lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 2222222222222222222222222222222 1 111 222222 333333333333333333333333333333 1111 222222222222222222222222222222222222222222222222222222222222222222222222 11 22 1111 11111111111 3333333333333333333333333333333333333333333
lowQualScore : 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111 22 22 2 2 6 7777777777777777777777777777777 44 00 3 0 3 99 99 111 0 666666 2 9 4 777 999999999999999999999999999999 0000 333333333333333333333333333333333333333333333333333333333333333333333333 11 0 3 66 3 5555 88888888888 4 8888888888888888888888888888888888888888888 4 6
lowQualScore : . ...................................................................................... ....... .. .. . . . ............................... .. .. . . . .. .. ... . ...... . . . ... .............................. .... ........................................................................ .. . . .. . .... ........... . ........................................... . .
lowQualScore : 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222 99 66 5 4 6 0000000000000000000000000000000 66 66 3 0 1 00 66 000 8 999999 0 4 0 000 999999999999999999999999999999 6666 111111111111111111111111111111111111111111111111111111111111111111111111 00 6 0 22 2 6666 22222222222 4 5555555555555555555555555555555555555555555 3 0
consensus : NNNTCTGTGATTAT----ACGCTNTACTCATTTTGATGTNAACCTTATTAANTGGAGNANCACCAGNNAGCTTTT----GTT-G-AA-ACAT--A---TAN------ATA--CTGAACGGAACAGCTAACCCGCCAC--CTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA-T-T-TC-GTCAAAA-AGTA---TCAAAGCAA--AATTTCCTTGAAATT-TG---GACTTGAATAAGAA---------AG-----AAC--ATTTC----GGCTA----TGTA----AAAT-CATT---TAA---T---TGTC----T-GTNA--ATG-T-----C------A--T--------TTTA--ATAGCGCTAC-CCATA----TTTTG-----ACG---AAGATA-TA-----T---G---AA--------TATACAA----AA------GTGGCGGGTTAGCTGTTCCGTTCAGTATATA
Reference ( gi|2 ) : ATATCTTTGATTTTTTCCACCCTAT---CATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG-AA-ACA---A---TAA------ATA--CTGAACGGAACAGCTAACCCGCCAC--CTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA-T-T-TT-GTCAAAA-AGTA---TCAAAGCAA--AATTTCCTTGAAAGT-TG---GACTTGAATAAGAA---------AG-----GAC--ATTTC----GGCTA----TGTA----AAAC-TATT---TCA---T---TGCC----T-GTAA--ATG-T-----C------A--C--------TTTA--ATGGCGTTATGCCATA----TTTTG-----AAG---AAGATA-T------T---G---AA--------TATACAA----AA------GTGGCGGGTTAGCTGCTCCGTTCAGTATGTA
gi|1 : TCTGTGATTAT-----CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGTTGGTAA-ACA---AACTTAAGTTCATATA--CTTAACGTGACAGCTACTCTGCTAC--CTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC-T-T-TTTATCAAAA-ATCA---TCTGGACAA----TTCCCTTGAAATT-TA---GACTTCGACACGAA---------AT-----AAC--A---C----AGCCA----TATG----AAAT-CAATCAATAA---T---TGTC----T-ATTT--ATG-T-----CGTATACA--C--------TTTTTTATGACGCTAC----TA----TTTTA-----ACG---AAGATA-TA-----T---G---AA---------ATACAA----AA------ATGGCGGGTTAGCTGTTCCGTTCAGTAT
gi|10 : tatATCCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATTC---A-ACATGCA---TAT------ATA--CTGAACGGAACAGCTAACCCGCAAC--a
gi|16 : TTT----G---G-AATACATC-A---TAA------ATATACTGAACGGAACAGGTTATCCGCCAT--CT--CATATTTATG-----------T------------Agtta
gi|9 : ---TAT------ATA--CTGAACGGAACAGCTAACCCGTCACATTTGAC
