lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 1111 1 222 1 1 1 3 1111 1111 111 5555555555555555555555555555555555555555555555555555555555 33 11111 1 222222
lowQualScore : 4 3 2 7 9 1 6 5 2 4444 2 7 1 3 8 111 9 6 5 1 6 1 5 4 6666 2 4 99 6 6 6 6 0 2222 5 77 8 000 0000000000000000000000000000000000000000000000000000000000 0 00 2 4 4 8 8 1 55 0 8 4 1 6 11111 3 4 4 4 7 777 55 5 66 5 2 77 666666 5 5
lowQualScore : . . . . . . . . . .... . . . . . ... . . . . . . . . .... . . .. . . . . . .... . .. . ... .......................................................... . .. . . . . . . .. . . . . . ..... . . . . . ... .. . .. . . .. ...... . .
lowQualScore : 0 2 5 0 5 7 0 0 5 2222 7 3 0 2 3 888 0 0 0 7 7 8 7 3 8888 8 0 22 7 7 7 0 3 1111 7 99 9 000 3333333333333333333333333333333333333333333333333333333333 7 99 4 0 0 0 0 5 55 8 2 4 1 0 11111 7 0 0 1 4 222 55 0 99 0 2 99 111111 2 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATNAAATAGAATATAATACGATGTCATAT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAA--GCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTG-TAGTGGTACGAAACCTCCAACAANT--CTCTCTCTGTTTCTCCCNGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAA-AAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------ACG-------------TA-------------CACGGGAACTTNACAGTTTCTGGAAGTGTTG-AT-ATT-CTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-AT--TTA-AGTA--AAGT-TAA-ATGGGATATTAGTT-TGTTAATCATTCGTGGATAGGTTGC
Reference ( gi|1 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTTTAT--GCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTG-T-GTGGTACGAAACCTCCAACAACT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAA-AAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------ACA-------------TA-------------CACGGGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATT-CTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-AT--TTA-AATA--AAGT-T-A-GTGGGATATTAGTT-TGTTAATCATTCGTGGATAGGTTGC
gi|2 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATAT-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAA--CCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTG-TAGTGTTACGAAACCTCAAACAA--------GTCTGTCTCTCTCTGTTT
gi|3 : cACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATATTATTTCCAGTTATAAAATATTGCATCTTTCTATACT--ATTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACACAAAAGGTTA-GTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACATGTATAA--G-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTG-TAGTGGTACGAAACCTCCAACAACTTACTATCTCTGTTTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|4 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATAT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACT-TCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAAGTTTAA--GCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTG-TAGTGGTACGAAACCTCCAACAAGT--CTCTCTCTGTTTCCCaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|9 : cACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATAT-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACATGTATAA--GCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTG-TAGTGATATGAAACCTCCAACAAGT--CTCTCTCTCTTTTTCCCAGCTTggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|7 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC------ATAATAA--------------AATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACATGTTTAA--GCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTT-GTGGTACGAAACCTCCAACAA
gi|5 : ACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACAC--AGATATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTG-TAGTGGCACGAAACCTCCAACAACT--CTCTCTCTGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|17 : cAAACCACCTGGTATGAAATTG-CAGCGGTAAGAAACCTCCaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|2 : aGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCT--AAGTC---ATAAAT-------------T-------------ACGTTTAGAAAATACTTA-------------CACGGG-ACTTCACAGTTTCTGGAAGTGTTG-AT-ATT-ATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-AT--TTA-AGTA--AAGT-TAA-ATGGGATAGTAGTT-TGTTAATCATTCGTGGATAGGTTGCttc
gi|4 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTC---ATAAAT-------------T-------------GCG-------------TATAGAAAATACTTGCACGGGA-CTTTACAGTTTTTGGAAGTGTTG-AT-ATT-ATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATATTT-ATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAt
