lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 1 1 1 11 1 222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 55555 111 333 1 111 1 2222222 1 1 99999999999999 22 11111 1111111 11 9999999999999999999999999999999999999999999999999999 11 22 1 1 111 11 5555555 111 111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111111111 1 22 66666666666666666666666666666666666666666666 1 111 11 2 11 111111111111 111111 333333333 11 2222 1 11111 1 1 11 11 4444444444444 1 11 11 1111111111111111111111111111111111111 222 1 1 1 1 6666 11
lowQualScore : 2 5 0 8 2 99 2 5 2 0 2 2 2 333 66 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 00000 333 6 555 2 5 2 8 888 777 4 4 4 0 1 9999999 6 0 0 88 99999 1 0 7 1 3 3 3 7 66666666666666 3 44 9 5 99999 6 5 00 5 22222 6666666 777 3 3 33 0000000000000000000000000000000000000000000000000000 33 1 5 3 7 55 5 3 5 6 111 6 00 3 1111111 111 6 6 2 2 111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 7 9 2 3 999999999 77 2 2 5 4 11 88888888888888888888888888888888888888888888 5 333 6 5 33 0 4 1 3 11 4 999999999999 444444 555555555 77 6 77 44 7777 3 66 77777 2 1 5 55 11 3333333333333 5 44 55 5555555555555555555555555555555555555 333 1 4 3 99999 5 6 7 7 1111 22
lowQualScore : . . . . . .. . . . . . . . ... .. . .................................................................................................. . ..... ... . ... . . . . ... ... . . . . . ....... . . . .. ..... . . . . . . . . .............. . .. . . ..... . . .. . ..... ....... ... . . .. .................................................... .. . . . . .. . . . . ... . .. . ....... ... . . . . ... ........................................................................................ . . . . . ......... .. . . . . .. ............................................ . ... . . .. . . . . .. . ............ ...... ......... .. . .. .. .... . .. ..... . . . .. .. ............. . .. .. ..................................... ... . . . ..... . . . . .... ..
lowQualScore : 8 0 0 8 0 55 5 0 0 2 0 2 2 222 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00000 000 7 000 5 0 3 7 555 666 0 0 0 4 5 6666666 0 8 0 44 22222 2 6 0 4 6 9 6 4 55555555555555 3 33 2 1 11111 3 2 00 0 55555 2222222 222 4 4 88 4444444444444444444444444444444444444444444444444444 66 7 3 9 0 33 0 5 0 0 777 7 22 3 8888888 777 0 0 2 5 777 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 3 0 5 5 888888888 77 5 2 0 8 88 00000000000000000000000000000000000000000000 0 444 7 0 88 8 0 8 5 22 3 888888888888 777777 333333333 99 7 11 33 4444 4 99 11111 0 9 0 88 99 2222222222222 1 99 99 7777777777777777777777777777777777777 333 0 7 3 55555 0 0 0 0 0000 00
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGNCTCCAACCCGAAATTCGGACCCACTGGCGCCGCCTAGCGGTGAGGNNATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCAT-TTTTTT-CAGAAAAAGTCAAANTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGNTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTG--TAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTT-ATTTTCACTCTTTTTGCTGTAGCG---GC--AC-GGGG-TTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--AT-TT-------TT---------TTTC---------A---------CCAT----GTT--CCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCC-CCAGAAATCAAACA---TATCAT---ATACTACGGTTATTGACCTGTCCGGTAGGCTCAA---ACATG--------CTCC--AGAAATAG-----------T----------------------N-------------A------A---------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG----TTTTCTGCAAG-GCTTATGGTTAGATAAAGCGATTGGTGTAAGAAAAACAATT------CGNAANCA----------TAT----------AN-----TTAGTGATGTAGGGTCATTTGAAATTAAGGAAAAACTGGGTTTTTGGCCACTTTCGGA--CCAAAAATAGCCGTTTTTCATCAATTTCAACAAGTTCCA--AA-ATCTT--TATTANTTCACATAA---ACGG--CTG--ATTTTTGTA-CCATT-CTTTANCGGAACATGTATATT--TTCTTGTTTTTACCACAAAT-A-GTTTT--CAAA--AANNTATTAANGACCCGTGCGACACGNGCAAACATAGAACCTA----AACGC----A-TAAAT---TCT-A-AAATCGTTT---CTGTGNC-CACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACAC
