTG-AGGAATA--CA---------AA---A------TAA-TAAAATACAAAAGCTTGCTAAATATAACTTCCTT--ACAA-AA------TGACCA-TACAA--GCAAATAGTG-TTCAAAATGT------ATGCTTGT--TT-ACtaatgcca
gi|4 : aAATTATATA----GAGAAGCAC--AGGCAACTGtgtcactgaacaaaaggcaattacttgaatgtatgt
gi|5 : agttatgcatataaggacttaaatattgaaaacaaaacacatatcaataagttttgtgtattcactcaaaatcccacacaatctcgttttcagttatctcaattttatttattttatgagtacagttcacatttatgtctatgcatactagacttacccaacaaaatgagataattcccagtattgtgtgcttaaaatcattgagattattaattactctatttgtacactgccaccaaaatgataataatacttgtttatttcacaatgtttatctttaattcaaaaccattttgtaagatcaaaacaacgcaaatcattaaaggtaacataaacgtttacttttcaccagttggcagtgaaatttgaaacatcaatttgccgaataattaatcgatttcgtgcttttttattgtcattcagttaagagacaGGAC--AGGCAA-TAATCGAGTTTT--T-TT-GTGTA--CACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCT-AGGGATC--CAAATCAAAAGAA---A----T-TCT-T----TGCAGGA--TGA--A---GTTTTGT-A-C--AAAACAATAGGCTTA-CCATTCCAA--GTTATTTGTG-TTAAAATCATGGGA-AATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACTAATAACAAAATATTTGA--A-ATT---TTA----CT-TCG-AACTGCGTT---T---TTTTTTAATTCAAGAT---GAATTTGAAT--GATCGAAAC-AT---TATCAAAAA-AA--------------ACAAAGTTT--ACATA-CAAC----TCGCATTTTATTT--ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTG-ATTAATT--CTTAGT-
gi|6 : TACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATG--TTCACTTCCATTCGCCCC-AGGAACA--CAAATC----AAA---A----T-TCT-TACACTGCAAAA--T-A--AAAT----TATCATC--AAATCAA------TA-CCATTCCTA--ACAATTTGTGTTTAAAATTGT-TGA-AGTGAATCTGATG-ACAAAATTTGTATACTGCAG-CT--AAGATAAAGACAAATTA--CGAGGA-ATT---TTC----CT-TCA-GACC---TCAAAC---ATGTTTA----AACATC-TAAGATTACAT--ttatactgatttatttttagctcgattgcgatgaaagc
gi|10 : gTATC--CTAGCTACCATTCATCTCGCGGAA-ATTCAAATA----AAA---AAATTT-TCC-T----TTC------TT----AATGTAAGATCTTTACAAAACAA------GT-CCATTCCCAGCGAA--TTGTGTacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|13 : ACTCCCATTCAACTC-AGAAATA--CAAATC----AAA---A----T-TCT-ggaaaac
gi|19 : T-TGA-AGTGCTTATGATT-TCAAAATGTGTATACTCCAACCT--AAActtgcttaaatgcaccaaacacatactg
gi|16 : GA-AGTACTTTTGATT-ACAAAATGTGTATACTGCAA-CT--AAAA
gi|21 : GA-AGTACTTGTGATT-ACAAAATGTGTATACTGaatcaagcgaagtactt
gi|7 : T-GCAAAAT-ATTATTCTCCA--CT--AAA-CAA-GACTAATTA--CAG-CATATTGCATGCAAAATTGTTA-AAGT---TG-AATGCAATTTTTTATATAAAATTACAAGATTTC------TTGAAAC-ATTACTTT---AAA-CAGTAAACTGCTATGTTTTAA-ATTCAACACAATAACAATCTTAG-GTTA-------CAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-GC-TTGCTATTTCATCAAAATTTAGACATGGC-------ATACACGTTga
gi|6 : ttttttcaaAAAC-ATG--TTT---AAA-CA--------------TCTAAGATT--ACATA-CAAC----TTACAGTTA-TGTTAAGA---AATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATA-ATGAATC--CTTCGT-GTGCT-TTTTATCAACATTTAGCCA--GG-----AGATACAAGTTTCCTGTCCT--TCTATACATGT
gi|9 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTAAATTATGTTTGA-ATATTTA-CCA---AATA-AATAATC--CTTTGT-GTGCTATTATATCAATATTTAGTCA--GG-----AGATGTAAGTTTCCTATCTT--TCTATATAAGACCTTG
gi|12 : aAATT--CTTCGC-GTGCTACTTTATCACCATTTAGTCA--AG-----AGATACAATATTCCTGTCCA--TTTATccaaagctaaatataaagcttatatgaactgacaacaca
gi|20 : tt-----AGATGCAAGTTTCCTATCCT--TCTATATAAGTCCTTGAga
gi|15 : -----AGTTGCAAGTTTCCTATCCT--CCTATATAAG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GTTAAAATATATTNNNNNNNNNNATAAAATAAGTCAATTGCCTGTGAATTTTGAATGATT
Unaligned ( gi|17 ): GATATGCAAGTTTCCTATCATTCTTATATAAGACCTTGCCACAAGTGAA
Alignments
lowQualScore : 2222 111111111 1111111 6666666666666666666666666666666666666666666666666666 111111 1 5555555555555555555 111111 2222222222222 2222222 1111 333333333 22222222 2222 2222222 11111 3333 11
lowQualScore : 0 1 0000 66 1 2 666666666 888 0 0 2 7777777 0 66 66 4 66 777 9999999999999999999999999999999999999999999999999999 4 4 1 222222 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 2222222222222 2 5555555 2222 1 0 5 666666666 5 00000000 1 6 5 3 3 0000 0 0 3 5 6 0 666666 4 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 2 1111 22
lowQualScore : . . .... .. . . ......... ... . . . ....... . .. .. . .. ... .................................................... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ....... .... . . . ......... . ........ . . . . . .... . . . . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... ..
