lowQualScore : 111111111 111 1 1 1 44444444444444444444444 66666 111 11 222222222222222 1 44444444 111111 1
lowQualScore : 6 33 0 2 444 5 5555 333333333 2 3 2 2 2 2 777 5 0 999 2 6 3 0 2 2 88888888888888888888888 5 2 6666 77777 999 77 77 6 66 555555555555555 4 2 5 5 77777777 111111 7 5 5
lowQualScore : . .. . . ... . .... ......... . . . . . . ... . . ... . . . . . . ....................... . . .... ..... ... .. .. . .. ............... . . . . ........ ...... . . .
lowQualScore : 0 99 6 7 777 5 7777 333333333 7 0 7 7 5 5 666 0 2 333 7 7 7 8 9 9 00000000000000000000000 4 9 7777 88888 222 66 66 7 11 000000000000000 0 6 6 7 88888888 555555 0 0 3
consensus : TGTCCCTAATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAA-TTTTCATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TAT-GAGACCCAACAATGTGGTC-T-A-T--T--AAAA-GT-AA------AAAANT-TG--CGTTTTGTGCCAAATTAA---AACTTCAT--TATTAAAACAAAATA-TG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGT-GGTCAGAACAAGAATTGCCGGNCGAAAT-------CCCCGG------CCCTTAGGGACAGCCCT
Reference ( gi|2 ) : TGTTCCTAATTTTGTGAGTA--GAAGATTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGTAAA----CC---------GGA-GATAATCTGTGATGAA-TTTTCATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTACTTGTT---TAT-GACACCCAAAAATGTGATC-T-A-T--C--AAAA-TTAAA------AAAAAT-TG--TGTTTTGTGCCAAATTAATTGAACTTCAT--AATTAAAACAAAATC-TG-TTTTTAACAGTATATCCTCAGCCC---------------ATAGTAGCCAGT-GGTAAGAACAAGAATTGCTGGGTGAAAT-------ACCCGG------CCCTAAGAGACAGCTCT
gi|4 : TGTCCCTTATTTTGTGAGTA--GAAGGTTGAATTTCCGAAGTAAA-AAG---GGTTTTAAGGGGAAAA----CT---------GGA-GACGATCTGTGATGAATTTTTCGTTG-T-TT-TTAA-T-GAAAACTAGACTGCATTATTTGTT---TAT-GAGGCCTAACAATGTGATC-T-G-T--TGGAAAG-T---A------AAAATT-TG--TGTTTTGTGCCAAATTA----AACTTCAT--TATTAGAACAAAATA-TGTTTTTTAATGGTATATCCTAAGCCC---------------TTAGTAGCAGAA-GGTCAGAATGAGAATTACAGGTTGAAAT-------CCTCGG------CTCTTATGGACAGCTCT
gi|5 : cTGTCCCTAATTTTTCGAGTA--GAAAGTTGAATTTCTAAAGTAAA-AGG---GGAATGAAGGGGCAAA----CC---------GGA-GACCATCTGTGATGAA-TTT--ATTG-T-TT-TTAA-T-GAAAAATAGACTGCATTTTTTTTA---TAT-GAGACCCAACATTGTGATC-T-G-TTGT--AAAA-GT---------AAAAAT-TG--TGTTTTGTGTCAAATCA----AACTTCAT--TGTTAAAACAAAATA-TGTTTTTTAACGTTTTATCCTCAGCCC---------------ATAGTAGCCAGT-GCTCAAAACAAGAAGTACCAGTTGAAAT-------CTCCGG------GGCTTAGGGACAGCACT
gi|7 : acTGTCCCTAATTTTGTGAGAA--GAAGATTGAATTTC-AAAGAAAA-AGG---GACTTGAAAAG-CAAA----CC---------AGA-GACAATATGTGATGAA-TTTTTATTG-T-TT-TT-AAT-GAAAAATAGACTGCATAATTTGTT---TAT-AAAAACCAATAATGTGATC-A-ACT--G--AAAA-GTAAA------AAT--T-TG--CGTTTTGCGCCAAATT---T-AACTTCAT--TATTACATCAAAATA-TG-TTTTTAACAGTTAATCTTCAGTCC---------------ATAGTAACCAGT-GGTCAGAACAAGAATTACCGGTTGAAAT--------CCAGG------CGCTTAGCAAAAGCCCT
gi|6 : TGTCATTAATTTTGC-AGGA--GAAGGTTGAATTT-------AAA-AGG---GGTTTGAAGAGGCAAA----CC---------AGA-GATGATCCGTGACGAT-TTTTCATTGGT-TT-TT-AAT-TACAAATAGATTGCATTGTTTGTT---TTC-GAGACCCAACAATGTAGTC-T-ACT--G--AAAA-GTAAA------AAT--T-TG--CAATTTGTGCCAAATTAA----ACTTCAT--TATTAAAACAAAATA-TG-TTTTTAATTTAATATCCTCGGTGG---------------ATAGTAGC-AGTTGGTCAGATCAAGAATTGCCGGGTGAAATCCACG--GCCCGG------CCCTTCTGGACAGTCCTg
gi|11 : gcTGTCCCTAATTTTGTGAGTATAGATGGTTGAGTTTCCAAAGTAAA-AAT---GGTTTGAAGGGGCAAA----CC---------GGA-GACA-TCTGTGATGAA-TTTTCAATG-T-CT-TC-AAT-GAAAA-TAGATTGCATTATTAGTT---TTT-GAGACCCAACAATGTCATC-T-G--------------------------------------TTGTGCCAAATTAA--------------------ACAAAATTATG-TTTT-AATGGTAT--CCTCAGCCC---------------ATAGTAGCCAGT-GGTCAGAACAAGAGTTACCGGTTTAAAT-------CTCCAG------CCCTTAAGTACAACCCTg