gi|6 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccGGCTTCGAACA--CAAACAAGAAAA-AAA-----AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTC---ATAAATTGCTTATAGAAAAT-------------ACT-------------TA-------------CACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATT-CTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|5 : caacaccaaatgcacttgcaattaaatatcgcactGGCTTCGAACG--CAAACAAGAAAA-AAAGACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------GCATATAGAAAATACTTA-------------CACGGT-ACTTAACAGTTTCTGGAAGTGTTG-AT-ATT-CTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-AT
gi|3 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGCTTCGAACAAACAAACAAGAAAA-AAAGACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------TGCGTATAGAAAATACT-------------TA-------------CACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATT-CTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-AT--TTA-AGTA--AGGTAA-A-ATGGGATATTGGTT-TGTTGATTATTCGTGGATA
gi|14 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCTTTAAACG--CATGTAAAAAAA-AAA----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|10 : tgcaagtcaaataccgaatcagcaAACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTC---ATCGAT-------------TGTGTATAGA----AAA-------------TA-------------CACTGGA-CTTGACAGTTTCTTGAAGTGTTG-TT-TTT-CTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-AT--CAA-AGTA--AAGT-T-ATATGAGACAAACGTT-TGTGAATCATTCGTGGAT
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAATAGCT-------------T-------------ATA-------------GA-------------CAT------TTCTCATTTTTTGGGAACGTTGTATTGTT-CTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AA--GTATAATGTTAAGT-C-ATGCGGGGAATT-GTTGTGTGAACCAGTCCTTGATTAGTTG
gi|11 : aaaacgtatttgctattgacttcttgataactctattCATTTTCTAGAAGTATTA-ATTATT-CTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGATAGTTA-AAttctaaata
gi|4 : cttgtatG-AT-ATTACATTCGCGCATGCGCAAA---ATAATATCAagtacctttttaaactatttatggattgtttgc
gi|6 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgtG-AT-ATTACATTCGCGCATGCGCAAA--AG-AATATCActattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|12 : caacaccaaatgcacttgcaattaaatatcgcactggcttcgaacacaaacaagaaaaaaaagaggagacatccgtttctttacttctgttctcgtatgacaacagtgcaaaacacaatattcgctctgcatttagatagataacaatatatccatatgcttttgttgaaatttaaaatgatacgtgcatcttaaagtcataaattgcttatagaaaatacttacacgggactttacagtttctggaagtgt-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-AT--TTA-AGTA--AAGT-TAA-ATGGGATATTAGTT-TGTTAATCATTCTTAGATGGGTTGctgttacgtcatacagacaatttacatattttatttataaatgactgatggggaacccgttaccagtattctgaaaacacgtaccaataattcagtaaaatatcaatacattttatttaccaaagccgctgaaaggtttctattgaacagaaatca
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-AT--TTA-AGTA--AAGT-TAA-ATGGGATATTAGTT-TGTTAATCATTCATGGATAGGTT
gi|15 : ctgTTAT--ATTGAACAGAAATCATCATATATTGCAT-AT--TTA-AGTA--AAGT-TAA-ATGGGATATTTGTT-TGTTAATCATTCGTGGATAG
gi|16 : T-T-A-ATGGGATATTAGTT-TGTTTATCATACGTTGATAGGTTGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 2222222222222222222222222222222222222222222222222222222222 22 11111
lowQualScore : 1 1 111 0 1 2222 0 1 1 77 2 0 0 1 0 33333333 00 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 888 6666666666666666666666666666666666666666666666666666666666 11 1 4 8 0 66 4 3 00000 2 3 3 4 55 55 4 55 4 4 2 4 4
lowQualScore : . . ... . . .... . . . .. . . . . . ........ .. . ..................................................................................................................................................... .. .. . .... . .. . . ... .......................................................... .. . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 0 666 1 0 1111 7 7 4 99 1 3 3 4 4 33333333 77 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 888 8888888888888888888888888888888888888888888888888888888888 88 0 4 9 7 11 0 1 00000 5 6 6 1 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------ACGT-------------ATAGAAAATA----CACGGGAACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATNAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCNGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------ACGT-------------A-------------CACGGGAACTTNACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------ACAT-------------A-------------CACGGGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTTAG-TGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTC---ATCGAT-------------T-------------GTGT-------------ATAGAAAATA----CACTGGA-CTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTC---ATAAAT-------------T-------------ACGTTTAGAAAATACTTA-------------CACGGGA-CTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTT--AAAGTGAAATAGAATATAATACGATGTCATATT-ATTTCCAGTTATAAAATATTGCATCTTTCTATACT--ATTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAAT-------------T-------------GCGT-------------ATAGAAAATACTTACACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTC---ATAAAT-------------T-------------GCGT-------------ATAGAAAATACTTGCACGGG-ACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTC---ATAAATTGCATATAGAAAAT-------------ACTT-------------A-------------CACGGT-ACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTC---ATAAAT-------------TGCTTATAGAAAATACTT-------------A-------------CACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAATAGCT-------------T-------------A--T-------------A-------------GAC----ATTTCTCATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 1111 333333333 11 11111