Reference ( gi|2 ) : GTCATTTAATTTGTC-CGTGGCCCCTAAGGCTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCAT-TTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTG--AAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTT-ATTTTCACTCATTTTGCTGTAGCG-AAGCGAAC-GGTG-TTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--AT----------TT---------TTTC---------A---------CCAA----GTT--CCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCC-CCATAAATCGAACA---T---AT---ATGCTACGGTTATTGATCTGTCCGGCAGGCTCAA---ACATG--------GTCC--ACAAATGG-----------T----------------------G-------------A------A---------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG----TTTTCTGCAAG-GTTTATGGTCAGATAAATCAATTGGTGTAAGAAAACTAATT------CATAACCA----------TAT----------AC-----TTAGGGATTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGA--CCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCA--AA-ATCTT--TATTAATTCACATAA---ACGG--CTG--ATTTTGGTA-TCATT-ATTTAGAAAAACATGTTTATT--TTCTGGATATTACAACCAAT-A-CTTTT--CAAA--CATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGG----TA----AACAC----ACCACAT---TCTAAGAAATTGTTT---CTATGAC-CACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|1 : GTTATTTAATTTTTC-CGCCGCCCATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|3 : tagtGTGATTTAATTTTTC-CGTTGCTTCACAGGCTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCAT-TTTTTT-CAGAA---ATCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAA--TAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTT-ATTTTTACTCTTTTTGCTGAAG----AGC---CTGGTG-TTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATG--AT----------TTATTCAAATTTTTT---------A---------CCAT----GTT--CCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCT-ACAGAAATCAAACA---TATCAT---ATACTACAGTTATTGACCTGTCCGGTAGGCTGAA---ACAT----------CCCTTAGAAATAGTTATTTTTAGCT----------------------A-------------A------AAACAATTATGTTCGAACGGTTTTTT-GGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG----TTTTCTACAAG-GTTTAT----AAATAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|5 : aagtGTGATTTAATTTTTTTCGCGACCTCACAGGCTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGactatagtcattaaaggtctaatgaaaaaaaaaaac
gi|21 : agaGTGATTTAATTTTTC-CGTCGCCTCACAGTGTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttggttgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|5 : tCTCTACAAGTCGCTGC-----ACGGCAT-TTTTTTTCCGAA---ATCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTA--CAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTAATTGT------TTTTGCTGTGGC--ACACGA------G-TTCGAACATGCCACGG-TGGTTGTTGGTa
gi|1 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACAAGTCACGGC-----ATTTCATGTTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTG--TAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTT-AATTATACTATTTTTGCTGTAGCG----C--AC-GGGG-TTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATG--ATTTTTTTTTAATT---------TTTC---------A---------CCAT----GTT--CCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCC-CCAT-AATCAAACACATC---AT---ATACTACGGCTATTGACCTGTCCGGCAGGCCCAA---ACATG--------GTCC--AGAAATAG-----------T----------------------GATTTTTGGCTTGAA------A---------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG----TTTTCTGCAAG-GTTTATGGTCAGATAAAGCCATTGGTGTAAGAAAAATAATG------CTAAACCA----------TAC----------AC-----TTAGCGATATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGA--CCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCA--AA-TTCTT--TATTATTTCACATAA---ACGG--CTG--ATTTTGGTA-TCATT-ATTTAGAGAAAAATGTATTCT--TTCTGGATACTACAACCAAT-A-CTTTT--CAAA--CCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-G----T------ACAC----ACTAAATATGTCTAA-AAATTGTTT---CTGTGAC-CACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|4 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaTCACGGCTTTTCACGGC-T-TTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTT--TATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTT-ATGTTCACTATTTTTACTGTAGCG----C--AC-G-TGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGTTCAAGA--TT---------TTTC---------A---------CTA------TTCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGG-AATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACA-TCCACTATCAATCGGATA---TATCAT---ATACTACGGATATTGCCCTGTCCGGCATGCTCGA---AC--G--------CTCC--AGAAATAG-----------TAATTTTGACGTTTATTTGCCTCA-------------A------A---------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAAC---GGTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGCGATTGATGTAAAAAAAC-AATT------CGAAAGCATATTATATATTAT----------AA-----TTAGTGAAGTAGGGTCATTTGAAATTAAGGAAAAA