lowQualScore : 7 7 0000 99 1 0 444444444 111 4 2 0 4444444 8 11 11 4 11 888 3333333333333333333333333333333333333333333333333333 4 4 7 888888 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 9999999999999 1 9999999 9999 6 4 7 333333333 7 33333333 9 6 7 0 0 0000 3 7 0 7 6 7 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 1 0000 55
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAA---A---------T-TCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAA-ACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGATC-CAANNTTGCATGATCGAAACA-TG--TTT---AAA-CA------T-CTAAGNTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANTTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-A-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAA---A---------T-TCT-TAC--A------T-GCAAAATTAAAATGTC--GTCATCAAA-ACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACN---TT-AAT---ATTTTTAATTCAAGATC-CAANATTGCGTGATCGAAACA-TG--TTT---AAA-CA------T-CTAAGNTT-ACATACAAC----TTACAGT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTG----AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAA---A---------T-TCT-TAC--AC-----T-GCAAAATTAAAATGTCATGTCATTAAA-ACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-CAAGATTGCGTGATCGAAACA-TG--TTT---AAA-CA------T-CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG----AA--TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAA---AAATTTTCCTT-TCT-TA---A------T-GTAAGAT--------C--TTTA-CAAA-ACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCG-----------A-A-ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAA---A---------T-TCT---C--T------T-GC----TT-AAATG------CACCAAACAC-ATA------Cga
gi|14 : T-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTtg
gi|15 : gttaaaatatattnnnnnnnnnnaCCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-C-A-ATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAA---A---------T-TCT-TAC--A------TTGCAGACTGAAA---TT--GTCATCAAA-CCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGATC---ATTTTGCATGATCAAAACA-TG--TTT---GAA-CA------T-CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTG----Ag
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTG
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGA-A-ATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAA---A---------T-TCT-T-CTTT------T-GCACAA-TAGAATTT----TCTTCAAA-GTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--CAAT-TTGCTTGTTTAAAACG-TT--ATA---AAA-CA------T-CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTA----AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-C-ACA-ATCTCGTTTTCAGTTATCTC--AATTTT-ATTTATTTTA--TGAGTAC-AGTT--CACATTTA---------TGTCTATGC--A------T-ACTAGACT----TACC----CAACAAA-ATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AGAT--TATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAACC---ATTTTGTAAGATCAAAACAACG--C-----AAATCA------T-TAAAGGTA-ACATA-AACGT--TTACTTT-TCAC------------CAGTTGGCAGTGAAATTTGAAACATCAATTTG-CCG---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTC-A-A-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAA---AGAAA-----T-TCT-T-----------T-GCAGGAT-GAAGTTTT--GT-A-CAAA-ACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT---GAATTTGAATGATCGAAACA-T---TATCAAAAA-AA------A-CAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-C-A-ATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAA---A---------T-TCT-TAC--AC-----T-GCAAAAT-AAAAT--T--ATCATCAAA-TCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACATC-TAAGATT-----------ACA-T-----------A-C------------AACTT-ACA---------------GT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACATGTttttagctcgattgcgatgaaagc
gi|7 : TTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTACAAGATTTC----TTGAAACA-TTACTTT---AAA-CAGTAAACTGCTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTT
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGAT-CACACAAAATCTCA-------------TTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAA---A---------------TAC--AAAAGCTT-GCTAAA-TATAACTTC--CTTA-CAAA-ATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 11111111111 111111111 333333333333 11 2222 1 1111111 1 55555555555555555555 111111 2222222222222 2222 111111111 11111111 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 11111111111 0 66 66 4 66 9999 777777777 4 222222222222 0 00 3 5 4444 0 2 7777777 0 0 0 5 1 1 4 77 66 0 5 7 1 00000000000000000000 444444 5 3333333333333 2 8888 22 3 5 888888888 5 66666666 5 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . ........... . .. .. . .. .... ......... . ............ . .. . . .... . . ....... . . . . . . . .. .. . . . . .................... ...... . ............. . .... .. . . ......... . ........ . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 66666666666 8 11 11 4 11 4444 888888888 4 111111111111 4 44 2 0 1111 2 6 4444444 2 8 7 7 0 0 0 11 11 1 7 1 6 33333333333333333333 333333 7 6666666666666 1 1111 00 9 7 999999999 7 99999999 9 