lowQualScore : 11111111
lowQualScore : 1 5555555 11111111 1 111 33 222222 111 222 5555555555555 444444444444444444 444444 11111 333333333333 1 1111111 333333333333
lowQualScore : 1 0000000 1 33 5 444 0 66666666 3 3 444 0 555 1 11 1 1 5 5 6 22 7777 22 777777 4 444 1 11 0 55 1 7 000 1 2 7777777777777 666666 3 0 33 1 44 777 444444444444444444 5555 555555 1 1 1 333 1 1 1 3 1 44 5 3 5 000000 3 8888 777777 777777 555555 22 2 99999 44 22 1 222 444444444444 1 22 5 22 1 22 1111111 222 6 77 3 222222222222 22 22 33 7 3333 3333 6 44444 3333 0 1
lowQualScore : . ....... . .. . ... . ........ . . ... . ... . .. . . . . . .. .... .. ...... . ... . .. . .. . . ... . . ............. ...... . . .. . .. ... .................. .... ...... . . . ... . . . . . .. . . . ...... . .... ...... ...... ...... .. . ..... .. .. . ... ............ . .. . .. . .. ....... ... . .. . ............ .. .. .. . .... .... . ..... .... . .
lowQualScore : 0 7777777 8 22 8 111 4 11111111 6 4 111 4 444 9 22 7 8 0 5 4 55 7777 66 444444 0 000 8 99 1 00 8 4 333 8 9 7777777777777 888888 8 9 44 9 55 444 888888888888888888 1111 555555 9 8 8 222 7 7 7 8 7 11 9 5 5 888888 5 6666 000000 999999 888888 66 0 88888 11 55 8 999 333333333333 7 33 4 22 6 22 2222222 888 8 88 3 444444444444 11 11 77 0 3333 5555 1 22222 5555 4 7
consensus : CTTTCATGNTTTTT---CTCAGAACGAAATGAA--CTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACG---CACATTA--TATCGCGCATCATTT-CGAACAATTTCTCT-AATTTTAGACACGATTTTCTTACAT-GTTGCTGTCTTTGGCCGAC--CAGA----TTT--TG---CTGCATTTTTA-ACAGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC--ACTTTCGTCAA--CC-A--CATAAACCCG------TGTGATTTCATCAAAAATATA-TTTTAGAGAACAAC-C--GA--GTTTAGTACG-A-AAC--TT-------GATAT---AA------GT-CCGAATT-TCCTCA-T---TA-TTTGCT-A-CTCGT-TT--CCCAA-CCATTTTTACAACAG-GTG-G-TCAACG---ACTGCCTATATTGAAATGAC------TAT-----AACT------CTGGA-ATCCCGTGT-TTCA--G-CAG---AT----AC------AT-G--TATATAC--CAT-TGT--G------TAGGT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGT-AAA-ATT---CANC--G--T--G--A--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATT----TCGA-ACACCCCT
Reference ( gi|1 ) : CTTTCATGCTTTTC---CGAAGAACAAAATGAA--CTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATG---CACATTT--TATCGCGCATCATTT-CTCACAATTTCTCT-AATTTTAGACACGATTTTCTTACAT-GTTACTATCTTTAGCCGAC--CAGA----TTT--TG---CATCATTTTTA-ATAGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC--TCTTTCGTCAG--CCAAGCCATTAACCCG------TGTGATTTCATTAAAAATATA-TTTTAGAGAACAAC-C--GA--ATTTAGTACG-A-AAC--T--------GATAT---AA------GT-CCGAATT-TCCTCA-T---TA-TTTGCT-A-CTCAT-TT--CCAAA-CAATTTTTACAACAG-GTT-G-TCAACA---ACTGCCTATATTGAAATGAC------TAT-----AACT------CTAGA-ATCCCCTGT-TTCA--G-CAG---AT----A-------AT-G--TATAAAC--CAT-TGT--G------CAGGT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGC-AAA-ATT---CATC--A--T--G--A--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATT----TTGA-ACACCCCT
gi|2 : CTTTCATGATTTTT---CTCAGAACAAAATTAA--CTGAAGATAGTGAAA---TGCCTGCAATGCGTGCTT-------TTTCACG---CACATTG--TATTGCGCATCATTT-CAAACATTTTCTCT-AATTGTAGACACGAATTTCTTAAAT-GTTGCTGTCTTTGGTCGAC--CAGA----TTT--TG-----------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC--ACTT----AAG--TCAACTTATAAACCCGACGGCGTGTGATTTCATTAAAAATACA-TTTTAGAGAACAAC-C--AA--GTTTAGTACG-A-A-C--TTT------GATAT---CA------GT-CGGAATT-TCCTTA-T---TT-TTTGCT-A-ATTGT-TTTTCCAAT-CA-TTTTAACAACAG--TG-G-TCAACG---ACTGTCTATAACGAAATGAC------TAT-----AACT------CTGGA-ATTGCGTGT-TTCA--G-CAA---ATCCATAC------AT-G--TATA--T--CAT-TGT--G------TAAGT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGT-AAA-ATT-----TC--A--C--GCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATT----TCGA-ACACCGCT
gi|3 : CTTTCATGATATTT---CTTAGAACCAAATGAA--TTGAAGATAGTGAAA---CGTCTACGATGCATGTTT-------TATCACG---CA---TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTTTAGACACGATTGTCTTATAT-GTTACTGTCTATGGTCGAC--CAGA----TTT--TG---CTGCTTTTTTA-G-AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC--TTTTTCGTCAA--CC----CAAAAACACG------TTT-ATTTCATCATCACTATA-TTTTAGAGAACAAC-C--GA--GCTCAGTACG-A-A-C--TTT------GATAT---AA------AT-CCAAATT-TCCTCA-A---TA-TATGCT-A-CTCGC-TT--CCAAA-CCATTTT-ACAACAC--TT-G-TCAACG---ACTGCCTATATTGAAATGAC------TAT-----AACT------ATAGA-ATTCC--GTATTCA--G-CGG---AT----AC------AT-G--TATATTT--CAT-TGT--G------TAGGT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGT-AGC-ATT---TAAC--G--T--G--A--ATTTTGTGCGA----
gi|25 : CTTTCATGATTTTA---CTCAAAACGAAATGAA--CTTAAGATAGTGAAA---Ctaatggcagtttagtaagtattaaaaatc
gi|29 : aCTTTCATGATTGCT---CTTATAACGAAATGAA--CTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACG---CACATTT--TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTatattatatcgcgcatcatttcaaacattttctctaaatttagatgtgttttccttacatgtctttggccgaccagaatttgctgcatttttaagacttcacaccagaatcaaatttctttttccatctcataagatactttcagtaacctataaaacactgtgatttcatcaagaatatcgagaacaactgagtttagtacaaactttga
gi|9 : agaatttttcTTTCATGTTTTTTTTTCTCAGAATGAAATGAA--CTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACG---CACTTTA--TACCGCGCATCATTT-CAAACAATTTCTCT-AAAACAAAACACGATTTCCTTACAT-GTTGCTGTGTTTGATCGAC--CACA----TTT--TG---CTGCATTTTTA-ACAGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC--ACTTTC----G--CCAATACATAAACTCG------TGTGATGTCATCAAAACTAAC-TTTTAGAGAACAAC-C--GA--GATTAGTACG---AACTTT--------GATAT---AA------GT-CCAAATT-TCTTCA-T---TA-TTTGCT-A-CTCGT-TT--CCGAGTCATTTTTTACAACA--GCA-G-TCAACG---ACTGCCTATATTGAAATGAC------TA---------T------CTAGG-AT-CCGTAT-TTCA--G-CAG---AT----AC------AT-G--TATATAC--CAT-TGT--G------AAGGC---ATTctgtgcactacttccggttgtcgctgttatccaaattgcaacaagaggtcctattgcgt
gi|10 : TTCATGTTTTTTTT-CTCAGAACGAAATGAA--CTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACG---CACTTTA--TACCGCGCATCATTT-CAAACAATTTCTCT-AAAACAAAACACGATTTCCTTACAT-ATTGCTGTGTTTGATCGAC--CACA----TTT--TG---CTGCATTTTTA-ACAGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC--ACTTTC----G--CCAATCCATAAACTCG------TGTGATGTCATCAAAACT-TACTTTTAGAGAACAAC-C--GA--GATTAGTACG---AACTTT--------GATAT---AA------GT-CCAAATT-TCTTCA-T---TA-TTTGCT-A-CTCGT-TT--CCGAGTCATTTTTTACAACA--GCA-G-TCAACG---ACTGCCTATATTGAAATGAC------TA---------T------CTGGG-AT-CCGTAT-TTCA--G-CAG---AT----AC------AT-G--TATATAC--CAT-TGT--G------AAGGC---ATTt
gi|18 : TTCATGATTTTT---TTCAGAACGAAATTAA--CTGAAGATAGTGAAA---CTCCCGCAATGCGTGC--AAT-----ATCACT---CACATTA--TTTCGCACATCATTT-CGAACAATTTCTCTTAATTTAAGACACAATTT-CTTACAG-TTTGCTGTTTTTGGTCGAC--CAAA----TTT--TA---CAT---TTCTA-ACAGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC--ACTTTCGTCAA--CC----CATAAACCCG------TGTGATTTTGGCAAAAATATC-TTTTAGAGAATAAC-C--GA--GTTTAGTACG-ATCTC--T--------GATAT---TA------GT-CCGAATT-CCTTCA-T---TA-TTTGCT-A-GTTCT-TT--CCCAA-
gi|26 : TTGATGTTTCTC------AAAACGAAATCAA--CTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATG---TATATTA--TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTTTAGATATGATTTTCTAACAA-GTTGCTGTCTTTGACCAAC--CAGA----TTT--TG---C-TGCTTTTTA-ATAGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC--tc
gi|28 : tgttcTTGATGTTTCTC------AAAACGAAATCAA--CTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACG---TATATTA--TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTTTAGACACGATTTTCTTACAA-GTTGCTGTCTTTGACCAAC--CAGA----a
gi|5 : ttttcttaatgttcGAAAAAAATGAA--CTGAAGATAGTGAAA---CGCCTGCAATATGTG-TCA------TATCACT---CAAATTA--TATCGTGCATCATTT-CGAACAATTTCTCT-TATATTAGACACGATTTTCTTACAT-GTCGCTGTCTTTAGCCAAC--AAGA----TTT--TG---TTGCATTTT------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC--ACTTTCGTCAA--CC----CATAAACCCT------TGTGATT-CTTTAAAATTATA-TTTTGGAGAACAAC-C--GA--GTTCAGTACG-A-A-C--TTT------GAT-T---AA------GT-CCGAATT-TCCTCA-T---AT-TTTCCTCA-CTTGT-TT--CCAAA-CAATTTTTAGAACA--GTG-G-TCAACG---CCTGCCTATATTGAAATGAC------ATT-----TACT------CTTGA-ACCCCCTGT-TTCA--G-CAG---AT----AC------AT-G--TATATAC--CAC-TGT--G------TAAGC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGT-AAA-ATT---TTGT--A--T--G--T--ATTTTGCGCCA----C-----------TAC-----ACAATACATT----TCGA-ATACCCCTatcttataaactatataaaaataaactgaacagaac
gi|4 : AAAAAAATGAA--CAAAAGATAGTGAAA---CGCCTGCAATGTGTG-TCA------TATCACT---CAAATTA--TATCGCGCATCATTT-CGAACAATTTCTTT-TATATTAGACACGATTTTCTTACAT-GTTGCTGTCTTTAGCCAAC--CAGA----TTT--TG---CTGCATTTT------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC--ACTTTCGTCAA--C----CCATAAACCCG------CGTGA-TTCTTTAAAATTATA-TTTTGGAGAACAAC-C--GA--GTTCAGTACG---AACTTT--------GATAT---AA------GT-CCGAATT-TCCTCGTT---TT-TTTGCT-A-CTTGT-TT--CCCAA-CCATTTTTAGAACA--GTG-G-TCAACG---AGTGCCTATATTGAAATGAC------TAT-----TACT------CTGGA-ACCCCTTGT-TTCA--G-CAG---AT----AC------AT-G--TATATAC--CAC-TGT--G------TAAGC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGT-AAA-ATT---TTGT--A--T--G--T--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATT----TCGA-ATACCCCTcc
gi|12 : CAAAATGAA--CTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACG---CACATTA--TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTTTAGACAACATTT--TTACAT-GTTGCTGTATTT-GCTGAC-----------TT--TA---CTGCATTTTTA-ACATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC--ACTT------------------------G------TGTGTTTTCATCAAA---------------ACCAAC-C--GAGTACTCAGTAC--A-AACTTT--------AATAG---TA------GT-GCAACTG-TCTTCA-T---TA-TTTGTT-A-TTCGT-TT--CCCAA-CCATTGTTACAA----GTG-G-TCAACG---ACTGCATATATTAAAATAACA-----TAT-----AAcc
gi|22 : AAATGAA--CTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACG---CACATTA--TATTGCGCATCATTT-CGAACAATTTCTCT-AATTTTTGACACAATTTTCTTACAT-GTTGCTGGCTATGGTCGAC--CAGA----TTC--TG---CTGCA-TTTTA-ACAGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC--ACTTTTGTCAA---CA---CATACACCCG------TGATATTTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|17 : gAATCAA--CTGAATATAGTAAAA---CGCCTGCAATG-----TC--TGCTATGTCACG---CACATAT--TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTTTAGACACGATTTTCTCACAT-GTTGCAGTCTTTGGCCGAAAACA-A----TTTCCTG---CA--ATTTTAACAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC--ACTTTCGTCAATCCCGA------AACTCA------TGTGATTTCATC-AAAACATC-TTTAAGAGAACAAC-C--AA--GTTTAGTACG---AACTTT--------GGTAT---AG------GT-CCGAATT-TCCTCG-T---TA-TTTGCT-A-CTTGT-TT--TCAAA-CCG-TTTTACAACAGCG---G-TCAACG---ACTGCCTATATTagctcagttaattgtagtgttattattcatgttatt
gi|13 : AATGCATGCTGTAAA-AGTGACA---AGCCTGCAACGCGTGCT-------ATATCACG---CA-GTTA--CATCGCGCATCATTT-CAAACAAATTCTCT-AAATTTAGACACGATTTTCTTACCT-GTTGCTATTTTTGGCCGAC--AAAA----TTT--TG---CTACATTTTAA-AC--ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAA
gi|6 : gtTGAA--CTGAAGATAGTCAAA---CGCCTGCA----------------------TG---TACATTA--TATCGCACAT-ATTTACGAACAATTTCTCC-TATTTTAGACATGATTTCCTTACAT-GTTGATATCAGTGGCCGAC--CAGA----TTT--TG---CTGCATTTTTA-ACAGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA--ACTTTCGTCAA--C----CCATAAGCCCG------TGTGATTTCATCCAAAACATC-TTTTAGAGTACAAC-C--GA--GTTTAATAC--C-AAC------------AAAT---GA------GT-TCAAATT-GCCTTA-T---TA-TTTGCT-T-CTCATATT--CCAAC-CAATTTTTACAACAG---T-GATCAACG---ACTGCGTATATCAAAATGAC------TAT-----AACT------CTGGA-AGCGCGTAT-TTCA--G-CAG---AT----T-------CA-G--TATTTAC--TAT-TGT--G------TAGGT---ATTGA--------ATCCACGCGAATATACATCGATGT-TAA-ATT---CCAC--G--T--G--A--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATT----TT-A-AC-CCTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|45 : TGTA--CTGAAGATAGTGACA---CGCCTGCAATACGTGCc
