lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111111111 222222222222
lowQualScore : 11111111 1 1 11111111 11111111111 111111111111111111111111111111111111111111 11 33333333333333333 1 1 2222222222222 1 111 2222222222222222222 1 11 2222222 555555555555555555555555555555555 22222 2222 111 2222222 11 8888888888888888888888 111 888888888888888888888 22 1 1 222 000000000000 1 1 1 1
lowQualScore : 44444444 4 1 5 44 44 2 33333333 33 1 7 77 2 0 6 3 0 66666666 22 6 4 77777777777 0 0 111111111111111111111111111111111111111111 1 0 0 2 7 88 55 00000000000000000 55 6 55 5 1 7 4 8 3 2 9 7777777777777 3 000 4444444444444444444 3 22 1 11 8 3333333 0 1 111111111111111111111111111111111 00000 3333 1 999 5 3 3 999 2 1111111 9 55 3 5555555555555555555555 444 2 55 3 555555555555555555555 0 4 7 22 3 66 5 5 333 555555555555 6 6 5 5 6 6 6 5 5
lowQualScore : ........ . . . .. .. . ........ .. . . .. . . . . . ........ .. . . ........... . . .......................................... . . . . . .. .. ................. .. . .. . . . . . . . . ............. . ... ................... . .. . .. . ....... . . ................................. ..... .... . ... . . . ... . ....... . .. . ...................... ... . .. . ..................... . . . .. . .. . . ... ............ . . . . . . . . .
lowQualScore : 99999999 7 9 0 22 22 9 22222222 99 9 3 77 9 9 2 5 1 33333333 22 6 6 55555555555 2 3 111111111111111111111111111111111111111111 1 5 5 2 1 11 00 33333333333333333 00 2 66 8 2 4 4 4 6 0 9 2222222222222 7 000 0000000000000000000 0 77 4 00 0 4444444 8 4 333333333333333333333333333333333 22222 4444 0 888 0 8 2 000 2 0000000 0 77 7 2222222222222222222222 222 5 55 7 777777777777777777777 7 7 3 33 0 55 0 0 000 000000000000 0 0 0 0 0 0 0 0 0
consensus : GTCAA-AN-----TTTTATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACAATAATAAATATAA-CAACAAAGCCATAAACTCACA-CACCCACACCACAC-ACT---T-CACGCACACA-GCTGC-T-CACACAC--CACACAC--TCA-GCACACANCTCCCTCGCACACCACACAATACTTTGTGGAAAAGCATGA-TATAAC--A---T--TTTTT-A----CAGT--ATTTATAAATA-GACCTCATTATATCAACAT-TTCCATAAAGAAAATCTAATTCATANCTTAN---AATCA---TTATTGAAAAAAGTACG---AC----AAATNT----AT---TGTGACGACGACAATAATCA--ATA-AT-ATTTGTGTAGGGCGATTATTATACC-A-TCACCGGAAGTTCA------CAGATCAAGT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTACGAAGTTCTTATCAGTATTGTTTGCTAGCAGTATTGNTAAGAGT-------GTAATT-----ATTGTTGCTGAAATGTACAACGNATGTGTTATGACGA----GGT--TCGACTGTNATTTACTCGTTTAAAGTCGNAGAANNGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
Reference ( gi|1 ) : GTCAA-AT-----TTTTTTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACAATAATAAATATAA-CAACAAAACCATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACA-GCTACCT-CACACAC--CACACACT-TCACGCACACAGCTACCTCGCACACCACACAATACTTTGTGGAAAAACATGT-TATAAC--A---T--TTATT-A----CAGT--ATTTATAAGTA-GACTTCATTAAATAAACAT-TTCTATAAAGAAAATCAAATTCATATCTTAC---AATCA---ATATTGAAAAAAGTACG---AC----AAATTT----AT---TATGACGATGAGAATAATCA--ATA-ATAATTTTTGTAGGGCGATTATTATACCTAATCACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATGAATTATGACAACG--GGTAAGCGACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|5 : GTTAA-AA-----TTTTATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATAACAATAGATATAA-CAACAAAGCC------------------CGGCATAA-ACT---------CACGCA-GC--------CACAC--CACACACT-TCACACACACAGCTACCTCGCACACCACACAATACTTTGTGGAAAAGCATGA-TATAAC--A---T--TTTTTCA----CGGT--ATTTATAAATA-GACTTCATTAAATAAACAT-TTCCATAAAGAAAATCTTATTCATATCTTAC---AATCA---TTATTGACAAAAGTACA---AC----AAATGT----AT---TATGACGATGATAATAATCA--ATA-ATCATTTTTGT-------TT-----------TCACAGAAA-------GGTCT-GATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|3 : aaGTCAAGAT-----TTTTGTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACATTGATAAATATAA-CAACAAAGCCATAAACT---------CACACC----------------GCA-------TACTT-CACTCAC---GCATGCGGTCA-ATACACATCTCACTCGTACACCACACACTACTTTGTG-AAAAACATGTATAAAAT--AC--T--TTTTT-T----CAGT--ATTTATAAATA-GACCTCATTATATCAACAT-TTCCATAAAGAGTATCTAATTCATAACTTAC---ACTAA---TTATTGAAAAAA-TACG---ACTACAAAATCT-----T---TGTGACAACAACAATAATCA--ATA-AAAA---ATGTAGGGTGATTAGTATACC------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCGct
gi|8 : aaGTCAA-AG-----TTTTATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACACCAATAAATATAA-CAACAAAAC----------------------CATAA-A-T---T-CACACAC-----CCACAT-CACACACTTCGCGCACG--CA-GCACACAGCTACCTCGCACACCAAACAAAACTTTGTGGAAAAGCATGA-AATAAC--A---TC-TTTTT-A----CAGT--ATTTAAAATTA-GACTTCATTATATAAACACACACAATCAATAAAAT-AAA--CATAGTTTGTAGAAAGCAAACATAAAGAAAAAGGT--G---AC----AAA---------------GGCGA--AGAACAAT
gi|18 : tcaaGTCAA-AA-----TTTTATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTAT--------------GT-ACAATAATAAATATAA-CAACAAAGCCATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCACt
gi|22 : tcaaGTCAA-AA-----TTTTATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACAATAAT
gi|12 : tcaaaGTCAA-TT-----TTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACAGTAACATTAATAA-CAACAAAGCCA-AAACACACA-CACACACA-CAGACGAGT---G-CGCGCACACA-GACGCGTGCGCACAC--t
gi|11 : agtccaaGTCAA-ATCAAGATTTTATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATA---CTGTTATGA-TGATGACA-TGACAAATACAAACAACAAAGCCATAA---CA-A-AACACGCA-CATA----------CACGTACA-A-GC-GCC--CACACAC--gctgaccaaattaataataaaattgaaagcattaaatagtttgatatttcgtacctttttcagtattccatcatatgataaataggcatcattttat
gi|9 : tacaaaacagttgttgctctgttgaattatttttatcaaTCAG-AT-----TTGATT-AGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACAATAATATATAAAA-CAACAAAGACATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCATACA---TG---------AT--CACA---------GCAAACACCTCCCTCGCACGCCACACAATACT--------AAGCATGA-TATAAT--A---TTCTTTTT-G----CTGT--ATTTATAAATA-TGCCATATTATTTTAACAT-TTCAATAAAGAATATCAAATTTATAACTTAG---AATAT---TTATTGAAAatttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|17 : tTCAA-TA-----TTTTATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCAATAATAAATATAA-CAACAAAGCAATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCACACca
gi|10 : CAA-AA-----TTTTATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACACAAATAAATATAA-CAACAAAGCCATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCACACA---TGC-T-CACA------------------GCACACAGCTCCATTGCACACCCCACAGTACTTTTTGGAAAAGCATGA-TATAAC--A---T--T--TT-A----CAGC--ATc
gi|4 : -----TTTTATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACAATAATAAATATAA-CAATAAAGCCATAAACTCACA-CACCCAC------------------CGCGCACA-----TTT-CACGCAC---ACATACA-GAACGCACGC--C--CCTCAAACACCACATAAAACGTTATAAGTAAGCATGA-TATAAC--ACTTT--TTTTT-T----CAGT--ATTTGTAAATA-CAGCGCATTATATTAACAC-TACCATAAATAAAATGCAATTCATAACTAAG---AATCA---TTATTGAAATAA-TACGAATAC----AAATAT----GT---TGTGACGATAACGATAACTA--ATA-ATTACTTGTATAGGGCGACTATTATACC-AATT----GA------------CAGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTGgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|20 : atttcacga-----TTTTATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATG-------ATAATGATAAACATAATCAACAAAAC
gi|23 : GCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGagcaaagccaaa
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACAATAATAAATATAA-CAA
gi|14 : TATCATGA-TAGT-ACAATCACAAATATAA-CAGCAAAGTCATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCATAC---TTA---------AT--TACA---------GCAAATATCTCCCTCACATAGCACGCAATACTTT-------------------AT--A---T--TTA-------------------TAAATACGAC-TCATTATATCGACAT-TTCCATAAAGAAAATCTAATTagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCACACATGCT-------CACAG--CATACACC-TC-------------CCTCGCACACCATACAATACTTTGCGGAAAACCATGA-TATAACCTA---TG-TTTTT-A----CAGT--ATTTAT--------------TATATCAACAT-TTTCATAAAGAAAATCTAATTCATATTTTAA---ATTTG---TTATTGAAA