gi|13 : caagtattaTCACGGCTTTTCACAG--T-TTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTA--TATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAAaacactacgtacaa
gi|19 : caagtattaTCACGGCTTTTCACAGC---TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|15 : caagtattaCACAGACTT--------GGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTT--TATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AA
gi|8 : aaactttaTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTA--TATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTT-ATTTTCACTCTTTTTACTGTAGCGTAAGTG--C------TTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGTTCAAGA--TT---------TTTT---------A---------CCAT----GTG--CCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|10 : --ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAA--TTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTT-ATTTTCACTCATTGTGCTGTAGC----GC--AT-GGGG-TTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTG--TTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTT-ATTTTCACTCATTGTGCTGTAGC----GC--AT-GGGG-TTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTG--TTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTT-ATTTTCACTCATTGTGCTGTAGC----GC--AT-GGGG-TTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|6 : GCAT-AAAT-AATTTT-ATTTTCACTCTTTTTTCTGTAGTG----C--AC-GGGG-TTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------GAAAAA---TCGCATACCGACAAATATG--AT----------TT---------TTTT--------------------CAAAATTGTTA-CCATGC----CTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCC-CCAGAAATCAAACA---T---ATCATATAGTACG-TTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCTC--AAAAACGA-----------C----------------------T-------------A------A---------GTCCGAACGTTTT-TTCGGCACGGGTTGACC
gi|7 : tttggttAATTTT-ATTTTCACTCTTTTTGCTGTAGCG----C--AC-GAGG-TTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATG--AT----------TT---------TTTCAAAATTTTGA---------CCAT----GTT--CCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCC-CCAGAAATCAAACA---TATCAT---ATACTACGGTTATTGACCTGTCCGGTAGGCTGAA---ACATA--------CTCA--AGAAATAT-----------T----------------------C-------------ATTTTTTG---------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|18 : tAATTTT-ATTTTCACTCATTTTGCTGTAGTG----C--AT-GGGG-TTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|14 : -TTCCAACATG-CACGGATG-TTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATG--A
gi|5 : aaaatttaacttattaagtatgtctgaatatctgaccgtagcgcacatacGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATG--AT----------TT---------TTTC---------AAAATTTTTACCAT----GTT--CCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATT-TTACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCC-CCAGAAATCAAACA---TATCAT---ATACTACGGTTATTGACCTG------------AA---ACATG--------CTCC--AGAAATaatttcatgat
gi|22 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgtt-------------A------A---------GTCCGAACGTTTT-TTCGGCATGGGTTGACCattcaatttttgctcaaag
gi|9 : ctCGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG----TTTTCTGCAAG-GTTTATGGTCTGATAAAGCAATTGGAGTAAGAAAA-TAATT------CTTAACCA----------TAT----------AC-----TTAGTGAATAAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGA--CCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACC--AA-ATCTT--TATTAATTCACATAA---ACGG--TTT--AATTTGGTA-TCATT-ATT
gi|16 : ATTAGCCTGGTCTGGAACTTTAACGGTGT----TTTTCTGCAAATGCTTATGGTTAGATAAAGCGATTGATGTAAGAAAAACAATT------CG-AAGCA----------TATTATATATAATAA-----TTAGTGATGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT----TTTTCTGCAAT-GCTTATGGTTAGATAAAGTGATTGGTGTAAGAAAAACAATTCGAAAGCATAA-TA----------TAT----------ATTATGATTAGTGATGAAGTGTCATTTGAAATTAAGGAAAAA
gi|20 : aAAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGA--CCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|3 : TTTCAGAAATCAAA-------GTTCATTAT---TTTCAACAAGTTCCAC-AG-ACCTTAATATTAGGTC-TACAA---TT----CTG--ATTTTTGTA-CCATT-CTTTAGCGGAACATGAATAGA--TTCTTGTTTTTACCACAAATAA-ATTTG--TAAA--C--TCGTTAAAGACCAGTGCAGCACGTGCAAACATAGTACCTA----AACGC----Attt