gi|7 : TATCACG---CACATTA--TATTGCAAATCATCT-TGAACAATTTCTCT-TATTTTAGACACGATTTTTTGACAT-GTTGCTGTCTTTGGCCGAC--CAGA----TTG--TG---CTACGTTTTAA-A-AGATTCTACAC-CAAAATCAA-TTTTTCT--TT---------------TCTTATAAGACAACTTTTTATAAA--CC----CATAAACCCG------TGTGATTTCATCAAAAATATC-ATTTAGAAAACAAC-C--GA--GTTTACTTCG---AACTTT--------GATAT-------------------TTGTTTTCA-T---TA-TTTGCT-A-CTCGT-TT--CCCAA-CAAT------------------TCAACA---ACTGTCTGTATTGAAATGAC------AAT-----AACT------CTGGA-ATCTCGTGT-TTAA--G-CAG---AT----AC------AT-GTTTATAAAC--CAT-TGT--T------TAGGT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGT-AAA-AT-----ATC------------------------A----CTTATA----AATAC-----ACAATACATT----TCGA-ACACCCTTcgt
gi|25 : taacttttatgatttttctcaaaacgaaaATAGTGAAACATATTA--TATCGCGCATCATTT-CAAACATTTTCTCT-AAATTTAGATGTGTTTTCCTTACAT-G------TCTTTGGCCGAC--CAGA----ATT--TG---CTGCATTTTTA---AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT--ACTT---TCAG---TAACCTATAAAACAC------TGTGATTTCATCAAGAATA------TCGAGAACAAC-T--GA--GTTTAGTAC--A-AAC--T--------cgt
gi|8 : actttcatgattttactcaaaacgaaatgaacttaagACATTA---ATCGCGCATCATTT-CGATCAATTTCTGT-AATTTTAGAATCGATTTTTTTACTT-ATTGCTGTCTTTGGCCGAC--GAGA----TTT--TG---CTGCATTTT-A-ACA--CTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT------------------A---ATTAACGCG------TGTGATCCCATTAAAAATATC-TTTTAGAGAACAAC-C---A--AGTTAGTACG-A-A-C--TTT------AATATCCGAA------TTTCCGTATT-TTCTCA-T---TG-TTTGCT-A-CTCGT-TT--CCCAA-CCATTTTTACAACAA--TG-G-TCAACG---ACTGCCTATATTGAAATGAC------TAT-----AACT------CTGAA-ATCCCGTGT-TTCA--G-CAG---AT----AC------AT-G--TATAAAC--CAT-TGT--G------TAGGT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGT-AAA-ATT-----TC--A--CGAG--A--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATT----TTGA-ACACCCCTttga
gi|14 : ACATTG--TATCGCGCATCATTT-C--------------------AAACA--ACTTCCTT---T-GTTGCTGACTTTTACCGAT--CTTA----TTT--TGTTGCGTTTTTTTTT-TCAGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC--ACTTTCGTCAA--CC----CATAAACCTG------TATTATGT-AT---GACTATA-TTTTAGAGAACAGT-C--GA--GTTTAATATG-A-ATT--TT-------GATAT---AA------AT-CTGAATT-TCCTCA-T---TA-TTTGCT-A-CTCGG-TG--CCCAA-CGATGTTAACAACA--GTG-G-CCAA-G---ACTGCATCTGTTAAA-------------------AACT------CTGGA-ATCCCGTGT-TTTA--G-CAA---AA----AC------AG-A--AATAACT--TAT-TGT--G------TAGGT---ATTGACTACAG---------CGTATAAATATCGATGT-AAA-TTT-----TCAAA--T--G--A--ATCTTcgt
gi|16 : --TATCCCGCATCATTT-CGAACAATATCGAT-AATTTTAAACATGATTTTCGTATAT-GTTGCTGCCGTTGGCCGAT--CAGATTTGTTT--TG------CATTTTTA-ACAGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|30 : atggCATTT-TCAATAATATCATT-AACTTTTGAGAC-ATTATCTGATAGAGTTA-------------AC--CAGA----TTT--CC---CATCATCCTTA-A-AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT--ACTTTCGaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|11 : CTCT-AATTTGAGACACGAATTTCTTACAT-GTTGCTGTCTTTAGCCGAA--GAGA----TAT--TG---TTGCAC----A-CCAAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC-----------TTTCGTCAA--CC----CTTAAACCCT------CCTGACTTTATCAAAATT-TA-TATTAGAGAACAAC-C--GA--AATTAGTACG-A-A-C--TTC------GACAA---AA------GT-CC-AATG-TCCTCA-T---TT-TTTGCT-A-CTGGT-TT--CCCAA-CAACTTTTACAA-----TG-G-TCAACG---AATGTCTACATTGGAATGAC------TAGGA---AACT------CTGGA-ATCCCGTGG-TTCA--G-CAG---AA----AC------AT-G--TATATAC--CAT-TGT--G------TATGT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGT-AAA-ATT-----TT--AAGT--G--G--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATT----TCGA-ACACCC
gi|15 : T-AATTTTAAACATGATTTTCGTATAT-GTTGCTGCCGTTGGCCGAT--CAGATTTGTTT--TG------CATTTTTA-ACAGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCtcg
gi|19 : a-CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGAC-------CATCA---TCAACCCATAAATCCG------TGTGATTTCATT-AAAATATA-TTTTAGAGGACAAC-C--GA--GTTTAGTACG---GACTTT--------GACAC---GA------GT-CCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGT-TT--CCCAA-CCAATTTTACAACA--ATG-G-TCA----------CC-----TGAAATGAC------TAT-----AAC-------ATGGA-ATCCTGTGT-TTCA--G-CAG---AT----AC------AT-G--TTTATAC--TAT-TGT--G------TAGGT---ATTGAATAGAGCTATTCATGAGTATAAAaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|15 : ATTTCATCAAAAATACA-TTTTAAAAAACAAT-C--TA--ATTTAGTACG-A-A-C--TTT------GATAT---CA------GT-CCGAATT-TCCTTA-T---TA-TTTGCT-G-TTCGT-TT--GCCAA-CCATTTTTACAACA--GTG-G-TCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCT------ATATA-------TGC---------CAG---AT----AT------AC-T--TATATAC--CAT-TGT--GAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTT-GAATTTT---CA-C--G--T--G--A--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATT----TCGA-ACAATCCTaacaatacttttcgaatacccctcgtat
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttATTTCATCAAAAATACA-TTTTAAAAAACAAT-G--TA--ATTTAGTACG-A-ATT--T--------GATAT---CA------GT-CCGAATT-TCCTTA-T---TA-TTTGCT-G-TTCGT-TT--TCCAA-CCATTTTTACAACA--GTG-G-TCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCT------ATATA-------TGC---------CAG---AT----AT------AC-T--TATATAC--CAT-TGT--G------AA--T---ATCGA-----------------TGTGAATTTTCACGT-GAA-TTT------------T--G--A--GT-------GA----CTTATA----TATAC-----ACAATACATT----TCGA-ACAATCCT
gi|20 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttTTCAGTAAAAATCTG-TTTTATTGAAAGGC-CTAGAT-GTTT--TACGCA-AAC--TTTGGTATTGATAT---AA------AC-TCAAATT-TCTTCA-A---AA-TGTTTT-AACTCAT-TTT-CCAAC-CAATTTT-ATAACAG--TG-G-TCAACA---TTTGCCTATTTTGAAATGAT------AAT-----TATT------TTATA-A----CTGTATTGA--A-CTGGCTATCC--A-------AT-G--TATACACAACAC-TTT--C------AAGAT---AGCGAATA----TATC--TAC-TATTAAAATCAATGT-ATA-ATTTGACACG--A--T--G--AT-AT----CGTG------TTATAGTCCAATAC-----ATATTACATA----CTGA-ACAGCCCTcgt
gi|21 : TTCACAAAATACATA-TTTT--TGCACAAA-C-------TTCAATAT--A-TAT--A--------GATAT---AAATTGAGGT-TGAAATT-TCTTCA-A---TA-TATTTT-A----AT-TG--TCAAA-CCATTTCTATAACA--ATG-G-TCAATG---GCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAACTAGAGAT---TTGT-------G-AAT---AT----AC------AT-G--T----AC--CAT-TGT--C------AAGGT---AATAAATGTAGTTACTCAT--GTGTAA----CAAT--------TT---CCAC--A--T--G--A-----TTGCATAAAAGTCTTATA--------C-----ACATTACATA----TTGA-ACAGCCCTt
gi|23 : aatttagtaaaaatttgcACAACGCA-GA--GTTCAGTAC--A-AAC--TTT------GATAT---CA------GC-CCGAATT-TCCTCA-TAATTA-TTTGCC-C-CATAT-TT--CCCAA-CCATTTTTACAATAG--TG-G-CCAATG---TCTGTCTATATTCAAATGAC------T-----------------CTA--------CT-----------CAG---GT----AC------AT-G--TATA-------------------------T---AT-GAGTAGAGATATCCATTCGTAGAAATATCGACGT-AAAGATT---CA-C--G--T--A--A--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATT----TTGA-ACACCCCT
gi|35 : gaacccttatcatatgagctttctcgattcg--T--------GATAG---AA------GT-CCGAATT-TCCTCA-T---TA-TTTGCT-A-CTTGT-TT--CCCAA-CCATTTTTACAACA---TTGG-TCAATG---GCTGCTTATATTAAAATGAC------TAT-----c
gi|38 : tctgaacttAATT-CCCTCA-A---TA-ATATCT-A-CTCGT-TT--TTAAC-CG-TTTTTACAACAG-G---GATCAACG---ACTgc
gi|27 : -TTAGCT-T-CTCGT-TT--TCCAA-TTATATTTGT----G-GTG-G-CCAACA---ACTGCTT-TGTTGAAATGAA------TATTTGTCACCT------AT----ATCGATTGG-GTTG--GACAG----T----A-------TT-G--TATA-----CATGTATAGA------CAGTT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGT-ACA-ACT---CCTT--G--T-----A--GTTAT-CGAGA------TAAC----AATG------ATATTGCATTACTGTTGAGACAACCCT
gi|33 : TATAACAG--TG-G-TCAACA---ACTAACTGCATTAAAATGAC------GGT-----TATT------TTACA-A--CTATGT-TGAACTA-CAG---ATC---C-------AT-G--AATATAA--CAT-TGT--C------AAGGT---AATAAACAGAACTAAGCATGTGAATCAATAcatat
gi|40 : AATGAC------TAT-----AACT------CTGAA-ATACCGTGT-TTCA--G-CAG---AT----AC------AT-G--TGTATAC--
gi|32 : GT-TTCA--G-CAG---AT----A-------TTTG--TATGTAC--CAT-AGT--G------CATATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGT-AAA-ATT---CA-C--G--T--G--A--ATTTTGCGCGA----CTTATA----A----------------ATT----TTGA-ACACCCCTgtg
gi|31 : ccgaCA--G-CAG---AT----ATAATATTAT-G--TATGTGC--CAT-TGT--G------TAGGT---ATTGAATAGAGCTAATCATGCGTATAAATA---AGTC-AAA-TTC---CAT---G--T--G--A--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATT----TTGA-ACACCCCTcg
gi|12 : AA---AT----A-------AC-A--TATAAAC--CAT-TGT--G------TATTT---ATTGAATATAGCTATCC--ACGTGTAA-----GAT--------TT---CA-C--G--T--G--T--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATT----TTGA-ACACCCCTcg
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatatta---AT----AT------AT-A--TATATAT--AAT-TAA--G------TAGGT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAA-ATT---TA-C--G--T--G--A--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATT----TCGA-AAAACTCTcgt
gi|34 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatat--CAT-TGT--G------TAGGT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGT-TAA-CTT-----TC--A--C--G--AGAATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-C----CCGA-ACACCCCTca
gi|24 : T-TGT--G------TAGGT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGT-AAA-ATT---CAAT--G--T--G--A--ATTTTGAGCGA----TTcg
gi|36 : GTATAAATATCGATGT-AAA-ATTG--TA-C--A--T--G--A--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATT----TCGA-ACACCCgttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|37 : TAAATATCGATGT-AAA-ATT---CCAC--G--T--A--A--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATT----TCGA-ACACTTCTag
gi|39 : AA-ATT---CCAC--G--T--G--A--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATT----CCAA-ACACCCCTca
gi|43 : --T--G--A--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATT----TCGA-ATATC
gi|42 : tg--T--G--A--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATT----TCGA-ATATCttcgt
gi|41 : catgACACGA----CCTATA----AACAT-----ACAATACATT----TCGA-ATACCCCTttcg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 3333 11 22 1111 11
lowQualScore : 1 111 333 7777777 1 1 1 1 22 1 3 3 777777 1 11 44 1 2 22 0 1111 666666 44 22 1 44 1 22 1 66 5555555 4444 555555 1 1 1 333 1 1 1 1 1 3 66 555 666666 66666 5 0000 1 22 22 22 5555 222 444444 22 33 0 444444 222 1 3 44 22 3333 3333 44444
lowQualScore : . ... ... ....... . . . . .. . . . ...... . .. .. . . .. . .... ...... .. .. . .. . .. . .. ....... .... ...... . . . ... . . . . . . .. ... ...... ..... . .... . .. .. .. .... ... ...... .. .. . ...... ... . . .. .. .... .... .....
lowQualScore : 0 444 999 2222222 9 8 7 7 33 7 6 3 444444 8 00 88 7 0 88 1 6666 444444 77 88 8 33 8 55 7 77 7777777 5555 222222 8 7 7 000 7 7 7 7 7 5 88 888 777777 77777 7 0000 8 44 44 33 0000 888 666666 22 77 9 444444 777 7 2 11 11 3333 5555 22222