gi|6 : tatacatgtaaagtgcaataactattaattgaagtataatCGCCGCAC-ACT---C-CACGCACCCATGCTA-------ACAG--CACACCCC-TC-------------CCTCGCAAACCACACCCTACTTTGTGGA------TGA-TATAAC--ACACT--TTTTT-T----CAGT--ATTTATAAATA-TACCTCATTATATCAACAT-TTCCATAAAGAAAATC----TAATA-------------------ATTGAAATAA-TACG---ACTA--AAATTT----GT---TGTGACGATAACAATAATCA--ATACAT-ATGTGTATAGTGTGAGTGTTATACCTAATGACCGGAA--------GTTCAGATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAG--AAGTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTca
gi|21 : ACAAACCTCCCTCGTACGCCACACACTACTGTGTGGAAAAGCATGA-AATAAC--A---TACTTACC-AGGCCCAGTAAATTTATagc
gi|7 : TACCTCGCACACCACACACTCCTTTGTGGAAAAGCATGA-TAAACC--A---T--CTTTC-A----CAGT--ATTTATAAGTA-GACTTCATTAAATAAACAT-TTCCATAAAGAAAATCTAAATCATATCTTAC---AATCA---TTATTGACAAAAGTACG---AC----AAATTT----AT---TATGACGATGATAAT
gi|13 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaAAATACG---AC----G--TTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A--ATTTGAGCAGGGCGATTG------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|2 : aaactgTATTATACCTATTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTGGTAA---------------CT-----ATTGCTGCTGAAATGTACAACGCAAGG-TTCT---------------CGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|16 : TGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGT-------GTAATTTAAAAATT-----TAAAATATGCAACGTATGTGTGATGACAAAT--GGTTCTCAACTGGTATTTACTCGTTTAAAGTcaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|5 : gAATC-----ATTATTGACAAAA-GTACAACAAATGTATTATGACGATGATAATAATCAATAATCATTT--TTGTTT----TCACAGAAAGGTCTGAtaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 111111111111111111111111111111 111111111111
lowQualScore : 11111111 666666666666666666666666666666 222222 11111 1 222222222 111 55555555555555555555555555 1111 11 6666666 22222 111 666666666666666666666666 000000000000
lowQualScore : 555 33 33 2 22222222 33 2 2 4444 2 6666 3 44 2 66666 555555555555555555555555555555 0 2 0 1 1 3 44 333333 3 4 3 00000 2 2 0 4 0 888 111111111 1 88 1 99 6 666 88 1 77 00000000000000000000000000 3 5 6666 2 1 1 999 0 1 3 1 11 5555555 0 55555 000 1 888888888888888888888888 1 0 1 22 2 2 2 4 222222222222 3 2 3 3
lowQualScore : ... .. .. . ........ .. . . .... . .... . .. . ..... .............................. . . . . . . .. ...... . . . ..... . . . . . ... ......... . .. . .. . ... .. . .. .......................... . . .... . . . ... . . . . .. ....... . ..... ... . ........................ . . . .. . . . . ............ . . . .
lowQualScore : 444 99 99 7 33333333 77 5 7 9999 9 1111 3 11 9 99999 111111111111111111111111111111 5 3 2 2 8 3 66 333333 6 0 2 00000 6 6 1 8 8 888 000000000 0 00 4 22 7 888 33 0 11 00000000000000000000000000 0 7 3333 5 7 0 000 8 0 2 2 55 0000000 8 00000 555 0 333333333333333333333333 0 7 0 00 5 5 5 0 555555555555 0 5 0 0
consensus : GTCAA-AATTTTATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATATAA-CAACAAAGCC----ATAAACTCACA-CACCCACAC-CGCAC-ACT---T-CACGCACACA------TGC-TCACA-AC---------CA-GCACACANCTCCCTCGCACACCACACAATACTTTGTGGAAAAGCATG-ATATAAC--A---T--TTTTT-ACAGTATTTATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCT-AT-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-GT-ATGACAA--GGT--TC--GACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAA-ANTTTTATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATATAA-CAACAAAGCC----ATAAACTCACA-CACCCACAC-CACAC-ACT---T-CACGCACACAG-C---TGC-TCACACACCACACACT-CA-GCACACANCTCCCTCGCACACCACACAATACTTTGTGGAAAAGCATG-ATATAAC--A---T--TTTTT-ACAGTATTTATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTANAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACC--AT-CACCGGAAGTTCAC------AGATCAAGT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTACGAAGTTCTTATCAGTATTGTTTGCTAGCAGTATTGNTAAGAGT-------GTAATT-----ATTGTTGCTGAAATGTACAACGNATGTGTTATGACGA--GGT--TC--GACTGTNATTTACTCGTTTAAAGTCGNAGAANNGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|1 : GTCAA-ATTTTTTTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATATAA-CAACAAAACC----ATAAACTCACA-CACCCACAC-CATAC-ACT---T-CACGCACACAG-C---TACCTCACACACCACACACTTCACGCACACAGCTACCTCGCACACCACACAATACTTTGTGGAAAAACATG-TTATAAC--A---T--TTATT-ACAGTATTTATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAAT-CACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATGAATTATGACAACGGGTAAGC--GACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAA-AATTTTATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATATAA-CAACAAAGCC----ATAATCTTACA-CACTCACAC-CACAC-ACT---T-AACGCACACA------TGC-TCACA---------------GCACACAGCTCCATTGCACACCCCACAGTACTTTTTGGAAAAGCATG-ATATAAC--A-------TTTT-ACAGCAT
gi|11 : TCAA-GATTTTATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---ACA----TGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACACGCACAT-A-------CACGTACA-AG-C----GC-CCACACACgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaGTCAA-TTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAATAA-CAACAAAGCC----A-AAACACACA-CACACACA--CAGACGAGT---G-CGCGCACACAGACGCGTGC-GCACACGCatttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaaAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG-------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTC---------TTGTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACAtgaccaaattaataataaaattgaaagcattaaatagtttgatatttcgtacctttttcagtattccatcatatgataaataggcatcattttat
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATATAA-CAGCAAAGTC----ATTAAGTCAGA-CACCCGCAC-CACAC-TTT---T-CCCGCA----------TAC-TTA---ATTA-------CA-GCAAATATCTCCCTCACATAGCACGCAATACTTT--------------ATA---------------TTT-A---------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATAC-CACAT-ACT---T-CA-GCACACA------TGC-TCACA---------------GCATACACCTCCCTCGCACACCATACAATACTTTGCGGAAAACCATG-ATATAACCTA---TG-TTTTT-ACAGTATTT--------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGT-------GTAATTTAAAAATT-----TAAAATATGCAACGTATGTGTGATGACAAATGGTTCTC--AACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAA-TATTTTATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATATAA-CAACAAAGCA----ATAAACTCACA-CACCCACAG-CACAC-AAT---T-CATTCACACtaa
gi|18 : GTCAA-AATTTTATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATATAA-CAACAAAGCC----ATTACCTCACA-CACCCACAT-CACAC-ACTAACTATACGCACc
gi|2 : tcaaTATTATACCT-ATTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA------------A--GGT--TCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTTATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAAAA-CAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTCCCTCGTACGCCACACACTACTGTGTGGAAAAGCATG-AAATAAC--A---T--aa
