lowQualScore                  :                                                                                                 1        
lowQualScore                  :     2                                     0                      0 2    66666                   4        
lowQualScore                  :     .                                     .                      . .    .....                   .        
lowQualScore                  :     7                                     2                      9 6    77777                   7        
consensus                     :  GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
Reference ( gi|6 )            :  GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCAAACATTTTCTTT
gi|1                          :  GTT-TTTTCTTGACCAGGAAAAGGTGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|2                          : tGTT-ATTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTGCGTGCAATT-----GGCATATTCATTGTCAAACTTTTTCTTTg
gi|7                          :  GTT-TTTTCTAGACCAGGAAAAGGGGCAGGCAGCAAGAAAAAGGGGCAGGGAACAAAGTTTGCGCGCGATT-----GGCATATCCATTGTCAGACTTTTTCTg
gi|4                          :  GTTATTTTCTAGACCAGGAAAAAGGGCAGGAAGCAAGAAAAAGGGGCAGGGAGCAATTATTACGCGAAATTCAAAAAACATATTTATTG-CAAAAATTg
gi|14                         :  GTT-TTTTCTAGATCAGGAAAAAGAGGTTGGAGAAATAAAA------TGGGAGAAAAGCTTGCATGTTATT-----GGAATATTAATTTGCAAA-ATTTGTTTTgt
gi|18                         :  GTT-TTTTCTAAACCAGGAAAAGGGGCAGGGAGCGAt
gi|19                         : tGTT-TTTTCTAGACCAGGCAAAGGGACAGGGAGCAA
gi|8                          :   TT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGCGCGATT-----GGCATATCCATTGTCAAACTTTTTCTTT
gi|10                         :   TT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAATAAAA-GGGGCAGGGAGCAAAGTTTGTGCGTGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|3                          :   TT-TTTTCTAGATCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTGGTGCACGATT-----GACAAATTCATTGTCAAACTTTTTCTTT
gi|9                          :  tTT-TTTTCTAGACCAGGAAAAGGGGCAAGGAGCAAGAAAAAAGGGCAGGGAGCAAAGTTTGCACCCGTCT-----GGCATATTCATTGTCAAACTTTTACTTTg
gi|5                          :   TT-TTTTTTA--CCAGGAGAAGGGGCAGGGAGCAAGAAAAAGGGACAGGGAGGAAAGTTTGTGCGTAATT-----GGCATATTCATTGTCAGATATTTTCTTT
gi|11                         : ttTT-TTTTCTAGACAAGGAAAAGGGGCAGGGAGCAAGAAAA-GGGACAGGGAGCACAATTTGCGCGCGATT-----GGCATATTCATTGTCAACCTTTTTATTg
gi|16                         :   TT-TTTTCTAGACCAGGTAAAGGTGCTGGGAGCAAGAAAAACAGGCAGGGAGCA-------------ATT-----GGCAACTTCATTGTCAAAC-TTTT
gi|17                         :   tT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGTGCAAT
gi|15                         :        TTCTAGACAAGAAAAAAGGGCAGGGAGCAAGAAAAAGGAACACGGAGTAAATCATGCACGTAATT-----GGAATATTCGTTGCCAAA
gi|13                         :         TCTAGGCCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCACAC-TTTTTTTTtttgttc
gi|12                         :         TCTAGGCCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTTTGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTTgg





Alignments
lowQualScore                  :      2                                                                   66666                            
lowQualScore                  :      .                                                                   .....                            
lowQualScore                  :      5                                                                   22222                            
consensus                     :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
Reference ( family-223 )      :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|1                          :   GTT-TTTTCTTGACCAGGAAAAGGTGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|10                         :   tTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAATAAAA-GGGGCAGGGAGCAAAGTTTGTGCGTGATT-----GGCATATTCATTGTCAAACTTTTTCTTTg
gi|11                         :    TT-TTTTCTAGACAAGGAAAAGGGGCAGGGAGCAAGAAAA-GGGACAGGGAGCACAATTTGCGCGCGATT-----GGCATATTCATTGTCAACCTTTTTATT
gi|12                         :          TCTAGGCCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTTTGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|13                         :          TCTAGGCCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCACACTTTTTTTTa
gi|14                         :   GTT-TTTTCTAGATCAGGAAAAAGAGGTTGGAGAAATAAAA------TGGGAGAAAAGCTTGCATGTTATT-----GGAATATTAATTTGCAAAATTTGTTTTTgg
gi|15                         :         TTCTAGACAAGAAAAAAGGGCAGGGAGCAAGAAAAAGGAACACGGAGTAAATCATGCACGTAATT-----GGAATATTCGTTGCCAAATTTGTTC
gi|16                         :    TT-TTTTCTAGACCAGGTAAAGGTGCTGGGAGCAAGAAAAACAGGCAGGGAGCA-------------ATT-----GGCAACTTCATTGTCAAACTTTT
gi|17                         :    tT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGTGCAAT
gi|18                         :   GTT-TTTTCTAAACCAGGAAAAGGGGCAGGGAGCGA
gi|19                         :  tGTT-TTTTCTAGACCAGGCAAAGGGACAGGGAGCAA
gi|2                          :   GTT-ATTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTGCGTGCAATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|3                          :    TT-TTTTCTAGATCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTGGTGCACGATT-----GACAAATTCATTGTCAAACTTTTTCTTTg
gi|4                          :  tGTTATTTTCTAGACCAGGAAAAAGGGCAGGAAGCAAGAAAAAGGGGCAGGGAGCAATTATTACGCGAAATTCAAAAAACATATTTATTG-CAAAg
gi|5                          :    TT-TTTTTTA--CCAGGAGAAGGGGCAGGGAGCAAGAAAAAGGGACAGGGAGGAAAGTTTGTGCGTAATT-----GGCATATTCATTGTCAGATATTTTCTTTaattgt
gi|6                          : ttGTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCAAACATTTTCTTTg
gi|7                          :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGCAGCAAGAAAAAGGGGCAGGGAACAAAGTTTGCGCGCGATT-----GGCATATCCATTGTCAGACTTTTTCT
gi|8                          :    TT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGCGCGATT-----GGCATATCCATTGTCAAACTTTTTCTTTg
gi|9                          :    TT-TTTTCTAGACCAGGAAAAGGGGCAAGGAGCAAGAAAAAAGGGCAGGGAGCAAAGTTTGCACCCGTCT-----GGCATATTCATTGTCAAACTTTTACTTT





Alignments
lowQualScore                  :      2                                                                   66666                            
lowQualScore                  :      .                                                                   .....                            
lowQualScore                  :      5                                                                   22222                            
consensus                     :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
Reference ( family-223 )      :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|1                          :   GTT-TTTTCTTGACCAGGAAAAGGTGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|10                         :   tTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAATAAAA-GGGGCAGGGAGCAAAGTTTGTGCGTGATT-----GGCATATTCATTGTCAAACTTTTTCTTTg
gi|11                         :    TT-TTTTCTAGACAAGGAAAAGGGGCAGGGAGCAAGAAAA-GGGACAGGGAGCACAATTTGCGCGCGATT-----GGCATATTCATTGTCAACCTTTTTATT
gi|12                         :          TCTAGGCCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTTTGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|13                         :          TCTAGGCCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCACACTTTTTTTTa
gi|14                         :   GTT-TTTTCTAGATCAGGAAAAAGAGGTTGGAGAAATAAAA------TGGGAGAAAAGCTTGCATGTTATT-----GGAATATTAATTTGCAAAATTTGTTTTTgg
gi|15                         :         TTCTAGACAAGAAAAAAGGGCAGGGAGCAAGAAAAAGGAACACGGAGTAAATCATGCACGTAATT-----GGAATATTCGTTGCCAAATTTGTTC
gi|16                         :    TT-TTTTCTAGACCAGGTAAAGGTGCTGGGAGCAAGAAAAACAGGCAGGGAGCA-------------ATT-----GGCAACTTCATTGTCAAACTTTT
gi|17                         :    tT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGTGCAAT
gi|18                         :   GTT-TTTTCTAAACCAGGAAAAGGGGCAGGGAGCGA
gi|19                         :  tGTT-TTTTCTAGACCAGGCAAAGGGACAGGGAGCAA
gi|2                          :   GTT-ATTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTGCGTGCAATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|3                          :    TT-TTTTCTAGATCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTGGTGCACGATT-----GACAAATTCATTGTCAAACTTTTTCTTTg
gi|4                          :  tGTTATTTTCTAGACCAGGAAAAAGGGCAGGAAGCAAGAAAAAGGGGCAGGGAGCAATTATTACGCGAAATTCAAAAAACATATTTATTG-CAAAg
gi|5                          :    TT-TTTTTTA--CCAGGAGAAGGGGCAGGGAGCAAGAAAAAGGGACAGGGAGGAAAGTTTGTGCGTAATT-----GGCATATTCATTGTCAGATATTTTCTTTaattgt
gi|6                          : ttGTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCAAACATTTTCTTTg
gi|7                          :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGCAGCAAGAAAAAGGGGCAGGGAACAAAGTTTGCGCGCGATT-----GGCATATCCATTGTCAGACTTTTTCT
gi|8                          :    TT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGCGCGATT-----GGCATATCCATTGTCAAACTTTTTCTTTg
gi|9                          :    TT-TTTTCTAGACCAGGAAAAGGGGCAAGGAGCAAGAAAAAAGGGCAGGGAGCAAAGTTTGCACCCGTCT-----GGCATATTCATTGTCAAACTTTTACTTT