gi|13 : aagtgtgatttaatttttccgttgcttcacaggctccaacccaaaattcagacccactggcactgcttagctgtgagatgattgaaccatttaggcattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcacggcacggcattttAAAA-AGTCAAATTTCATCATTTTCAACAAGTTCCACAAA-AT-------TCAAT--ACATGGTCTACAGGTCTGTTATTTTTGTA-CCATT-CTTTATCTGAACATGTATATT--GTCTTGTTTTTACCACAAAT-A-GTTTT--CAAA--AAAATATTAATGACCCGTGCGACACGGCCAAACATAGAACCTA----AACGC----Agaaataaattttatttttactctttttgctgaagagcctggtgttcaaacatgcatgtgtggttgttggcagtcattcaattcgtacagtggacatataggtacactctgatatccagattgatgggttccgattaagtattttcgaaaaaatctcataccaacaaatatgatttattcaaattttttaccatgttccatgcatccggggcaccttattcctagcgctaatgagatgattgttacatcatttcttagggatttccaatgactacagtctacagaaatcaaacatatcatatactacagttattgacctgtccggtaggctgaaacatcccttagaaatagttatttttagctaaaaacaattatgttcgaacggttttttggcatgggttgaccggtttgccagaggtcattagcccgatctcgaacttttacttgggttttctacaaggtttataaataaaactatagtcattaaaggtctaatgaaaaaaaaaaac
gi|5 : caagtattatcacggcttttcacagttttttttagTTCATCATTTTCAACAAGTTCCA--CATACCTTAATATTGGGTC-TACAA---TT----CTG--ACTTTTGTA-CCATT-CTTTAGCGGAACATGTACAGG--TTCTTGTTTTTACCACAAAT-A-ATTTTGCCGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAG----TACCTTAGCGCAGAAAATAAAT---TTT----AATTGTTTTTGCTGTGGCACACGAGgaaa
gi|4 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagTTTCAAAAAGTTCCA--CA-GACTT--CAATATTTGG--TCG---ACAGGTCTG--TTTTTTGTA-CCATT-CTTTATCGGAACATTTTTATT--TTCTTGTTTTTACCACAGAT-A-GTTTT--TAAA--AATATATTAAAGACCCGTGAGACACGGACAAACATAGAACCTA----AACGC------------------AGAAATCAATT---TTATGTT-CA-----CT-ATTTTTACTttcgaacatgccacggtggttgttggttgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|8 : caagtattatcacggcttttcacggcttttttttagaaaaagtcaaattccataatTG--TTTCTTGTA-CCATT-TTTTATCGGAACATGTATATT--TTCTTGATTTTACCACAAAT-AGTTTTT--TAAA--AAAATAATAAGGACCCGTGCGACAAAGCCAAACATAGAACCTA----AACGC----Agtagcgcacgtgcttcaaacatgcacatgtggttgttggtactccttcaattcgtacagggaacatctaggtacactctgatatacagattgataggttccgataagtattttcgaaaaattcacacaccggcaaatatgaaatgttcaagatttttcactattcgccacgcatctccgggaccacatcggtagcactagggaatgagttttacatcattcattagaaaaacccaatgccaacatccactatcaatcggatatatcatatactacggatattgccctgtccggcatgctcgaacgctccagaaatagtaattttgacgtttatttgcctcaaagtccgaacgtttttacggcaatgttcgaccggctcgccttaggtcattagcctggccgggaactttaacggtgttttttctgcaatgcttatcgttagataaagcgattgatgtaaaaaaacaattcgaaagcatattatatattataattagtgaagtagggtcatttgaaattaaggaaaaaaacactacgtacaa
gi|15 : TTTTTGTA-CCATTTCTTTATCTGAACATGTTTATT--GTCTTGTTTTTACCACAAAT-A-GTTTT--TAAA--AAAATATTAATGACCCGTGCGACACGGCCAAACATAGAACCTA----AACGC----Agaaatcaattttattttcactctttttactgtagcgtaagtgcttcaaacatgcacatgcggttgttggtactccttcaactcgtacagggaacatctaggtgcactatgatatacagattgatagtattttcgaaataatcacactccggcaaatatgaaatgttcaagattttttaccatgtgccacgcatttccgggaccttatcggtagcactaggggatgat
gi|11 : aaactttacacagacttggtctacaggtctgttTTTGGTAGCCATT-CTTTAGCGGAATATGT--GTTGATTCTTGTTTTAACCACAAAT-A-AGTTTG-CAAA---ATTCATTAACGACCCGTGCAATACGTGCAAACATAG----TA----gaa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 77777777777777777777777 1111111 111 1111 222222222 11111111111111111111111111111111111111111111111111111 111 777777777777777777777 11 11 1111 111 444444 222 4444444444 11
lowQualScore : 8 3 3 8 1 22 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 1 1 11 66 4 1 0 7 8 8888 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 33333333333333333333333 6666666 5 3 0 00 000 22 0 0000 222222222 88888888888888888888888888888888888888888888888888888 5 0 77 77 5 77 1 000 5 11 88 1 888888888888888888888 1 6 3 3 0 7 2 88 1 9 2 88 2222 8 7 8 8 6 7 6 8888 1 666 7 77 88 333333 0 444 5555555555 6 1 4 4 88 2
lowQualScore : . . . . . .. ................................................................................................ ..... .. . ... . . .. .. . . . . . .... . . . .... .. . . ..... . . ..... ....... .. . . ....................... ....... . . . .. ... .. . .... ......... ..................................................... . . .. .. . .. . ... . .. .. . ..................... . . . . . . . .. . . . .. .... . . . . . . . .... . ... . .. .. ...... . ... .......... . . . . .. .