gi|22 : GTCAA-AATTTTATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTTGTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATATAA-CAACAAAGCC----ATAAACTCACA-C---------CGCAT-ACT---T-CACTCACGCA------TGC--------------GGT-CA-ATACACATCTCACTCGTACACCACACACTACTTTGTGAAAAA-CATGTATAAAAT--AC--T--TTTTT-TCAGTATTTATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCAC-GATTTTATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATATAA-CAATAAAGCC----ATAAACTCACA-CACCCACCG-CGCAC-ATT---T-CACGCACACA-----------TACAGAACGCACGC---------------CCCTCAAACACCACATAAAACGTTATAAGTAAGCATG-ATATAAC--ACTTT--TTTTT-TCAGTATTTGTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACC------------AATTGAC------AGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAA-AATTTTATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATATAA-CAACAAAGCCCGGCATAAACTCACG-CAGCCACAC-CACAC-ACT-------------------------TCACACAC----------------ACAGCTACCTCGCACACCACACAATACTTTGTGGAAAAGCATG-ATATAAC--A---T--TTTTTCACGGTATTTATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTTTTGT-------TT-----------T-CACAGAAAGGT--C------TGATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGC-CGCAC-ACT---C-CACGCACCCA------TGC-TAACA---------------GCACACCCCTCCCTCGCAAACCACACCCTACTTTGTGGA------TG-ATATAAC--ACACT--TTTTT-TCAGTATTTATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAAT-GACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAGAA--GTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : CCTCGCACACCACACACTCCTTTGTGGAAAAGCATG-ATAAACC--A---T--CTTTC-ACAGTATTTATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAA-AGTTTTATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATATAA-CAACAAAACC----ATAAATTCACA-CACCCACAT-CACAC-ACT---T-CGCGCACGCAG-C-----------------------------ACACAGCTACCTCGCACACCAAACAAAACTTTGTGGAAAAGCATG-AAATAAC--A---TC-TTTTT-ACAGTATTTAAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaTCAG-A-TTTGATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAAAA-CAACAAAGAC----ATAAACTCACATCA-CCACAC-TGCAC-ACT---T-TATGCATACA------TGA-TCA--------------CA-GCAAACACCTCCCTCGCACGCCACACAATACT--------AAGCATG-ATATAAT--A---TTCTTTTT-GCTGTATTTATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 11111111 77777777777777777777777777 22222222222222 111111111 11111 1 222222222 111 44444444444444444444444444 1111 11 2222222 22222 88888888888888888888888888 444444444444
lowQualScore : 77 33 33 2 22222222 33 2 2 444 2 6666 3 1 2 555 2 99999999999999999999999999 5 3 6666 0 0 44 3 555 44 77777777777777 44 444444444 3 0 1 00000 2 1 0 4 0 888 111111111 1 88 1 99 6 666 88 1 77 44444444444444444444444444 1 5 6666 2 1 1 666 11 3 1 11 7777777 0 55555 666 88888888888888888888888888 0 1 1 1 1 888888888888 1 1 1 1
lowQualScore : .. .. .. . ........ .. . . ... . .... . . . ... . .......................... . . .... . . .. . ... .. .............. .. ......... . . . ..... . . . . . ... ......... . .. . .. . ... .. . .. .......................... . . .... . . . ... .. . . .. ....... . ..... ... .......................... . . . . . ............ . . . .
lowQualScore : 33 99 99 7 33333333 77 5 7 777 9 1111 3 2 9 000 9 33333333333333333333333333 4 1 5555 5 8 22 1 444 22 99999999999999 22 555555555 6 4 0 00000 6 1 1 8 8 888 000000000 0 00 4 22 7 888 33 0 11 77777777777777777777777777 0 7 3333 5 7 0 666 88 2 2 55 0000000 8 00000 222 77777777777777777777777777 7 0 0 0 0 000000000000 0 0 0 0
consensus : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACA--TGC-TCA-A---CA----------GCACACANCTCCCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGT--TCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACA--TGC-TCACA-ACCA----------GCACACANCTCCCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGT--TC--GACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
gi|1 : GTCAAATTTTT--TTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATAT-AACAACAAAACC----ATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACAGCTACCTCACACACCACACACTTCACGCACACAGCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAACAT--G-TTA---TAAC--A---T--T-------TATT-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAAT-CACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATG-AATT-ATGACAACGGGTAAGC--GACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATAT-AACAACAAAGCC----ATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCACACA--TGC-TCA-----CA----------GCACACAGCTCCATTGCACACCCCA-CAGTACT----TTTTGGAAAAGCAT--G-ATA---TAAC--A--------------TTTT-ACAGCAT
gi|11 : TCAAGATTTT--ATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---AC----ATGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACA-CGCAC-A-T---A-CACGTACAAG--CGC-CCACA-gacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaAATTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAAT-AACAACAAAGCC----A-AAACACACA-CACACACACAG-ACGAGT---G-CGCGCACACA--GAC-GCGT----------------GCGCACA-------CGCTGACCAAATTAATAATAAAATTG----AAAGCATTAA-ATAGTTTGAT--A---T--TTCGTACCTTTT-TCAGTATTCCATCATATGATAAATA-GGCATCATTTTATcacatttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaagtcAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG-------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATAT-AACAGCAAAGTC----ATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCATACT--TAA-TTA-----CA----------GCAAATATCTCCCTCACATAGCACG-CAATACT----TT----------------ATA-------------------------TTT-A------------------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCACACA--TGC-TCACA---------------GCATACACCTCCCTCGCACACCATA-CAATACT----TTGCGGAAAACCAT--G-ATA---TAACCTA---TG-T-------TTTT-ACAGTATTT-----------------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGTG-------TAATTTAAAAATT-----TAAAATATGCAACGTATGTG--TGATGACAAATGGT--TCTCAACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAATATTTT--ATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATAT-AACAACAAAGCA----ATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCACACtaa
gi|18 : GTCAAAATTTT--ATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATAT-AACAACAAAGCC----ATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCACc
gi|2 : tcaaTATTATACCTA-TTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA--------------A--GGT--TCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTT--ATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAA-AACAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTCCCTCGTACGCCACA-CACTACT----GTGTGGAAAAGCAT--G-AAA---TAAC--A---T--aa
gi|22 : GTCAAAATTTT--ATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTT-GTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATAT-AACAACAAAGCC----ATAAACTCACA-C--------CGCAT-ACT---T-CACTCACGCA--TGC-----G-GTCA----------ATACACATCTCACTCGTACACCACA-CACTACT----TTGTGAAAAA-CAT--GTATA---AAAT--AC--T--T-------TTTT-TCAGTATTT---------ATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCACGATTTT--ATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAATAAAGCC----ATAAACTCACA-CACCCACCGCGCAC-ATT---T-CACGCACACA--TA---CAGA-AC------------GCACGC----CCCTCAAACACCACA-TAAAACG----TTATAAGTAAGCAT--G-ATA---TAAC--ACTTT--T-------TTTT-TCAGTATTT---------GTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACC------------AATTGAC------AGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAAAATTTT--ATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATAT-AACAACAAAGCCCGGCATAAACTCACG-CAGCCACACCACAC-ACT---T-CACACACACA---------------------------------GCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTTCACGGTATTT---------ATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTTTTGT-------TT-----------T-CACAGAAAGGT--C------TGATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGCCGCAC-ACT---C-CACGCACCCA--TGC-T---A-AC-A----------GCACACCCCTCCCTCGCAAACCACA-CCCTACT----TTGTGGA------T--G-ATA---TAAC--ACACT--T-------TTTT-TCAGTATTT---------ATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAAT-GACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAGAA--GTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : CCTCGCACACCACA-CACTCCT----TTGTGGAAAAGCAT--G-ATA---AACC--A---T--C-------TTTC-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAAAGTTTT--ATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATAT-AACAACAAAACC----ATAAATTCACA-CACCCACATCACAC-ACT---T-CGCGCACG----------------CA----------GCACACAGCTACCTCGCACACCAAA-CAAAACT----TTGTGGAAAAGCAT--G-AAA---TAAC--A---TC-T-------TTTT-ACAGTATTT---------AAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaAGATTTG--ATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAA-AACAACAAAGAC----ATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCATACA--TGA-TCA-----CA----------GCAAACACCTCCCTCGCACGCCACA-CAATACT------------AAGCAT--G-ATA---TAAT--A---TTCT-------TTTT-GCTGTATTT---------ATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 11111111 3333333333333333333333333333333 22222222222222 111111111 11111 1 222222222 111 44444444444444444444444444 1111 11 2222222 22222 77777777777777777 444444444444