gi|5 : atcaagtctatattatcaaatttgacggttactgatattgggatatttttatatttattgaatgggtaataaattcatttttcacacgata------ATA--CCGAACGGCACAGCTAACCCGCCAC--CAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA-T-T-TT-CTCAAAA-AGTA---TCAAAGC----AATATCTTTGAAATT-TG---GACTTCAATAAGAA---------AG-----ATC--ATTTC----GGGTA----TGTA----AAA--TACA---TAA---T---TGTC----TGGTAA--TTG-TATATAC------AACT--------TTTA--AGAGAGCTTCACTATA----TTTTG-----ACG---AAAATA-T------TCGGG---AA---------ATACAA----AC------GTGGCGGGTTAGCTGTTCCGTTCAGT
gi|3 : ------ATA--CTGAACGAAACAGCTAACCCGCCAC--CTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA-T-T-TT-CTCAAAA-AGTA---TCGAATC----AGTTTCCTTGAAATT-TG---AACTTGAATAAGAACTATCCTTTAG-----GAC--AACACA---GACCAAGTTTGT-------AT-TGTT---TAAT--T---TGGC----A-ATAATTATGATAAA--CAA----A--T--------GTTA--ATAGCGCTACTCAACA----TTGCG-----ACA---AAGATA-T------T---G---GA--------AATACAA----AA------GTGGCGGGTTAGCTGCTCCATT-AGTATtta
gi|3 : tgtatcaaataaaaccggatgat------ATA--CT-AATGGAGCAGCTAACCCGCCAC--TTaca
gi|1 : tgtatcaaataaaaccggatgatatactgaacgaaacagctaacccgccacctgacattttatgtttctaacccgccacctaacattttatgtattttctcaaaaagtatcgaatcagtttccttgaaatttgaacttgaataagaactatcctttaggacaacacagaccaagtttgtattgtttaatttggcaataattatgataaacaaatgttaatagcgctactcaacattgcgacaaagatattggaaatacaa------ATA--CTGAACGGAACAGCTAACCCGC---------CAT-TTT-TG-----------T-------------------ATT--TCATATA-TCT-TC-GTTAAAATAGTAGCGTCA---TAA--A---------AAAGTGTATACGACATAAAT-AGAC---------AATTATTGATTGATTTCATATGGCTG----TGT----------TATT---TCG-------TGTCGAAGT-CTAA--AT---------------------------TTCA--AGGGAATTGT-CCAGATGATTTTTGATAAAAAGACAAAAATG-T------C---A---GG--------TACATAA----AATGTGAGGTAGCAGAGTAGCTGTCACGTTAAGTATAaca
gi|7 : tattctgtgattatcgctttcattttgataaaatcactggagaaacaccagaaagctttttacagttggtaaacaaacttaagttc------ATA--CTTAACGGAAAAGCTAACCTGCCAT--CTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA-T-T-TT-CTCTAAA-AGTA---TCAAAGT----AATTTCCTTGAAATT-TG---GACTTGGATAAGAA---------AG-----AAG--AGT-------GCTA----TGTA----AACT-CAAT---ACAGATT---TGTC----T-GTTT--ATG-T-----C------a
gi|4 : at------ATA--CTGTACAGAACAGCTAACCCGCCAC--CTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA-T-T-TC--TCAAAA-AAAAT--TTAAAGCAATTTATTTCTTTGAAATT-TG---TATCGGAATAATAA---------CG-----AAC--ATTTA----GACTA----TGTACAATAAATACATTC--TCA---TACGTGTC----T-GTTA--TTG-T-----C------G--T--------TTgtataacaatttt
gi|6 : tcactggagaccacaaatatatattgacaaaattggatgtgtttt------ATA--CAAAACGGAACAGCTATTCCGCC----------T-TTT-TT-----------T------------------CATT--TCAAATA-TCT-TC-GTCAAAA-acaaacttttacatcgctaccctatagttta
gi|8 : ttctcaaaaggtatcaaaacaatatacttgaaatttggacttggataagaaataacttttaggctatataaaaaatcataactgtctgttaatgtcatataccaatttcaatagctctaccccata------ATA--CTGAACGGAACAGCTAACCCGC---------CAT-TTT-TG-----------T-------------------ATT--TCATATA-TCT-TC-GTTAAAATAGTA---a
gi|21 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgattgt------ATA--CTGAAATGAACAGCTAACTGGCCAT--CTGGCAT-TTTGTG-----------T------------
gi|20 : ------ATA--CTGAAATGAACAGCTAACTGGCCAT--CTGGCAT-TTTGTG-----------T------------
gi|19 : ------ATA--CTGAACGGAACAGCTAACCCGCCGC--C
gi|11 : cgtatcaaattaaaaat------ATA--CTCAACAGAAGATCTAAC----------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAAT-TGTT-TTCAAAA--GCA---TCAAAGC----AATTTCTTTAAAATT-TG---AA
gi|14 : tTG--CTGAACGGAACAACTAACCCGCCAC--CTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG-T-T-TT-
gi|5 : A--CTGAACGGAACAGCTAACCCGCCAC--GT----T-TGTATT-----------T-------------CCCGA--------ATAT--T-T-TC-GTCAAAA---TA---T---AGTGA--AGCTCTCTTAAAAGT-TG---
gi|18 : ataccgaacggcacagctaacccgccaccagacattttgtttacctgacatttcatgtattttctcaaaaagtatcaaagcaatatctttgaaatttggacttcaataagaaagatcatttcgggtatgtaaaatacataattgtctggtaattgtatataA--CTGAACGGAACAGCTAACCTGCAAC--TTGACAT-TTTCTG-----------T------------Atta