blockSeqs                     :      A                                                                   CAAAA
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    
blockSeqs                     :      .                                                                   .    


blockSeqCons                  :   
originalCons                  :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
finalCons                     :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT





Alignments
lowQualScore                  :      2                                                                   66666                            
lowQualScore                  :      .                                                                   .....                            
lowQualScore                  :      5                                                                   22222                            
consensus                     :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
Reference ( family-223 )      :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGCGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|1                          :   GTT-TTTTCTTGACCAGGAAAAGGTGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|10                         :   tTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAATAAAA-GGGGCAGGGAGCAAAGTTTGTGCGTGATT-----GGCATATTCATTGTCAAACTTTTTCTTTg
gi|11                         :    TT-TTTTCTAGACAAGGAAAAGGGGCAGGGAGCAAGAAAA-GGGACAGGGAGCACAATTTGCGCGCGATT-----GGCATATTCATTGTCAACCTTTTTATT
gi|12                         :          TCTAGGCCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTTTGTGCGATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|13                         :          TCTAGGCCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCACACTTTTTTTTa
gi|14                         :   GTT-TTTTCTAGATCAGGAAAAAGAGGTTGGAGAAATAAAA------TGGGAGAAAAGCTTGCATGTTATT-----GGAATATTAATTTGCAAAATTTGTTTTTgg
gi|15                         :         TTCTAGACAAGAAAAAAGGGCAGGGAGCAAGAAAAAGGAACACGGAGTAAATCATGCACGTAATT-----GGAATATTCGTTGCCAAATTTGTTC
gi|16                         :    TT-TTTTCTAGACCAGGTAAAGGTGCTGGGAGCAAGAAAAACAGGCAGGGAGCA-------------ATT-----GGCAACTTCATTGTCAAACTTTT
gi|17                         :    tT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGTGCAAT
gi|18                         :   GTT-TTTTCTAAACCAGGAAAAGGGGCAGGGAGCGA
gi|19                         :  tGTT-TTTTCTAGACCAGGCAAAGGGACAGGGAGCAA
gi|2                          :   GTT-ATTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCTGGGAGCAAAGTTTGCGTGCAATT-----GGCATATTCATTGTCAAACTTTTTCTTT
gi|3                          :    TT-TTTTCTAGATCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTGGTGCACGATT-----GACAAATTCATTGTCAAACTTTTTCTTTg
gi|4                          :  tGTTATTTTCTAGACCAGGAAAAAGGGCAGGAAGCAAGAAAAAGGGGCAGGGAGCAATTATTACGCGAAATTCAAAAAACATATTTATTG-CAAAg
gi|5                          :    TT-TTTTTTA--CCAGGAGAAGGGGCAGGGAGCAAGAAAAAGGGACAGGGAGGAAAGTTTGTGCGTAATT-----GGCATATTCATTGTCAGATATTTTCTTTaattgt
gi|6                          : ttGTT-TTTTCTAGACCAGGAAAAGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGCGTGTGATT-----GGCATATTCATTGTCAAACATTTTCTTTg
gi|7                          :   GTT-TTTTCTAGACCAGGAAAAGGGGCAGGCAGCAAGAAAAAGGGGCAGGGAACAAAGTTTGCGCGCGATT-----GGCATATCCATTGTCAGACTTTTTCT
gi|8                          :    TT-TTTTCTAGACCAGGAAATGGGGCAGGGAGCAAGAAAAAGGGGCAGGGAGCAAAGTTTGTGCGCGATT-----GGCATATCCATTGTCAAACTTTTTCTTTg
gi|9                          :    TT-TTTTCTAGACCAGGAAAAGGGGCAAGGAGCAAGAAAAAAGGGCAGGGAGCAAAGTTTGCACCCGTCT-----GGCATATTCATTGTCAAACTTTTACTTT