lowQualScore : 77 33 33 2 22222222 33 2 2 444 2 6666 3 1 2 555 2 2222222222222222222222222222222 1 4 3 6666 0 0 44 3 555 44 77777777777777 44 444444444 3 0 1 00000 2 1 0 4 0 888 111111111 1 88 1 99 6 666 88 1 77 44444444444444444444444444 1 5 6666 2 1 1 666 11 3 1 11 7777777 0 55555 666 33333333333333333 0 1 1 1 1 888888888888 1 1 1 1
lowQualScore : .. .. .. . ........ .. . . ... . .... . . . ... . ............................... . . . .... . . .. . ... .. .............. .. ......... . . . ..... . . . . . ... ......... . .. . .. . ... .. . .. .......................... . . .... . . . ... .. . . .. ....... . ..... ... ................. . . . . . ............ . . . .
lowQualScore : 33 99 99 7 33333333 77 5 7 777 9 1111 3 2 9 000 9 6666666666666666666666666666666 2 0 1 5555 5 8 22 1 444 22 99999999999999 22 555555555 6 4 0 00000 6 1 1 8 8 888 000000000 0 00 4 22 7 888 33 0 11 77777777777777777777777777 0 7 3333 5 7 0 666 88 2 2 55 0000000 8 00000 222 77777777777777777 7 0 0 0 0 000000000000 0 0 0 0
consensus : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCA------------------CACATGC--TC-ACAGCACACACCTCCCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCA------------------CACATGC--TCAACAGCACACANCTCCCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
gi|1 : GTCAAATTTTT--TTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATAT-AACAACAAAACC----ATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACAGCTACCTCACACACCACACAC--TTCAC-GCACACAGCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAACAT--G-TTA---TAAC--A---T--T-------TATT-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAAT-CACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATG-AATT-ATGACAACGGGTAAGCGACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATAT-AACAACAAAGCC----ATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCA------------------CACATGC--TC-ACAGCACACAGCTCCATTGCACACCCCA-CAGTACT----TTTTGGAAAAGCAT--G-ATA---TAAC--A--------------TTTT-ACAGCAT
gi|11 : TCAAGATTTT--ATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---AC----ATGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACA-CGCAC-A-T---A-CACGTA------------------CAAGCGC--CCA----CACACATTTgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaAATTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAAT-AACAACAAAGCC----A-AAACACACA-CACACACACAG-ACGAGT---G-CGCGCA------------------CACAGAC--GCG--TGCGCACA-------CGCTGACCAAATTAATAATAAAATTG----AAAGCATTAA-ATAGTTTGAT--A---T--TTCGTACCTTTT-TCAGTATTCCATCATATGATAAATA-GGCATCATTTTATatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaagtcAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG-------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATAT-AACAGCAAAGTC----ATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCA------------------TACTTAA--TT-ACAGCAAATATCTCCCTCACATAGCACG-CAATACT----TT----------------ATA-------------------------TTT-A------------------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCA------------------CACATGC--TCA-CAGCATACACCTCCCTCGCACACCATA-CAATACT----TTGCGGAAAACCAT--G-ATA---TAACCTA---TG-T-------TTTT-ACAGTATTT-----------------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGTG-------TAATTTAAAAATT-----TAAAATATGCAACGTATGTG--TGATGACAAATGGTTCTCAACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAATATTTT--ATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATAT-AACAACAAAGCA----ATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCA------------------CACtaa
gi|18 : GTCAAAATTTT--ATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATAT-AACAACAAAGCC----ATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCA------------------Cc
gi|2 : tcaaTATTATACCTA-TTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA--------------A--GGTTCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTT--ATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAA-AACAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTCCCTCGTACGCCACA-CACTACT----GTGTGGAAAAGCAT--G-AAA---TAAC--A---T--aa
gi|22 : GTCAAAATTTT--ATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTT-GTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATAT-AACAACAAAGCC----ATAAACTCACA-C--------CGCAT-ACT---T-CACTCA------------------CGCATGCGGTCAATA---CACATCTCACTCGTACACCACA-CACTACT----TTGTGAAAAA-CAT--GTATA---AAAT--AC--T--T-------TTTT-TCAGTATTT---------ATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCACGATTTT--ATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAATAAAGCC----ATAAACTCACA-CACCCACCGCGCAC-ATT---T-CACGCA------------------CACAT-------ACAGAACGCACGCCCCTCAAACACCACA-TAAAACG----TTATAAGTAAGCAT--G-ATA---TAAC--ACTTT--T-------TTTT-TCAGTATTT---------GTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACC------------AATTGAC------AGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAAAATTTT--ATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATAT-AACAACAAAGCCCGGCATAAACTCACG-CAGCCACACCACAC-ACT---T-CACACA------------------CACA------------------GCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTTCACGGTATTT---------ATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTTTTGT-------TT-----------T-CACAGAAAGGT--C------TGATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGCCGCAC-ACT---C-CACGCA------------------CCCATGC--T-AACAGCACACCCCTCCCTCGCAAACCACA-CCCTACT----TTGTGGA------T--G-ATA---TAAC--ACACT--T-------TTTT-TCAGTATTT---------ATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAAT-GACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAGAA--GTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : CCTCGCACACCACA-CACTCCT----TTGTGGAAAAGCAT--G-ATA---AACC--A---T--C-------TTTC-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAAAGTTTT--ATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATAT-AACAACAAAACC----ATAAATTCACA-CACCCACATCACAC-ACT---T-CGCGCA------------------C-----------GCAGCACACAGCTACCTCGCACACCAAA-CAAAACT----TTGTGGAAAAGCAT--G-AAA---TAAC--A---TC-T-------TTTT-ACAGTATTT---------AAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaAGATTTG--ATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAA-AACAACAAAGAC----ATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCA------------------TACATGA--TC-ACAGCAAACACCTCCCTCGCACGCCACA-CAATACT------------AAGCAT--G-ATA---TAAT--A---TTCT-------TTTT-GCTGTATTT---------ATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 11111111 11111111111 1111111111111 22222222222222 111111111 11111 1 222222222 111 44444444444444444444444444 1111 11 2222222 22222 77777777777777777 444444444444
lowQualScore : 77 33 33 2 22222222 33 2 2 444 2 6666 3 1 2 555 2 33333333333 1 6666666666666 3 6666 0 0 44 3 555 44 77777777777777 44 444444444 3 0 1 00000 2 1 0 4 0 888 111111111 1 88 1 99 6 666 88 1 77 44444444444444444444444444 1 5 6666 2 1 1 666 11 3 1 11 7777777 0 55555 666 33333333333333333 0 1 1 1 1 888888888888 1 1 1 1
lowQualScore : .. .. .. . ........ .. . . ... . .... . . . ... . ........... . ............. . .... . . .. . ... .. .............. .. ......... . . . ..... . . . . . ... ......... . .. . .. . ... .. . .. .......................... . . .... . . . ... .. . . .. ....... . ..... ... ................. . . . . . ............ . . . .