gi|17 : taTGAACGGAGCAGCTAACCCGTCAC--CGGACAT-GTTA--------------------------AACAGATATCCACTGTATA-T-T-TT-GTtttc
gi|22 : CTAACCCACCAC--TTGACAT-TTTATG-----------T------------A
gi|6 : cattttatgtat-TT-CTCAAAA-GGTA---TCAAAACAA--TAT--ACTTGAAATT-TG---GACTTGGATAAGAA---------AT-----AAC--TTTTA----GGCTA----TATA----AAAA--ATCA--TAA---C---TGTC----T-GTTA--ATG-T-----C------A--TATACCAATTTCA--ATAGCTCTACCCCATA----TTTTG-----ACG---AAGATATT------T---G---AA---------ATGAAA----AA------AAGGCGGAATAGCTGTTCCGTTTTGTAT
gi|23 : -TG---TACTGGAATAAGAA---------AG-----GAT--ACTTA----GGTTA----a
gi|7 : ATAC---TTTTA-----GAG---AAAATA-CATAAAAT---GCCAAG--------TACATAA----AATGTCAGATGGCAGGTTAGCTTTTCCGTTAAGTATAacaa
gi|8 : TA----TTTTA-----ACG---AAGATA-TA-----T---G---AA---------ATACAA----AA------ATGGCGGGTTAGCTGTTCCGTTCAGTATcaaagtaatttccttgaaatttggacttggataagaaagaagagtgctatgtaaactcaatacagatttgtctgtttatgtcgtataacaatttt
gi|5 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgattgt----TTTTG-----A-G---AAAATA-CA-----T---G---AAATGTCAGGTAAACAA----AATGTCTGGTGGCGGGTTAGCTGTGCCGTTCGGTATgta
gi|4 : ACA-T------T---A---AA--------TGT-CAG------------GTGGCGGGTTAGCTGTTCTGTACAGTATagtatcaaagcaatatctttgaaatttggacttcaataagaaagatcatttcgggtatgtaaaatacataattgtctggtaattgtatatacaacttttaagagagcttcactatattttgacgaaaatattcgggaaatacaaacgtggcgggttagctgttccgttcagttta
gi|16 : tcactggagaccacaaatatatattgacaaaattggatgtgtttt------T---A---AA--------TATG-------AG------ATGGCGGATAACCTGTTCCGTTCAGTATAactgacattttatgtatttctcaaaaaaaatttaaagcaatttatttctttgaaatttgtatcggaataataacgaacatttagactatgtacaataaatacattctcatacgtgtctgttattgtcgtttacaaacttttacatcgctaccctatagttta
gi|3 : tttggaatacatcataa---AA--------CATAAAATGTCAG------GTGGCGGGTTAGCTGTTTCGTTCAGTATAtgta
gi|21 : tgtatcaaataaaaccggatgACACAA----AATGCCAGATGGCCAGTTAGCTGTTCATTTCAGTATtctaacccgccacctaacattttatgtattttctcaaaaagtatcgaatcagtttccttgaaatttgaacttgaataagaactatcctttaggacaacacagaccaagtttgtattgtttaatttggcaataattatgataaacaaatgttaatagcgctactcaacattgcgacaaagatattggaaatacaaaagtggcgggttagctgctccattagtataca
gi|20 : ACACAA----AATGCCAGATGGCCAGTTAGCTGTTCATTTCAGTAT
gi|9 : CAA----AT------GTGACGGGTTAGCTGTTCCGTTCAGTATATA
gi|10 : atcaagtctatattatcaaatttgacggttactgatattgggatatttttatatttattgaatgggtaataaattcatttttcacacgatagtA----AC------GTTGCGGGTTAGCTGTTCCGTTCAGTATATA
gi|14 : atcctatactcattttaatgtcaactttattaaatgaagcattcaatttatattcaacatgca----AG------GTGGCGGGTTAGTTGTTCCGTTCAGCAa
gi|18 : ----AA------GTTGCAGGTTAGCTGTTCCGTTCAGTgatatttttgggttttatttttacctgacatttttgggtttt
gi|17 : ta------GTGACGGGTTAGCTGCTCCGTTCAgacattttctgtatttc
gi|19 : ------GCGGCGGGTTAGCTGTTCCGTTCAGTATAcggacatgttaaacagatatccactgtatattttgt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Alignments
lowQualScore : 555 22 11 888888888888888888888888888888888888888888888888888888888888 222222222222222222222222 11 3333 222222222 11111 1111 2222222 1 33333 111 88888888888888888888888 2222 222 2
lowQualScore : 2 4 555 1 22 3 33 777777777777777777777777777777777777777777777777777777777777 1 2 000000000000000000000000 0 66 9999 66 55 77 5 4444 0 222222222 33333 2222 0000000 1 66666 5 000 1 8888 5 77777777777777777777777 6 4444 333 8
lowQualScore : . . ... . .. . .. ............................................................ . . ........................ . .. .... .. .. .. . .... . ......... ..... .... ....... . ..... . ... . .... . ....................... . .... ... .