lowQualScore : 0 2 8 0 0 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 0 0 77 99 0 0 8 5 1 5555 6 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 88888888888888888888888 2222222 0 4 2 66 000 11 9 7777 999999999 88888888888888888888888888888888888888888888888888888 7 7 66 99 7 99 7 000 7 99 55 0 555555555555555555555 0 7 5 0 2 0 0 00 0 0 0 88 0000 3 0 3 3 7 0 7 0000 0 333 7 77 00 333333 7 777 5555555555 0 0 0 0 00 5
consensus : GTGATTTAATTTTTC-CGCCGCCTCAC-AGGCTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAATTCTG--ATTTTTGTA-CCATTCTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTT--------T-------TT-------TTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTC---AAACA---------TGCTCCAGAAATAGT-------------NATTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGA--TAAAGCGATT---GGTGTAA-GAAAAACAATTCGAAANCA----------T----------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATT-ATTTAGANAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGNCACGTNCACGCATGG----TAAACGCA-NAAATATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCAC-AGNCTCCAACCCGAAATTCGGACCCACTGGCGCCGCCTAGCGGTGAGGNNATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAANTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGNTCTG--ATTTTTGTA-CCATTCTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTT--------T-------TT-------TTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTC---AAACA---------TGCTCCAGAAATAGT-------------NA----------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTTAGA--TAAAGCGATT---GGTGTAA-GAAAAACAATTCGNAANCA----------T----------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGTTTTTGGCCACTTTCGGACCAAAAATAGCCGTTTTTCATCAATTTCAACAAGTTCCAAAATCTTTATTANTTCACATAAACGGCTGATTTTTGTACCATT-CTTTANCGGAACATGTATATTTTCTTGTTTTTACCACAAATAGTTTTCAAAAANNTATTAANGACCCGTGCGACACGNGCAAACATAGAACCTAAACGCA-TAAAT---TCT-A--AAATCGTTTCTGTGNCCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTGGTA-CCATTCTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATGA----TTTTTTTTTAAT-------TT-------TTCACCA-TGTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCAT-AATCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCC---AAACA---------TGGTCCAGAAATAGTGATTTTTGGCTTGAA----------------------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGA--TAAAGCCATT---GGTGTAA-GAAAAATAATGCTAAACCA----------T----------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATT-ATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCATG-----TACACAC--TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTTGTA-CCATTCTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTGGTAGCCATTCTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : gGTA-CCATTCTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTTGTA-CCATTCTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA----
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTTTTGTACCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAATATTAATGACCCGTGCGACACGGCCAAACATAGAACCTAAACGCA-GAAaatttcatgat
gi|16 : aaactttacacagacttggtctacaggtctgttATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGA--TAAAGCGATT---GATGTAA-GAAAAACAATTCG-AAGCA----------TATTATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGA--TAAAGTGATT---GGTGTAA-GAAAAACAATTCGAAAGCATAATATATATT----------ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTA-AGGCTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTTGTA-CCATTCTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA------T--------T-------TT-------TTCACCA-AGTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTC---AAACA---------TGGTCCACAAATGGT-------------GA----------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGA--TAAATCAATT---GGTGTAA-GAAAACTAATTCATAACCA----------T----------ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATT-ATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGG----TAAACACACCACAT---TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCAC-AGTGTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : tA----------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctGTGATTTAATTTTTC-CGTTGCTTCAC-AGGCTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTTGTA-CCATTCTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATGA----TTTATTCAAA-T-------TT-------TTTACCA-TGTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TCCCTTAGAAATAGT-------------TATTTTT-----------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTATAAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTTGTA-CCATTCTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGTTCAAGA----T-------TT-------TTCACTA-TTCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTC---GAAC-----------GCTCCAGAAATAGT-------------AATTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGA--TAAAGCGATT---GATGTAA--AAAAACAATTCGAAAGCATATTATATATT----------ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCAC-AGGCTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTTGTA-CCATTCTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATGA----TTT--------T-------TTCAAAATTTTTACCA-TGTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG---------------AAACA---------TGCTCCAGAAATATT-------------CA----------------------A---------------tgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------G-AAAAA--TCGCATACCGACAAATATGA-----TT--------T-------TT-------TTCAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTAC-GTTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCT-CAAAAACGAC-------------TA----------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCtttttgctcaaag
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATGA----TTT--------TTTCAAAATT-------TTGACCA-TGTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TACTCAAGAAATATT-------------CATTTTTT----------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTTGTA-CCATTTTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGTTCAAGA----T-------TT-------TTTACCA-TGTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGA--TAAAGCAATT---GGAGTAA-GAAAA-TAATTCTTAACCA----------T----------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATT-ATT