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATC--TTAACTTCCATTCATCTCA--GGAATAC-AAAT--CA----AAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGA------TACCATTCCCAGCAATTTGTGTTTAAAATCGT-TGAAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTA--CG---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGATC--AAGNTTGCATGATCGAAAC-ATG--TTT---AAA-CA------T-CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAATTATC--TTAACTTCCATTCATCTCA--GGAATAC-AAAT--CA----AAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGA------TACCATTCCCAGCAATTTGTGTTTAAAATCGT-TGAAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTA--CG---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGATC-CAANNTTGCATGATCGAAAC-ATG--TTT---AAA-CA------T-CTAAGNTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATC--TTAACTGCCATTCATCTCC--GGAACAC-AGAT--CG----AAA---------TTCT-TACAC-----T--GCAAAATTAAAATGTCATGTCATTAAAACAA------TGCCATTCCCAGAAGTTTGTGTTTTAAATTGT-TGAAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTA--CG---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-CAAGATTGCGTGATCGAAAC-ATG--TTT---AAA-CA------T-CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATC--CTAGCTACCATTCATCTCGCGGAAATTC-AAAT--AA----AAAAATTTTCCTTTCT-TA-A------T--GTAAGAT--------C--TTTA-CAAAACAA------GTCCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATC--CTAACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CA----AAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : GAAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cT-TGAAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTC--TTAACTTCCATTCATCTCA--GGAACAC-AAAT--CA----AAA---------TTCT-TACA------TT-GCAGA-CTGAAAT-T---GTCATCAAACCAG------TACTGTTCCCATAAATTTGTGTTAAAAATTGT-TGAAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTA--CG---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGATC---ATTTTGCATGATCAAAAC-ATG--TTT---GAA-CA------T-CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : GAAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATC--TTAACTTTCTTTCATCTCA--GAAATAC-AAAT--AA----AAA---------TTCT-T-CT------TTTGCACAAT-AGAAT-TT---TCTTCAAAGTGA------GACCATTCCCAGCAAATTGTGTTTAAAGCTGT-TGAAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTA--C-------------------TTG--------A-AATG---TT-A-----------AATTCAAGATC---AATTTGCTTGTTTAAAAC-GTT--ATA---AAA-CA------T-CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATC--TCAA-TTTTATTTATTTTA--TGAGTAC-AGTT--CA----CAT---------TTATGTCTA------T--GC-ATACTAGACT-TA--CCCAACAAAATGA------GATAATTCCCAGTATTGTGTGCTTAAAATCAT-TGAG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAACC---ATTTTGTAAGATCAAAACAACG----C---AAATCA------T-TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA---------TTCT-T---------T--GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTG-TTAAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT---GAATTTGAATGATCGAAAC-AT---TATCAAAAA-AA------A-CAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATG--TTCACTTCCATTCGCCCCA--GGAACAC-AAAT--CA----AAA---------TTCT-TACAC-----T--GCAAAA-TAAAAT-T---ATCATCAAATCAA------TACCATTCCTAACAATTTGTGTTTAAAATTGT-TGAAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTA--CG---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACATC-TAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTT---AAA-CA------T-CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTA--CAGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTACAAGATTTC----TTGAAAC-ATTACTTT---AAA-CAGTAAACTGCTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGA-TCACACAAA-----------ATCTCATTTTTATTTCTC--TCAGTTTTCATTCATCTGA--GGAATACAAAATAATA----AAA--------------TACAAAAGCTT--GCTAAATATAACT-TC--CTTA-CAAAATG--------ACCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 1111111 33333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 2 7777777 0 66 66 4 66 88888888888888888888888888 5 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . . ....... . .. .. . .. .......................... . . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 0 4444444 8 11 11 4 11 11111111111111111111111111 0 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-A-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TAC--AC-----T-GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA---A------T-GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCG-----------A-A-ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-C-A-ATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--A------TTGCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGA-A-ATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CTTT------T-GCACAA-TAGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-C-ACA-ATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCT--A------T-GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTC-A-A-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T-----------T-GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-C-A-ATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--AC-----T-GCAAAAT-AAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGAT-CACACAAAATCTCA-------------TTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TAC--AAAAGCTT-GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 11111111111 333333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 11111111111 0 66 66 4 66 444444444444444444444444444 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . ........... . .. .. . .. ........................... . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 66666666666 8 11 11 4 11 111111111111111111111111111 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TACAC-----T--GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA-A------T--GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TACA------TT-GCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CT------TTTGCACAAT-AGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCTA------T--GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T---------T--GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TACAC-----T--GCAAAA-TAAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGA-TCACACAAA-----------ATCTCATTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TACAAAAGCTT--GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 1111111 33333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 2 7777777 0 66 66 4 66 88888888888888888888888888 5 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . . ....... . .. .. . .. .......................... . . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 0 4444444 8 11 11 4 11 11111111111111111111111111 0 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-A-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TAC--AC-----T-GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA---A------T-GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCG-----------A-A-ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-C-A-ATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--A------TTGCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGA-A-ATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CTTT------T-GCACAA-TAGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-C-ACA-ATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCT--A------T-GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTC-A-A-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T-----------T-GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-C-A-ATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--AC-----T-GCAAAAT-AAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGAT-CACACAAAATCTCA-------------TTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TAC--AAAAGCTT-GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 11111111111 333333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 11111111111 0 66 66 4 66 444444444444444444444444444 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . ........... . .. .. . .. ........................... . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 66666666666 8 11 11 4 11 111111111111111111111111111 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TACAC-----T--GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA-A------T--GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TACA------TT-GCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CT------TTTGCACAAT-AGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCTA------T--GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T---------T--GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TACAC-----T--GCAAAA-TAAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGA-TCACACAAA-----------ATCTCATTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TACAAAAGCTT--GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 1111111 33333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 2 7777777 0 66 66 4 66 88888888888888888888888888 5 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . . ....... . .. .. . .. .......................... . . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 0 4444444 8 11 11 4 11 11111111111111111111111111 0 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-A-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TAC--AC-----T-GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA---A------T-GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCG-----------A-A-ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-C-A-ATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--A------TTGCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGA-A-ATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CTTT------T-GCACAA-TAGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-C-ACA-ATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCT--A------T-GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTC-A-A-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T-----------T-GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-C-A-ATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--AC-----T-GCAAAAT-AAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGAT-CACACAAAATCTCA-------------TTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TAC--AAAAGCTT-GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 11111111111 333333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 11111111111 0 66 66 4 66 444444444444444444444444444 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . ........... . .. .. . .. ........................... . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 66666666666 8 11 11 4 11 111111111111111111111111111 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TACAC-----T--GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA-A------T--GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TACA------TT-GCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CT------TTTGCACAAT-AGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCTA------T--GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T---------T--GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TACAC-----T--GCAAAA-TAAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGA-TCACACAAA-----------ATCTCATTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TACAAAAGCTT--GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
Alignments