gi|12 : cTGTCCCTAATTTTGTAAGTA--GAAGAATGAATTTCCAAAATAAA-AGG---GGTATTAAGGGGCAAA----AT---------GTA-GACGAGCTATGGTGAA-CTTCCATAG-C-TT-TTAA-T-GAAAAATAGACTGCATTATTTGTT---TAT-GAGACCCAACAAT-CAATC-T-A-T--T--GAAA-AGAAA------AGAAAT-TG--TGTTTTGTGCCAAA-TAA---AACTCCAT--TATTCAAACAAAATA-TT-TTTTTAATGGTA
gi|16 : TGTCCCTAATTTTGTGAGTA--AAAAGTTGAATTTCCAAAGTAAA-AGG---GGTCTGAAGGGGCAAA----CT---------GGA-GACAATCTGTGATGAA-TTTTCATTG-TATT-TTAA-T-GAAAAATAGATTGCATGATTTATTTTATAT-GG-ACCCAACAATGTGg
gi|14 : gcTGTCCCTAATTTGGTAAGCA--GAAGGTTGAATTTCCCAAGTAAATGGG---GGGTTGAAGGCACAAA----CC---------GGA-GACGACCAGTGATGAA-TTT-CATTG-A-TT-TT-AAT-GAAAAATAGACTGCATTA-TTGTT---TAT-GAGACTAAACAATGTGATC-T-ATT--C--AAAAGTT---------AAAAAT-TG--CGTTTTg
gi|15 : gcTGTCCCTAACTTTGAGAGTA--GATGGTTGAATTTCt
gi|17 : ggcTATCCCAAATTTTTTAAGTA--GATTGTTGACTTTCCAAAGTAAA-AAG---GATTTGAAGGGGCAAA----CC---------GGA-GATatgaaaaatagactgcattatttgttaaatagagacccaacaatgtaattactgaaaagtaaaaatttactttttgtgcaaaaataaaacttcattattaaaacaaaatatgttttatatg
gi|3 : ggaTAATTTTGTGATTA--GAAGATTTGATTTCCAAAGTTAG-AGG---GGTTTGAAGGGGCAAA----CTA--------GGA-GACGATCGGTGGTGAA-TTTTCAATT-T-TT-TT-A-TTGATAAATAGACTGCATTATTTGTT---TAT-GAGACCCAACCATGTAGTC-T-G-T--TG-AAAA-GT-AA------AAAAAT-TG--CATTTTGTGCCAAATCA----GACTTCAT--TATTAAAACAAAATA-TG-TTTTTAACAGTAGATCCT-AAACC---------------ATAGTAGCCGGT-GATCAGAACAAGTATTGTCAGGCAAAAG-------CCCCGGTTCCCACTCTTGGAGACAGCCCT
gi|1 : ATTTTGTGAGTA--GAAAGTTGAATTTCCAAAATAAA-ACA---GGTTTTAAGGGGCAAA----CC---------GAA-GACGATCTGTAATGAA-TTTTCGTTG-T-TT-TTAA-T-GAAACGTAGACTGCACTATTTGTT---TAT-GAGACCCAATAATGTGGTC-T-A-T--TG-AAAA-AGAAA------AAAAAA-TG--CATCTTGTGCCAAAGTA----AACTTCATTAAATTATAACAAAATA-TA-TTGTTAACGGTATATCCTCAGCCCATAATAAGTACTCAAATAGTAGCCAGT-GGTAAGAACAAAAATTGCTGGCTGATAT-------CCATGG------CCCga
gi|8 : tcctttAATA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAG-TTTTCATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TAT-GAGACTCAACAATGTAGTC-T-A-T--TG-AAAA-GT--A------AAAATT-TG--CATTTTGTGCCAAGTTAACT----TTCAT--TATT---ACAAAATA-TA-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGTCGGT-GGTCAAAACAAGAATTGCCGGACCAAATCCCCATCACCCGG------CCCTTAGctggctcttatggaaagccat
gi|9 : TA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAG-TTTTCATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TAT-GAGACTCAACAATGCAGTC-A-A-T--TG-AAAA-GT--A------AAAATT-TG--CATTTTGTGCCAAGTTAAC----CTTCAT--TATT---ACAAAATA-TG-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGCCGGT-GGTCAGAACAAAAATTGCCAAACAAAATCCCCATCACCCGG------CCCTTAGgaaaaaccttg
gi|10 : aTTCCAAAGTAAA-AGG---GGTTTAAAAGGGCAAA----CC---------AGA-GATAATCTGTGGTGAA-TTTTCATTG-T-TT-TT-T-TAGCAAAATAGACAGCATAATTTGTT---TAT-GAGACCCAACAGTGTAGTC-TAA-T--G--AAAA-GT--A------AAAATT-TG--CATTTTGTGCCAAATTA----AACTTCAT--TATTCAGACA-------G-TT-------G---ATCATCAGCCC---------------ATAGTATTTCGT-GGTCAGAACAAGAATAGCCTTGCGAAAT-------CCCTGG------CCCgaaaaaccttg
gi|13 : gtcccttagattttgtgtgAGTGAG-AGATGCGGTTTGAAGGCGAAAATGTCCCTTGATCAGAGGATGACAAACTGTGGTGAA-TTTCCACAG-T-TT-TT-ACT-GAAAAATAGACTGCACT-TTTATT---TATGGAAACC--AAAAT---ATCTT-T-T--T--AAAA-TTGAAGATAATAAAAATCTGTCTGTTTccccagcccttggggacagccct
gi|18 : gttttctatgtctatcTGGTGAA-TTTTCATTG-T-TTATA-A-T-GATTAATAGACTGCATTA-TTGTgatg
gi|15 : -TT-TC-A-T-GAAAAATAGACTGCATTATTTGTTAAATA--GAGACCCAACAATGTAAT--T-ACT--G--AAAA-GT--A------AAAATT-TA--CTTTTTGTGCAAAAATAA---AACTTCAT--TATTAAAACAAAATA-TG-TTTT
Alignments
lowQualScore : 111111111 1 22 11 11 22222 222222222222222 55555555555555555 111111
lowQualScore : 33 33 2 444 5555 222222222 2 2 2 2 2 2 7 6 4 888 0 8888 33 77 00 2 11 0 33333 2 3 44 4 3 6 0 222222222222222 11 55555555555555555 000000
lowQualScore : .. .. . ... .... ......... . . . . . . . . . ... . .... .. .. .. . .. . ..... . . .. . . . . ............... .. ................. ......