lowQualScore : 33 99 99 7 33333333 77 5 7 777 9 1111 3 2 9 000 9 22222222222 0 9999999999999 1 5555 5 8 22 1 444 22 99999999999999 22 555555555 6 4 0 00000 6 1 1 8 8 888 000000000 0 00 4 22 7 888 33 0 11 77777777777777777777777777 0 7 3333 5 7 0 666 88 2 2 55 0000000 8 00000 222 77777777777777777 7 0 0 0 0 000000000000 0 0 0 0
consensus : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
gi|1 : GTCAAATTTTT--TTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATAT-AACAACAAAACC----ATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACA-GCTACCTCACACACCACACACTTCACGCACACAGCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAACAT--G-TTA---TAAC--A---T--T-------TATT-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAAT-CACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATG-AATT-ATGACAACGGGTAAGCGACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATAT-AACAACAAAGCC----ATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCACACATGCT------CACAGCACACAGCTC-------------CATTGCACACCCCA-CAGTACT----TTTTGGAAAAGCAT--G-ATA---TAAC--A--------------TTTT-ACAGCAT
gi|11 : TCAAGATTTT--ATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---AC----ATGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACA-CGCAC-A-T---A-CACGTACAAGCGCC------CACA-CACAgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaAATTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAAT-AACAACAAAGCC----A-AAACACACA-CACACACACAG-ACGAGT---G-CGCGCACACAGACG------CGT-GCGCACA--------------------CGCTGACCAAATTAATAATAAAATTG----AAAGCATTAA-ATAGTTTGAT--A---T--TTCGTACCTTTT-TCAGTATTCCATCATATGATAAATA-GGCATCATTTTATtttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaagtcAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG-------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATAT-AACAGCAAAGTC----ATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCATACTTAAT------TACAGCAAATATCTC-------------CCTCACATAGCACG-CAATACT----TT----------------ATA-------------------------TTT-A------------------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCACACATGCT------CACAGCATACACCTC-------------CCTCGCACACCATA-CAATACT----TTGCGGAAAACCAT--G-ATA---TAACCTA---TG-T-------TTTT-ACAGTATTT-----------------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGTG-------TAATTTAAAAATT-----TAAAATATGCAACGTATGTG--TGATGACAAATGGTTCTCAACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAATATTTT--ATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATAT-AACAACAAAGCA----ATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCACACtaa
gi|18 : GTCAAAATTTT--ATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATAT-AACAACAAAGCC----ATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCACc
gi|2 : tcaaTATTATACCTA-TTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA--------------A--GGTTCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTT--ATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAA-AACAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTC-------------CCTCGTACGCCACA-CACTACT----GTGTGGAAAAGCAT--G-AAA---TAAC--A---T--aa
gi|22 : GTCAAAATTTT--ATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTT-GTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATAT-AACAACAAAGCC----ATAAACTCACA-C--------CGCAT-ACT---T-CACTCACGCATGCG------GTCAATACACATCTC-------------ACTCGTACACCACA-CACTACT----TTGTGAAAAA-CAT--GTATA---AAAT--AC--T--T-------TTTT-TCAGTATTT---------ATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCACGATTTT--ATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAATAAAGCC----ATAAACTCACA-CACCCACCGCGCAC-ATT---T-CACGCACACAT----------ACAGAACGCACGCC-------------CCTCAAACACCACA-TAAAACG----TTATAAGTAAGCAT--G-ATA---TAAC--ACTTT--T-------TTTT-TCAGTATTT---------GTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACC------------AATTGAC------AGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAAAATTTT--ATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATAT-AACAACAAAGCCCGGCATAAACTCACG-CAGCCACACCACAC-ACT---T-CACACACACA-GCT----------------ACCTC-----------------GCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTTCACGGTATTT---------ATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTTTTGT-------TT-----------T-CACAGAAAGGT--C------TGATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGCCGCAC-ACT---C-CACGCACCCATGCT------AACAGCACACCCCTC-------------CCTCGCAAACCACA-CCCTACT----TTGTGGA------T--G-ATA---TAAC--ACACT--T-------TTTT-TCAGTATTT---------ATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAAT-GACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAGAA--GTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : -------------CCTCGCACACCACA-CACTCCT----TTGTGGAAAAGCAT--G-ATA---AACC--A---T--C-------TTTC-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAAAGTTTT--ATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATAT-AACAACAAAACC----ATAAATTCACA-CACCCACATCACAC-ACT---T-CGCGCA--------------CGCAGCACACAGCTA-------------CCTCGCACACCAAA-CAAAACT----TTGTGGAAAAGCAT--G-AAA---TAAC--A---TC-T-------TTTT-ACAGTATTT---------AAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaAGATTTG--ATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAA-AACAACAAAGAC----ATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCATACATGAT------CACAGCAAACACCTC-------------CCTCGCACGCCACA-CAATACT------------AAGCAT--G-ATA---TAAT--A---TTCT-------TTTT-GCTGTATTT---------ATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 11111111 11111111111 1111111111111 22222222222222 111111111 11111 1 222222222 111 44444444444444444444444444 1111 11 2222222 22222 77777777777777777 444444444444
lowQualScore : 77 33 33 2 22222222 33 2 2 444 2 6666 3 1 2 555 2 33333333333 1 6666666666666 3 6666 0 0 44 3 555 44 77777777777777 44 444444444 3 0 1 00000 2 1 0 4 0 888 111111111 1 88 1 99 6 666 88 1 77 44444444444444444444444444 1 5 6666 2 1 1 666 11 3 1 11 7777777 0 55555 666 33333333333333333 0 1 1 1 1 888888888888 1 1 1 1
lowQualScore : .. .. .. . ........ .. . . ... . .... . . . ... . ........... . ............. . .... . . .. . ... .. .............. .. ......... . . . ..... . . . . . ... ......... . .. . .. . ... .. . .. .......................... . . .... . . . ... .. . . .. ....... . ..... ... ................. . . . . . ............ . . . .