consensus : CTTTCATGATTT---TTCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTC-TAATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAC-ACCAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAACC----CATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG-AACTTT-------GATAT---AA------GT-CCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCG-TTTCCCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGT-AAA-ATTCNACGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGNTTT---TTCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTC-TAATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAC-ACCAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAACCA---CATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG-AAACTT-------GATAT---AA------GT-CCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCG-TTTCCCAACC-A-TTTTTACAACAGGTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGT-AAA-ATTCANCGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTT---TCCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTC-TAATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTAC-ACCAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACG-AAAC-T-------GATAT---AA------GT-CCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCA-TTTCCAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G----ATA----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGC-AAA-ATTCATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTT-TTCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTC-TAAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTAC-ACCAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAATC----CATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG-AACTTT-------GATAT---AA------GT-CCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCG-TTTCCGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTC-TAATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCAC-ACCAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAACC----CTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG-AACTTC-------GACAA---AA------GT-CC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGG-TTTCCCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G----AAAC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGT-AAA-ATTTTAAGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTC-AAATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTAT-A----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA-AACTTT-------AATAG---TA------GT-GCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCG-TTTCCCAACC-A-TTGTTACAA---GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A----ATA----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCA--CGTGTAA-----GAT--------TTCA-CGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTC-TAAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTAC-ACCAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa----ATAT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAA-ATTTA-CGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTAC-ACCAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAACC----CATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG-AATTTT-------GATAT---AA------AT-CTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCG-GTGCCCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A----AAAC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGT-AAATTTTCAA-ATGA--ATCTTca
gi|15 : -TAATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGC-ATCTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG-AACTTT-------GATAT---CA------GT-CCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCG-TTTGCCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G----ATAT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTT-GAA-TTTTCACGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGA-TAATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGC-ATCTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG-AA-TTT-------GATAT---CA------GT-CCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCG-TTTTCCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G----ATAT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT-T------------TTCA-CGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTC-TAATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTAT-ACCAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAATCC---CG-AAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG-AACTTT-------GGTAT---AG------GT-CCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTG-TTTTCAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTT---TTTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAA-TTTC--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT----TACATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAACC----CATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG-ATCTCT-------GATAT---TA------GT-CCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTC-TTTCCCAATC-
gi|19 : CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAACC----CATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG-GACTTT-------GACAC---GA------GT-CCGATTA-TCCTCA-T---TACCTTGCT-A-CTCG-TTTCCCAACC-A-ATTTTACAACAA-TGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G----ATAC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTT---TTCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTC-TAATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTAC-AACAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAACT----TATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG-AACTTT-------GATAT---CA------GT-CGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--AATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGT-AAA-ATTTCACGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------AC-TCAAATT-TCTTCA-A---AAT-GTTTT-AACTCA-TTTTCCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G----CTATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGT-ATA-ATTTGACACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA-TA--TA-------GATAT---AAATTGAGGT-TGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTG-T---CAAACC-A-TTTCTATAACAA-TGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T----ATAC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTAACAAT--------------TTCCACATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTC-TAATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTAT-ACAAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAA-CA---CATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA-AACTTT-------GATAT---CA------GC-CCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATA-TTTCCCAACC-A-TTTTTACAATAG-TGGC---CAATGTCTGTCTATATTCAAATGAC------TCT-----A---CT------------------------CA--G----GTAC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGT-AAAGATTCA-CGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGT-AAA-ATTCAATGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTT---TACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTC-TAAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCAC-ACCAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAACC----TATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTAC--AAACTT-------gttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGT---TTCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATT-TGATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTAC-ACCAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--tga
gi|27 : tgT-TAGCT-T-CTCG-TTTTCCAATT-A-TATTTGT----GGTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGT---ATAC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGT-ACA-ACTC
gi|28 : TTCTTGATGT---TTCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTT-TGATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGActtgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTG---CTCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNN-NNNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATAT---TTCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTC-CTATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTAC-AGCAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAACC----CAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG-AACTTT-------GATAT---AA------AT-CCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCG-CTTCCAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G----ATAC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGT-AGC-ATTTAACGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCAT-TAACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTAC-ACCTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G----ATAT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GT-CAA-ATTCCATGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G----ATAT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGT-AAA-ATTCA-CGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACAG-TGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G----ATCC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGT-TAA-CTTTCACGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G-AACTTT-------GATAG---AA------GT-CCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTG-TTTCCCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGT-AAA-ATTGTACATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGT-AAA-ATTCCACGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCG-TTTTT-AACC-G-TTTTTACAACAGG-GAT---CAACGACTca
gi|39 : AA-ATTCCACGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTT-TTATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTC-ACCAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAACC----CATAAACCCG------CGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG-AACTTT-------GATAT---AA------GT-CCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTG-TTTCCCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGT-AAA-ATTTTGTATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G----ATAC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaacaGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : catGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTC-TTATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTC-ACCAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAACC----CATAAACCCT------TGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG-AACTTT-------GAT-T---AA------GT-CCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTG-TTTCCAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGT-AAA-ATTTTGTATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTC-CTATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAA-ACCAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAACC----CATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATAC--CAAC----------AAAT---GA------GT-TCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCA-TATTCCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G----ATTC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGT-TAA-ATTCCACGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTT---TTCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTC-TTATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACGTTTT-AA---A--AGATTCTAC-ACCAAAATCAA-TTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAACC----CATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG-AACTTT-------GATAT-------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCG-TTTCCCAACA-A-TT------------------CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G----ATAC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGT-AAA-AT--ATC----------------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTG-TAATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCATTTT-AA---C--A--CTCTAT-ACCAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-GT--T-AGTACG-AACTTT-------AATATCCGAA------TTTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCG-TTTCCCAACC-A-TTTTTACAACAA-TGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G----ATAC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGT-AAA-ATTTCACGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTC-TAAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTAC-ACCAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAA-TA---CATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG-AACTTT-------GATAT---AA------GT-CCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCG-TTTCCGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G----ATAC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 1111
lowQualScore : 111 333 7777777 1 1 1 1 22 1 3 0 777777 1 0 44 1 2 22 4444 666666 44 22 1 44 1 22 44 555555 4444 777777 1 1 333 1 1 1 1 1 3 1 555 666666 888888 1 4 0000 1 22 22 22 1 3333 222 444444 22 33 0 444444 222 0 1 55 22 3333 3333 44444
lowQualScore : ... ... ....... . . . . .. . . . ...... . . .. . . .. .... ...... .. .. . .. . .. .. ...... .... ...... . . ... . . . . . . . ... ...... ...... . . .... . .. .. .. . .... ... ...... .. .. . ...... ... . . .. .. .... .... .....