lowQualScore : 99 44 5 444 3333 555555555 5 5 5 5 4 4 1 5 7 888 1 3333 77 77 11 7 11 4 22222 2 1 22 1 1 2 1 777777777777777 22 99999999999999999 555555
consensus : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----AT--TG-AAAAGT-AA-AAAATTTGCGTTTTGTGCCAAATT-A---AAC-TTCATT--ATTAAAACAAAA-TATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
Reference ( family-2339 ) : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----AT--T--AAAAGT-AA-AAAANTTGCGTTTTGTGCCAAATTAA---AAC-TTCATT--ATTAAAACAAAA-TATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
gi|1 : TCCTT--TATTTTGTGAGTA--GAAAGTTGAATTTCCAAAATAAA-ACA---GGTTTTAAGGGGCAAA----CC---------GAA-GACGATCTGTAATGAATTTT-CGTTG-T-TT-TTAA-T-GAAACGTAGACTGCACTATTTGTT---TATGAGACCCAATAATGTGGTCT----AT--TGAAAAAGA-AA-AAAAAATGCATCTTGTGCCAAAGT-A---AAC-TTCATTAAATTATAACAAAA-TATA-TTGTTAACGGTATATCCTCAGCCCATAATAAGTACTCAAATAGTAGCCAGTGGTAAGAACAAAAATTGCTGGCTGATATCCATGGC--C-------CCTGG------CTCTTATGGAAAGCC
gi|10 : GTCCCTTAGATTTTGTG------------TG---TTCCAAAGTAAA-AGG---GGTTTAAAAGGGCAAA----CC---------AGA-GATAATCTGTGGTGAATTTT-CATTG-T-TT-TT-T-TAGCAAAATAGACAGCATAATTTGTT---TATGAGACCCAACAGTGTAGTCTA---AT--G--AAAAGT--A-AAAATTTGCATTTTGTGCCAAATT-A---AAC-TTCATT--ATTCAGACA-------G-TT------G----ATCATCAGCCC---------------ATAGTATTTCGTGGTCAGAACAAGAATAGCCTTGCGAAATCCCTGGCCCC-------CCCAG------CCCTTGGGGACAGCCCTat
gi|11 : TGTCCCT--AATTTTGTGAGTATAGATGGTTGAGTTTCCAAAGTAAA-AAT---GGTTTGAAGGGGCAAA----CC---------GGA-GAC-ATCTGTGATGAATTTT-CAATG-T-CT-TC-AAT-GAAAA-TAGATTGCATTATTAGTT---TTTGAGACCCAACAATGTCATCT----G----------------------------TTGTGCCAAATT---------------------AAACAAAATTATG--TTTTAATGG--TATCCTCAGCCC---------------ATAGTAGCCAGTGGTCAGAACAAGAGTTACCGGTTTAAAT---------C-------TCCAG------CCCTTAAGTACAACCCT
gi|12 : cTGTCCCT--AATTTTGTAAGTA--GAAGAATGAATTTCCAAAATAAA-AGG---GGTATTAAGGGGCAAA----AT---------GTA-GACGAGCTATGGTGAACTTC-CATAG-C-TT-TTAA-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAAT-CAATCT----AT--TG-AAAAGA-AA-AGAAATTGTGTTTTGTGCCAAA-TAA---AAC-TCCATT--ATTCAAACAAAA-TATT-TTTTTAATGGTA
gi|13 : AGTGAG-AGATGCGGTTTGAAGGCGAAAATGTCCCTTGATCAGAGGATGACAAACTGTGGTGAATTTC-CACAG-T-TT-TT-ACT-GAAAAATAGACTGCACT-TTTATT---TATGGAAACCAA-AATATCTTTTTAAAAT--T--GAAGAT-AATAAAAATg
gi|14 : gttttctatgtctatcTGTCCCT--AATTTGGTAAGCA--GAAGGTTGAATTTCCCAAGTAAATGGG---GGGTTGAAGGCACAAA----CC---------GGA-GACGACCAGTGATGAATTT--CATTG-A-TT-TT-AAT-GAAAAATAGACTGCATTA-TTGTT---TATGAGACTAAACAATGTGATCT----AT--TC-AAAAGT-TA-AAAA-TTGCGTTTTctgtctgtttgatg
gi|15 : gcTGTCCCT--AACTTTGAGAGTA--GATGGTTGAATTTCt
gi|15 : ggc-TT-TC-A-T-GAAAAATAGACTGCATTATTTGTTAAATA-GAGACCCAACAATGTAAT-T----AC--TG-AAAAGT-AA-AAA-TTTACTTTTTGTGCAAAAATAA---AAC-TTCATT--ATTAAAACAAAA-TATG-TTTTatgaaaaatagactgcattatttgttaaatagagacccaacaatgtaattactgaaaagtaaaaatttactttttgtgcaaaaataaaacttcattattaaaacaaaatatgttttatatg
gi|16 : ggctgtccctaactttgagagtagatggttgaaTGTCCCT--AATTTTGTGAGTA--AAAAGTTGAATTTCCAAAGTAAA-AGG---GGTCTGAAGGGGCAAA----CT---------GGA-GACAATCTGTGATGAATTTT-CATTG-TATT-TTAA-T-GAAAAATAGATTGCATGATTTATTTTATATG-GACCCAACAATGTGGatatg
gi|17 : gcTATCCCA--AATTTTTTAAGTA--GATTGTTGACTTTCCAAAGTAAA-AAG---GATTTGAAGGGGCAAA----CC---------GGA-GA
gi|18 : ggaTGGTGAATTTT-CATTG-T-TTATA-A-T-GATTAATAGACTGCATTATTt
gi|2 : TGTTCCT--AATTTTGTGAGTA--GAAGATTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGTAAA----CC---------GGA-GATAATCTGTGATGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTACTTGTT---TATGACACCCAAAAATGTGATCT----AT--C--AAAATTAAA-AAAAATTGTGTTTTGTGCCAAATTAATTGAAC-TTCATA--ATTAAAACAAAA-TCTG-TTTTTAACAGTATATCCTCAGCCC---------------ATAGTAGCCAGTGGTAAGAACAAGAATTGCTGGGTGAAAT---------A-------CCCGG------CCCTAAGAGACAGCTCTgt
gi|3 : T--AATTTTGTGATTA--GAAGATTTGATTTCCAAAGTTAG-AGG---GGTTTGAAGGGGCAAA----CTA--------GGA-GACGATCGGTGGTGAATTTT-CAATT-T-TT-TT-A-TTGATAAATAGACTGCATTATTTGTT---TATGAGACCCAACCATGTAGTCT----GT--TG-AAAAGT-AA-AAAAATTGCATTTTGTGCCAAATC-A---GAC-TTCATT--ATTAAAACAAAA-TATG-TTTTTAACAGTAGATCCT-AAACC---------------ATAGTAGCCGGTGATCAGAACAAGTATTGTCAGGCAAAAG---------C-------CCCGGTTCCCACTCTTGGAGACAGCCCT
gi|4 : TGTCCCT--TATTTTGTGAGTA--GAAGGTTGAATTTCCGAAGTAAA-AAG---GGTTTTAAGGGGAAAA----CT---------GGA-GACGATCTGTGATGAATTTTTCGTTG-T-TT-TT-AAT-GAAAACTAGACTGCATTATTTGTT---TATGAGGCCTAACAATGTGATCT----GT--TG-GAAAGT--A-AAAATTTGTGTTTTGTGCCAAATT-A---AAC-TTCATT--ATTAGAACAAAA-TATGTTTTTTAATGGTATATCCTAAGCCC---------------TTAGTAGCAGAAGGTCAGAATGAGAATTACAGGTTGAAAT---------C-------CTCGG------CTCTTATGGACAGCTCTga