lowQualScore : 2222 111111111 1111111 33333333333333333333333333 11 2222 1 111111 1 5555555555555555555 111111 2222222222222 22222222 1111 222222222 1111 2222222 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 2 7777777 0 66 66 4 66 88888888888888888888888888 5 0 00 3 5 4444 0 2 3 444444 0 0 5 0 4 1 1 4 77 66 0 5 7 1 0000000000000000000 444444 5 3333333333333 2 11111111 3 5 4444 5 444444444 6 55 1 0 0 7777 1 5 5 666666 1 00 3333333 2 0 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . . ....... . .. .. . .. .......................... . . .. . . .... . . . ...... . . . . . . . . .. .. . . . . ................... ...... . ............. . ........ . . .... . ......... . .. . . . .... . . . ...... . .. ....... . . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 0 4444444 8 11 11 4 11 11111111111111111111111111 0 4 44 2 0 1111 2 6 0 444444 2 8 2 7 4 0 0 0 11 11 1 7 1 6 9999999999999999999 333333 7 6666666666666 1 33333333 9 7 0000 7 777777777 6 88 0 2 1 5555 0 0 9 666666 0 22 9999999 8 7 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-A-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TAC--AC-----T-GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CT--AAAAT-AACGACAAATTAC--G---------A-T----AATTGTTC-TTTCA-AACC---TT-AAT---ATCTTTAATTCAAGATT-C-AAGATTGCGTGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-C-A---AATTATGAA-TC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA---A------T-GTAAGAT--------C--TTTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCG-----------A-A-ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAA-TT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CT--AAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCT--AAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-C-A-ATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--A------TTGCAGA-CTGAAAT-T---GTCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CT--GAAAT-AACGACACATTAC--G---------A-T----AATTTTTC-CTTCA-AACC---TC-AAT---ATTTTTAATTCAAGAT--C-A-TTTTGCATGATCAAAAC-ATG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-C-A---AATTACGAA-TT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGA-A-ATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CTTT------T-GCACAA-TAGAAT-TT---TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAAAAAT-AA-AGGAAAGTAC---------------------TTG--------A-AATG---TT-A-----------AATTCAAGAT--C-AA-TTTGCTTGTTTAAAAC-GTT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT-----------------ATTAA------TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-C-ACA-ATCTCGTTTTCAGTTATCTC--AA-TTTTATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCT--A------T-GC-ATACTAGACT-TA--CCCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AG--ATTATTAATTACTCTATTTG-TACACTGCCA-CC--AAAAT----GATAA--TA-------------A-T----ACTTGTTTATTTCACAATG---TT---T---ATCTTTAATTCAAAAC--C--ATTTTGTAAGATCAAAACAACG----CAAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TC------------ACCAGTTGGCAGTGAAATTTGAAACATCAATTTGCC-G---AATAATTAA-TCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTC-A-A-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T-----------T-GCAGGATGAAGTT-TT--GT-A-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CT--GAACT-AATAACAAAATATTTG---------A------AATT-TTA-CTTCG-AACTGCGTT---T---TTTTTTAATTCAAGAT--G-AA-TTTGAATGATCGAAAC-ATT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTC-ACTGACTGATTAA-TT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-C-A-ATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TAC--AC-----T-GCAAAAT-AAAAT-T---ATCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CT--AAGATAAA-GACAAATTAC--G---------AGG----AATT-TTC-CTTCA-GACC---TCAAAC---ATGTTTA----AACAT--CTAAGATTACATttttagctcgattgcgatgaaagc
gi|6 : AAAC-ATG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCC-A---AATAATGAA-TC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAacaacttacagttatgttaagaaatcagctacctgtgaattatgaatgattaatttgccaaataatgaatccttcgtgtgctttttatcaacatttagccaggagatacaagtttcctgtccttctatacatgt
gi|7 : gtactcacgcaaagtctcgcaatatctcgttttcaattatgttcacttccattcgccccaggaacacaaatcaaaattcttacactgcaaaataaaattatcatcaaatcaataccattcctaacaatttgtgtttaaaattgttgaagtgaatctgatgacaaaatttgtatactgcagctaagataaagacaaattacgaggaattttccttcagacctcTTTTCAATGCAAAATAT--TATTCTCCA--CT--AAA-C-AA-GACTAATTAC--AGCATATTGCA-TGCAAAATTGTT------A-AAGT---TG-AATGCAATTTTTTATATAAAATTAC-AAGATTTC----TTGAAAC-ATTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTA-C-------TCGACAACTC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGAT-CACACAAAATCTCA-------------TTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TAC--AAAAGCTT-GCTAAATATAACT-TC--CTTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTA-CCA---AATAAATAA-TC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt
blockSeqs : T TATA TT A A CGAGTTTTT TGT A CAAT TT CG A AA AATTTTCCTTTCTTAA T CT A . CT T G GGCTTA G G T G A AC AA A C T AGCATATTGCATGCAA GTTTAT C TTGAATGCA T TACAAGA A A TACT T GTAAACTG T TT A ACAA N C N AAAAT T TCACTG T C GA C TTT A GTCC T CTAGA TC T A CCAC C
blockSeqs : T TT . G G TGAGATG AT A CGAA . . . . TACAAAAGCT . CT A . AC T T . A . A G . A . . T G TTGA TTTCC . TGCGTTT C CTAAGA T . GT . AAA T A A GT G . G ACAAG A CCG A . . C TA A . T . . . A CCA .
blockSeqs : T . . A C TGGTAGG AT A CACA . . . . TTCTTCTTT . TG C . TG A G . T . G T . G . . . A GAGG TTAC . CTCAAAC T CATT A . TA . T G A A . T . T AAAAG G CCA G . . T C A . T . . . T A .
blockSeqs : A . . A A TGAGAAT GT G TCAA . . . . TTATGTCTA . TA T . CC T G . T . G G . A . . . T GAT TTCC . CTCAAT G CAAT A . TA . T T T C . T . C ACAAG T CCA A . . C T A . T . . . T
blockSeqs : T . . C A TGTGATG G A CAAT . . . . GAAATTCTT . T A . G . T . T . A G . A . . . T AT GTT . GTTA T CATT A . GT . T A A C . T . T TACAT T CA C . . A T T . C . . . A
blockSeqs : . . . G A CAATAAG . . AA . . . . TTCTTACAC . T C . T . T . C . T T . G . . . . . G . GTTT . GAAT . . G . T T T C . G . T TAAG A C A . . C C G . A . . .