lowQualScore : 444 999 2222222 9 8 7 7 33 7 6 6 444444 7 5 88 7 0 88 7777 444444 77 88 8 33 8 55 11 000000 5555 000000 7 7 000 7 7 7 7 7 5 7 888 777777 222222 0 5 0000 8 44 44 33 6 4444 888 666666 22 77 9 444444 777 2 6 22 11 3333 5555 22222
consensus : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAA-ATTCCACGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAA-ATTCNACGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTTT---CCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACGA-AAC--TG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCATTTC-CAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G-AT----A----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGCAAA-ATTCATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTTT-TCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----CCATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTCT-AATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAAC----CCTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG--AACTTCG------ACAA---AA------GTCC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGGTTTC-CCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G-AA----AC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGTAAA-ATTTTAAGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA--AACTTTA------ATAG---TA------GTGCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCGTTTC-CCAACC-A-TTGTTACA--A-GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A-AT----A----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCACG--------------TGTAAG-ATTTCACGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTCT-AAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa-AT----AT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAA-AATTTACGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAAC----CCATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG--AATTTTG------ATAT---AA------ATCTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGGTGC-CCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A-AA----AC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGTAAA-TTTTCAAATGA--ATCTTca
gi|15 : T-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG--AACTTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTG-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTTGAA-TTTTCACGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGAT-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG--AA-TTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTT-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT-------------TTTCACGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAAT----CCCGAAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------GTAT---AG------GTCCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTGTTTT-CAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTTT---TTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAATTT-C--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT-TAC---ATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG--ATCTCTG------ATAT---TA------GTCCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTCTTTC-CCAATC-
gi|19 : -CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAAC----CCATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG--GACTTTG------ACAC---GA------GTCCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGTTTC-CCAACC-A-ATTTTACAACA-ATGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G-AT----AC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTTT---TCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTCT-AATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAAC----TTATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------ATAT---CA------GTCGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--A-ATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGTAAA-ATTTCACGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------ACTCAAATT-TCTTCA-A---AAT-GTTTT-AACTCATTTT-CCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G-CT----ATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGTATA-ATTTGACACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA--TA--TAG------ATAT---AAATTGAGGTTGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTGT----CAAACC-A-TTTCTATAACA-ATGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T-AT----AC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTAACAAT-------------TTCCACATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTCT-AATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAAC----ACATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA--AACTTTG------ATAT---CA------GCCCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATATTTC-CCAACC-A-TTTTTACAATA-GTGGC---CAATGTCTGTCTATATTCAAATGAC------TCT------ACT--------------------------CA--G-GT----AC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGTAAAGATTC-ACGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGTAAA-ATTCAATGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTTT---ACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTCT-AAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAAC----CTATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTACA--AACTTTG------Agttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--
gi|27 : tgT-TAGCT-T-CTCGTTTT-CCAATT-A-TATTT---GTG-GTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGTAT----AC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGTACA-ACTC
gi|28 : TTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGActtgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTGC---TCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATATT---TCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAAC----CCAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG--AACTTTG------ATAT---AA------ATCCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCGCTTC-CAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G-AT----AC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGTAGC-ATTTAACGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCATT-AACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G-AT----AT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GTCAA-ATTCCATGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G-AT----AT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGTAAA-ATTC-ACGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACA-GTGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G-AT----CC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGTTAA-CTTTCACGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G--AACTTTG------ATAG---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGTAAA-ATTGTACATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGTAAA-ATTCCACGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCGTTTT-T-AACC-G-TTTTTACAACA-GGGAT---CAACGACTca
gi|39 : AA-ATTCCACGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTTT-TATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------CGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGTAAA-ATTTTGTATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaacaATGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : cGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTCT-TATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCT------TGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------AT-T---AA------GTCCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTGTTTC-CAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGTAAA-ATTTTGTATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTCC-TATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAAC----CCATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATACC--AAC----------AAAT---GA------GTTCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCATATT-CCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G-AT----TC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGTTAA-ATTCCACGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTTT---TCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTCT-TATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACG-TTTTAA---A--AGATTCTACAC-CAAAATC-AATTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG--AACTTTG------ATAT------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACA-A-T---------------T---CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G-AT----AC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGTAAA-AT-----------ATC-------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTGT-AATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCA-TTTTAA---C----ACTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-G---TTAGTACG--AACTTTA------ATATCCGAAT-----TTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-ATGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGTAAA-ATTTCACGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----ACATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 1111
lowQualScore : 111 333 7777777 1 1 1 1 22 1 3 0 777777 1 0 44 1 2 22 4444 666666 44 22 1 44 1 22 44 555555 4444 777777 1 1 333 1 1 1 1 1 3 1 555 666666 888888 1 4 0000 1 22 22 22 1 3333 222 444444 22 33 0 444444 222 0 3 22 3333 3333 44444
lowQualScore : ... ... ....... . . . . .. . . . ...... . . .. . . .. .... ...... .. .. . .. . .. .. ...... .... ...... . . ... . . . . . . . ... ...... ...... . . .... . .. .. .. . .... ... ...... .. .. . ...... ... . . .. .... .... .....
lowQualScore : 444 999 2222222 9 8 7 7 33 7 6 6 444444 7 5 88 7 0 88 7777 444444 77 88 8 33 8 55 11 000000 5555 000000 7 7 000 7 7 7 7 7 5 7 888 777777 222222 0 5 0000 8 44 44 33 6 4444 888 666666 22 77 9 444444 777 2 0 11 3333 5555 22222
consensus : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTTCACGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTCCACGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTTT---CCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACGA-AAC--TG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCATTTC-CAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G-AT----A----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGCAAAATTCATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTTT-TCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----CCATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTCT-AATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAAC----CCTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG--AACTTCG------ACAA---AA------GTCC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGGTTTC-CCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G-AA----AC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGTAAAATTTTAAGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA--AACTTTA------ATAG---TA------GTGCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCGTTTC-CCAACC-A-TTGTTACA--A-GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A-AT----A----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCACG--------------TGTAAGATTTCACGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTCT-AAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa-AT----AT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAAATTTACGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAAC----CCATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG--AATTTTG------ATAT---AA------ATCTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGGTGC-CCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A-AA----AC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGTAAATTTTCAAATGA--ATCTTca
gi|15 : T-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG--AACTTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTG-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTTGAATTTTCACGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGAT-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG--AA-TTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTT-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT------------TTTCACGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAAT----CCCGAAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------GTAT---AG------GTCCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTGTTTT-CAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTTT---TTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAATTT-C--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT-TAC---ATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG--ATCTCTG------ATAT---TA------GTCCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTCTTTC-CCAATC-
gi|19 : -CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAAC----CCATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG--GACTTTG------ACAC---GA------GTCCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGTTTC-CCAACC-A-ATTTTACAACA-ATGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G-AT----AC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTTT---TCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTCT-AATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAAC----TTATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------ATAT---CA------GTCGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--A-ATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGTAAAATTTCACGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------ACTCAAATT-TCTTCA-A---AAT-GTTTT-AACTCATTTT-CCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G-CT----ATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGTATAATTTGACACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA--TA--TAG------ATAT---AAATTGAGGTTGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTGT----CAAACC-A-TTTCTATAACA-ATGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T-AT----AC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTAACAAT------------TTCCACATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTCT-AATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAAC----ACATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA--AACTTTG------ATAT---CA------GCCCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATATTTC-CCAACC-A-TTTTTACAATA-GTGGC---CAATGTCTGTCTATATTCAAATGAC------TCT------ACT--------------------------CA--G-GT----AC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGTAAAGATTCACGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGTAAAATTCAATGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTTT---ACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTCT-AAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAAC----CTATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTACA--AACTTTG------Agttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--
gi|27 : tgT-TAGCT-T-CTCGTTTT-CCAATT-A-TATTT---GTG-GTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGTAT----AC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGTACAACTCC
gi|28 : TTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGAttgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTGC---TCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATATT---TCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAAC----CCAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG--AACTTTG------ATAT---AA------ATCCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCGCTTC-CAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G-AT----AC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGTAGCATTTAACGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCATT-AACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G-AT----AT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GTCAAATTCCATGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G-AT----AT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGTAAAATT-CACGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACA-GTGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G-AT----CC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGTTAACTTTCACGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G--AACTTTG------ATAG---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGTAAAATTGTACATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGTAAAATTCCACGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCGTTTT-T-AACC-G-TTTTTACAACA-GGGAT---CAACGACTca
gi|39 : AAATTCCACGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTTT-TATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------CGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGTAAAATTTTGTATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaacaCATGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : GTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTCT-TATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCT------TGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------AT-T---AA------GTCCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTGTTTC-CAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGTAAAATTTTGTATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTCC-TATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAAC----CCATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATACC--AAC----------AAAT---GA------GTTCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCATATT-CCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G-AT----TC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGTTAAATTCCACGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTTT---TCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTCT-TATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACG-TTTTAA---A--AGATTCTACAC-CAAAATC-AATTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG--AACTTTG------ATAT------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACA-A-T---------------T---CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G-AT----AC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGTAAAAT-----------ATC-------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTGT-AATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCA-TTTTAA---C----ACTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-G---TTAGTACG--AACTTTA------ATATCCGAAT-----TTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-ATGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGTAAAATTTCACGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----ACATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 1111
lowQualScore : 111 333 7777777 1 1 1 1 22 1 3 0 777777 1 0 44 1 2 22 4444 666666 44 22 1 44 1 22 44 555555 4444 777777 1 1 333 1 1 1 1 1 3 1 555 666666 66666 5 0000 1 22 22 22 1 3333 222 444444 22 33 0 444444 222 0 1 1 22 3333 3333 44444
lowQualScore : ... ... ....... . . . . .. . . . ...... . . .. . . .. .... ...... .. .. . .. . .. .. ...... .... ...... . . ... . . . . . . . ... ...... ..... . .... . .. .. .. . .... ... ...... .. .. . ...... ... . . . .. .... .... .....