lowQualScore : 33 99 99 7 33333333 77 5 7 777 9 1111 3 2 9 000 9 22222222222 0 9999999999999 1 5555 5 8 22 1 444 22 99999999999999 22 555555555 6 4 0 00000 6 1 1 8 8 888 000000000 0 00 4 22 7 888 33 0 11 77777777777777777777777777 0 7 3333 5 7 0 666 88 2 2 55 0000000 8 00000 222 77777777777777777 7 0 0 0 0 000000000000 0 0 0 0
consensus : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
gi|1 : GTCAAATTTTT--TTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATAT-AACAACAAAACC----ATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACA-GCTACCTCACACACCACACACTTCACGCACACAGCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAACAT--G-TTA---TAAC--A---T--T-------TATT-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAAT-CACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATG-AATT-ATGACAACGGGTAAGCGACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATAT-AACAACAAAGCC----ATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCACACATGCT------CACAGCACACAGCTC-------------CATTGCACACCCCA-CAGTACT----TTTTGGAAAAGCAT--G-ATA---TAAC--A--------------TTTT-ACAGCAT
gi|11 : TCAAGATTTT--ATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---AC----ATGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACA-CGCAC-A-T---A-CACGTACAAGCGCC------CACA-CACAgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaAATTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAAT-AACAACAAAGCC----A-AAACACACA-CACACACACAG-ACGAGT---G-CGCGCACACAGACG------CGT-GCGCACA--------------------CGCTGACCAAATTAATAATAAAATTG----AAAGCATTAA-ATAGTTTGAT--A---T--TTCGTACCTTTT-TCAGTATTCCATCATATGATAAATA-GGCATCATTTTATtttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaagtcAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG-------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATAT-AACAGCAAAGTC----ATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCATACTTAAT------TACAGCAAATATCTC-------------CCTCACATAGCACG-CAATACT----TT----------------ATA-------------------------TTT-A------------------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCACACATGCT------CACAGCATACACCTC-------------CCTCGCACACCATA-CAATACT----TTGCGGAAAACCAT--G-ATA---TAACCTA---TG-T-------TTTT-ACAGTATTT-----------------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGTG-------TAATTTAAAAATT-----TAAAATATGCAACGTATGTG--TGATGACAAATGGTTCTCAACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAATATTTT--ATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATAT-AACAACAAAGCA----ATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCACACtaa
gi|18 : GTCAAAATTTT--ATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATAT-AACAACAAAGCC----ATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCACc
gi|2 : tcaaTATTATACCTA-TTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA--------------A--GGTTCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTT--ATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAA-AACAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTC-------------CCTCGTACGCCACA-CACTACT----GTGTGGAAAAGCAT--G-AAA---TAAC--A---T--aa
gi|22 : GTCAAAATTTT--ATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTT-GTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATAT-AACAACAAAGCC----ATAAACTCACA-C--------CGCAT-ACT---T-CACTCACGCATGCG------GTCAATACACATCTC-------------ACTCGTACACCACA-CACTACT----TTGTGAAAAA-CAT--GTATA---AAAT--AC--T--T-------TTTT-TCAGTATTT---------ATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-------------GTTCA-------AGATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCACGATTTT--ATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAATAAAGCC----ATAAACTCACA-CACCCACCGCGCAC-ATT---T-CACGCACACAT----------ACAGAACGCACGCC-------------CCTCAAACACCACA-TAAAACG----TTATAAGTAAGCAT--G-ATA---TAAC--ACTTT--T-------TTTT-TCAGTATTT---------GTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACC------------AATTGAC------AGATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAAAATTTT--ATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATAT-AACAACAAAGCCCGGCATAAACTCACG-CAGCCACACCACAC-ACT---T-CACACACACA-GCT----------------ACCTC-----------------GCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTTCACGGTATTT---------ATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTTTTGT-------TT-----------T-CACAGAAAGGT--C------TGATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGCCGCAC-ACT---C-CACGCACCCATGCT------AACAGCACACCCCTC-------------CCTCGCAAACCACA-CCCTACT----TTGTGGA------T--G-ATA---TAAC--ACACT--T-------TTTT-TCAGTATTT---------ATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAAT-GACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAGAA--GTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : -------------CCTCGCACACCACA-CACTCCT----TTGTGGAAAAGCAT--G-ATA---AACC--A---T--C-------TTTC-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAAAGTTTT--ATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATAT-AACAACAAAACC----ATAAATTCACA-CACCCACATCACAC-ACT---T-CGCGCA--------------CGCAGCACACAGCTA-------------CCTCGCACACCAAA-CAAAACT----TTGTGGAAAAGCAT--G-AAA---TAAC--A---TC-T-------TTTT-ACAGTATTT---------AAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaAGATTTG--ATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAA-AACAACAAAGAC----ATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCATACATGAT------CACAGCAAACACCTC-------------CCTCGCACGCCACA-CAATACT------------AAGCAT--G-ATA---TAAT--A---TTCT-------TTTT-GCTGTATTT---------ATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
blockSeqs : TA AT AT T AATCTATT TT G G AAC A CGGC T C G AAC A TGCTC G . T AAAA TA T GTT CT TTTCGTACC CA CATCATATG C C ACACA T A T A AAT GTTTT A AA C TC C TT T G AT TATTCACCGGTAGTTCA G C CTA T C T ACG AA T T AC GACATCC TAAAA GTA TGTGTGATGACAAAT G C G A . A G A T
blockSeqs : T . . . A . . . . . . . C . . . CGCCC T . . . . . . . CTTTT A . . C . A C T G . TACAA C G C . . TC C A AG TAATGACCGGAAGTTCA T . TAA G T C TTA AT G A TT G . GCT A
blockSeqs : . . . . . . . . . . . . C . . . GACGC C . . . . . . . CACTT T . . C . A G T G . TAA A A T . . A T G AT TCACAGAAAGGTCT G . TCA G T C ACG AT G T . . . .
blockSeqs : . . . . . . . . . . . . C . . . TAATT C . . . . . . . TTCT A . . T . T C T G . A G G T . . T T T GT ACCGGAAGTCCA A . TA G T C . . .
blockSeqs : . . . . . . . . . . . . G . . . TGCTC T . . . . . . . TGT A . . A . T C T . . A T A T . . . . G G AATTGACA T . T . . .
blockSeqs : . . . . . . . . . . . . T . . . TGCGG C . . . . . . . CTT T . . C . G C T . . A T . T . GTTCAA G . A
blockSeqs : . . . . . . . . . . . . G . . . TGCTA C . . . . . . . TCT T . . A . A G . . . A
blockSeqs : . . . . . . . . . . . . C . . . TGATC C . . . . . . . TT T . . A . . . .
blockSeqs : . . . . . . . . . . . . C . . . GCT G . . . . . . . TC A . . T .
blockSeqs : . . . . . . . . . . . . T . . . T C . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . C . . . C . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : TGCTC****** ************* TT************ T** T* TATTCACCGGAAGTTCA*********
originalCons : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTA-T-CACCGGAAGTTCAC------AGATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
finalCons : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCTC------ACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--ATT------------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-AT--AT-TTGTGTAGGGCGATTATTATACCTATTCACCGGAAGTTCA---------GATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG
Alignments
lowQualScore : 11111111 11111111111 1111111111111 22222222222222 111111111 11111 1 222222222 111 111 22222222 1111 11 2222222 22222 77777777777777777 444444444444
lowQualScore : 77 33 33 2 22222222 33 2 2 444 2 6666 3 1 2 555 2 33333333333 1 6666666666666 3 6666 0 0 44 3 555 44 77777777777777 44 444444444 3 0 1 00000 2 1 0 4 0 888 111111111 1 88 1 99 6 666 88 5 1 1 000 4 11 1 33 00000000 1 5 6666 1 2 1 1 666 11 3 1 11 7777777 0 55555 666 33333333333333333 0 1 1 1 1 888888888888 1 1 1 1
lowQualScore : .. .. .. . ........ .. . . ... . .... . . . ... . ........... . ............. . .... . . .. . ... .. .............. .. ......... . . . ..... . . . . . ... ......... . .. . .. . ... .. . . . ... . .. . .. ........ . . .... . . . . ... .. . . .. ....... . ..... ... ................. . . . . . ............ . . . .