gi|5 : cTGTCCCT--AATTTTTCGAGTA--GAAAGTTGAATTTCTAAAGTAAA-AGG---GGAATGAAGGGGCAAA----CC---------GGA-GACCATCTGTGATGAATTT---ATTG-T-TT-TT-AAT-GAAAAATAGACTGCATTTTTTTTA---TATGAGACCCAACATTGTGATCT----GTTGT--AAAAGT-AA-AAA--TTGTGTTTTGTGTCAAATC-A---AAC-TTCATT--GTTAAAACAAAA-TATGTTTTTTAACGTTTTATCCTCAGCCC---------------ATAGTAGCCAGTGCTCAAAACAAGAAGTACCAGTTGAAAT---------C-------TCCGG------GGCTTAGGGACAGCACT
gi|6 : acTGTCATT--AATTTTGC-AGGA--GAAGGTTGAATTT-------AAA-AGG---GGTTTGAAGAGGCAAA----CC---------AGA-GATGATCCGTGACGATTTTT-CATTGGT-TT-TT-AAT-TACAAATAGATTGCATTGTTTGTT---TTCGAGACCCAACAATGTAGTCT----AC--TG-AAAAGT-AA-AAA-TTTGCAATTTGTGCCAAATTAA---A-C-TTCATT--ATTAAAACAAAA-TATG-TTTTTAATTTAATATCCTCGGTGG---------------ATAGTAGCAGTTGGTCAGATCAAGAATTGCCGGGTGAAAT---------CCACGG--CCCGG------CCCTTCTGGACAGTCCT
gi|7 : gcTGTCCCT--AATTTTGTGAGAA--GAAGATTGAATTTC-AAAGAAAA-AGG---GACTTGAAAAG-CAAA----CC---------AGA-GACAATATGTGATGAATTTT-TATTG-T-TT-TT-AAT-GAAAAATAGACTGCATAATTTGTT---TATAAAAACCAATAATGTGATCA----AC--TG-AAAAGT-AA-AAA-TTTGCGTTTTGCGCCAAATTTA---A-C-TTCATT--ATTACATCAAAA-TATG-TTTTTAACAGTTAATCTTCAGTCC---------------ATAGTAACCAGTGGTCAGAACAAGAATTACCGGTTGAAAT-----------------CCAGG------CGCTTAGCAAAAGCCCTg
gi|8 : AATA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGTAGTCT----AT--TG-AAAAGT--A-AAAATTTGCATTTTGTGCCAAGTT-----AACTTTCATT--ATT---ACAAAA-TATA-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGTCGGTGGTCAAAACAAGAATTGCCGGACCAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
gi|9 : TA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGCAGTCA----AT--TG-AAAAGT--A-AAAATTTGCATTTTGTGCCAAGTT-A---ACC-TTCATT--ATT---ACAAAA-TATG-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGCCGGTGGTCAGAACAAAAATTGCCAAACAAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
Alignments
lowQualScore : 111111111 1 1111 222222222222222 55555555555555555 111111
lowQualScore : 33 33 2 444 5555 222222222 2 2 2 2 2 2 7 6 4 888 0 5555 5 7777 4 33 3 6666 44 2 6 0 222222222222222 11 55555555555555555 000000
lowQualScore : .. .. . ... .... ......... . . . . . . . . . ... . .... . .... . .. . .... .. . . . ............... .. ................. ......
lowQualScore : 99 44 5 444 3333 555555555 5 5 5 5 4 4 1 5 7 888 1 7777 3 0000 4 77 1 5555 22 2 2 1 777777777777777 22 99999999999999999 555555
consensus : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
Reference ( family-2339 ) : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
gi|1 : TCCTT--TATTTTGTGAGTA--GAAAGTTGAATTTCCAAAATAAA-ACA---GGTTTTAAGGGGCAAA----CC---------GAA-GACGATCTGTAATGAATTTT-CGTTG-T-TT-TTAA-T-GAAACGTAGACTGCACTATTTGTT---TATGAGACCCAATAATGTGGTCT----ATTGAAAAAGA-A--AAAAAAATG--CATCTTGTGC-CAAAGTA----AACTTCATTAAATTATAACAAAATATA-TTGTTAACGGTATATCCTCAGCCCATAATAAGTACTCAAATAGTAGCCAGTGGTAAGAACAAAAATTGCTGGCTGATATCCATGGC--C-------CCTGG------CTCTTATGGAAAGCC
gi|10 : GTCCCTTAGATTTTGTG------------TG---TTCCAAAGTAAA-AGG---GGTTTAAAAGGGCAAA----CC---------AGA-GATAATCTGTGGTGAATTTT-CATTG-T-TT-TT-T-TAGCAAAATAGACAGCATAATTTGTT---TATGAGACCCAACAGTGTAGTCT----AATG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAATTA----AACTTCATT--ATTCAGACA------G-TT------G----ATCATCAGCCC---------------ATAGTATTTCGTGGTCAGAACAAGAATAGCCTTGCGAAATCCCTGGCCCC-------CCCAG------CCCTTGGGGACAGCCCTat
gi|11 : TGTCCCT--AATTTTGTGAGTATAGATGGTTGAGTTTCCAAAGTAAA-AAT---GGTTTGAAGGGGCAAA----CC---------GGA-GAC-ATCTGTGATGAATTTT-CAATG-T-CT-TC-AAT-GAAAA-TAGATTGCATTATTAGTT---TTTGAGACCCAACAATGTCATCT----G-----------------------------TTGTGC-CAAATTA----AAC-----------AAAAT----TATG--TTTTAATGG--TATCCTCAGCCC---------------ATAGTAGCCAGTGGTCAGAACAAGAGTTACCGGTTTAAAT---------C-------TCCAG------CCCTTAAGTACAACCCT
gi|12 : cTGTCCCT--AATTTTGTAAGTA--GAAGAATGAATTTCCAAAATAAA-AGG---GGTATTAAGGGGCAAA----AT---------GTA-GACGAGCTATGGTGAACTTC-CATAG-C-TT-TTAA-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAAT-CAATCT----ATTG-AAAAGA-A--AAGAAATTG--TGTTTTGTGC-CAAATAA----AACTCCATT--ATTCAAACAAAATATT-TTTTTAATGGTA
gi|13 : AGTGAG-AGATGCGGTTTGAAGGCGAAAATGTCCCTTGATCAGAGGATGACAAACTGTGGTGAATTTC-CACAG-T-TT-TT-ACT-GAAAAATAGACTGCACT-TTTATT---TATGGAAACCAA-AATATCTTTTTAAAATTG-AAGA-T-AATAAAAATCTGTCTGTTTg