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 55555555555555555555555555555555555555555 111 111 222222222 9999999999999999999999999999999999999999 1111111 111 1111 6666666666666666 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 44444444444444444444444444444444444444444 5 3 0 00 000 0 1 0 0 000 222222222 3 66 6666666666666666666666666666666666666666 5 0 77 77 5 0 0 8888888 000 5 11 1 4444 1 6666666666666666 1 6 3 1 0 7 1 1 2 4 4 3 1 1 5 3 6 5555 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . ......................................... . . . .. ... . . . . ... ......... . .. ........................................ . . .. .. . . . ....... ... . .. . .... . ................ . . . . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 00000000000000000000000000000000000000000 0 4 2 66 000 7 4 4 7 000 999999999 0 77 4444444444444444444444444444444444444444 7 7 66 99 7 7 4 1111111 000 7 99 0 2222 0 0000000000000000 0 7 5 0 2 0 0 0 5 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTTA------T-------TT-------TT--------CACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAA----ACCA----------T-----ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTT-------T-------TT-------TT--------CACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAA----ANCA----------T-----ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGANAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGNCACGTNCACGCATGGTAAACGCANAAATATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATGA----TTT-------T-------TT-------TTTAATTTTTCACCAT-GTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCCAA---ACAT---------GGTCCAGAAATAGT-GA--TTTTTGGCTTGAA---------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAA----ACCA----------T-----ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA----
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAaatttcatgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCATATTA----------TATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAA----AGCATAATATATATT-----ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA------T-------T-------TT-------TT--------CACCAA-GTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTCAA---ACAT---------GGTCCACAAATGGT-GA------------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATA----ACCA----------T-----ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctaGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATGA----TTTATTCAAAT-------TT-------TT--------TACCAT-GTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------CCCTTAGAAATAGT-TAT-TTTT------------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGTTCAAGA---T-------TT-------TT--------CACTAT-TCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTCGA---AC-----------GCTCCAGAAATAGT-AA--TTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAA----AGCATATTATATATT-----ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATGA----TTT-------T-------TTCAAAATTTT--------TACCAT-GTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG------------AA---ACAT---------GCTCCAGAAATATTCAA--TTTT------------------T---------------GCTCAAAtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------GAAAAA---TCGCATACCGACAAATATGA----TTT-------T-------TT-------T---------CAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTACG-TTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCTC-AAAAACGAC-TA------------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCg
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATGA----TTT-------TTTCAAAATT-------TT--------GACCAT-GTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------ACTCAAGAAATATT-CATTTTTT------------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGTTCAAGA---T-------TT-------TT--------TACCAT-GTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTA----ACCA----------T-----ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 77777777777777 111111 111 1111 222222222 9999999999999999999999999999999999999999 1111111 111 7777777777777777777 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 55555555555555 444444 3 5 3 0 00 000 0 1 0 0000 222222222 66 6666666666666666666666666666666666666666 5 0 77 77 5 0 0 8888888 000 5 11 1 6 3333333333333333333 1 6 3 1 0 7 1 1 1 1 1 1 5 1 0000 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . .............. ...... . . . . .. ... . . . .... ......... .. ........................................ . . .. .. . . . ....... ... . .. . . ................... . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 33333333333333 444444 4 0 4 2 66 000 7 4 4 7777 999999999 77 4444444444444444444444444444444444444444 7 7 66 99 7 7 4 1111111 000 7 99 0 7 5555555555555555555 0 7 5 0 2 0 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTT--T----ATT------TTTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTC---AAACA---------TGCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----TTT-------ATT------TTTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTC---AAACA---------TGCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATGA----TTTTTTTTTAATT------TTTCACCA-TGTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCC---AAACA---------TGGTCCAGAAATAGT-GA--TTTTTGGCTTGAA---------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAAAC-CA----------T--------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA----