lowQualScore : 1 1 0 111 0 0 2222 0 1 1 77 1 0 0 1 0 33333333 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 55 4 0 0000 111111111 66 88 1 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . ... . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . .. . . .... ......... .. .. . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 666 1 7 1111 7 7 4 99 0 3 3 4 4 33333333 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 44 5 1 6666 999999999 44 99 0 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTG-CGTATAGAAAA----TA----CTT--ACG-GGAACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTA-CGTATAGAAAA----TA----C----ACG-GGAACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTA-C---------A----TA----C----ACG-GGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTG-TGTATAGAAAA----TA----C----ACT-GGA-CTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTA-CGTTTAGAAAA----TA----CTTACACG-GGA-CTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATA-TTATTTCCAGTTATAAAATATTGCATCTTTCTATACTA--TTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTG-CGTATAGAAAA----TA----CTTACACG-GGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTG-CGTATAGAAAA----TACTTGC----ACG-GG-ACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTG-CATATAGAAAA----TA----CTT--ACACGGTACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTG-CTTATAGAAAATACTTA----C----ACG-GG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA--TAGCTTATAGA-------------------C-----ATTTCTCATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 22 11111
lowQualScore : 1 1 0 111 0 0 2222 0 1 1 77 1 0 0 1 0 33333333 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 4 0 7777 44 99 2 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . ... . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . . . .... .. .. . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 666 1 7 1111 7 7 4 99 0 3 3 4 4 33333333 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 5 1 1111 22 11 1 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTT--ACGCGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTT--ACG-GGAACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTAC---------ATAC----ACG-GGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTGTGTATAGAAAATAC----ACT-GGA-CTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTACGTTTAGAAAATACTT--ACACGGGACTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATA-TTATTTCCAGTTATAAAATATTGCATCTTTCTATACTA--TTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTT--ACACGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTGCGTATAGAAAATACTTGCACG-GG-ACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCATATAGAAAATACTT--ACACGGTACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTGCTTATAGAAAATACTT--ACACGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA-TAGCTTATAGA---CATTT----------CT---CATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 11111
lowQualScore : 1 1 0 111 0 0 2222 0 1 1 77 1 0 0 1 0 33333333 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 4 0 3 2 5 2 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . ... . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . . . . . . . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 666 1 7 1111 7 7 4 99 0 3 3 4 4 33333333 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 5 1 2 0 1 1 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACGCGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTAC---------ATAC--ACG-GGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTGTGTATAGAAAATAC----ACTGGACTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATA-TTATTTCCAGTTATAAAATATTGCATCTTTCTATACTA--TTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTGCGTATAGAAAATACTTGCACGGGACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCATATAGAAAATACTTACACGGTACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTGCTTATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA-TAGCTTATAGA---CATTT--------CT---CATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 11111