gi|14 : gttttctatgtctatcTGTCCCT--AATTTGGTAAGCA--GAAGGTTGAATTTCCCAAGTAAATGGG---GGGTTGAAGGCACAAA----CC---------GGA-GACGACCAGTGATGAATTT--CATTG-A-TT-TT-AAT-GAAAAATAGACTGCATTA-TTGTT---TATGAGACTAAACAATGTGATCT----ATTC-AAAAGT-T--AAAAA-TTG--CGTTTTgatg
gi|15 : gcTGTCCCT--AACTTTGAGAGTA--GATGGTTGAATTTCt
gi|15 : ggc-TT-TC-A-T-GAAAAATAGACTGCATTATTTGTTAAATA-GAGACCCAACAATGTAAT-T----ACTG-AAAAGT----AAAAATTTA--CTTTTTGTGCAAAAATAA----AACTTCATT--ATTAAAACAAAATATG-TTTTatgaaaaatagactgcattatttgttaaatagagacccaacaatgtaattactgaaaagtaaaaatttactttttgtgcaaaaataaaacttcattattaaaacaaaatatgttttatatg
gi|16 : ggctgtccctaactttgagagtagatggttgaaTGTCCCT--AATTTTGTGAGTA--AAAAGTTGAATTTCCAAAGTAAA-AGG---GGTCTGAAGGGGCAAA----CT---------GGA-GACAATCTGTGATGAATTTT-CATTG-TATT-TTAA-T-GAAAAATAGATTGCATGATTTATTTTATATG-GACCCAACAATGTGGatatg
gi|17 : gcTATCCCA--AATTTTTTAAGTA--GATTGTTGACTTTCCAAAGTAAA-AAG---GATTTGAAGGGGCAAA----CC---------GGA-GA
gi|18 : ggaTGGTGAATTTT-CATTG-T-TTATA-A-T-GATTAATAGACTGCATTATTt
gi|2 : TGTTCCT--AATTTTGTGAGTA--GAAGATTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGTAAA----CC---------GGA-GATAATCTGTGATGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTACTTGTT---TATGACACCCAAAAATGTGATCT----ATC--AAAATTAA--AAAAAATTG--TGTTTTGTGC-CAAATTAATTGAACTTCATA--ATTAAAACAAAATCTG-TTTTTAACAGTATATCCTCAGCCC---------------ATAGTAGCCAGTGGTAAGAACAAGAATTGCTGGGTGAAAT---------A-------CCCGG------CCCTAAGAGACAGCTCTgt
gi|3 : T--AATTTTGTGATTA--GAAGATTTGATTTCCAAAGTTAG-AGG---GGTTTGAAGGGGCAAA----CTA--------GGA-GACGATCGGTGGTGAATTTT-CAATT-T-TT-TT-A-TTGATAAATAGACTGCATTATTTGTT---TATGAGACCCAACCATGTAGTCT----GTTG-AAAAGT-A--AAAAAATTG--CATTTTGTGC-CAAATCA----GACTTCATT--ATTAAAACAAAATATG-TTTTTAACAGTAGATCCT-AAACC---------------ATAGTAGCCGGTGATCAGAACAAGTATTGTCAGGCAAAAG---------C-------CCCGGTTCCCACTCTTGGAGACAGCCCT
gi|4 : TGTCCCT--TATTTTGTGAGTA--GAAGGTTGAATTTCCGAAGTAAA-AAG---GGTTTTAAGGGGAAAA----CT---------GGA-GACGATCTGTGATGAATTTTTCGTTG-T-TT-TT-AAT-GAAAACTAGACTGCATTATTTGTT---TATGAGGCCTAACAATGTGATCT----GTTG-GAAAGT----AAAAATTTG--TGTTTTGTGC-CAAATTA----AACTTCATT--ATTAGAACAAAATATGTTTTTTAATGGTATATCCTAAGCCC---------------TTAGTAGCAGAAGGTCAGAATGAGAATTACAGGTTGAAAT---------C-------CTCGG------CTCTTATGGACAGCTCTga
gi|5 : cTGTCCCT--AATTTTTCGAGTA--GAAAGTTGAATTTCTAAAGTAAA-AGG---GGAATGAAGGGGCAAA----CC---------GGA-GACCATCTGTGATGAATTT---ATTG-T-TT-TT-AAT-GAAAAATAGACTGCATTTTTTTTA---TATGAGACCCAACATTGTGATCT----GTTGTAAAAGT-A--AAAA--TTG--TGTTTTGTGT-CAAATCA----AACTTCATT--GTTAAAACAAAATATGTTTTTTAACGTTTTATCCTCAGCCC---------------ATAGTAGCCAGTGCTCAAAACAAGAAGTACCAGTTGAAAT---------C-------TCCGG------GGCTTAGGGACAGCACT
gi|6 : acTGTCATT--AATTTTGC-AGGA--GAAGGTTGAATTT-------AAA-AGG---GGTTTGAAGAGGCAAA----CC---------AGA-GATGATCCGTGACGATTTTT-CATTGGT-TT-TT-AAT-TACAAATAGATTGCATTGTTTGTT---TTCGAGACCCAACAATGTAGTCT----ACTG-AAAAGT-A--AAAA-TTTG--CAATTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAATTTAATATCCTCGGTGG---------------ATAGTAGCAGTTGGTCAGATCAAGAATTGCCGGGTGAAAT---------CCACGG--CCCGG------CCCTTCTGGACAGTCCT
gi|7 : gcTGTCCCT--AATTTTGTGAGAA--GAAGATTGAATTTC-AAAGAAAA-AGG---GACTTGAAAAG-CAAA----CC---------AGA-GACAATATGTGATGAATTTT-TATTG-T-TT-TT-AAT-GAAAAATAGACTGCATAATTTGTT---TATAAAAACCAATAATGTGATCA----ACTG-AAAAGT-A--AAA-ATTTG--CGTTTTGCGC-CAAATTT----AACTTCATT--ATTACATCAAAATATG-TTTTTAACAGTTAATCTTCAGTCC---------------ATAGTAACCAGTGGTCAGAACAAGAATTACCGGTTGAAAT-----------------CCAGG------CGCTTAGCAAAAGCCCTg
gi|8 : AATA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGTAGTCT----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACTTTCATT--ATT---ACAAAATATA-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGTCGGTGGTCAAAACAAGAATTGCCGGACCAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
gi|9 : TA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGCAGTCA----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACCTTCATT--ATT---ACAAAATATG-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGCCGGTGGTCAGAACAAAAATTGCCAAACAAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
Alignments
lowQualScore : 111111111 1 1111 222222222222222 55555555555555555 111111
lowQualScore : 33 33 2 444 5555 222222222 2 2 2 2 2 2 7 6 4 888 0 5555 5 7777 4 33 3 6666 44 2 6 0 222222222222222 11 55555555555555555 000000
lowQualScore : .. .. . ... .... ......... . . . . . . . . . ... . .... . .... . .. . .... .. . . . ............... .. ................. ......