lowQualScore : 5 0 000 0 33 7 33 777777777777777777777777777777777777777777777777777777777777 0 9 999999999999999999999999 1 11 4444 99 11 44 0 5555 4 999999999 33333 1111 1111111 4 00000 7 000 0 3333 7 44444444444444444444444 7 5555 333 0
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--T----TA--TGTA-TTTT-TCAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAATTTGGACTTGGATAAGAA---------AGAACATTTC-GGCTA----TGT--A----AAAT-CATT---TAA-T---TGTCTGTTA--A-TG-T-----C--------G--------TTTTAATAGCGCTA-C-CC-ATATTTTGACGAAGATAT---TGAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATATA
Reference ( family-2294 ) : NNNTCTGTGATTAT--ACGCTNTACTCATTTTGATGTNAACCTTATTAANTGGAGNANCACCAGNNAGCTTTT----GT-TG--AAACA----T--A----TANATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--T----TA--TGTA-TTTCGTCAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAATTTGGACTTGAATAAGAA---------AGAACATTTC-GGCTA----TGT--A----AAAT-CATT---TAA-T---TGTCTGTNA--A-TG-T-----C--------A--------TTTTAATAGCGCTA-C-CC-ATATTTTGACGAAGATAT--ATGAATATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATATA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGT-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--T----T---TGTCTTTTTATCAAAAATCA-TCTGGAC----AATTCCCTTGAAATTTAGACTTCGACACGAA---------ATAACA---C-AGCCA----TAT--G----AAAT-CAATCAATAA-T---TGTCTATTT--A-TG-T-----C--------GTATACACTTTTTTATGACGCTA-C-----TATTTTAACGAAGATAT--ATGAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----AT-TC--AA-CA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGT--TTTC----AAAAGCA-TCAAAGC----AATTTCTTTAAAATTTGAAgtta
gi|14 : tTGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--T----T
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------Atgggtttt
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCAC----TG--TATA-TTTTGT
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------A
gi|19 : taGCGGCGGGTTAGCTGTTCCGTTCAGTATATtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--T----TA--TGTA-TTTTGTCAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAAGTTGGACTTGAATAAGAA---------AGGACATTTC-GGCTA----TGT--A----AAAC-TATT---TCA-T---TGCCTGTAA--A-TG-T-----C--------A--------CTTTAATGGCGTTA-TGCC-ATATTTTGAAGAAGATAT---TGAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTATGTAc
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--T----TA--TGTA-TTTTCTCAAAAAGTA-TCGAATC----AGTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACAACACAGACCAAGTTTGT---------AT-TGTT---TAATT---TGGCAATAATTA-TGATAAA--CAA------A--------TGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATAT---TGGAAATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--T----TA--TGTA-TTTC-TCAAAAAAAATTTAAAGCAATTTATTTCTTTGAAATTTGTATCGGAATAATAA---------CGAACATTTA-GACTA----TGT--ACAATAAATACATTC--TCA-TACGTGTCTGTTA--T-TG-T-----CGTTTACAAA--------CTTTTACATCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgttttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--T----CA--TGTA-TTTTCTCAAAAAGTA-TCAAAGC----AATATCTTTGAAATTTGGACTTCAATAAGAA---------AGATCATTTC-GGGTA----TGT--A----AAATACA-----TAA-T---TGTCTGGTA--ATTG-TATATAC--------AAC------TTTTAAGAGAGCTT-CACT-ATATTTTGACGAAAATATTCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : TTC-TCAAAAGGTA-TCAAAACAA--TAT--ACTTGAAATTTGGACTTGGATAAGAA---------ATAACTTTTA-GGCTA----TATAAA----AAAT-CA-----TAA-C---TGTCTGTTA--A-TG-T-----CATATACCAA--------TTTCAATAGCTCTACC-CC-ATATTTTGACGAAGATAT--TTGAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--T----TA--TGTA-TTTTCTCTAAAAGTA-TCAAAGT----AATTTCCTTGAAATTTGGACTTGGATAAGAA---------AGAAGAGT----GCTA----TGT--A----AACT-CAATACAGAT-T---TGTCTGTTT--A-TG-T-----C--------G--------T
gi|8 : TATTTTAACGAAGATAT--ATGAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 222 22 1 3333333 33333333 77777777777777777777777777777 222222222222222222222222 1 22222 1111111 1 4444444444 111 999999999999999999999999999999999999999999999999999 2222 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 55555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 6 66 5 99999 0 0 1 55 8888888 1 4444444444 000 5 000000000000000000000000000000000000000000000000000 6 4444 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ ............................. . ........................ . .. . .. . . .. . ..... . . . .. ....... . .......... ... . ................................................... . .... . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 44444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 0 99 0 00000 4 7 4 77 9999999 4 0000000000 000 7 000000000000000000000000000000000000000000000000000 7 5555 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G------T--------TTTAATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATATA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGT-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTT-TATCAAAAATCA-TCTGGACAA----TTCCCTTGAAATTTAGACTTCGACACGAAATAACA---CAGCCATAT--G----AAAT-CA--ATCAATA-AT---TGTCTATTTA-TGT-----C--------G------TATACACTTTTTTATG--------------ACGCTA-C-----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATTC----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT-T--CAAAA-GCA-TCAAAGC----AATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT-
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT-
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTGT--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---TC-AT---TGCCTGTAAA-TGT-----C--------A------C--------TTTAATG--------------GCGTTA-TGCC-ATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTATGTA
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTCT--CAAAAAGTA-TCGAATC----AGTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTAT---TGT---TTAA-TTT-----G--------GCAATAAT--------TATGATAAACAAATGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC-T--CAAAAAAAATTTAAAGCAATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--TC-ATACGTGTCTGTTAT-TGT-----C--------G------TTTACAAACTTTTACA--------------TCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTCT--CAAAAAGTA-TCAAAGC----AATATCTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA-------TA-AT---TGTCTGGTAATTGTATATAC--------AAC----T--------TTTAAGA--------------GAGCTT-CACT-ATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC-T--CAAAAGGTA-TCAAAACAA--TAT--ACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------TA-AC---TGTCTGTTAA-TGT-----CATATACCAA------T--------TTCAATA--------------GCTCTACC-CC-ATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTCT--CTAAAAGTA-TCAAAGT----AATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--ATACAGA-TT---TGTCTGTTTA-TGT-----C--------G------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 222 22 1 3333333 33333333 77777777777777777777777777777 222222222222222222222222 1 22222 1111111 1 4444444444 111 888888888888888888888888888888888888888888888888888 2222 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 55555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 6 66 5 33333 3 0 1 55 8888888 1 4444444444 000 5 888888888888888888888888888888888888888888888888888 6 4444 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ ............................. . ........................ . .. . .. . . .. . ..... . . . .. ....... . .......... ... . ................................................... . .... . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 44444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 0 99 0 11111 2 7 4 77 9999999 4 0000000000 000 7 888888888888888888888888888888888888888888888888888 7 5555 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA--NATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAAT-GT-----C--------G------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAAT-GT-----C--------G------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGT-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTT-TATCAAAAATCA-TCTGGACAA----TTCCCTTGAAATTTAGACTTCGACACGAAATAACA---CAGCCATAT--G----AAAT-CA--ATCAATA-AT---TGTCTATTTAT-GT-----C--------G------TATACACTTTTTTATG--------------ACGCTA-C-----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATTC----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT-T--CAAAA-GCA-TCAAAGC----AATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT-
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT-
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTGT--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---TC-AT---TGCCTGTAAAT-GT-----C--------A------C--------TTTAATG--------------GCGTTA-TGCC-ATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTAT
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------gta
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTCT--CAAAAAGTA-TCGAATC----AGTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTAT---TGT---TTAAT-TT-----G--------GCAATAAT--------TATGATAAACAAATGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC-T--CAAAAAAAATTTAAAGCAATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--TC-ATACGTGTCTGTTATT-GT-----C--------G------TTTACAAACTTTTACA--------------TCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTCT--CAAAAAGTA-TCAAAGCAA--TAT--CTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA--T-----A-AT---TGTCTGGTAATTGTATATAC--------AAC----T--------TTTAAGA--------------GAGCTT-CACT-ATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC-T--CAAAAGGTA-TCAAAACAA--TAT--ACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------TA-AC---TGTCTGTTAAT-GT-----CATATACCAA------T--------TTCAATA--------------GCTCTACC-CC-ATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTCT--CTAAAAGTA-TCAAAGT----AATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--ATACAGA-TT---TGTCTGTTTAT-GT-----C--------G------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 222 22 1 3333333 33333333 77777777777777777777777777777 222222222222222222222222 1 2222 1111111 1 4444444444 111 888888888888888888888888888888888888888888888888888 2222 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 55555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 6 66 5 7777 3 0 1 55 8888888 1 4444444444 000 5 888888888888888888888888888888888888888888888888888 6 4444 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ ............................. . ........................ . .. . .. . . .. . .... . . . .. ....... . .......... ... . ................................................... . .... . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 44444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 0 99 0 4444 2 7 4 77 9999999 4 0000000000 000 7 888888888888888888888888888888888888888888888888888 7 5555 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAAT-GT-----C--------G------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT-T--CAAAAAGTA-TCAAAGCAA--NATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAAT-GT-----C--------G------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGT-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTT-TATCAAAAATCA-TCTGGACAA----TTCCCTTGAAATTTAGACTTCGACACGAAATAACA---CAGCCATAT--G----AAAT-CA--ATCAATA-AT---TGTCTATTTAT-GT-----C--------G------TATACACTTTTTTATG--------------ACGCTA-C-----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATTC----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT-T--CAAAA-GCA-TCAAAGCA----ATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT-
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT-
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTGT--CAAAAAGTA-TCAAAGCAA--AATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---TC-AT---TGCCTGTAAAT-GT-----C--------A------C--------TTTAATG--------------GCGTTA-TGCC-ATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTAT
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------gta
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTCT--CAAAAAGTA-TCGAATCA----GTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTAT---TGT---TTAAT-TT-----G--------GCAATAAT--------TATGATAAACAAATGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC-T--CAAAAAAAATTTAAAGCAATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--TC-ATACGTGTCTGTTATT-GT-----C--------G------TTTACAAACTTTTACA--------------TCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTCT--CAAAAAGTA-TCAAAGCAA--TAT--CTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA--T-----A-AT---TGTCTGGTAATTGTATATAC--------AAC----T--------TTTAAGA--------------GAGCTT-CACT-ATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC-T--CAAAAGGTA-TCAAAACAA--TAT--ACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------TA-AC---TGTCTGTTAAT-GT-----CATATACCAA------T--------TTCAATA--------------GCTCTACC-CC-ATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTCT--CTAAAAGTA-TCAAAGTA----ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--ATACAGA-TT---TGTCTGTTTAT-GT-----C--------G------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 222 22 1 3333333 33333333 777777777777777777777777777777 222222222222222222222222 22 22 1111111 1 4444444444 111 88888888888888888888888888888888888888888888888888888 2222 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 555555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 11 5 66 888 0 1 55 8888888 1 4444444444 000 5 88888888888888888888888888888888888888888888888888888 6 4444 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ .............................. . ........................ . .. . .. . .. . .. ... . . .. ....... . .......... ... . ..................................................... . .... . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 444444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 55 0 66 888 7 4 77 9999999 4 0000000000 000 7 88888888888888888888888888888888888888888888888888888 7 5555 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAG-T-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTTTATCAAAAATCA-TCTGGAC--A---ATTCCCTTGAAATTTAGACTTCGACACGAAATAACA---CAGCCATAT--G----AAAT-CA--ATCAATA-AT---TGTCTATTTA-TGT-----C--------GTATACACTT--------TTTTATG--------------ACGCTA-C-----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATT-C----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT--TCAAAA-GCA-TCAAAGC--A---ATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT--
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT--
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----G-TGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTG-TCAAAAAGTA-TCAAAGCAAA---ATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---TC-AT---TGCCTGTAAA-TGT-----C--------A--------C--------TTTAATG--------------GCGTTA-TGCC-ATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTAT
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------gta
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTC-TCAAAAAGTA-TCGAATC--A---GTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTAT---TGT---TTAA-TTT-----G--------GCAATAA--T--------TATGATAAACAAATGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC--TCAAAAAAAATTTAAAGC-AATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--TC-ATACGTGTCTGTTAT-TGT-----C--------G--------TTTACAAACTTTTACA--------------TCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTC-TCAAAAAGTA-TCAAAGC--A---ATATCTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA-------TA-AT---TGTCTGGTAATTGTATATAC--------AAC------T--------TTTAAGA--------------GAGCTT-CACT-ATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC--TCAAAAGGTA-TCAAAAC-AA----TATACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------TA-AC---TGTCTGTTAA-TGT-----CATATACCAA--------T--------TTCAATA--------------GCTCTACC-CC-ATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTC-TCTAAAAGTA-TCAAAGT--A---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--ATACAGA-TT---TGTCTGTTTA-TGT-----C--------G--------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 222 22 1 3333333 33333333 777777777777777777777777777777 222222222222222222222222 22 22 1111111 1 4444444444 111 88888888888888888888888888888888888888888888888888888 2222 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 555555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 11 5 66 888 0 1 55 8888888 1 4444444444 000 5 88888888888888888888888888888888888888888888888888888 6 4444 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ .............................. . ........................ . .. . .. . .. . .. ... . . .. ....... . .......... ... . ..................................................... . .... . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 444444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 55 0 66 888 7 4 77 9999999 4 0000000000 000 7 88888888888888888888888888888888888888888888888888888 7 5555 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAG-T-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTTTATCAAAAATCA-TCTGGAC--A---ATTCCCTTGAAATTTAGACTTCGACACGAAATAACA---CAGCCATAT--G----AAAT-CA--ATCAATA-AT---TGTCTATTTA-TGT-----C--------GTATACACTT--------TTTTATG--------------ACGCTA-C-----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATT-C----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT--TCAAAA-GCA-TCAAAGC--A---ATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT--
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT--
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----G-TGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTG-TCAAAAAGTA-TCAAAGCAAA---ATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---TC-AT---TGCCTGTAAA-TGT-----C--------A--------C--------TTTAATG--------------GCGTTA-TGCC-ATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTAT
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------gta
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTC-TCAAAAAGTA-TCGAATC--A---GTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTAT---TGT---TTAA-TTT-----G--------GCAATAA--T--------TATGATAAACAAATGTTAATAGCGCTA-C-TCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC--TCAAAAAAAATTTAAAGC-AATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--TC-ATACGTGTCTGTTAT-TGT-----C--------G--------TTTACAAACTTTTACA--------------TCGCTA-C-CCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTC-TCAAAAAGTA-TCAAAGC--A---ATATCTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA-------TA-AT---TGTCTGGTAATTGTATATAC--------AAC------T--------TTTAAGA--------------GAGCTT-CACT-ATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC--TCAAAAGGTA-TCAAAAC-AA----TATACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------TA-AC---TGTCTGTTAA-TGT-----CATATACCAA--------T--------TTCAATA--------------GCTCTACC-CC-ATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTC-TCTAAAAGTA-TCAAAGT--A---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--ATACAGA-TT---TGTCTGTTTA-TGT-----C--------G--------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
blockSeqs : T T TTC A AC A T TTATTAA C TC ATTCAACATGCAT A TTTCTAACCCGCC CA A AT G G T AA TTT T TC ACAAT A AGTTTGT ACG T GGCAATAATTATGATAAACAAATGTTAATA C GCC T TCGG T
blockSeqs : C A C C G T AT GTGCGAAACAAT . GGTTTTATTTTT . G . . C . A . T TA AAA A ATACAGA . . CGTTTACAAACTTTTACA . TCA . TG .