lowQualScore : 1 1 0 111 0 0 2222 0 1 1 77 1 0 0 1 0 33333333 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 0 1 0 0 2 5 2 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . ... . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . . . . . . . . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 666 1 7 1111 7 7 4 99 0 3 3 4 4 33333333 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 4 4 1 4 0 0 1 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAAT-------------TACATACACGGGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTGTGTATAGAAAATAC----ACTGG-ACTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTACGTTTAGAAAATACTTACACGGG-ACTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATA-TTATTTCCAGTTATAAAATATTGCATCTTTCTATACTA--TTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTGCGTATAGAAAATACTTGCACGGG-ACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCATATAGAAAATACTTACACGGT-ACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTGCTTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA-TAGCTTATAGA---CATTT---------CT---CATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 11111111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 11111
lowQualScore : 1 1 0 111 0 0 2222 0 1 1 77 1 0 0 1 0 33333333 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 0 1 0 0 2 5 2 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . ... . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . . . . . . . . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 666 1 7 1111 7 7 4 99 0 3 3 4 4 33333333 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 4 4 1 4 0 0 1 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATA-TTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAAT-------------TACATACACGGGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTGTGTATAGAAAATAC----ACTGG-ACTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATA-T-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTGTTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTACGTTTAGAAAATACTTACACGGG-ACTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATA-TTATTTCCAGTTATAAAATATTGCATCTTTCTATACTA--TTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTGTT--TACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTGTT--TCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTGCGTATAGAAAATACTTGCACGGG-ACTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT-------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTGTT--TACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCATATAGAAAATACTTACACGGT-ACTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTGCTTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA-TAGCTTATAGA---CATTT---------CT---CATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAA----GT--CTCTCTCTCTTTTTCCCAGCTTttctaaata
blockSeqs : A A TT ATAA A A TT A T GTCTGT TC AA AG T GTAC C CG G A . G T T AC A G CGTTA T T C A GA TA G AG T T C G T
blockSeqs : T A TT . T A . A C CTTA TT . G . . . . G A . C . T . . T . T . . G . . . . . . A . .
blockSeqs : A A T . T A . T T GT . . G . . . . G G . T . . . . T . A . . C . . . . . . A . .
blockSeqs : T A T . T A . A C CT . . G . . . . G A . T . . . . G . A . . C . . . . . . A . .
blockSeqs : T C T . T . . T T GT . . . . . . . A A . A . . . . T . A . . C . . . . . . T . .
blockSeqs : A . . . . . . A T . . . . . . T . . T . . . . T . A . . G . . . . . . A . .
blockSeqs : . . . T . . . . . . . T . A . . C . . . . . . A . .
blockSeqs : . . . . . . A . . T . . . . . . G . .
blockSeqs : . . . T . . A . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : TT* **
originalCons : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATA-T-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTTTCTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
finalCons : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATATT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTGTT--TCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGG-ACTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 22222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1111 11111
lowQualScore : 1 1 0 5 0 0 2222 0 1 1 77 1 0 0 1 0 11111111 99 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 00 5 0000 5 66 0 0 1 0 0 2 5 2 4 8 0 66 4 3 00000 2 3 3 1 55 55 4 55 4 4 2 4 4
lowQualScore : . . . . . . .... . . . .. . . . . . ........ .. ..................................................................................................................................................... .. .. . .... . .. . . . . . . . . . . . .. . . ..... . . . . .. .. . .. . . . . .