lowQualScore : 444 999 2222222 9 8 7 7 33 7 6 6 444444 7 5 88 7 0 88 7777 444444 77 88 8 33 8 55 11 000000 5555 000000 7 7 000 7 7 7 7 7 5 7 888 777777 77777 7 0000 8 44 44 33 6 4444 888 666666 22 77 9 444444 777 2 5 6 11 3333 5555 22222
consensus : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTTT---CCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACGA-AAC--TG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCATTTC-CAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G-AT----A----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGCAAAA-TT-CATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTTT-TCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----CCATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTCT-AATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAAC----CCTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG--AACTTCG------ACAA---AA------GTCC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGGTTTC-CCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G-AA----AC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGTAAAATTT-TA-AGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA--AACTTTA------ATAG---TA------GTGCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCGTTTC-CCAACC-A-TTGTTACA--A-GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A-AT----A----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCACG--------------TGTAAGATTT-CA-CGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTCT-AAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa-AT----AT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAAATT-TA-CGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAAC----CCATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG--AATTTTG------ATAT---AA------ATCTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGGTGC-CCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A-AA----AC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGTAAATTTT-CA-AATGA--ATCTTca
gi|15 : T-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG--AACTTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTG-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTTGAATTTT-CA-CGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGAT-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG--AA-TTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTT-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT------------TTT-CA-CGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAAT----CCCGAAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------GTAT---AG------GTCCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTGTTTT-CAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTTT---TTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAATTT-C--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT-TAC---ATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG--ATCTCTG------ATAT---TA------GTCCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTCTTTC-CCAATC-
gi|19 : -CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAAC----CCATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG--GACTTTG------ACAC---GA------GTCCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGTTTC-CCAACC-A-ATTTTACAACA-ATGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G-AT----AC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTTT---TCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTCT-AATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAAC----TTATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------ATAT---CA------GTCGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--A-ATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGTAAAATTT-CA-CGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------ACTCAAATT-TCTTCA-A---AAT-GTTTT-AACTCATTTT-CCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G-CT----ATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGTATAATTT-GA-CACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA--TA--TAG------ATAT---AAATTGAGGTTGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTGT----CAAACC-A-TTTCTATAACA-ATGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T-AT----AC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTA-------------ACAATTTCCA-CATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTCT-AATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAAC----ACATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA--AACTTTG------ATAT---CA------GCCCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATATTTC-CCAACC-A-TTTTTACAATA-GTGGC---CAATGTCTGTCTATATTCAAATGAC------TCT-----A---CT------------------------CA--G-GT----AC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGTAAAGATT-CA-CGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGTAAAATTC-AA-TGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTTT---ACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTCT-AAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAAC----CTATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTACA--AACTTTG------Agttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--
gi|27 : tgT-TAGCT-T-CTCGTTTT-CCAATT-A-TATTT---GTG-GTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGTAT----AC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGTACAACTC-C
gi|28 : TTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGAttgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTGC---TCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATATT---TCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAAC----CCAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG--AACTTTG------ATAT---AA------ATCCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCGCTTC-CAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G-AT----AC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGTAGCATTT-AA-CGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCATT-AACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G-AT----AT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GTCAAATTC-CA-TGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G-AT----AT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGTAAAA-TT-CA-CGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACA-GTGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G-AT----CC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGTTAACTTT-CA-CGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G--AACTTTG------ATAG---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGTAAAATTG-TA-CATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGTAAAATTC-CA-CGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCGTTTT-T-AACC-G-TTTTTACAACA-GGGAT---CAACGACTca
gi|39 : AAATTC-CA-CGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTTT-TATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------CGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaaca-CA-TGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : GTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTCT-TATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCT------TGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------AT-T---AA------GTCCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTGTTTC-CAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTCC-TATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAAC----CCATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATACC--AAC----------AAAT---GA------GTTCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCATATT-CCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G-AT----TC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGTTAAATTC-CA-CGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTTT---TCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTCT-TATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACG-TTTTAA---A--AGATTCTACAC-CAAAATC-AATTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG--AACTTTG------ATAT------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACA-A-T---------------T---CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G-AT----AC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGTAAAATAT-C-------------------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTGT-AATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCA-TTTTAA---C----ACTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-G---TTAGTACG--AACTTTA------ATATCCGAAT-----TTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-ATGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGTAAAATTT-CA-CGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----ACATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 1111
lowQualScore : 111 333 7777777 1 1 1 1 22 1 3 0 777777 1 0 44 1 2 22 4444 666666 44 22 1 44 1 22 44 555555 4444 777777 1 1 333 1 1 1 1 1 3 1 555 666666 66666 5 0000 1 22 22 22 1 3333 222 444444 22 33 0 444444 222 0 1 1 22 3333 3333 44444
lowQualScore : ... ... ....... . . . . .. . . . ...... . . .. . . .. .... ...... .. .. . .. . .. .. ...... .... ...... . . ... . . . . . . . ... ...... ..... . .... . .. .. .. . .... ... ...... .. .. . ...... ... . . . .. .... .... .....
lowQualScore : 444 999 2222222 9 8 7 7 33 7 6 6 444444 7 5 88 7 0 88 7777 444444 77 88 8 33 8 55 11 000000 5555 000000 7 7 000 7 7 7 7 7 5 7 888 777777 77777 7 0000 8 44 44 33 6 4444 888 666666 22 77 9 444444 777 2 5 6 11 3333 5555 22222
consensus : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTTT---CCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACGA-AAC--TG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCATTTC-CAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G-AT----A----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGCAAAA-TT-CATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTTT-TCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----CCATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTCT-AATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAAC----CCTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG--AACTTCG------ACAA---AA------GTCC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGGTTTC-CCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G-AA----AC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGTAAAATTT-TA-AGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA--AACTTTA------ATAG---TA------GTGCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCGTTTC-CCAACC-A-TTGTTACA--A-GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A-AT----A----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCACG--------------TGTAAGATTT-CA-CGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTCT-AAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa-AT----AT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAAATT-TA-CGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAAC----CCATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG--AATTTTG------ATAT---AA------ATCTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGGTGC-CCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A-AA----AC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGTAAATTTT-CA-AATGA--ATCTTca
gi|15 : T-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG--AACTTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTG-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTTGAATTTT-CA-CGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGAT-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG--AA-TTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTT-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT------------TTT-CA-CGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAAT----CCCGAAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------GTAT---AG------GTCCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTGTTTT-CAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTTT---TTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAATTT-C--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT-TAC---ATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG--ATCTCTG------ATAT---TA------GTCCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTCTTTC-CCAATC-
gi|19 : -CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAAC----CCATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG--GACTTTG------ACAC---GA------GTCCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGTTTC-CCAACC-A-ATTTTACAACA-ATGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G-AT----AC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTTT---TCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTCT-AATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAAC----TTATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------ATAT---CA------GTCGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--A-ATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGTAAAATTT-CA-CGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------ACTCAAATT-TCTTCA-A---AAT-GTTTT-AACTCATTTT-CCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G-CT----ATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGTATAATTT-GA-CACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA--TA--TAG------ATAT---AAATTGAGGTTGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTGT----CAAACC-A-TTTCTATAACA-ATGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T-AT----AC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTA-------------ACAATTTCCA-CATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTCT-AATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAAC----ACATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA--AACTTTG------ATAT---CA------GCCCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATATTTC-CCAACC-A-TTTTTACAATA-GTGGC---CAATGTCTGTCTATATTCAAATGAC------TCT-----A---CT------------------------CA--G-GT----AC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGTAAAGATT-CA-CGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGTAAAATTC-AA-TGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTTT---ACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTCT-AAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAAC----CTATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTACA--AACTTTG------Agttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--
gi|27 : tgT-TAGCT-T-CTCGTTTT-CCAATT-A-TATTT---GTG-GTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGTAT----AC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGTACAACTC-C
gi|28 : TTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGAttgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTGC---TCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATATT---TCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAAC----CCAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG--AACTTTG------ATAT---AA------ATCCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCGCTTC-CAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G-AT----AC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGTAGCATTT-AA-CGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCATT-AACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G-AT----AT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GTCAAATTC-CA-TGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G-AT----AT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGTAAAA-TT-CA-CGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACA-GTGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G-AT----CC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGTTAACTTT-CA-CGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G--AACTTTG------ATAG---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGTAAAATTG-TA-CATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGTAAAATTC-CA-CGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCGTTTT-T-AACC-G-TTTTTACAACA-GGGAT---CAACGACTca
gi|39 : AAATTC-CA-CGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTTT-TATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------CGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaaca-CA-TGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : GTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTCT-TATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCT------TGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------AT-T---AA------GTCCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTGTTTC-CAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTCC-TATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAAC----CCATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATACC--AAC----------AAAT---GA------GTTCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCATATT-CCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G-AT----TC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGTTAAATTC-CA-CGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTTT---TCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTCT-TATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACG-TTTTAA---A--AGATTCTACAC-CAAAATC-AATTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG--AACTTTG------ATAT------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACA-A-T---------------T---CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G-AT----AC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGTAAAATAT-C-------------------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTGT-AATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCA-TTTTAA---C----ACTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-G---TTAGTACG--AACTTTA------ATATCCGAAT-----TTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-ATGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGTAAAATTT-CA-CGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----ACATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
blockSeqs : TTT TGC . A A T C GG A G TTTC G TA T C AC . ACGGCG TA AC G TA T AC CA GTATTG CCGA ATTGAG G T AAT C C A T A T . CAA ATTTTT TTGTC G TCGA A GA CT TT T CCAT CCA ATATTA TT AA GTACAT TAT C . TG AAGT GTCC ACAAT
blockSeqs : TT . . . . . . . . G CAG . TA . . . . . C A . A . . . . A T . . . . . . . . T . CAA A GA G TC . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . T A . . . . . . A . . . . . . . . . . . . . . G TC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . C A . . . . . . T . . . . . . . . . . . . . . G TC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A A . . . . . . A . . . . . . . . . . . . . . G TT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A C . . . . . . C . . . . . . . . . . . . . . A TT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A C . . . . . . C . . . . . . . . . . . . . . T CC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A A . . . . . . A . . . . . . . . . . . . . . A TA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A A . . . . . . T . . . . . . . . . . . . . . A CC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . A G . . . . . . G . . . . . . . . . . . . . . G GC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . A A . . . . . . C . . . . . . . . . . . . . . G TC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . C A . . . . . . A . . . . . . . . . . . . . . T TC . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . T A . . . . . . A . . . . . . . . . . . . . . G T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . T A . . . . . . C . . . . . . . . . . . . . . G T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . A C . . . . . . A . . . . . . . . . . . . . . G T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A C . . . . . . A . . . . . . . . . . . . . . A C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A C . . . . . . A . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C C . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ******* **** **
originalCons : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
finalCons : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA
Alignments
lowQualScore : 111 1111
lowQualScore : 111 333 7777777 1 1 1 1 22 1 3 0 777777 1 0 44 1 2 22 4444 666666 44 22 1 44 1 22 44 555555 4444 777777 1 1 333 1 1 1 1 1 3 1 555 666666 66666 5 0000 1 22 22 22 1 3333 222 444444 22 33 0 444444 222 0 1 1 22 3333 3333 44444
lowQualScore : ... ... ....... . . . . .. . . . ...... . . .. . . .. .... ...... .. .. . .. . .. .. ...... .... ...... . . ... . . . . . . . ... ...... ..... . .... . .. .. .. . .... ... ...... .. .. . ...... ... . . . .. .... .... .....