blockSeqs : . T . A . . C . A . T TA AC . TTCTC . . CATATACCAATTTCAATA . CCT . AT .
blockSeqs : . T . A . . C . . . T TC A . TTTC . . ATATACAACTTTTAAGA . ACT . T .
blockSeqs : . T . A . . . . . . T TA A . TA . . CACTTTAATG . CC . T .
blockSeqs : . T . A . . . . . . G . A . TA . .
blockSeqs : . T . A . . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . .
blockSeqs : . T
blockSeqs : . T
blockSeqs : . T
blockSeqs : . .
blockSeqCons : ** TA TTTN****** NCT*
originalCons : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTCGGCTATGT--A----AAAT-CA--TT---TA-AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-C-CC-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
finalCons : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----G-T-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTAGGCTATGT--A----AAAT-CATTTN------AT---TGTCTGTTAA-TGT-----C--------G--------T--------TTTNATA--------------GCGCTA-CNCT-ATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 222 22 1 3333333 33333333 77777777777777777777777777777 222222222222222222222222 22 2222222 1111111 1 333333333333333333 11111111111111111111111111111111111111111111111 22222
lowQualScore : 1 1 111 1 00 1 2 9999999 1 99999999 55555555555555555555555555555 2 000000000000000000000000 0 66 3 66 4 11 5 5555555 0 66 8888888 1 999999999999999999 5 44444444444444444444444444444444444444444444444 1 7 4 6 22222 6
lowQualScore : . . ... . .. . . ....... . ........ ............................. . ........................ . .. . .. . .. . ....... . .. ....... . .................. . ............................................... . . . . ..... .
lowQualScore : 0 0 000 0 77 0 0 0000000 0 00000000 44444444444444444444444444444 9 999999999999999999999999 1 11 6 11 0 55 0 4444444 7 11 9999999 4 444444444444444444 7 55555555555555555555555555555555555555555555555 0 5 3 7 77777 7
consensus : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTAGGCTATGT--A----AAAT-CA--TT---T-NA---T---TGTCTGTTAAT-GT-----C--------G--------T--------T--------------TTAATAGCGCTACNCCATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
Reference ( family-2294 ) : NNNTCTNTGATTNTTTCCGCTNTA-TCATTTTNATGCAAACC------GATGGAGNAA------ANAACTTTT----GT-CG--AAACA----T--A----TATATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGACATT--TTATGTA--T-TTT--TCAAAAAGTA-TCAAAGC-AA---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAACATTTAGGCTATGT--A----AAAT-CA--TT---T-NA---T---TGTCTGTTAAT-GT-----C--------G--------T--------T--------------TTNATAGCGCTACNCTATATTTTGACGAAGATA-T-T---GAA-ATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATACA
gi|1 : TCTGTGATTAT---CGCTTT---CATTTTGATA-AAATC------ACTGGAGAAACACCAGAAAGCTTTTTACAGT-TGGTAAACAAACTT--AAGTTCATATACTTAACGTGACAGCTACTCTGCTACCTCACAT-TTTATG-----------T------------ACCTGACATT--TT-TGTC--T-TTTTATCAAAAATCA-TCTGGAC--A---ATTCCCTTGAAATTTAGACTTCGACACGAAATAACAC---AGCCATAT--G----AAAT-CA--ATCAAT-AA---T---TGTCTATTTAT-GT-----C--------GTATACACTT--------T--------------TTTATGACGCTAC----TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|10 : tatCTATACTCATTTTAATGTCAACTTTATTAAATGAAGCAT------TCAATTTAT----ATTC----AACA----TGCA----TATATACTGAACGGAACAGCTAACCCGCAAC
gi|11 : atcTATACTCAACAGAAGATCTAAC--------TTACAG-TATATC-----------T------------ATCTAGTAGT--TAAAATAATTGTTT--TCAAAA-GCA-TCAAAGC--A---ATTTCTTTAAAATTTGAAgtta