lowQualScore : 0 4 7 4 1 7 1111 7 7 4 99 0 3 3 4 4 22222222 22 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 00 7 6666 0 99 5 1 4 1 4 0 0 1 4 9 7 11 0 1 00000 5 6 6 0 55 00 0 55 0 0 4 0 0
consensus : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CT--CTCTCTCTG--TTTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
Reference ( family-2220 ) : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATGAAATAGAATATAATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTNTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----NT--CTCTCTCTG--TTTCCCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|1 : ACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATAATACGTTGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTCTCCTGGATACAAACGTTTGAACCAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTAGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACAT--GTTTATGCTTCAACGGATAATTGAACAGTTGTTAGATGTTTCTATTTAATAACTGTAAGTAAAGCGGTGAAACCACCCGGTACGAAATTGT-GTGGTACGAAACCTCCAACAA----CT--CTCTCTCTGTCTCTCTCTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACAACATTCGCTCTGCATTTAGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATT-------------ACATACACGGGAACTTTACAGTTTCTGGAAGCGTTG-AT-ATTCTTTTGCACATGCGCAAA--TGTAATATCATGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAACGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-ATAAA-GTT-AGTGGGATATTAGTT-TGTTAATC-ATTCGTGGATAGGTTGC
gi|10 : AACAATACATTTATATGA----TGTAGTTTAATTTTAAAA-CGTTACG--TGCATCTATAAGTCATCGATTGTGTATAGAAAATAC----ACTGGA-CTTGACAGTTTCTTGAAGTGTTG-TT-TTTCTTTTGCACATGCGCGAA--TGTAATATCTTGTTACGTCA-TAAAGAAAATTTACATAGTTTATTTGTAAATGACGGATGGAGAAATCCGTTACGTTACCTGTATTT-TGTAAACACGTATTACATTCTTCACTAAACTATCAATATATTTTATTTACCAAGGCCGCAGAAAGGAGTATAT--ATTGAACAGAATTCATGATATATTACAT-A--TCAAA-GTAAA-GTTATATGAGACAAACGTT-TGTGAATC-ATTCGTGGAT
gi|11 : CATTTTCTAGAAGTATTA-ATTATTCTCTTTCATACGAGCGAAACTG-ATTATTATGTTGAGGCAATACAGAAAATTTGCAT--TTTGTTTATATATCACAAATAGG-AAATG-----CATTTCCTGTACAC-CGAGAACACGTACTC-ATTTGTCAGTACAATATCAATAT-CTTTATTTATTAAAGACGCGGAAA----TTAATTAATTGAATAGAAATCGCCACATATGACATGA--T---------A-GTTAAA------AGTACCT-TTTTAAACTATTTATGGATTGTTTGC
gi|12 : cttgtat-TACAGACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACT-----CGTTACCAGTATTC-TGAAAACACTTACCA-ATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCAGCCGAAAG--GTTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCTTAGATGGGTTG
gi|13 : TACCA-TGATC-TGAAAACACGTACCA-GTAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG--GTTTAT--ATCGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTAGTT-TGTTAATC-ATTCATGGATAGGTT
gi|14 : ctgCTTTAAACG--CATGTAAAAAAAAAA-----TACAGTAGATCGT-CGTTTGATGACTTCAATTATATTAAGGCAACGTTGCAA
gi|15 : tgcaagtcaaataccgaatcagcaTTAT--ATTGAACAGAAATCATCATATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATATTTGTT-TGTTAATC-ATTCGTGGATAG
gi|16 : ATTG----A--TTGGA-GCAAATGTTTAATGGGATATTAGTT-TGTTTATC-ATACGTTGATAGGTTGC
gi|17 : AAACCACCTGGTATGAAATTGCAGCGGTAAGAAACCTCCttta