lowQualScore : 444 999 2222222 9 8 7 7 33 7 6 6 444444 7 5 88 7 0 88 7777 444444 77 88 8 33 8 55 11 000000 5555 000000 7 7 000 7 7 7 7 7 5 7 888 777777 77777 7 0000 8 44 44 33 6 4444 888 666666 22 77 9 444444 777 2 5 6 11 3333 5555 22222
consensus : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
Reference ( family-2419 ) : CTTTCATGATTTT---TCTCAGAACGAAATGAACTGAAGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATCGCGCATCATTT-CGAACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATA-TTTTAGAGAACAAC-C--GA-GT--TTAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-GTGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGGAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATATCGATGTAAAATTT-CA-CGTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTCGAACACCCCT
gi|1 : CTTTCATGCTTTT---CCGAAGAACAAAATGAACTGAAAATAGTGAAA---CGCCTGCAATGCGTGCTCAGTGCTGTATAATGCACATTT-TATCGCGCATCATTT-CTCACAATTTCTCT-AATTT-TAGACACGATTTTC--TTACAT-GTTACTATCTTTAGCCGACCAGATTT-TGCATCATTTTTAA---T--AGACTCTACAC-CAGAATCAAATTTCTTT--TT-CCATCTACGAACTGTCTCGTAAGAC-T--CTTTCGTCAGCCAAGCCATTAACCCG------TGTGATTTCATTAAAA-ATATA-TTTTAGAGAACAAC-C--GA-AT--TTAGTACGA-AAC--TG------ATAT---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTCATTTC-CAAACA-A-TTTTTACAACAGGTTGT---CAACAACTGCCTATATTGAAATGAC------TAT-----AACTCTAGAATC--CCCTG-TTT--CA--GCA--G-AT----A----A------TG--TATAAAC--CATTGTGCAG------GT---ATTGAATAGAGCTATCCATACGTATAAATATCGATGCAAAA-TT-CATCATGA--ATTTTACGCGA----CTTATA----AATGC-----ACAATACATTTTGAACACCCCT
gi|10 : TTCATGTTTTTTT-TCTCAGAACGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-ATTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----CCATAAACTCG------TGTGATGTCATCAAAA-CT-TACTTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTGGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATT
gi|11 : CTCT-AATTT-GAGACACGAATTTC--TTACAT-GTTGCTGTCTTTAGCCGAAGAGATAT-TGTTGCAC----AC---C--AAACTCCACAC-CAGACTCAAATTTATTT--TT-CAATCTACAAATTTTCTC------------TTTCGTCAAC----CCTTAAACCCT------CCTGACTTTATCAAAA-TT-TA-TATTAGAGAACAAC-C--GA-AA--TTAGTACG--AACTTCG------ACAA---AA------GTCC-AATG-TCCTCA-T---TTT-TTGCT-A-CTGGTTTC-CCAACA-A-CTTTTACAA----TGGT---CAACGAATGTCTACATTGGAATGAC------TAGGA---AACTCTGGAATC--CCGTG-GTT--CA--GCA--G-AA----AC---A------TG--TATATAC--CATTGTGTAT------GT---TTTGAATAGAGCTATCCATGCTTATAGATATCGATGTAAAATTT-TA-AGTGG--ATTTAGAGCTA----CTTATA----AATAC-----ATAATGCATTTCGAACACCC
gi|12 : CAAAATGAACTGAAGATAGTGAAA---CGCATGCAACACGTGCT-------ATATCACGCACATTA-TAACGCGCATCATCT-CGAACAAGTTCTCA-AATTT-TAGACAACATTT----TTACAT-GTTGCTGTATTT-GCTGAC-----TT-TACTGCATTTTTAA---C--ATACTCTATA-----------------------------TACGAACTGCCTCACAAGAC-A--CTT----------------------G------TGTGTTTTCATCAAA----------------ACCAAC-C--GA-GTACTCAGTACA--AACTTTA------ATAG---TA------GTGCAACTG-TCTTCA-T---TAT-TTGTT-A-TTCGTTTC-CCAACC-A-TTGTTACA--A-GTGGT---CAACGACTGCATATATTAAAATAACA-----TAT-----AAtcg
gi|12 : A--A-AT----A----A------CA--TATAAAC--CATTGTGTAT------TT---ATTGAATATAGCTATCCACG--------------TGTAAGATTT-CA-CGTGT--ATATTGTGTGA----AATATA----AATAC-----ACAATGCATTTTGAACACCCCTaccattgtgtatttattgaatatagctatccacgtgtaagatttcacgtgtatattgtgtgaaatataaatacacaatgcattttgaacacccctcgt
gi|13 : caaaatgaactgaagatagtgaaacgcatgcaacacgtgctatatcacgcacattataacgcgcatcatctcgaacaagttctcaaattttagacaacatttttacatgttgctgtatttgctgactttactgcatttttaacatactctatatacgaactgcctcacaagacacttgtgtgttttcatcaaaaccaaccgagtactcagtacaaactttaatagtagtgcaactgtcttcattatttgttattcgtttcccaaccattgttacaagtggtcaacgactgcatatattaAGTGACA---AGCCTGCAACGCGTGCT-------ATATCACGCA-GTTA-CATCGCGCATCATTT-CAAACAAATTCTCT-AAATT-TAGACACGATTTTC--TTACCT-GTTGCTATTTTTGGCCGACAAAATTT-TGCTACATTTTAAA---C----ACTCTACAC-CAGAATCAAATTTATTT--TT-CAATATATGAACTGTCTCCTAAcgt
gi|13 : gtaatgcatgctgtaaa-AT----AT---A------TA--TATATAT--AATTAAGTAG------GT---ATTGAAAAGAGCTATCTATGCGTATAAGTATCGATGTAAAAATT-TA-CGTGA--ACTTTGCGCAA----CCT-------AATAC-----ACAATAAATTTCGAAAAACTCTcagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatatatatatatatataattaagtaggtattgaaaagagctatctatgcgtataagtatcgatgtaaaaatttacgtgaactttgcgcaacctaatacacaataaatttcgaaaaactctca
gi|14 : gtaatgcatgctgtaaaagtgacaagcctgcaacgcgtgctatatcacgcagttacatcgcgcatcatttcaaacaaattctctaaatttagacacgattttcttacctgttgctatttttggccgacaaaattttgctacattttaaacactctacaccagaatcaaatttatttttcaatatatgaactgtctcctaacagtggttaaaactctgtaaatccgcttttcagcagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatatACATTG-TATCGCGCATCATTT-CAAACAACTTC-----------------------C--TT---T-GTTGCTGACTTTTACCGATCTTATTT-TGTTGCGTTTTTTTTTTC--AGACCCTACAC-CAGAGTTAAATATCTTT--TTTCCATCTAAGAATGGTCTCAAAAGAC-A--CTTTCGTCAAC----CCATAAACCTG------TATTATGT-AT---GA-CTATA-TTTTAGAGAACAGT-C--GA-GT--TTAATATG--AATTTTG------ATAT---AA------ATCTGAATT-TCCTCA-T---TAT-TTGCT-A-CTCGGTGC-CCAACG-A-TGTTAACAACA-GTGGC---CAA-GACTGCATCTGTTAAA-------------------AACTCTGGAATC--CCGTG-TTT--TA--GCA--A-AA----AC---A------GA--AATA-ACT-TATTGTGTAG------GT---ATTGA------CTA--CA-GCGTATAAATATCGATGTAAATTTT-CA-AATGA--ATCTTca
gi|15 : T-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATCttat
gi|15 : aATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-C--TA-AT--TTAGTACG--AACTTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTG-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTGTGAAGGTACATGT---ATTGAATAGAGCTATCCATGCGATTAAATATCGATTTGAATTTT-CA-CGTGA--ATTTTGAGTGA----CATATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatctaatttagtacgaactttgatatcagtccgaatttccttattatttgctgttcgtttgccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaaggtacatgtattgaatagagctatccatgcgattaaatatcgatttgaattttcacgtgaattttgagtgacatatatatacacaatacatttcgaacaatcct
gi|16 : ataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttatttt-TATCCCGCATCATTT-CGAACAATATCGAT-AATTT-TAAACATGATTTTC--GTATAT-GTTGCTGCCGTTGGCCGATCAGATTTGTTTTGCATTTTTAA---C--AGACTCTGCAT-CTGAATCTAATTTATTTTATT-TCATC
gi|16 : atggATTTCATCAAAA-ATACA-TTTTAAAAAACAAT-G--TA-AT--TTAGTACG--AA-TTTG------ATAT---CA------GTCCGAATT-TCCTTA-T---TAT-TTGCT-G-TTCGTTTT-CCAACC-A-TTTTTACAACA-GTGGTCAACAACGACTGCCTATATTGAAATGAC------TAT-----GCCTAT---AT-----ATG-C---------CA--G-AT----AT---A------CT--TATATAC--CATTG------------------TGAA------TATCGATGTG----AAT------------TTT-CA-CGTGA--ATTTTGAGTGA----CTTATA----TATAC-----ACAATACATTTCGAACAATCCTaaaaatacattttaaaaaacaatgtaatttagtacgaatttgatatcagtccgaatttccttattatttgctgttcgttttccaaccatttttacaacagtggtcaacaacgactgcctatattgaaatgactatgcctatatatgccagatatacttatataccattgtgaatatcgatgtgaattttcacgtgaattttgagtgacttatatatacacaatacatttcgaacaatcctcgt