blockSeqs : . A . . . . . . . . TTCTTACA . T . . A . . . . . C A . G . . T A . A . . . C . . . . T T A . T . . .
blockSeqs : . . . . . C T . . . A . . . . A . . . . .
blockSeqs : T A . . . .
blockSeqCons : CC** GAT**************** GTTAC* NTCAAT******* CANT**** CCA****
originalCons : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TC--GTCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTAC--G---------A-T----AATTGTTC-CTTCA-AACC---TT-AAT---ATTTTTAATTCAAGAT--C-AAGNTTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTG-C-A---AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
finalCons : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-C-A-ATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TAC--A------T-GCAAAATTAAAAT-TCC--TCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CT--AAAAT-AA-GACAAATTACGAT----------------AATTGTTAC-TTCA-AACNTCAAT-------ATTTTTAATTCAAGATCANT----TTGCATGATCGAAAC-ATG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTGCCA----AATNATTAA-TC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Alignments
lowQualScore : 2222 111111111 11111111111 3333333333333333333333333333333333333333333333 1 111111 22222 2222222222222222222222222 33333333333 11111 11111 222222222 1111 111111 11111 1111 1
lowQualScore : 0 1 0000 66 1 2 222222222 888 0 0 11111111111 0 66 66 4 66 5555555555555555555555555555555555555555555555 2 3 444444 0 0 5 0 4 1 1 4 77 99999 5 0000000000000000000000000 5 11111111111 5 66666 22 66666 5 9999 0 5 444444444 6 55 1 0 0 7777 1 5 5 1 666666 1 00 000000 2 4 66 1 7777 1 9999 1 00000 55 4 1 8888 0
lowQualScore : . . .... .. . . ......... ... . . ........... . .. .. . .. .............................................. . . ...... . . . . . . . . .. ..... . ......................... . ........... . ..... .. ..... . .... . . ......... . .. . . . .... . . . . ...... . .. ...... . . .. . .... . .... . ..... .. . . .... .
lowQualScore : 7 7 0000 99 1 0 999999999 111 4 2 66666666666 8 11 11 4 11 4444444444444444444444444444444444444444444444 6 0 444444 2 8 2 7 4 0 0 0 11 11111 1 1111111111111111111111111 7 77777777777 7 00000 11 11111 7 1111 3 7 777777777 6 88 0 2 1 5555 0 0 9 4 666666 0 22 444444 8 4 11 9 6666 5 4444 0 00000 55 4 0 2222 0
consensus : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAA-ATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAAT-AAAATTNC---TCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CTAAAATAA-GACAAATTAC--GATA-ATTGT-T-AC-----T-TCA-AACNTTAAT---ATTTTT-AATTCAAGATC--ANTTTGCATGATC----GAAACA-TG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTGCCA---AATAATTAATC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