gi|2 : aACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATATAATACGATGTCATAT-ATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCAT--GTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAAGCGGTGAAACCACCTGGTACGAAATTGTAGTGTTACGAAACCTCAAACAAGTCTGT--CTCTCTCTG--TTTCttc
gi|2 : cGACTTCGAACG--CAAACTAGAAAAAAAAGACGTACAGTAGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTATATGC----TCTTGTTGAATTTCAAAA-TGTTACG--TGCATCTAA--GTCATAAATTACGTTTAGAAAATACTTACACGGGA-CTTCACAGTTTCTGGAAGTGTTG-AT-ATTATTTTGCACATGCGCGAA--TGTTATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACA-----CGTTACCAGTATTC-TAAAAACATGTACCA-AAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG--ATTTAT--ATTGAACAGAAATATTC--ATATTGCAT-A--TTTAA-GTAAA-GTTAAATGGGATAGTAGTT-TGTTAATC-ATTCGTGGATAGGTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccgacttcgaacgcaaactagaaaaaaaagacgtacagtagacgtccgtttctttacttcagttctcgtatgacaacagttcaaatcacaatattcgctctgcattttgatagttaacaatatatctatatgctcttgttgaatttcaaaatgttacgtgcatctaagtcataaattacgtttagaaaatacttacacgggacttcacagtttctggaagtgttgatattattttgcacatgcgcgaatgttatatcctgttacgtcatacagacaatttacatattttatttatgaatgacggatggggaaacacgttaccagtattctaaaaacatgtaccaaaaattcagtaaaatatcaatattttctatttaccaaagccgccgaaagatttatattgaacagaaatattcatattgcatatttaagtaaagttaaatgggatagtagtttgttaatcattcgtggataggttgct
gi|3 : cacttggtccagtgtgacagttccatttcctagatataaaattgaatagaatataatacgatgtcatatatttctagttataatatgttgcatctttcaatactagatttactttcctagatacaaacttttgaacaagaaaataagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagttaaaataaaattgggtccataaaattagtttacatgtagacaatgtaaagttctgtatggcatgtataacctttaacggatggttgaacagttgttacatgcgtctattaagtaactgtaagtaaagcggtgaaaccacctggtacgaaattgtagtgttacgaaacctcaaacaagtctgtctctctctgtttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatatacgattaaatacgccaaaggcacttgcagttaaatatcgcaccACTTTGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAG--TGAAATAGAATATAATACGATGTCATATTATTTCCAGTTATAAAATATTGCATCTTTCTATACT--ATTTACTTTCTTAGATACAAACTTTTTAACCAGAAAATAATCACATGTATATAAATATATAATTGCAACACAC-AAAAGGTTAGTATACAGAGATATGATAAAATTGGGGCCATTAAATTGGT------------AATGTAAAGTTTTATATGACAT--GTATAAG-TTTAATGGATGATTGAACAGTTGTTACACGCTTCTATTAAATAACTGTAAGTAAAGCGGCGAAACCACCCAGTACGAAATTGTAGTGGTACGAAACCTCCAACAA----CTTACTATCTCTG--TTTACCGGCTTt
gi|3 : GCTTCGAACAAACAAACAAGAAAAAAA-GACGTACAGTAGA-CCTCCGTTTCTTTACT-CAGTTCTCGTACGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAAATAGTTAACAATAAATCTATATGC----TTTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCGTATAGAAAATACTTACACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCACATACGCAAA--TGTAATATCTTAATATGTCA-TAGAGACATTGTACATAGGTTATTGATAAATGACGGATGGGGAAACC-----CGTTACC--T-TTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATATATTTTATTAACCAAAGCCGCGGAAAG--GTTTAT--ATTGAAAAGAAATCATCATATATTGCAT-A--TTTAA-GTAAG-GTAAAATGGGATATTGGTT-TGTTGATT-ATTCGTGGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttcgaacaaacaaacaagaaaaaaagacgtacagtagacctccgtttctttactcagttctcgtacgacaacagtgcaaaacacaatattcgctctgcatttaaatagttaacaataaatctatatgcttttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcgtatagaaaatacttacacgggactttacagtttctggaagtgttgatattcttttgcacatacgcaaatgtaatatcttaatatgtcatagagacattgtacataggttattgataaatgacggatggggaaacccgttacctttctgaaaacacgtaccaataattcagtaaaatatcaatatattttattaaccaaagccgcggaaaggtttatattgaaaagaaatcatcatatattgcatatttaagtaaggtaaaatgggatattggtttgttgattattcgtggata