gi|17 : atggtatcccgcatcatttcgaacaatatcgataattttaaacatgattttcgtatatgttgctgccgttggccgatcagatttgttttgcatttttaacagactctgcatctgaatctaatttattttAATCAACTGAATATAGTAAAA---CGCCTGCAATGTCTGCT-------ATGTCACGCACATAT-TGTCAAGAATGAATA-TGAATAATGTCTCT-AATTT-TAGACACGATTTTC--TCACAT-GTTGCAGTCTTTGGCCGAAAACAATT-TCCTGCAATTTTAA---CAGAGACTCTATAC-CAGAATCAAATTCTGTT--TT-TCATCTACGAACTGTTTCATAAGAC-A--CTTTCGTCAAT----CCCGAAACTCA------TGTGATTTCATC-AAA-ACATC-TTTAAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------GTAT---AG------GTCCGAATT-TCCTCG-T---TAT-TTGCT-A-CTTGTTTT-CAAACC-G--TTTTACAACA-GCGGT---CAACGACTGCCTATATTcgt
gi|18 : TTCATGATTTT---TTTCAGAACGAAATTAACTGAAGATAGTGAAA---CTCCCGCAATGCGTGCA-------ATATCACTCACATTA-TTTCGCACATCATTT-CGAACAATTTCTCTTAATTT-AAGACACAATTT-C--TTACAG-TTTGCTGTTTTTGGTCGACCAAATTT-TAC---ATTTCTAA---C--AGACTATACAAGCAGACTCA----TTTGT--TT-CCATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------TGTGATTTTGGCAAAA-ATATC-TTTTAGAGAATAAC-C--GA-GT--TTAGTACG--ATCTCTG------ATAT---TA------GTCCGAATT-CCTTCA-T---TAT-TTGCT-A-GTTCTTTC-CCAATC-
gi|19 : -CAGATTCAAATTTCTTT--TA-CCATCTACAAACTTTCTCATAAGACCA-----TCATCAAC----CCATAAATCCG------TGTGATTTCATTAAAA--TATA-TTTTAGAGGACAAC-C--GA-GT--TTAGTACG--GACTTTG------ACAC---GA------GTCCGATTA-TCCTCA-T---TACCTTGCT-A-CTCGTTTC-CCAACC-A-ATTTTACAACA-ATGGT---CA-------CCT-----GAAATGAC------TAT-----AAC-ATGGAATC--CTGTG-TTT--CA--GCA--G-AT----AC---A------TG--TTTATAC--TATTGTGTAG------GT---ATTGAATAGAGCTATTCATGAGTATAAA
gi|2 : CTTTCATGATTTT---TCTCAGAACAAAATTAACTGAAGATAGTGAAA---TGCCTGCAATGCGTGCT-------TTTTCACGCACATTG-TATTGCGCATCATTT-CAAACATTTTCTCT-AATTG-TAGACACGAATTTC--TTAAAT-GTTGCTGTCTTTGGTCGACCAGATTT-TG------------------AAACTCTACAA-CAGAATC--------TT--TT-CCATCTACAAACTCTCTCATAAGAC-A--CTTAAGTCAAC----TTATAAACCCGACGGCGTGTGATTTCATTAAAA-ATACA-TTTTAGAGAACAAC-C--AA-GT--TTAGTACG--AACTTTG------ATAT---CA------GTCGGAATT-TCCTTA-T---TTT-TTGCT-A-ATTGTTTTTCCAATC-A-TTTTAACAACA-GTGGT---CAACGACTGTCTATAACGAAATGAC------TAT-----AACTCTGGAATT--GCGTG-TTT--CA--GCA--A-ATCCATAC---A------TG--TATAT----CATTGTGTAA------GT---ATTTATAAGAACTATCTAAACGTATAAATATCGATGTAAAATTT-CA-CGCAA--ATTTTGCTCGA----CTCATA----AATAC-----GCAATACATTTCGAACACCGCTaacaatacttttcgaatacccctcgtat
gi|20 : TTCAGTAAAA-ATCTG-TTTTATTGAAAGGC-CTAGATGT--TT--TACGCAAACTTTGGTATTGATAT---AA------ACTCAAATT-TCTTCA-A---AAT-GTTTT-AACTCATTTT-CCAACC-A-ATTTTATAACA-GTGGT---CAACATTTGCCTATTTTGAAATGAT------AAT-----TATTTTATAA----CTGTA-TTG--AA--CTG--G-CT----ATCCAA------TG--TATACACAACACTTTCAAG------AT---AGCGAATA----TATCTAC---TATTAAAATCAATGTATAATTT-GA-CACGATGATATCGTG--------TTATAGTCCAATAC-----ATATTACATACTGAACAGCCCT
gi|21 : TTCA-CAAAATACATA-TTTTTGC--ACAAA-C------T--TCAATATA--TA--TAG------ATAT---AAATTGAGGTTGAAATT-TCTTCA-A---TAT-ATTTT-A-ATTGT----CAAACC-A-TTTCTATAACA-ATGGT---CAATGGCTGACTGTATTAAAATGTCATTTTTTAT-----AATTATTAAA-C--TAGAGATTT--GT--GAA--T-AT----AC---A------TG------TAC--CATTGTCAAG------GT---AATAAATGTAGTTACTCATGTGTA-------------ACAATTTCCA-CATGA-----TTGCATAAAAGTCTT--------ATAC-----ACATTACATATTGAACAGCCCTt
gi|22 : aatttagtaaaaatttgcGAAATGAACTGATGATAGTGAAA---CGCCTGCAATGCGTGCT-------ATATCACGCACATTA-TATTGCGCATCATTT-CGAACAATTTCTCT-AATTT-TTGACACAATTTTC--TTACAT-GTTGCTGGCTATGGTCGACCAGATTC-TGCTGCA-TTTTAA---C--AGACTCTATAC-AAGAATCAAA----TTT--GT-CCATCTACGAACTGTCTTGTAAGAC-A--CTTTTGTCAAC----ACATACACCCG------TGATATTT
gi|23 : ACAACGCA-GA-GT--TCAGTACA--AACTTTG------ATAT---CA------GCCCGAATT-TCCTCA-TAATTAT-TTGCC-C-CATATTTC-CCAACC-A-TTTTTACAATA-GTGGC---CAATGTCTGTCTATATTCAAATGAC------TCT-----A---CT------------------------CA--G-GT----AC---A------TG--TATATA--------------------------TGAGTAGAGATATCCATTCGTAGAAATATCGACGTAAAGATT-CA-CGTAA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTagctcagttaattgtagtgttattattcatgttatt
gi|24 : gaacccttatcatatgagctttctcgattcgTTGTGTAG------GT---ATTGAATAGAGCTATCCATGCGTATAAATA--AATGTAAAATTC-AA-TGTGA--ATTTTGAGCGA----TTc
gi|25 : CTTTCATGATTTT---ACTCAAAACGAAATGAACTTAAGATAGTGAAA---C--------------------------------ATATTA-TATCGCGCATCATTT-CAAACATTTTCTCT-AAATT-TAGATGTGTTTTCC--TTACA-------TGTCTTTGGCCGACCAGAATT-TGCTGCATTTTTA-------AGACTTCACAC-CAGAATCAAATTTCTTT--TT-CCA-----------TCTCATAAGAT-A--CTTTCAGTAAC----CTATAAAACAC------TGTGATTTCATCAAGA-ATA------TCGAGAACAAC-T--GA-GT--TTAGTACA--AACTTTG------Agttacaatgttaaaagtataaacgtcgctaaaaggtatagcggtgttaaaagtaaaaaataaaataacgttaaaagtagaaaggtggttaaatgtaaactctatttcctttgctaaaagtaaacaataaagtcattatattccgttgctaaaagtaaacaataaagtcatgatattgcgttgctaaa
gi|26 : aTTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCCTGCAGTGCGTGCT-------ATATCATGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTATTT-GATTT-TAGATATGATTTTC--TAACAA-GTTGCTGTCTTTGACCAACCAGATTT-TGCTGC-TTTTTAA---T--AGACTTTACAC-CAGAATTAAATTTCTTT--TT-TCATCAACAAACTGACTCATGAGAC-A--
gi|27 : tgT-TAGCT-T-CTCGTTTT-CCAATT-A-TATTT---GTG-GTGGC---CAACAACTGCTT-TGTTGAAATGAA------TATTTGTCACCTAT---ATCGATTGGG-TTGGACA--GTATTGTAT----AC---A------TG--TATAGAC----------AG------TT---ATTGAATAGGGCTA-CCGTGAAAATAAATGTTTGTGTACAACTC-C
gi|28 : TTCTTGATGTT---TCTCAAAACGAAATCAACTGAAGACAGTGGAA---TGCATGCAGTGCGTGCT-------ATATCACGTATATTA-TATCGCGCAGCATTT-CGAACAAGTTCTTT-GATTT-TAGACACGATTTTC--TTACAA-GTTGCTGTCTTTGACCAACCAGAttgtagttatcgagataacaatgatattgcattactgttgagacaaccctcatat
gi|29 : ttttcttaatgCTTTCATGATTGC---TCTTATAACGAAATGAACTGAAGATCGTATAATGCCGCCTGCAATACGTGCT-------ATATCACGCACATTT-TATCGCACATCATTT-CGAACAANNNNNNN-NNNTTCTGTGCACTACTTCCGGT----T-GTCGCTGTatcttataaactatataaaaataaactgaacagaac
gi|3 : agaatttttcCTTTCATGATATT---TCTTAGAACCAAATGAATTGAAGATAGTGAAA---CGTCTACGATGCATGTT-------TTATCACGCA--TTAATATCGCGCATCATTT----A-AATTTCTCC-TATTT-TAGACACGATTGTC--TTATAT-GTTACTGTCTATGGTCGACCAGATTT-TGCTGCTTTTTTAG------AGACTCTACAG-CAGAATCAAATGTCTTT--TT-CCATCTACGAACTGTCTTATAAGAC-T--TTTTCGTCAAC----CCAAAAACACG------TTT-ATTTCATCATCA-CTATA-TTTTAGAGAACAAC-C--GA-GC--TCAGTACG--AACTTTG------ATAT---AA------ATCCAAATT-TCCTCA-A---TAT-ATGCT-A-CTCGCTTC-CAAACC-A--TTTTACAACA-CTTGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTATAGAATT--CCGTA--TT--CA--GCG--G-AT----AC---A------TG--TATATTT--CATTGTGTAG------GT---ATTGAAATGAGCTATCAGTGTGTAGAAATATCGATGTAGCATTT-AA-CGTGA--ATTTTGTGCGA----tatccaaattgcaacaagaggtcctattgcgt