lowQualScore : 99 44 5 444 3333 555555555 5 5 5 5 4 4 1 5 7 888 1 7777 3 0000 4 77 1 5555 22 2 2 1 777777777777777 22 99999999999999999 555555
consensus : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
Reference ( family-2339 ) : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
gi|1 : TCCTT--TATTTTGTGAGTA--GAAAGTTGAATTTCCAAAATAAA-ACA---GGTTTTAAGGGGCAAA----CC---------GAA-GACGATCTGTAATGAATTTT-CGTTG-T-TT-TTAA-T-GAAACGTAGACTGCACTATTTGTT---TATGAGACCCAATAATGTGGTCT----ATTGAAAAAGA-A--AAAAAAATG--CATCTTGTGC-CAAAGTA----AACTTCATTAAATTATAACAAAATATA-TTGTTAACGGTATATCCTCAGCCCATAATAAGTACTCAAATAGTAGCCAGTGGTAAGAACAAAAATTGCTGGCTGATATCCATGGC--C-------CCTGG------CTCTTATGGAAAGCC
gi|10 : GTCCCTTAGATTTTGTG------------TG---TTCCAAAGTAAA-AGG---GGTTTAAAAGGGCAAA----CC---------AGA-GATAATCTGTGGTGAATTTT-CATTG-T-TT-TT-T-TAGCAAAATAGACAGCATAATTTGTT---TATGAGACCCAACAGTGTAGTCT----AATG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAATTA----AACTTCATT--ATTCAGACA------G-TT------G----ATCATCAGCCC---------------ATAGTATTTCGTGGTCAGAACAAGAATAGCCTTGCGAAATCCCTGGCCCC-------CCCAG------CCCTTGGGGACAGCCCTat
gi|11 : TGTCCCT--AATTTTGTGAGTATAGATGGTTGAGTTTCCAAAGTAAA-AAT---GGTTTGAAGGGGCAAA----CC---------GGA-GAC-ATCTGTGATGAATTTT-CAATG-T-CT-TC-AAT-GAAAA-TAGATTGCATTATTAGTT---TTTGAGACCCAACAATGTCATCT----G-----------------------------TTGTGC-CAAATTA----AAC-----------AAAAT----TATG--TTTTAATGG--TATCCTCAGCCC---------------ATAGTAGCCAGTGGTCAGAACAAGAGTTACCGGTTTAAAT---------C-------TCCAG------CCCTTAAGTACAACCCT
gi|12 : cTGTCCCT--AATTTTGTAAGTA--GAAGAATGAATTTCCAAAATAAA-AGG---GGTATTAAGGGGCAAA----AT---------GTA-GACGAGCTATGGTGAACTTC-CATAG-C-TT-TTAA-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAAT-CAATCT----ATTG-AAAAGA-A--AAGAAATTG--TGTTTTGTGC-CAAATAA----AACTCCATT--ATTCAAACAAAATATT-TTTTTAATGGTA
gi|13 : AGTGAG-AGATGCGGTTTGAAGGCGAAAATGTCCCTTGATCAGAGGATGACAAACTGTGGTGAATTTC-CACAG-T-TT-TT-ACT-GAAAAATAGACTGCACT-TTTATT---TATGGAAACCAA-AATATCTTTTTAAAATTG-AAGA-T-AATAAAAATCTGTCTGTTTg
gi|14 : gttttctatgtctatcTGTCCCT--AATTTGGTAAGCA--GAAGGTTGAATTTCCCAAGTAAATGGG---GGGTTGAAGGCACAAA----CC---------GGA-GACGACCAGTGATGAATTT--CATTG-A-TT-TT-AAT-GAAAAATAGACTGCATTA-TTGTT---TATGAGACTAAACAATGTGATCT----ATTC-AAAAGT-T--AAAAA-TTG--CGTTTTgatg
gi|15 : gcTGTCCCT--AACTTTGAGAGTA--GATGGTTGAATTTCt
gi|15 : ggc-TT-TC-A-T-GAAAAATAGACTGCATTATTTGTTAAATA-GAGACCCAACAATGTAAT-T----ACTG-AAAAGT----AAAAATTTA--CTTTTTGTGCAAAAATAA----AACTTCATT--ATTAAAACAAAATATG-TTTTatgaaaaatagactgcattatttgttaaatagagacccaacaatgtaattactgaaaagtaaaaatttactttttgtgcaaaaataaaacttcattattaaaacaaaatatgttttatatg
gi|16 : ggctgtccctaactttgagagtagatggttgaaTGTCCCT--AATTTTGTGAGTA--AAAAGTTGAATTTCCAAAGTAAA-AGG---GGTCTGAAGGGGCAAA----CT---------GGA-GACAATCTGTGATGAATTTT-CATTG-TATT-TTAA-T-GAAAAATAGATTGCATGATTTATTTTATATG-GACCCAACAATGTGGatatg
gi|17 : gcTATCCCA--AATTTTTTAAGTA--GATTGTTGACTTTCCAAAGTAAA-AAG---GATTTGAAGGGGCAAA----CC---------GGA-GA
gi|18 : ggaTGGTGAATTTT-CATTG-T-TTATA-A-T-GATTAATAGACTGCATTATTt
gi|2 : TGTTCCT--AATTTTGTGAGTA--GAAGATTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGTAAA----CC---------GGA-GATAATCTGTGATGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTACTTGTT---TATGACACCCAAAAATGTGATCT----ATC--AAAATTAA--AAAAAATTG--TGTTTTGTGC-CAAATTAATTGAACTTCATA--ATTAAAACAAAATCTG-TTTTTAACAGTATATCCTCAGCCC---------------ATAGTAGCCAGTGGTAAGAACAAGAATTGCTGGGTGAAAT---------A-------CCCGG------CCCTAAGAGACAGCTCTgt
gi|3 : T--AATTTTGTGATTA--GAAGATTTGATTTCCAAAGTTAG-AGG---GGTTTGAAGGGGCAAA----CTA--------GGA-GACGATCGGTGGTGAATTTT-CAATT-T-TT-TT-A-TTGATAAATAGACTGCATTATTTGTT---TATGAGACCCAACCATGTAGTCT----GTTG-AAAAGT-A--AAAAAATTG--CATTTTGTGC-CAAATCA----GACTTCATT--ATTAAAACAAAATATG-TTTTTAACAGTAGATCCT-AAACC---------------ATAGTAGCCGGTGATCAGAACAAGTATTGTCAGGCAAAAG---------C-------CCCGGTTCCCACTCTTGGAGACAGCCCT
gi|4 : TGTCCCT--TATTTTGTGAGTA--GAAGGTTGAATTTCCGAAGTAAA-AAG---GGTTTTAAGGGGAAAA----CT---------GGA-GACGATCTGTGATGAATTTTTCGTTG-T-TT-TT-AAT-GAAAACTAGACTGCATTATTTGTT---TATGAGGCCTAACAATGTGATCT----GTTG-GAAAGT----AAAAATTTG--TGTTTTGTGC-CAAATTA----AACTTCATT--ATTAGAACAAAATATGTTTTTTAATGGTATATCCTAAGCCC---------------TTAGTAGCAGAAGGTCAGAATGAGAATTACAGGTTGAAAT---------C-------CTCGG------CTCTTATGGACAGCTCTga
gi|5 : cTGTCCCT--AATTTTTCGAGTA--GAAAGTTGAATTTCTAAAGTAAA-AGG---GGAATGAAGGGGCAAA----CC---------GGA-GACCATCTGTGATGAATTT---ATTG-T-TT-TT-AAT-GAAAAATAGACTGCATTTTTTTTA---TATGAGACCCAACATTGTGATCT----GTTGTAAAAGT-A--AAAA--TTG--TGTTTTGTGT-CAAATCA----AACTTCATT--GTTAAAACAAAATATGTTTTTTAACGTTTTATCCTCAGCCC---------------ATAGTAGCCAGTGCTCAAAACAAGAAGTACCAGTTGAAAT---------C-------TCCGG------GGCTTAGGGACAGCACT
gi|6 : acTGTCATT--AATTTTGC-AGGA--GAAGGTTGAATTT-------AAA-AGG---GGTTTGAAGAGGCAAA----CC---------AGA-GATGATCCGTGACGATTTTT-CATTGGT-TT-TT-AAT-TACAAATAGATTGCATTGTTTGTT---TTCGAGACCCAACAATGTAGTCT----ACTG-AAAAGT-A--AAAA-TTTG--CAATTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAATTTAATATCCTCGGTGG---------------ATAGTAGCAGTTGGTCAGATCAAGAATTGCCGGGTGAAAT---------CCACGG--CCCGG------CCCTTCTGGACAGTCCT
gi|7 : gcTGTCCCT--AATTTTGTGAGAA--GAAGATTGAATTTC-AAAGAAAA-AGG---GACTTGAAAAG-CAAA----CC---------AGA-GACAATATGTGATGAATTTT-TATTG-T-TT-TT-AAT-GAAAAATAGACTGCATAATTTGTT---TATAAAAACCAATAATGTGATCA----ACTG-AAAAGT-A--AAA-ATTTG--CGTTTTGCGC-CAAATTT----AACTTCATT--ATTACATCAAAATATG-TTTTTAACAGTTAATCTTCAGTCC---------------ATAGTAACCAGTGGTCAGAACAAGAATTACCGGTTGAAAT-----------------CCAGG------CGCTTAGCAAAAGCCCTg
gi|8 : AATA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGTAGTCT----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACTTTCATT--ATT---ACAAAATATA-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGTCGGTGGTCAAAACAAGAATTGCCGGACCAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
gi|9 : TA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGCAGTCA----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACCTTCATT--ATT---ACAAAATATG-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGCCGGTGGTCAGAACAAAAATTGCCAAACAAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
blockSeqs : TA TA T TGC TGTC TTGATCAGA T A T G A A A A A AAA TAAA T AAT T TC A ATTG . C T . GC CCCTGGCCCC TTCCCA
blockSeqs : . . . . . A . G . . . . A C T TTA . . AA A . . . . A T . TT CCCCATCA .