gi|4 : actttgtccagtgtgacagttccatttcctagttaaagtgaaatagaatataatacgatgtcatattatttccagttataaaatattgcatctttctatactatttactttcttagatacaaactttttaaccagaaaataatcacatgtatataaatatataattgcaacacacaaaaggttagtatacagagatatgataaaattggggccattaaattggtaatgtaaagttttatatgacatgtataagtttaatggatgattgaacagttgttacacgcttctattaaataactgtaagtaaagcggcgaaaccacccagtacgaaattgtagtggtacgaaacctccaacaacttactatctctgtttaccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATATAATACAATGTCATAT-ATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTT-CCTAGATACAAACTTTTGAACAAGAAAATAAGTGCCTGTAC----ATATATAATTGCAACACACAAAAAGGTTGGTACAAAGAGATATAATAAAATTTGGGCCATAAAATTGATCTACATGTAGACAATGCAAAGTAATATACGACAA--GTTTAAGCTTAAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGTGGTGAAACCATCCGGTATAAAATTGTAGTGGTACGAAACCTCCAACAA----GT--CTCTCTCTG--TTTCCCGGCTT
gi|4 : cGGCTTCGAACG--CAAACAAGAAAA-AA-GACGTACAGTTGA-CGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTGCAAAACACATTATTCGCTCTGCATTTAGATAGTTAACAATGTATTTATATGC----TCTTGTTAAATTTTAAAA-TGTAATG--TGCATTTTAAAGTCATAAATTGCGTATAGAAAATACTTGCACGGGA-CTTTACAGTTTTTGGAAGTGTTG-AT-ATTATTTTGCGCATGCGCGAA--TGTAATATCCTATTACGTGA-TACAGACAATTTACATA-TTTATTCATAAATGACGGATGGGGAAACC-----CGTTACCAGTATTC-TGAAAACACGTAACA-ATAATTGAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAT--GTTTAT--ATTAAACATAAATCATTATACATTGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccggcttcgaacgcaaacaagaaaaaagacgtacagttgacgtccgtttctttacttcagttctcgtatgacaacagtgcaaaacacattattcgctctgcatttagatagttaacaatgtatttatatgctcttgttaaattttaaaatgtaatgtgcattttaaagtcataaattgcgtatagaaaatacttgcacgggactttacagtttttggaagtgttgatattattttgcgcatgcgcgaatgtaatatcctattacgtgatacagacaatttacatatttattcataaatgacggatggggaaacccgttaccagtattctgaaaacacgtaacaataattgagtaaaatatcaatatattttatttaccaaagccgccgaaatgtttatattaaacataaatcattatacattgca
gi|5 : cacttggtccagtgtgacagttccatttcctagataaaaaattaaatagaatataatacaatgtcatatatttccagttataaaatgttgcatctttcaatactagatttacttcctagatacaaacttttgaacaagaaaataagtgcctgtacatatataattgcaacacacaaaaaggttggtacaaagagatataataaaatttgggccataaaattgatctacatgtagacaatgcaaagtaatatacgacaagtttaagcttaaacggatgattgaacagttgttacatgcttctattaaataactgtaagtaaagtggtgaaaccatccggtataaaattgtagtggtacgaaacctccaacaagtctctctctgtttcccggcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgccaaaggtacttgtaattaaatatcgcaccACTTGGTCCAGTGTGACAGTTTTATTTCTTAGTTAAAAAATGAAATAGAATATAATACGATGT------------------AAAATGTTGCATCTTTCAATACTAGATTTACTTCCCTAGATACAAACTTTTGAACCAGAAAATAAGTTCATGTAC----ACATATAATTGCAACACACAAAAAGGTTGGTACACAGA--TATAATAAAATTGGGGCCATAAAATTGGTCTACATATAG-CAATTTATAGTTCTATATGACATTTATATAAGCTTTAATGGATGGTTGAACAGTTGTTACATGCTTATATTAATTAACTGTAAGTAAAGCGGCGAAACCACCCGGTACGAAACTGTAGTGGCACGAAACCTCCAACAA----CT--CTCTCTCTG--TTTACCGGCTT