lowQualScore : 33 99 99 7 33333333 77 5 7 777 9 1111 3 2 9 000 9 22222222222 0 9999999999999 1 5555 5 8 22 1 444 22 99999999999999 22 555555555 6 4 0 00000 6 1 1 8 8 888 000000000 0 00 4 22 7 888 33 2 4 4 444 3 44 4 44 77777777 0 7 3333 7 5 7 0 666 88 2 2 55 0000000 8 00000 222 77777777777777777 7 0 0 0 0 000000000000 0 0 0 0
consensus : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTGTTATACCTATTCACCGGAAGTTCA--------GATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
Reference ( family-2273 ) : GTCAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAACAAAGCC----ATAAACTCACA-CACCCACACCGCAC-ACT---T-CACGCACACATGCT------CACAGCACACACCTC-------------CCTCGCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTT-ACAGTATTT---------ATAAATA-GACCTCATTATATNAACAT-----TTCCATAAAGAAAATCTAATTCATANCTTACAATCATTATTGAAAAAAGTACG---AC----A----AATNTA-TTGTGACGACGACAATAATCA--ATA-A-T-A-TTTGTGTAGGGCGATTATTATACCTATTCACCGGAAGTTCA--------GATCAANT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGAGAAAAGTGTCACATAATAATCGGATTTNCGAAGTTCTTATCAGTATTGTTTGCTAGCAGTGTTGNTAAGAGTGACATCCGTAATT-----ATTGCTGCTGAAATGTACAACGCATG-G--T-ATGACAA--GGTTCTCGACTGTTATTTACTCGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTNTTATTCAGNGCATTGCNANAAGTAACTGATTATTGAAAATTTAATCTACGTGAGATGATTGTACAGCTAAATATTAANTGCAGCATATTANTAATAGATGACACTTTAACCTACGAATAGTATGAGTTACNTTGNGACAA
gi|1 : GTCAAATTTTT--TTTAGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTGTCATGA-CAGT-ACA---ATAATAAATAT-AACAACAAAACC----ATAAACTCACA-CACCCACACCATAC-ACT---T-CACGCACACA-GCTACCTCACACACCACACACTTCACGCACACAGCTACCTCGCACACCACA-CAATACT----TTGTGGAAAAACAT--G-TTA---TAAC--A---T--T-------TATT-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCTATAAAGAAAATCAAATTCATATCTTACAATCAATATTGAAAAAAGTACG---AC----A----AATTTA-TTATGACGATGAGAATAATCA--ATA-A-T-AATTTTTGTAGGGCGATTATTATACCTAATCACCGGAAGTCCACCGGTCCAGATCCATT-AGATGCTTGCAGAATTCTCACATGTT-TAATTTTTGGGGGAAAAGTGTCACATAATAATCGGATTTTTAAAGTTTTTATCAATGTTGTTTGCCAGCAGTGGTGGTAAGAGTAACATTCGTAATT-----ATTGCTGCTGAAATATACAACGCATG-AATT-ATGACAACGGGTAAGCGACTGTTATTTACTTGTTTACAGTCGAAGAATCGTCTGACATGCCATGATTTTTATTCAGGGCATTGCCATAAGTAACTGATTATTGAAAATTTAATCTATGTGAGATGATTGTACAGCTAAATATTAACTGCAGCATATTATTAATAAATGACACTTTAATCTACGAATAGTATGAGTTACCTTGGGACAA
gi|10 : CAAAATTTT--ATTAGCATAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGA-TAGT-ACA---CAAATAAATAT-AACAACAAAGCC----ATAATCTTACA-CACTCACACCACAC-ACT---T-AACGCACACATGCT------CACAGCACACAGCTC-------------CATTGCACACCCCA-CAGTACT----TTTTGGAAAAGCAT--G-ATA---TAAC--A--------------TTTT-ACAGCAT
gi|11 : TCAAGATTTT--ATCAGCATTAACATAATTATAATTGTGTATC-GC--------CA--TCTATACTGTTATGATGA-TG---AC----ATGACAAATACAAACAACAAAGCC----ATAA---CAAA------ACA-CGCAC-A-T---A-CACGTACAAGCGCC------CACA-CACAgacattcaatcagaaaaagtccacgtgtaaataactggatattgttctaaagaatctta
gi|12 : tacaaaacagttgttgctctgttgaattatttttatcaagtcaaaAATTTTTAATTATCATAAGCATA--TGAA--TGTTCATC-GT--------CA--TTTGTA-------CATAAGCAAT-ACA---GTAACATTAAT-AACAACAAAGCC----A-AAACACACA-CACACACACAG-ACGAGT---G-CGCGCACACAGACG------CGT-GCGCACA--------------------CGCTGACCAAATTAATAATAAAATTG----AAAGCATTAA-ATAGTTTGAT--A---T--TTCGTACCTTTT-TCAGTATTCCATCATATGATAAATA-GGCATCATTTTATtttatgacgtaatgaatcatttttgcttgtactatttgtagcaataagcacacctaaccgctatgatcgacaaaattca
gi|13 : agtccaagtcAAATACG---AC----GTTTTAACATAAGTGTGACGACGACAATAGTCCTCATA-A---A-TTTGAGCAGGGCGATTG------------ACCGGAAGTCCA--------GATTAAGC-AGATGATTGCAGAAATCTCAAATGGT-T--TCTTTTAGAGAAAA-TGCCACA-AATAATTGGATTTACGAAGTTCTT---------GTTTGCTAGCAATATTGACAAGAGTGACATCCGTGAGT-----AATGTAGCTGAGATGAACA
gi|14 : aaactgTATCATGA-TAGT-ACA---ATCACAAATAT-AACAGCAAAGTC----ATTAAGTCAGA-CACCCGCACCACAC-TTT---T-CCCGCATACTTAAT------TACAGCAAATATCTC-------------CCTCACATAGCACG-CAATACT----TT----------------ATA-------------------------TTT-A------------------TAAATACGA-CTCATTATATCGACAT-----TTCCATAAAGAAAATCTAATT
gi|15 : aaacagatacgtacgtttaaaataattatctgatataactacactaCCCATACCACAT-ACT---T-CA-GCACACATGCT------CACAGCATACACCTC-------------CCTCGCACACCATA-CAATACT----TTGCGGAAAACCAT--G-ATA---TAACCTA---TG-T-------TTTT-ACAGTATTT-----------------------ATTATATCAACAT-----TTTCATAAAGAAAATCTAATTCATATTTTAAATTTGTTATTGAAA
gi|16 : tatacatgtaaagtgcaataactattaattgaagtataatTGCTTATAGAATTATCACATGGT---ATATTTAGGATAAAATTGTCACACAATAAT----------AAATGTTTAACATTATTGCTTGTAAACAGTATTGTTAAGAGTG-------TAATTTAAAAATT-----TAAAATATGCAACGTATGTG--TGATGACAAATGGTTCTCAACTGGTATTTACTCGTTTAAAGTca
gi|17 : gTCAATATTTT--ATTAGCATAAAAATA--TTTA--TCATCATCTGTA-------CA--TAAGAATGGCCTTCATCA-TAAT-GCA---ATAATAAATAT-AACAACAAAGCA----ATAAACTCACA-CACCCACAGCACAC-AAT---T-CATTCACACtaa
gi|18 : GTCAAAATTTT--ATTTGCAAAAACATA--TACA--TGTTCATC-GC--------CA--TATGTATG--------------T-ACA---ATAATAAATAT-AACAACAAAGCC----ATTACCTCACA-CACCCACATCACAC-ACTAACTATACGCACc