Reference ( family-2447 ) : NNNNNNATCAAGGACTTATATA----GAGAAGGAA--AGGCAACTGATCGA--TANGTT-GTGAACGCTCGCGTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAATTATCTT--AACTTCCATTCATCTCA--GGAATAC-AAAT--CAAAA---------TTCT-TACA------T--GCAAAATTAAAATTCC---TCATCAAAACGATA------CCATTCCCAGCAATTTGTGTTTAAAATCGTTG-AAGTACTTNTGATTACAAAATNTG-TATACTGCAG-CTAAAATAA-GACAAATTAC--GATA-ATTGT-T-AC-----T-TCA-AACNTCAAT---ATTTTT-AATTCAAGATC--ANTTTGCATGATC----GAAACA-TG--TTTAAA-CA------T--CTAAGTTT-ANATACAAC----TTACANT-TNATGT-ACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTGCCA---AATNATTAATC--CTTCG--T-GTGCTATTTTATCAACAT----TTAGTCAG-----GAGATGCAAGTTTCCTATCCT--TC-TATATAAGNCCTTGCCA-AAG-TAAACCAAAA
gi|1 : ATCAAGGAATTATATA----GAGAAGGAA--AGGCAACTGATTGA--TAGTTT-GTGAACATTGGCATATTCACGCAAAATCTCG-CAATATCTCGTTTTCAAATATCTT--AACTGCCATTCATCTCC--GGAACAC-AGAT--CGAAA---------TTCT-TACAC-----T--GCAAAATTAAAATGTCATGTCATTAAAACAATG------CCATTCCCAGAAGTTTGTGTTTTAAATTGTTG-AAGTACTTGTGATTACAAAATTGG-TATACTGCAG-CTAAAATAACGACAAATTAC--GATA-ATTGT-T-CT-----T-TCA-AACCTTAAT---ATCTTT-AATTCAAGATTCAAGATTGCGTGATC----GAAACA-TG--TTTAAA-CA------T--CTAAGATT-ATATATAAC----TTAGAGT-TAATGT-ACATTCAATCAGTTGCCTTTGAATTATGAATGATAAATTTG-CA---AATTATGAATC--CTTCG--T-GTGTTGTTTCATCAACAT----TTAGTCAG-----CAGATGCAAGTTTTCTTTCCT--TC-TATACAAGTCTTTG-----AA-TACATCAAAA
gi|10 : taataaTATCCT--AGCTACCATTCATCTCGCGGAAATTC-AAAT--AAAAAAATTTTCCTTTCT-TA-A------T--GTAAGAT-------CT---TTA-CAAAACAAGT------CCATTCCCAGCGAATTGTGTGGAAAAata
gi|11 : AGGACTTA-A-A----GAGAAGAAA--AATCAACTGATTGA--GATGTT-ATGAATGTTCACGTATTCATGCGAA-----------ATCTTGTTTTCAAATATCCT--AACATCc
gi|12 : ttgTTAATT--CTTCG--C-GTGCTACTTTATCACCAT----TTAGTCAA-----GAGATACAATATTCCTGTCCA--TT-TAT
gi|13 : ACTCCCATTCAACTCA--GAAATAC-AAAT--CAAAA---------TTCT-ga
gi|14 : GTTA-AAATATA-T----TNNNNNN-NNNNAT-AAAATAAGTCAATTGCCTGTGAATTTTGAATGATTcttgcttaaatgcaccaaacacatactg
gi|15 : CCATTTTA----CATGTCCTTGGTAGA-----GAGTTGCAAGTTTCCTATCCT--CC-TATATAAGACCT
gi|16 : G-AAGTACTTTTGATTACAAAATGTG-TATACTGCAA-CTAAAA
gi|17 : -----GATATGCAAGTTTCCTATCAT--TCTTATATAAGACCTTGCCACAAG-TGAAaatcaagcgaagtactt
gi|18 : CAAGGAATTATATA----GAAAAGGAA--AGGCAGCTGACTGG--TAGGTT-
gi|19 : cTTG-AAGTGCTTATGATTTCAAAATGTG-TATACTCCAACCTAAA
gi|2 : ATCAAGGAATTATATATATAGAGTAGGAA--AAGCACCTGATTGA--GAATTTTGTAAGCGCTTGCGTATTCCCACAAAATCTTG-CAATATCTCGTTTTCAATTGTCTT--AACTTCCATTCATCTCA--GGAACAC-AAAT--CAAAA---------TTCT-TACA------TT-GCAGA-CTGAAATTG----TCATCAAACCAGTA------CTGTTCCCATAAATTTGTGTTAAAAATTGTTG-AAGTACTTGTGATTACAAAATTTG-TATATTACAG-CTGAAATAACGACACATTAC--GATA-ATTTT-T-CC-----T-TCA-AACCTCAAT---ATTTTT-AATTCAAGATC--ATTTTGCATGATC----AAAACA-TG--TTTGAA-CA------T--CTAAGTTA-AAATACAAC----TTGCAGT-TGATGT-ACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATTTG-CA---AATTACGAATT--CTTCG--T-TTGTTATTTCATCAACAT----TTAGTTAG-----GAGATGCAAGTTTCCTATCCT--T
gi|20 : aatAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTTGg
gi|21 : G-AAGTACTTGTGATTACAAAATGTG-TATACTGa
