lowQualScore                  :          6             444              2     2                         
lowQualScore                  :          .             ...              .     .                         
lowQualScore                  :          0             444              5     5                         
consensus                     : ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
Reference ( gi|9 )            : ATTCATACACTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
gi|2                          : ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|8                          : ATTCATACATTTTATTTCCATAT---TATAATTTTAGTTT-CTTTT-TTTATATTTTCATGGAAAATGATGAt
gi|7                          : ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTA-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|6                          : ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCGTGGAAAATGATGA
gi|10                         : ATTCATTCATTTTATTTCCATAT---AAAAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATG
gi|4                          : ATTCATACATTTTATTTCCATAT---AATTATTTTAGTTT-CCTTA-TTTATATTTTCATGGAAAATGGTGA
gi|12                         : ATTCATACATTTGATTTCCATAT---AATAATTTAAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGt
gi|1                          : ATTCATACATTTTATTTCCATATTATAACAATTTTAGTTAACCTTT-TTTATATTTTCATGGAAAATGATGA
gi|15                         : ATTTATACATTTTATTTCCATAT---AATGATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|5                          : ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTACATTG-AATTGATGA
gi|14                         : ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAt
gi|13                         : ATTTATTCATTTTATTTCCATAT---A-TA--TTTAGTTT-CCTTG-TTTATATTTTCATGGAAAATGATGA
gi|17                         : ATTCATACATTTTATTTCCATAC---AATAATTTTAGTTT-CCTTT-TTT
gi|11                         :  TTCATACATTTTATTACCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|16                         :  TTTATACATTTTATTTCCATAT---TATAGTTTTAGTTT-CCTTT-TTTATATTTTCATGGA
gi|3                          :  gTCTTACATTTTGTTTCCATTT---CATAATTTTAGTTT-CCCTTAATGATATTTTTATGAAAAATAATGA

lowQualScore                  :                         444              2     2                         
lowQualScore                  :                         ...              .     .                         
lowQualScore                  :                         111              4     4                         
consensus                     :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
Reference ( family-24 )       :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
gi|1                          :  ATTCATACATTTTATTTCCATATTATAACAATTTTAGTTAACCTTT-TTTATATTTTCATGGAAAATGATGA
gi|10                         :  ATTCATTCATTTTATTTCCATAT---AAAAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATG
gi|11                         :   TTCATACATTTTATTACCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|12                         :  ATTCATACATTTGATTTCCATAT---AATAATTTAAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATG
gi|13                         :  ATTTATTCATTTTATTTCCATAT---A-TA--TTTAGTTT-CCTTG-TTTATATTTTCATGGAAAATGATGA
gi|14                         :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|15                         :  ATTTATACATTTTATTTCCATAT---AATGATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|16                         :   TTTATACATTTTATTTCCATAT---TATAGTTTTAGTTT-CCTTT-TTTATATTTTCATGGA
gi|17                         : gATTCATACATTTTATTTCCATAC---AATAATTTTAGTTT-CCTTT-TTT
gi|2                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|3                          :    TCTTACATTTTGTTTCCATTT---CATAATTTTAGTTT-CCCTTAATGATATTTTTATGAAAAATAATGAt
gi|4                          :  ATTCATACATTTTATTTCCATAT---AATTATTTTAGTTT-CCTTA-TTTATATTTTCATGGAAAATGGTGAta
gi|5                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTACATTG-AATTGATGAt
gi|6                          :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCGTGGAAAATGATGAt
gi|7                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTA-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|8                          :  ATTCATACATTTTATTTCCATAT---TATAATTTTAGTTT-CTTTT-TTTATATTTTCATGGAAAATGATGA
gi|9                          :  ATTCATACACTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA

lowQualScore                  :                         444              2     2                         
lowQualScore                  :                         ...              .     .                         
lowQualScore                  :                         111              4     4                         
consensus                     :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
Reference ( family-24 )       :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
gi|1                          :  ATTCATACATTTTATTTCCATATTATAACAATTTTAGTTAACCTTT-TTTATATTTTCATGGAAAATGATGA
gi|10                         :  ATTCATTCATTTTATTTCCATAT---AAAAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATG
gi|11                         :   TTCATACATTTTATTACCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|12                         :  ATTCATACATTTGATTTCCATAT---AATAATTTAAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATG
gi|13                         :  ATTTATTCATTTTATTTCCATAT---A-TA--TTTAGTTT-CCTTG-TTTATATTTTCATGGAAAATGATGA
gi|14                         :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|15                         :  ATTTATACATTTTATTTCCATAT---AATGATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|16                         :   TTTATACATTTTATTTCCATAT---TATAGTTTTAGTTT-CCTTT-TTTATATTTTCATGGA
gi|17                         : gATTCATACATTTTATTTCCATAC---AATAATTTTAGTTT-CCTTT-TTT
gi|2                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|3                          :    TCTTACATTTTGTTTCCATTT---CATAATTTTAGTTT-CCCTTAATGATATTTTTATGAAAAATAATGAt
gi|4                          :  ATTCATACATTTTATTTCCATAT---AATTATTTTAGTTT-CCTTA-TTTATATTTTCATGGAAAATGGTGAta
gi|5                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTACATTG-AATTGATGAt
gi|6                          :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCGTGGAAAATGATGAt
gi|7                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTA-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|8                          :  ATTCATACATTTTATTTCCATAT---TATAATTTTAGTTT-CTTTT-TTTATATTTTCATGGAAAATGATGA
gi|9                          :  ATTCATACACTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA


blockSeqs                     :                         .                .     A
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .
blockSeqs                     :                         .                .     .


blockSeqCons                  :                         ***
originalCons                  :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
finalCons                     :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA

lowQualScore                  :                         444              2     2                         
lowQualScore                  :                         ...              .     .                         
lowQualScore                  :                         111              4     4                         
consensus                     :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
Reference ( family-24 )       :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA
gi|1                          :  ATTCATACATTTTATTTCCATATTATAACAATTTTAGTTAACCTTT-TTTATATTTTCATGGAAAATGATGA
gi|10                         :  ATTCATTCATTTTATTTCCATAT---AAAAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATG
gi|11                         :   TTCATACATTTTATTACCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|12                         :  ATTCATACATTTGATTTCCATAT---AATAATTTAAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATG
gi|13                         :  ATTTATTCATTTTATTTCCATAT---A-TA--TTTAGTTT-CCTTG-TTTATATTTTCATGGAAAATGATGA
gi|14                         :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|15                         :  ATTTATACATTTTATTTCCATAT---AATGATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAA
gi|16                         :   TTTATACATTTTATTTCCATAT---TATAGTTTTAGTTT-CCTTT-TTTATATTTTCATGGA
gi|17                         : gATTCATACATTTTATTTCCATAC---AATAATTTTAGTTT-CCTTT-TTT
gi|2                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|3                          :    TCTTACATTTTGTTTCCATTT---CATAATTTTAGTTT-CCCTTAATGATATTTTTATGAAAAATAATGAt
gi|4                          :  ATTCATACATTTTATTTCCATAT---AATTATTTTAGTTT-CCTTA-TTTATATTTTCATGGAAAATGGTGAta
gi|5                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTACATTG-AATTGATGAt
gi|6                          :  ATTCATACATTTTATTTTCATAT---TATAATTTTAGTTT-CCTTT-TTTATATTTTCGTGGAAAATGATGAt
gi|7                          :  ATTCATACATTTTATTTCCATAT---AATAATTTTAGTTA-CCTTT-TTTATATTTTCATGAAAAATGATGA
gi|8                          :  ATTCATACATTTTATTTCCATAT---TATAATTTTAGTTT-CTTTT-TTTATATTTTCATGGAAAATGATGA
gi|9                          :  ATTCATACACTTTATTTCCATAT---AATAATTTTAGTTT-CCTTT-TTTATATTTTCATGGAAAATGATGA