blockSeqs : . . . . . . . A . . . . . A . . . . A T . . . . C . . GT CCCCATCA .
blockSeqs : . . . . . . . G . . . . . A . . . . T T . . . . A . . GC CCACGG .
blockSeqs : . . . . . . . A . . . . . A . . . . A A . . . . A . . TT C .
blockSeqs : . . . . . . . A . . . . . A . . . . A A . . . . A . . TT A .
blockSeqs : . . . . . . . G . . . . . A . . . . A T . . . . A . . GT C .
blockSeqs : . . . . . . . G . . . . . . . . . . A T . . . . A . . TT C .
blockSeqs : . . . . . . . C . . . . . . . . . . . T . . . . A . . AC C .
blockSeqs : . . . . . . . G . . . . . . . . . . . T . . . . A . . AC . .
blockSeqs : . . . . . . . A . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** *************** C****************
originalCons : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
finalCons : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAATC----------------CCCGG------CCCTTAGGGACAGCCCT
Alignments
lowQualScore : 111111111 1 1111 222222222222222 55555555555555555 111111
lowQualScore : 33 33 2 444 5555 222222222 2 2 2 2 2 2 7 6 4 888 0 5555 5 7777 4 33 3 6666 44 2 6 0 222222222222222 11 55555555555555555 000000
lowQualScore : .. .. . ... .... ......... . . . . . . . . . ... . .... . .... . .. . .... .. . . . ............... .. ................. ......
lowQualScore : 99 44 5 444 3333 555555555 5 5 5 5 4 4 1 5 7 888 1 7777 3 0000 4 77 1 5555 22 2 2 1 777777777777777 22 99999999999999999 555555
consensus : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
Reference ( family-2339 ) : TGTCCCT--AATTTTGTGAGTA--GAAGGTTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGCAAA----CC---------GGA-GACGATCTGTGGTGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAATGTGGTCT----ATTG-AAAAGT-A--AAAAATTTG--CGTTTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAACGGTATATCCTCAGCCC---------------ATAGTAGCCGGTGGTCAGAACAAGAATTGCCGGNCGAAAT---------C-------CCCGG------CCCTTAGGGACAGCCCT
gi|1 : TCCTT--TATTTTGTGAGTA--GAAAGTTGAATTTCCAAAATAAA-ACA---GGTTTTAAGGGGCAAA----CC---------GAA-GACGATCTGTAATGAATTTT-CGTTG-T-TT-TTAA-T-GAAACGTAGACTGCACTATTTGTT---TATGAGACCCAATAATGTGGTCT----ATTGAAAAAGA-A--AAAAAAATG--CATCTTGTGC-CAAAGTA----AACTTCATTAAATTATAACAAAATATA-TTGTTAACGGTATATCCTCAGCCCATAATAAGTACTCAAATAGTAGCCAGTGGTAAGAACAAAAATTGCTGGCTGATATCCATGGC--C-------CCTGG------CTCTTATGGAAAGCC
gi|10 : GTCCCTTAGATTTTGTG------------TG---TTCCAAAGTAAA-AGG---GGTTTAAAAGGGCAAA----CC---------AGA-GATAATCTGTGGTGAATTTT-CATTG-T-TT-TT-T-TAGCAAAATAGACAGCATAATTTGTT---TATGAGACCCAACAGTGTAGTCT----AATG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAATTA----AACTTCATT--ATTCAGACA------G-TT------G----ATCATCAGCCC---------------ATAGTATTTCGTGGTCAGAACAAGAATAGCCTTGCGAAATCCCTGGCCCC-------CCCAG------CCCTTGGGGACAGCCCTat
gi|11 : TGTCCCT--AATTTTGTGAGTATAGATGGTTGAGTTTCCAAAGTAAA-AAT---GGTTTGAAGGGGCAAA----CC---------GGA-GAC-ATCTGTGATGAATTTT-CAATG-T-CT-TC-AAT-GAAAA-TAGATTGCATTATTAGTT---TTTGAGACCCAACAATGTCATCT----G-----------------------------TTGTGC-CAAATTA----AAC-----------AAAAT----TATG--TTTTAATGG--TATCCTCAGCCC---------------ATAGTAGCCAGTGGTCAGAACAAGAGTTACCGGTTTAAAT---------C-------TCCAG------CCCTTAAGTACAACCCT
gi|12 : cTGTCCCT--AATTTTGTAAGTA--GAAGAATGAATTTCCAAAATAAA-AGG---GGTATTAAGGGGCAAA----AT---------GTA-GACGAGCTATGGTGAACTTC-CATAG-C-TT-TTAA-T-GAAAAATAGACTGCATTATTTGTT---TATGAGACCCAACAAT-CAATCT----ATTG-AAAAGA-A--AAGAAATTG--TGTTTTGTGC-CAAATAA----AACTCCATT--ATTCAAACAAAATATT-TTTTTAATGGTA
gi|13 : AGTGAG-AGATGCGGTTTGAAGGCGAAAATGTCCCTTGATCAGAGGATGACAAACTGTGGTGAATTTC-CACAG-T-TT-TT-ACT-GAAAAATAGACTGCACT-TTTATT---TATGGAAACCAA-AATATCTTTTTAAAATTG-AAGA-T-AATAAAAATCTGTCTGTTTg
gi|14 : gttttctatgtctatcTGTCCCT--AATTTGGTAAGCA--GAAGGTTGAATTTCCCAAGTAAATGGG---GGGTTGAAGGCACAAA----CC---------GGA-GACGACCAGTGATGAATTT--CATTG-A-TT-TT-AAT-GAAAAATAGACTGCATTA-TTGTT---TATGAGACTAAACAATGTGATCT----ATTC-AAAAGT-T--AAAAA-TTG--CGTTTTgatg