gi|3 : GACTTATATG----AGGAAAGAA--AAGCAACTGATTGT--GATGTT-ATGAACACTCGCATATTCACTTAAA-TCTCA-CGAAATCTCATTTTCAGATATCTT--AACTTTCTTTCATCTCA--GAAATAC-AAAT--AAAAA---------TTCT-T-CT------TTTGCACAAT-AGAATTT----TCTTCAAAGTGAGA------CCATTCCCAGCAAATTGTGTTTAAAGCTGTTG-AAGTACTTATGATTACAAAATGTG-TATGCTGCAA-CTAAA--------AAATAAA--GGAA-A--G--T-AC-----T-TGA-AATGTTA------------AATTCAAGATC--AATTTGCTTGTTT----AAAACG-TT--ATAAAA-CA------T--CTAAG-TT-AAATACACT----TTAGATT-TTATGT-AAAAGAAATATGTTGCCTGTGAAATGTAAATGATT----------------ATTAA-----TTTG--TAATGCTATTTTATCAATGT----TTAG-CAGCTAGAGAGATGCAAGTTTCCTATCCT--TC-TATATAAGTCCTT---A-AAG-TAAACCAAAAga
gi|4 : aAAGGACTTAAATATT--GAAAACAAA--ACACA--T-ATCAA--TAAGTT---------TTGTGTATTCACTCAAAATCCCA-CACAATCTCGTTTTCAGTTATCTC--AATTTT-ATTTATTTTA--TGAGTAC-AGTT--CACAT---------TTATGTCTA------T--GCATA-CTAGACTTAC---CCAACAAAATGAGA------TAATTCCCAGTATTGTGTGCTTAAAATCATTG-AGAT--TATTAATTACTCTATTTG-TACACTGCCA-CCAAAAT---GATAA--TA----ATA-CTTGT-TTAT-----T-TCACAATGTT--T---ATCTTT-AATTCAAAACC--ATTTTGTAAGATC----AAAACAACG--C--AAATCA------T--TAAAGGTA-ACATA-AACGT--TTACTTT-TCAC------------CAGTTGGCAGTGAAATTTGAAACATCAATTTGCCG---AATAATTAATCGATTTC-----GTGCTTTTTTATTGTCAT----TCAGTTAA-----GAGACAC-AGTTGCCTGTGCTTCTC-TATATAAtaatgcca
gi|5 : agttatgcatatGGAC--AGGCAA-TAATCGAGTTTTTTT-GTGTACACTCACGTATTTACGCTAAATCTCGTCAA-ATCTCGTTTTAGATTATCTTTTAACTTCTATTCATCCTA--GGGATCC-AAAT--CAAAAGAAA-----TTCT-T---------T--GCAGGAT-GAAGTTTT---GTA-CAAAACAATAGGCTTACCATTCCAAGTTATTTGTGTT-AAAATCATGGGAAATAGCTCTGGTTAAAAAAAATGATATAATAAAG-CTGAACTAATAACAAAATATTTGA-A-ATT-T-T-AC-----T-TCG-AACTGCGTT---TTTTTTTAATTCAAGATG--AATTTGAATGATC----GAAACA-TT--ATCAAA-AA------AAACAAAGTTT-ACATACAAC----TCGCATT-TTATTT-ACAAGAAAGCAGTTGCCTGTGAAATTTAAATGTTTAATTTGTCACTGACTGATTAATT--CTTAGTTT-ATACTGATTTATtt
gi|6 : GTACTCACGCAAAGTCTCG-CAATATCTCGTTTTCAATTATGTT--CACTTCCATTCGCCCCA--GGAACAC-AAAT--CAAAA---------TTCT-TACAC-----T--GCAAAAT-AAAATTA----TCATCAAATCAATA------CCATTCCTAACAATTTGTGTTTAAAATTGTTG-AAGTGAATCTGATGACAAAATTTG-TATACTGCAG-CTA-----A-GATAAA------GACA-A--AT-T-AC-----G-AGG-AA------------TTTT-CCTTCA-GACC-------------TC-----AAACA-TG--TTTAAA-CA------T--CTAAGATT-ACATACAAC----TTACAGT-T-ATGT--TAAGAAATCAGCTACCTGTGAATTATGAATGATTAATTTGCCA---AATAATGAATC--CTTCG--T-GTGCT-TTTTATCAACAT----TTAGCCAG-----GAGATACAAGTTTCCTGTCCT--TC-TATACAttttagctcgattgcgatgaaagc
gi|7 : TTTTCAATGCAAAATAT--TATTCTCCA--CTAAA-CAA-GACTAATTAC--AGCATATTGCAT-GCAAAATTGTTA-AAGTTGAATGCAATTTTT-TATATAAAATT--A-----CAAGATTTCTTGAAACA-TTACTTTAAA-CAGTAAACTG-CTATGTTTTAAATTCAACACAATAACAATCTTAGGTTACAT---ATCAGTTGCCTGTGCATTCTGAATGATTCACTTACTC---GACAAC---TC--CTT-G--C-TTGCTATTTCATCAAAAT----TTAGACAT-----GGCATACACGTTtgt
gi|8 : ttGACTTATATA-------AAAGAATTGAGCAACTGAC---------TT-G-GAAAGCACTGGGA-TCACACAAA-----------ATCTCATTTTTATTTCTCTC--AGTTTTCATTCATCTGA--GGAATACAAAATAATAAAA--------------TACAAAAGCTT--GCTAAATATAACTTCC---TTA-CAAAATG--A------CCA-TACAAGCAAATAGTGTTCAAAAT
gi|9 : aTAAATTATGTTTGAATA-TTTACCA---AATAAATAATC--CTTTG--T-GTGCTATTATATCAATAT----TTAGTCAG-----GAGATGTAAGTTTCCTATCTT--TC-TATATAAGACCTTGCCA-AAGCTAAAgtatgcttgtttactgtcactgaacaaaaggcaattacttgaatgtatgt