gi|14 : TGCTGAACGGAACAACTAACCCGCCACCTGATAT-TTT-TGGGTTTTATTTTT------------ACCTGACATT--TT-TGGG--T-TTT--
gi|16 : CA----T--A----AATATACTGAACGGAACAGGTTATCCGCCATCT--CATATTTATG-----------T------------A
gi|17 : tttggaatacatTGAACGGAGCAGCTAACCCGTCACCGGACAT-GTTA--------------------------AACAGATATCCACTGTATA--T-TTT--
gi|18 : ACTGAACGGAACAGCTAACCTGCAACTTGACAT-TTTCTG-----------T------------Agt
gi|19 : taATATACTGAACGGAACAGCTAACCCGCCGCCtttc
gi|2 : cgtatcaaattaaaaTCTTTGATTTTTTCCACCCTA-TCATTTTCATGCAAACC------GATGGAGTAA------ATAACTTTT----GTGCG--AAACA-------A----TAAATACTGAACGGAACAGCTAACCCGCCACCTGACAT-TTTATG-----------T------------ACCTGGCATT--TTATGTA--T-TTTG-TCAAAAAGTA-TCAAAGCAAA---ATTTCCTTGAAAGTTGGACTTGAATAAGAAAGGACATTTCGGCTATGT--A----AAAC-TA--TT---T-CA---T---TGCCTGTAAAT-GT-----C--------A--------C--------T--------------TTAATGGCGTTATGCCATATTTTGAAGAAGATA-T-T---GAATATACAAAAGTGGCGGGTTAGCTGCTCCGTTCAGTAT
gi|20 : ataATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------gta
gi|21 : ATACTGAAATGAACAGCTAACTGGCCATCTGGCAT-TTTGTG-----------T------------
gi|22 : CTAACCCACCACTTGACAT-TTTATG-----------T------------A
gi|3 : cattttatgtatATATACTGAACGAAACAGCTAACCCGCCACCTGACAT-TTTATG-----------TTTCTAACCCGCCACCTAACATT--TTATGTA--T-TTTC-TCAAAAAGTA-TCGAATC--A---GTTTCCTTGAAATTTGAACTTGAATAAGAACTATCCTTTAGGACA-AC--AC---AGAC-CAAGTT---TGTA---T---TGT---TTAAT-TT-----G--------GCAATAA--T--------TATGATAAACAAATGTTAATAGCGCTACTCAACATTGCGACAAAGATA-T-TG--GAA-ATACAAAAGTGGCGGGTTAGCTGCTCCATT-AGTATACA
gi|4 : tgtatcaaataaaaccggatgTATACTGTACAGAACAGCTAACCCGCCACCTGACAT-TTAATG-----------T------------A-CTGACATT--TTATGTA--T-TTC--TCAAAAAAAATTTAAAGC-AATTTATTTCTTTGAAATTTGTATCGGAATAATAACGAACATTTAGACTATGT--ACAATAAATACA--TTC--T-CA---TACGTGTCTGTTATT-GT-----C--------G--------TTTACAAACT--------------TTTACATCGCTACCCTATAGTTT
gi|5 : tcactggagaccacaaatatatattgacaaaattggatgtgtttATACCGAACGGCACAGCTAACCCGCCACCAGACAT-TTTGTT-----------T------------ACCTGACATT--TCATGTA--T-TTTC-TCAAAAAGTA-TCAAAGC-AA----TATCTTTGAAATTTGGACTTCAATAAGAAAGATCATTTCGGGTATGT--A----AAATACA--T------AA---T---TGTCTGGTAATTGTATATAC--------AAC------T--------T--------------TTAAGAGAGCTTCACTATATTTTGACGAAAATA-T-TCGGGAA-ATACAAACGTGGCGGGTTAGCTGTTCCGTTCAGTTTAa
gi|6 : -TTC--TCAAAAGGTA-TCAAAAC-AA----TATACTTGAAATTTGGACTTGGATAAGAAATAACTTTTAGGCTATATAAA----AAAT-CA-------T-AA---C---TGTCTGTTAAT-GT-----CATATACCAA--------T--------T--------------TCAATAGCTCTACCCCATATTTTGACGAAGATATT-T---GAA-ATGAAAAAAAGGCGGAATAGCTGTTCCGTTTTGTATA
gi|7 : ATATACTTAACGGAAAAGCTAACCTGCCATCTGACAT-TTTATG-----------T------------ACTTGGCATT--TTATGTA--T-TTTC-TCTAAAAGTA-TCAAAGT--A---ATTTCCTTGAAATTTGGACTTGGATAAGAAAGAAGAGT---GCTATGT--A----AACT-CA--AT---A-CAGATT---TGTCTGTTTAT-GT-----C--------G--------T--------
gi|8 : TATTTTAACGAAGATA-TAT---GAA-ATACAAAAATGGCGGGTTAGCTGTTCCGTTCAGTATACAataacaatttt
gi|9 : tacacatcttttggatattttacactgttatctaatacggatatgttcgtaaccataccataaataataaaaccatgtatcgcataaacactttgtgcctgatCAAATGTGACGGGTTAGCTGTTCCGTTCAGTATATAgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AACCAAGTCTGTATTATTAATTTTGAAAGTAATTTGAAAATTTTCATAATTAATGAGATGGGTATTCAAATCAGTTTTCACA
Unaligned ( gi|13 ): AGTGTGTATTATAAATTTGACAATGATTAGAATAATTTCATAATTATTGAAATGGGTAGTGAAATCAATTTTCACAA
Unaligned ( gi|15 ): TAAAATTATTGAAATGGATAGTCTTTCAGTTTTCACACGATAGCCAAAAGTGGAAGGTTAGCTGT
Unaligned ( gi|23 ): TGTACTGGAATAAGAAAGGATACTTAGGTTAACAA