gi|15 : gcTGTCCCT--AACTTTGAGAGTA--GATGGTTGAATTTCt
gi|15 : ggc-TT-TC-A-T-GAAAAATAGACTGCATTATTTGTTAAATA-GAGACCCAACAATGTAAT-T----ACTG-AAAAGT----AAAAATTTA--CTTTTTGTGCAAAAATAA----AACTTCATT--ATTAAAACAAAATATG-TTTTatgaaaaatagactgcattatttgttaaatagagacccaacaatgtaattactgaaaagtaaaaatttactttttgtgcaaaaataaaacttcattattaaaacaaaatatgttttatatg
gi|16 : ggctgtccctaactttgagagtagatggttgaaTGTCCCT--AATTTTGTGAGTA--AAAAGTTGAATTTCCAAAGTAAA-AGG---GGTCTGAAGGGGCAAA----CT---------GGA-GACAATCTGTGATGAATTTT-CATTG-TATT-TTAA-T-GAAAAATAGATTGCATGATTTATTTTATATG-GACCCAACAATGTGGatatg
gi|17 : gcTATCCCA--AATTTTTTAAGTA--GATTGTTGACTTTCCAAAGTAAA-AAG---GATTTGAAGGGGCAAA----CC---------GGA-GA
gi|18 : ggaTGGTGAATTTT-CATTG-T-TTATA-A-T-GATTAATAGACTGCATTATTt
gi|2 : TGTTCCT--AATTTTGTGAGTA--GAAGATTGAATTTCCAAAGTAAA-AGG---GGTTTGAAGGGGTAAA----CC---------GGA-GATAATCTGTGATGAATTTT-CATTG-T-TT-TT-A-T-GAAAAATAGACTGCATTACTTGTT---TATGACACCCAAAAATGTGATCT----ATC--AAAATTAA--AAAAAATTG--TGTTTTGTGC-CAAATTAATTGAACTTCATA--ATTAAAACAAAATCTG-TTTTTAACAGTATATCCTCAGCCC---------------ATAGTAGCCAGTGGTAAGAACAAGAATTGCTGGGTGAAAT---------A-------CCCGG------CCCTAAGAGACAGCTCTgt
gi|3 : T--AATTTTGTGATTA--GAAGATTTGATTTCCAAAGTTAG-AGG---GGTTTGAAGGGGCAAA----CTA--------GGA-GACGATCGGTGGTGAATTTT-CAATT-T-TT-TT-A-TTGATAAATAGACTGCATTATTTGTT---TATGAGACCCAACCATGTAGTCT----GTTG-AAAAGT-A--AAAAAATTG--CATTTTGTGC-CAAATCA----GACTTCATT--ATTAAAACAAAATATG-TTTTTAACAGTAGATCCT-AAACC---------------ATAGTAGCCGGTGATCAGAACAAGTATTGTCAGGCAAAAG---------C-------CCCGGTTCCCACTCTTGGAGACAGCCCT
gi|4 : TGTCCCT--TATTTTGTGAGTA--GAAGGTTGAATTTCCGAAGTAAA-AAG---GGTTTTAAGGGGAAAA----CT---------GGA-GACGATCTGTGATGAATTTTTCGTTG-T-TT-TT-AAT-GAAAACTAGACTGCATTATTTGTT---TATGAGGCCTAACAATGTGATCT----GTTG-GAAAGT----AAAAATTTG--TGTTTTGTGC-CAAATTA----AACTTCATT--ATTAGAACAAAATATGTTTTTTAATGGTATATCCTAAGCCC---------------TTAGTAGCAGAAGGTCAGAATGAGAATTACAGGTTGAAAT---------C-------CTCGG------CTCTTATGGACAGCTCTga
gi|5 : cTGTCCCT--AATTTTTCGAGTA--GAAAGTTGAATTTCTAAAGTAAA-AGG---GGAATGAAGGGGCAAA----CC---------GGA-GACCATCTGTGATGAATTT---ATTG-T-TT-TT-AAT-GAAAAATAGACTGCATTTTTTTTA---TATGAGACCCAACATTGTGATCT----GTTGTAAAAGT-A--AAAA--TTG--TGTTTTGTGT-CAAATCA----AACTTCATT--GTTAAAACAAAATATGTTTTTTAACGTTTTATCCTCAGCCC---------------ATAGTAGCCAGTGCTCAAAACAAGAAGTACCAGTTGAAAT---------C-------TCCGG------GGCTTAGGGACAGCACT
gi|6 : acTGTCATT--AATTTTGC-AGGA--GAAGGTTGAATTT-------AAA-AGG---GGTTTGAAGAGGCAAA----CC---------AGA-GATGATCCGTGACGATTTTT-CATTGGT-TT-TT-AAT-TACAAATAGATTGCATTGTTTGTT---TTCGAGACCCAACAATGTAGTCT----ACTG-AAAAGT-A--AAAA-TTTG--CAATTTGTGC-CAAATTA----AACTTCATT--ATTAAAACAAAATATG-TTTTTAATTTAATATCCTCGGTGG---------------ATAGTAGCAGTTGGTCAGATCAAGAATTGCCGGGTGAAAT---------CCACGG--CCCGG------CCCTTCTGGACAGTCCT
gi|7 : gcTGTCCCT--AATTTTGTGAGAA--GAAGATTGAATTTC-AAAGAAAA-AGG---GACTTGAAAAG-CAAA----CC---------AGA-GACAATATGTGATGAATTTT-TATTG-T-TT-TT-AAT-GAAAAATAGACTGCATAATTTGTT---TATAAAAACCAATAATGTGATCA----ACTG-AAAAGT-A--AAA-ATTTG--CGTTTTGCGC-CAAATTT----AACTTCATT--ATTACATCAAAATATG-TTTTTAACAGTTAATCTTCAGTCC---------------ATAGTAACCAGTGGTCAGAACAAGAATTACCGGTTGAAAT-----------------CCAGG------CGCTTAGCAAAAGCCCTg
gi|8 : AATA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGTAGTCT----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACTTTCATT--ATT---ACAAAATATA-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGTCGGTGGTCAAAACAAGAATTGCCGGACCAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg
gi|9 : TA--GAAGATTGAATTTACAAAGTAAA-AGG---GGGTTGAAGGGGTAAA----CC---------AGA-GACAGTCTGTGGTGAGTTTT-CATTG-T-TT-TA-A-T-GAAAAACAGACTGCATTATTTGTT---TATGAGACTCAACAATGCAGTCA----ATTG-AAAAGT----AAAAATTTG--CATTTTGTGC-CAAGTTA----ACCTTCATT--ATT---ACAAAATATG-TTCTTAATGGTATATTCTCAGCTT---------------ATAGTAGCCGGTGGTCAGAACAAAAATTGCCAAACAAAAT---------CCCCATCACCCGG------CCCTTAGGAAAAACCTTg