gi|30 : CATTT-TCAATAATATCATT-AACTT-TTGAGAC-ATTATC--TGATAGAGTTA-------------ACCAGATTT-CCCATCATCCTTAA------AAACTCTACAC-CTGTATCATATT-CTAT--TT-CCATCTATGAACTGTCTCATAAGAT-A--CTTTCGtaatggcagtttagtaagtattaaaaatc
gi|31 : --CA--GCA--G-AT----AT---AATATTATG--TATGTGC--CATTGTGTAG------GT---ATTGAATAGAGCTAATCATGCGTATAAATA---A-GTCAAATTC-CA-TGTGA--ATTTTATGCGA----CTTATA----TTTAC-----ACAATGCATTTTGAACACCCCT
gi|32 : --CCGAG-TTT--CA--GCA--G-AT----AT---T------TG--TATGTAC--CATAGTGCAT------ATTATATTGAATAGACCTATTCATGTGTATAAATATCAATGTAAAA-TT-CA-CGTGA--ATTTTGCGCGA----CTTATA----A----------------ATTTTGAACACCCCTcg
gi|33 : TATAACA-GTGGT---CAACAACTAACTGCATTAAAATGAC------GGT-----TATTTTACAA----CTATG-TTG--AACTACA--G-AT----CC---A------TG--AATATAA--CATTGTCAAG------GT---AATAAACAGAACTAAGCATGTGAATCAATAcg
gi|34 : --CATTGTGTAG------GT---AT-AAATAGAGCTCTCCACGCGTATACATATCGATGTTAACTTT-CA-CGAGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAATACA-CCCGAACACCCCT
gi|35 : G--AACTTTG------ATAG---AA------GTCCGAATT-TCCTCA-T---TAT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTACAACA-TTGGT---CAATGGCTGCTTATATTAAAATGAC------TAT-----cg
gi|36 : tctGTATAAATATCGATGTAAAATTG-TA-CATGA--ATTTTTCGCGA----CCTATA----GATACACAATACAATACATTTCGAACACCCgc
gi|37 : TAAATATCGATGTAAAATTC-CA-CGTAA--ATTTTACTCAA----CTAATA----AATAC-----ACAATACATTTCGAACACTTCTag
gi|38 : AATT-CCCTCA-A---TAA-TATCT-A-CTCGTTTT-T-AACC-G-TTTTTACAACA-GGGAT---CAACGACTca
gi|39 : AAATTC-CA-CGTGA--ATTTTGCGTCA----CTTACA----AGTAC-----ATAATACATTCCAAACACCCCT
gi|4 : AAATGAACAAAAGATAGTGAAA---CGCCTGCAATGTGTGTC-------ATATCACTCAAATTA-TATCGCGCATCATTT-CGAACAATTTCTTT-TATAT-TAGACACGATTTTC--TTACAT-GTTGCTGTCTTTAGCCAACCAGATTT-TGCTGCATTTT----------GACTCTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCG------CGTGA-TTCTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------ATAT---AA------GTCCGAATT-TCCTCGTT---TTT-TTGCT-A-CTTGTTTC-CCAACC-A-TTTTTAGAACA-GTGGT---CAACGAGTGCCTATATTGAAATGAC------TAT-----TACTCTGGAACC--CCTTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGCGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGGCT----CTTATA----AATAC-----ACACTACATTTCGAATACCCCT
gi|40 : aaaaAATGAC------TAT-----AACTCTGAAATA--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TGTATAC--cc
gi|41 : CACGA----CCTATA----AACAT-----ACAATACATTTCGAATACCCCTgtg
gi|42 : cgttgtaaca-CA-TGTGA--ATTTTGCACGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCcata
gi|43 : GTGA--ATTTTGCGCGA----CTTATA----AATAC-----ACAAT--ATTTCGAATATCttcg
gi|45 : tTGTACTGAAGATAGTGACA---CGCCTGCAATACGTGCttcgt
gi|5 : GAAAAAAATGAACTGAAGATAGTGAAA---CGCCTGCAATATGTGTC-------ATATCACTCAAATTA-TATCGTGCATCATTT-CGAACAATTTCTCT-TATAT-TAGACACGATTTTC--TTACAT-GTCGCTGTCTTTAGCCAACAAGATTT-TGTTGCATTTT----------GACTTTTCAC-CAGAATCAA---TCTTT--TT-CAATCTACGAACTGTCTCATAAGAC-A--CTTTCGTCAAC----CCATAAACCCT------TGTGATT-CTTTAAAA-TTATA-TTTTGGAGAACAAC-C--GA-GT--TCAGTACG--AACTTTG------AT-T---AA------GTCCGAATT-TCCTCA-T---ATT-TTCCTCA-CTTGTTTC-CAAACA-A-TTTTTAGAACA-GTGGT---CAACGCCTGCCTATATTGAAATGAC------ATT-----TACTCTTGAACC--CCCTG-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CACTGTGTAA------GC---ATTAAATAAAGCTATCCATGAGTATACATATCAATGTAAAATTT-TG-TATGT--ATTTTGCGCCA----C-----------TAC-----ACAATACATTTCGAATACCCCTcgt
gi|6 : TGAACTGAAGATAGTCAAA---CGCCTGCA----------------------TGTACATTA-TATCGCACAT-ATTTACGAACAATTTCTCC-TATTT-TAGACATGATTTCC--TTACAT-GTTGATATCAGTGGCCGACCAGATTT-TGCTGCATTTTTAA---C--AGACTCTAAAC-CAGAATCAAA-TTCCAT--TT-CCTTCTACGGACTGTCTCATAAGAA-A--CTTTCGTCAAC----CCATAAGCCCG------TGTGATTTCATCCAAA-ACATC-TTTTAGAGTACAAC-C--GA-GT--TTAATACC--AAC----------AAAT---GA------GTTCAAATT-GCCTTA-T---TAT-TTGCT-T-CTCATATT-CCAACCAA-TTTTTACAACA-GTGAT---CAACGACTGCGTATATCAAAATGAC------TAT-----AACTCTGGAAGC--GCGTA-TTT--CA--GCA--G-AT----TC---A-------G--TATTTAC--TATTGTGTAG------GT---ATTGA--------ATCCACGCGAATATACATCGATGTTAAATTC-CA-CGTGA--ATTTTGCTAGA----CTTATC----AATAT-----ACAATACATTTT-AAC-CCTCTcc
gi|7 : CTTTTATGATTTT---TCTCAAAACGAAATc
gi|7 : taa-------ATATCACGCACATTA-TATTGCAAATCATCT-TGAACAATTTCTCT-TATTT-TAGACACGATTTTT--TGACAT-GTTGCTGTCTTTGGCCGACCAGATTG-TGCTACG-TTTTAA---A--AGATTCTACAC-CAAAATC-AATTTTTCT--TT---------------TCTTATAAGAC-AACTTTTTATAAAC----CCATAAACCCG------TGTGATTTCATCAAAA-ATATC-ATTTAGAAAACAAC-C--GA-GT--TTACTTCG--AACTTTG------ATAT------------------TTGTTTTCA-T---TAT-TTGCT-A-CTCGTTTC-CCAACA-A-T---------------T---CAACAACTGTCTGTATTGAAATGAC------AAT-----AACTCTGGAATC--TCGTG-TTT--AA--GCA--G-AT----AC---A------TGTTTATAAAC--CATTGTTTAG------GT---ATTAAATAGAACTATTCTTGTGTATAAATATCGATGTAAAATAT-C-------------------A----CTTATA----AATAC-----ACAATACATTTCGAACACCCTTatcacgcacattatattgcaaatcatcttgaacaatttctcttattttagacacgattttttgacatgttgctgtctttggccgaccagattgtgctacgttttaaaagattctacaccaaaatcaatttttcttttcttataagacaactttttataaacccataaacccgtgtgatttcatcaaaaatatcatttagaaaacaaccgagtttacttcgaactttgatatttgttttcattatttgctactcgtttcccaacaattcaacaactgtctgtattgaaatgacaataactctggaatctcgtgtttaagcagatacatgtttataaaccattgtttaggtattaaatagaactattcttgtgtataaatatcgatgtaaaatatcacttataaatacacaatacatttcgaacacccttcgt
gi|8 : taacttttatgatttttctcaaaacgaaACATTA--ATCGCGCATCATTT-CGATCAATTTCTGT-AATTT-TAGAATCGATTTTT--TTACTT-ATTGCTGTCTTTGGCCGACGAGATTT-TGCTGCA-TTTTAA---C----ACTCTATAC-CAGAATTAAATTTCTTT--TT-CCATCTACGAAATGACTCATAAGAT-A--ATT-----------------AACGCG------TGTGATCCCATTAAAA-ATATC-TTTTAGAGAACAAC-C--AA-G---TTAGTACG--AACTTTA------ATATCCGAAT-----TTCCGTATT-TTCTCA-T---TGT-TTGCT-A-CTCGTTTC-CCAACC-A-TTTTTACAACA-ATGGT---CAACGACTGCCTATATTGAAATGAC------TAT-----AACTCTGAAATC--CCGTG-TTT--CA--GCA--G-AT----AC---A------TG--TATAAAC--CATTGTGTAG------GT---ATTGAAAAGAGCT-TCCATGCGTATAACAATCGATGTAAAATTT-CA-CGAGA--ACTTTGCGTGG----CTTATA----AATAC-----ACAATACATTTTGAACACCCCTcgt
gi|9 : TTTCATGTTTTTTTTTCTCAGAATGAAATGAACTGAAGACAGTGAAA---TGCCTGCAATGCGTGCT-------GTATCACGCACTTTA-TACCGCGCATCATTT-CAAACAATTTCTCT-AAAAC-AAAACACGATTTCC--TTACAT-GTTGCTGTGTTTGATCGACCACATTT-TGCTGCATTTTTAA---C--AGA--CTACAC-CAGAATTAAATTTCTTT--TT-CCA-----------TCTCATAAGAC-A--CTTTCGCCAAT----ACATAAACTCG------TGTGATGTCATCAAAA-CTAAC-TTTTAGAGAACAAC-C--GA-GA--TTAGTACG--AACTTTG------ATAT---AA------GTCCAAATT-TCTTCA-T---TAT-TTGCT-A-CTCGTTTC-CGAGTC-ATTTTTTACAACA-GCAGT---CAACGACTGCCTATATTGAAATGAC------TA---------TCTAGGAT---CCGTA-TTT--CA--GCA--G-AT----AC---A------TG--TATATAC--CATTGTGAAG------GC---ATTcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): GAATCTTATAAACTATATAAAAATAAACTGAACAGAACA