gi|2 : tcaaTATTATACCTATTCACCGGTAGTTCA--------AATCGATG-AGATGCTTGCAGAATTCTCACATGTTCTA--TCTTGGGTGGAAAGTGTCACATAATAATCGGATTTTTATAATTCTTATCAGTATTGTTTGCTAGCAGTGTTG---------------GTAACT-----ATTGCTGCTGAAATGTACAACGCA--------------A--GGTTCTCGGCTGTAATTTACTTGTTTAAAGTCGAAGAATCGTCTGACATGCCATGATTGTTATTCAGCGCATTGCGAAAAGTAACTGATTAT------------CTACGTAAGATGATTGTACAGCTAAATATTAAATGCAGCATATTAGTAATAGATGACACTTTAACCTATGAATAGTATGAGTTACATTGTGACAA
gi|20 : TTTT--ATTAGTATAAACATA--TACC--TGTTCATC-ACAATCTATTCA--TAAGTATTGCTTTTATGA-TAATGATAAACATAATCAACAA-AACAGCAAAGCC----Acaagataataatatgtgatttctcatctgttcatactcaaacatttctgccaactgtttttacacagtgttgtaacatgcaatttagaactttcattatggtatttagttatttacataataggaaaccacacgcacacacacatatacttttgtttataagttat
gi|21 : ACAAACCTC-------------CCTCGTACGCCACA-CACTACT----GTGTGGAAAAGCAT--G-AAA---TAAC--A---T--aa
gi|22 : GTCAAAATTTT--ATTTGCATAAACATA--TGCA--TGTTCATC-GC--------CA--TATGTATGGCTATCATGC-TAGT-ACA---ATAATacttaccaggcccagtaaatttat
gi|23 : tcaaaGCATAAACATG--TACA--TGTCCATC-AA--------CATTTACGTATGGCCACTACGA-CAGt
gi|3 : GTCAAGATTTTT-GTC--CATAAACA------CA--TGTCCATC-AC--------CA--TCAGTATGGCTATCAGAA-TGGT-ACA---TTGATAAATAT-AACAACAAAGCC----ATAAACTCACA-C--------CGCAT-ACT---T-CACTCACGCATGCG------GTCAATACACATCTC-------------ACTCGTACACCACA-CACTACT----TTGTGAAAAA-CAT--GTATA---AAAT--AC--T--T-------TTTT-TCAGTATTT---------ATAAATA-GACCTCATTATATCAACAT-----TTCCATAAAGAGTATCTAATTCATAACTTACACTAATTATTGAAAAAA-TACG---ACTACAA----AATCT--TTGTGACAACAACAATAATCA--ATA-A-A-A---AATGTAGGGTGATTAGTATACC-GTTCA----------A--------GATTAAGT-AAATGCTTACAAATTTCTCACATGTT-TAATTTTGTAAAAAAAAGTATTACATAATAATCG
gi|4 : aaTCACGATTTT--ATAAGCATGAACATA--TATA--TGATCATC-GC--------CA--TCTGCATGGCTATCATGA-TAGT-ACA---ATAATAAATAT-AACAATAAAGCC----ATAAACTCACA-CACCCACCGCGCAC-ATT---T-CACGCACACAT----------ACAGAACGCACGCC-------------CCTCAAACACCACA-TAAAACG----TTATAAGTAAGCAT--G-ATA---TAAC--ACTTT--T-------TTTT-TCAGTATTT---------GTAAATA-CAGCGCATTATATTAACAC-----TACCATAAATAAAATGCAATTCATAACTAAGAATCATTATTGAAATAA-TACGAATAC----A----AATATG-TTGTGACGATAACGATAACTA--ATA-ATT-A-CTTGTATAGGGCGACTATTATACCAATT-----GA----CA--------GATTAGAT-AGATGCTTGTAGAATTTTCACATGTT-TCATTGTTG
gi|5 : attGTTAAAATTTT--ATAAGCGTAAACATA--TATA--TGTCCATC-AT--------CA--TATGTATAGCTATCATAA-TAGT-ATA---ACAATAGATAT-AACAACAAAGCCCGGCATAAACTCACG-CAGCCACACCACAC-ACT---T-CACACACACA-GCT----------------ACCTC-----------------GCACACCACA-CAATACT----TTGTGGAAAAGCAT--G-ATA---TAAC--A---T--T-------TTTTCACGGTATTT---------ATAAATA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTTATTCATATCTTACAATCATTATTGACAAAAGTACA---AC----A----AATGTA-TTATGACGATGATAATAATCA--ATA-A-TCA-TTT-----------TTGTT-------TTCACAGAAAGGTCT--------GATCCTTTCAGATGCTTGCAAAATTATCACATGTT-
gi|6 : aaCGCCGCAC-ACT---C-CACGCACCCATGCT------AACAGCACACCCCTC-------------CCTCGCAAACCACA-CCCTACT----TTGTGGA------T--G-ATA---TAAC--ACACT--T-------TTTT-TCAGTATTT---------ATAAATA-TACCTCATTATATCAACAT-----TTCCATAAAGAAAATCTAAT---------------A--ATTGAAATAA-TACG---ACTA--A----AATTTG-TTGTGACGATAACAATAATCA--ATACA-T-A-TGTGTATAGTGTGAGTGTTATACCTAATGACCGGAAGTTCA--------GATCAAGT-AGATGCTTACAGAATTCTCACATGCT-TA--TTTCGGGAG--AAGTGTCGCATGATAATCGGATTTACGAAGTTCTTATTAGTAct
gi|7 : TCATC-GC--------CT--TATGTATGGCTATCACGA-TAGT-ACA---ATAATAAATAT----AACAAAGCC----gc
gi|7 : -------------CCTCGCACACCACA-CACTCCT----TTGTGGAAAAGCAT--G-ATA---AACC--A---T--C-------TTTC-ACAGTATTT---------ATAAGTA-GACTTCATTAAATAAACAT-----TTCCATAAAGAAAATCTAAATCATATCTTACAATCATTATTGACAAAAGTACG---AC----A----AATTTA-TTATGACGATGATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatacctcgcacaccacacactcctttgtggaaaagcatgataaaccatctttcacagtatttataagtagacttcattaaataaacatttccataaagaaaatctaaatcatatcttacaatcattattgacaaaagtacgacaaatttattatgacgatgataat
gi|8 : tcatcgccttatgtatggctatcacgatagtacaataataaatataacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataataGTCAAAGTTTT--ATTAGCATAAACATA--TACA--TGCCCATT-GC--------CA--TATG----GCTACCATGA-TAGT-ACA---CCAATAAATAT-AACAACAAAACC----ATAAATTCACA-CACCCACATCACAC-ACT---T-CGCGCA--------------CGCAGCACACAGCTA-------------CCTCGCACACCAAA-CAAAACT----TTGTGGAAAAGCAT--G-AAA---TAAC--A---TC-T-------TTTT-ACAGTATTT---------AAAATTA-GACTTCATTATATAAACACACACAATCAATAAAATAAACATAGTTTGTAGAAAGCAAACA-TAAAGAAAAAGGT--G---AC----A----AA
gi|9 : tcaaAGATTTG--ATTAGCATAAACATA--TACA--TGTGCATT-GC--------CA--TCTGTATGGCTATCATGA-TAGA-ACA---ATAATATATAA-AACAACAAAGAC----ATAAACTCACATCA-CCACACTGCAC-ACT---T-TATGCATACATGAT------CACAGCAAACACCTC-------------CCTCGCACGCCACA-CAATACT------------AAGCAT--G-ATA---TAAT--A---TTCT-------TTTT-GCTGTATTT---------ATAAATA-TGCCATATTATTTTAACAT-----TTCAATAAAGAATATCAAATTTATAACTTAGAATATTTATTGAAAggcgaagaacaatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTTATTGGCATAAATTTTGTTTACATGGAACATGATAGTAGCACAAAGTATGCTAAATATGACAGGAGACAGTAGTCTATATACAACTGGTACCATCAGCACCTAATGCACACATGT
Unaligned ( gi|24 ): TTATAAAAGAGATGTTGTTGTTAGGCGTTAAGGACCTTTGTCAAGTCAG