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAaatttcatgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCATA----------TTATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAAAG-CATAATATATATT--------ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATGA----T----------TT------TTTCACCA-AGTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTC---AAACA---------TGGTCCACAAATGGT-GA------------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATAAC-CA----------T--------ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctaGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATGA----TTT-------ATTCAAATTTTTTACCA-TGTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TCCCTTAGAAATAGT-TAT-TTTT------------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGTTCAAG----ATT------TTTCACTA-TTCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTC---GAAC-----------GCTCCAGAAATAGT-AA--TTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAAAG-CATATTATATATT--------ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATGA----TTTTTTCAAAATT------TTT-ACCA-TGTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG---------------AAACA---------TGCTCCAGAAATATTCAA--TTTT------------------T---------------GCTCAAAtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------G-AAAAA--TCGCATACCGACAAATATGA----TT---------TT------TTTCAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTAC-GTTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCT-CAAAAACGAC-TA------------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCg
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATGA----TTTTTTCAA-AAT------TTTGACCA-TGTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TACTCAAGAAATATT-CATTTTTT------------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGTTCAAG----ATT------TTTTACCA-TGTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTAAC-CA----------T--------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 666666666666666 111 1111 222222222 9999999999999999999999999999999999999999 1111111 111 7777777777777777777 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 888888888888888 3 5 3 0 00 000 0 1 0 0000 222222222 66 6666666666666666666666666666666666666666 5 0 77 77 5 0 0 8888888 000 5 11 1 6 3333333333333333333 1 6 3 1 0 7 1 1 1 1 1 1 5 1 0000 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . ............... . . . . .. ... . . . .... ......... .. ........................................ . . .. .. . . . ....... ... . .. . . ................... . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 777777777777777 4 0 4 2 66 000 7 4 4 7777 999999999 77 4444444444444444444444444444444444444444 7 7 66 99 7 7 4 1111111 000 7 99 0 7 5555555555555555555 0 7 5 0 2 0 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----ATTTTTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTC---AAACA---------TGCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--T------ATTTTTCACCA-TGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTC---AAACA---------TGCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATG--ATTT--TTTTTTAATTTTTCACCA-TGTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCC---AAACA---------TGGTCCAGAAATAGT-GA--TTTTTGGCTTGAA---------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAAAC-CA----------T--------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGAAATTT--C------AT
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCATA----------TTATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAAAG-CATAATATATATT--------ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--AT------------TTTTTCACCA-AGTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTC---AAACA---------TGGTCCACAAATGGT-GA------------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATAAC-CA----------T--------ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctaGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATG--ATTTATTCAA---ATTTTTTACCA-TGTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TCCCTTAGAAATAGT-TAT-TTTT------------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGT--TCAAG--ATTTTTCACTA-TTCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTC---GAAC-----------GCTCCAGAAATAGT-AA--TTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAAAG-CATATTATATATT--------ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATG--ATTT--TTTCAAAATTTTT-ACCA-TGTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG---------------AAACA---------TGCTCCAGAAATATTCAA--TTTT------------------T---------------GCTCAAAtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------G-AAAAA--TCGCATACCGACAAATATG--ATT-----------TTTTTCAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTAC-GTTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCT-CAAAAACGAC-TA------------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCg
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATG--ATTT--TTTCAA-AATTTTGACCA-TGTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTG---AAACA---------TACTCAAGAAATATT-CATTTTTT------------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGT--TCAAG--ATTTTTTACCA-TGTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTAAC-CA----------T--------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 11 555555555 111 111 222222222 9999999999999999999999999999999999999999 1111111 111 7777777777777777777 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 66 1 66 333333333 3 5 3 0 00 000 0 1 0 0 000 222222222 3 66 6666666666666666666666666666666666666666 5 0 77 77 5 0 0 8888888 000 5 11 1 6 3333333333333333333 1 6 3 1 0 7 1 1 1 1 1 1 5 1 0000 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . .. . .. ......... . . . . .. ... . . . . ... ......... . .. ........................................ . . .. .. . . . ....... ... . .. . . ................... . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 77 8 11 333333333 4 0 4 2 66 000 7 4 4 7 000 999999999 0 77 4444444444444444444444444444444444444444 7 7 66 99 7 7 4 1111111 000 7 99 0 7 5555555555555555555 0 7 5 0 2 0 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----A--TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----A--TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATG--ATTT--TTTTTTAA--TTTTTCACCAT-GTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCCAA---ACAT---------GGTCCAGAAATAGT-GA--TTTTTGGCTTGAA---------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAAAC-CA----------T--------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA-AATT--TC-----A--T