gi|5 : cGGCTTCGAACG--CAAACAAGAAAAAAA-GACGTACAGTAGA-CATCCGTTTCTTTACTTCAGTTCTCGTATGCCAACTGTGCAAAACACAGTATTCGCTCTGCATTAAGATAGTTAACGATATATCTATATGC----TCTTGTTGAATTTTAAAA-TGTTACG--TGCATCTAAAAGTCATAAATTGCATATAGAAAATACTTACACGGTA-CTTAACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGTGCATGCGCGAA--TATAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATATATAAATGGCGAGTGGGGAAACC-----CGCTACCAGTATTCTTAAAAAAACGTACCA-ATttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactggcttcgaacgcaaacaagaaaaaaagacgtacagtagacatccgtttctttacttcagttctcgtatgccaactgtgcaaaacacagtattcgctctgcattaagatagttaacgatatatctatatgctcttgttgaattttaaaatgttacgtgcatctaaaagtcataaattgcatatagaaaatacttacacggtacttaacagtttctggaagtgttgatattcttttgtgcatgcgcgaatataatatcctgttacgtcatacagacaatttacatattttatatataaatggcgagtggggaaacccgctaccagtattcttaaaaaaacgtaccaat
gi|6 : cacttggtccagtgtgacagttttatttcttagttaaaaaatgaaatagaatataatacgatgtaaaatgttgcatctttcaatactagatttacttccctagatacaaacttttgaaccagaaaataagttcatgtacacatataattgcaacacacaaaaaggttggtacacagatataataaaattggggccataaaattggtctacatatagcaatttatagttctatatgacatttatataagctttaatggatggttgaacagttgttacatgcttatattaattaactgtaagtaaagcggcgaaaccacccggtacgaaactgtagtggcacgaaacctccaacaactctctctctgtttaccggcttttagcctaataaaacaatgcgtggatggagagctttttaattacataattattattgggacataattatcctttttatctcggtggatatacaataaatatgccaaaggcacttgcaatttgatatctcactGGCTTCGAACA--CAAACAAGAAAAAAA------AGAGGAGA-CATCCGTTTCTTTACTTCTGTTCTCGTATGACAACAGTGCAAAACACAATATTCGCTCTGCATTTAGATAGATAACAATATATCCATATGC----TTTTGTTGAAATTTAAAA-TGATACG--TGCATCTTAAAGTCATAAATTGCTTATAGAAAATACTTACACGGGA-CTTTACAGTTTCTGGAAGTGTTG-AT-ATTCTTTTGCGCATGCGCGAA--TGTAATATCCTGTTACGTCA-TACAGACAATTTACATATTTTATTTATAAATGACTGATGGGG-AACC-----CGTTACCAGTATTC-TGAAAACACGTACCA-ATAATTCAGTAAAATATCAATACATTTTATTTACCAAAGCCGCTGAAAG--GTTTCT--ATTGAACAGAAATCA
gi|7 : caacaccaaatgcacttgcaattaaatatcgcactACTTGGTCCAGTGTGACAGTTCCATTTCCTAATTAAAAAATGAAATAGAAAATATTA-GATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATTTACTTTCCTAGATACAAACTTTTGAACCAGAAAGTAAGTGCATGTAC----ATATATAATTGCAACACACAAAAAGGATGTTACAC----ATA----------------ATAAAATTGGTCTACATGTAGACTATGTAAAGTTCTATATGACAT--GTTTAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGGTGAAACTACCCGGCACGAAATTGTTGTGGTACGAAACCTCCAACAA----
gi|8 : ACAGCAGATCTATATACGTACTCCCATTGCGTT--AAAACTGTTACGCGTGCATC--ACGGTCTTAA-TAGCTTATAGA---CATTT---------CT---CATTTTTTGGGAACGTTGTATTGTTCTCTTGCACGTGCGCGAA--TTTGATATCCTGTTACATCA-TACAAA--------ACATTGTATTGGTACATGAAGGCTTGGGAAATC-----CGTTACCTGTATAC-GGAAAACACGTACCC-ATAA---AATTATATATAAATATA--TTATTTGTCGAAGCCGAAGAAAT--GTATGC--ATTGCATAGAAATCATTATATATAACAT-AAGTATAATGTTAA-GTCATGCGGGGAATT-GTTGTGTGAACC-AGTCCTTGATTAGTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaccggcttttagcctaataaaacaa
gi|9 : aaaacgtatttgctattgacttcttgataactctattACTTTGGCCAGTGTGACAGTTCCATTTCCTAGATAAAACATTAAATAGAATATAATACGATGTCATAT-ATTTCCAGTTATAAAATATTGCATCTTTCAGTACTAGATTTACTTTCTTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTAT----ATATATCATTGCAACACACAAAAAGGTTGGTAAACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACACTGTAAAGTTCTATATGACAT--GTATAAGCTTGAACGGATGATTGAACAGTTGTTACATG-------------ACTGTAAGTAAAGCGTTGAAACATACCGGTACGAAATTGTAGTGATATGAAACCTCCAACAAGT--CT--CTCTCTCTT--TTTCCCAGCTTttctaaata