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCATA----------TTATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAAAG-CATAATATATATT--------ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--AT--------------TTTTTCACCAA-GTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTCAA---ACAT---------GGTCCACAAATGGT-GA------------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATAAC-CA----------T--------ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctaGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATG--ATTTATTC-----AAATTTTTTACCAT-GTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------CCCTTAGAAATAGT-TAT-TTTT------------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGT--TCAAG--A--TTTTTCACTAT-TCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTCGA---AC-----------GCTCCAGAAATAGT-AA--TTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAAAG-CATATTATATATT--------ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATG--ATTT--TTTCAAAA--TTTTT-ACCAT-GTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG------------AA---ACAT---------GCTCCAGAAATATTCAA--TTTT------------------T---------------GCTCAAAtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------GAAAAA---TCGCATACCGACAAATATG--ATTT--T-----------TTTCAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTACG-TTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCTC-AAAAACGAC-TA------------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCg
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATG--ATTT--TTTCAA-A--ATTTTGACCAT-GTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------ACTCAAGAAATATT-CATTTTTT------------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGT--TCAAG--A--TTTTTTACCAT-GTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTAAC-CA----------T--------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 11 555555555 111 111 222222222 9999999999999999999999999999999999999999 1111111 111 7777777777777777777 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 66 1 66 333333333 3 5 3 0 00 000 0 1 0 0 000 222222222 3 66 6666666666666666666666666666666666666666 5 0 77 77 5 0 0 8888888 000 5 11 1 6 3333333333333333333 1 6 3 1 0 7 1 1 1 1 1 1 5 1 0000 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . .. . .. ......... . . . . .. ... . . . . ... ......... . .. ........................................ . . .. .. . . . ....... ... . .. . . ................... . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 77 8 11 333333333 4 0 4 2 66 000 7 4 4 7 000 999999999 0 77 4444444444444444444444444444444444444444 7 7 66 99 7 7 4 1111111 000 7 99 0 7 5555555555555555555 0 7 5 0 2 0 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----A--TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----A--TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATG--ATTT--TTTTTTAA--TTTTTCACCAT-GTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCCAA---ACAT---------GGTCCAGAAATAGT-GA--TTTTTGGCTTGAA---------A---------------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAAAC-CA----------T--------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA-AATT--TC-----A--T
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCATA----------TTATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAAAG-CATAATATATATT--------ATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--AT--------------TTTTTCACCAA-GTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTCAA---ACAT---------GGTCCACAAATGGT-GA------------------------A---------------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATAAC-CA----------T--------ATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctaGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATG--ATTTATTC-----AAATTTTTTACCAT-GTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------CCCTTAGAAATAGT-TAT-TTTT------------------AGCTAAAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATGAAATGT--TCAAG--A--TTTTTCACTAT-TCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGA-ATGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTCGA---AC-----------GCTCCAGAAATAGT-AA--TTTTGACGTTTATTTGCCTCAAA---------------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAAAG-CATATTATATATT--------ATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATG--ATTT--TTTCAAAA--TTTTT-ACCAT-GTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG------------AA---ACAT---------GCTCCAGAAATATTCAA--TTTT------------------T---------------GCTCAAAtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------GAAAAA---TCGCATACCGACAAATATG--ATTT--T-----------TTTCAAAATTGTT--AC-CATGCCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTACG-TTATTGACCTGTCCGATAGGCTCAAGAAACATTCATTTTTTGCTC-AAAAACGAC-TA------------------------A---------------GTCCGAACG-TTTTTTCGGCACGGGTTGACCg
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATG--ATTT--TTTCAA-A--ATTTTGACCAT-GTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTGAA---ACAT---------ACTCAAGAAATATT-CATTTTTT------------------G---------------CTCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAATGT--TCAAG--A--TTTTTTACCAT-GTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTAAC-CA----------T--------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT
blockSeqs : T G C . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TTTTC CA T AAA T T G TT T G T AA G A GGGT A C A GAAG GA C ACTAC T A TTTTT TGAAGAA AC T A AA T AT TTCAAAA C T C CTA G GAA TCATTTTTT C CA TTTTGACGTTTATTTGCCTCAAA T GG TT T TATAGTC AAA T AC G A TAATATATATT A A T G T A C T A A T G A ACC . AAG T A A A
blockSeqs : . C T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TTTTC CA . AAA T T G . . . . GA G A . . C A AG . . . . . . . . G A AA T . TTCAAA T . G . A . . T G TTTTTAGCTAAAAACAATTAT . GG . . G . . AC G . TATTATATATT A . A T T C
blockSeqs : . T T . TTTTC CA . AAA C A T . . . . GA G A . . C A G . . . . . . . . T A A G . CAAGA C . C . G . . C T TTTTTTG . TC . . G . . CT A . TTATATATA C . T G . C
blockSeqs : . G T . . C . A C A T . . . . TT T A . . C A G . . . . . . . . A A . T . CAAGA C . T . A . . C A TTTTT . TT . . A . . AA G . T A . T
blockSeqs : . C . A T T G . . . . TT G A . . A A G . . . . . . . . G A . T . CAAA G . T . A . . A T A . TC . . G . . AC T . T C . .
blockSeqs : . . . . C G T . . . . GG G A . . C T G . . . . . . . . G T . T . CA T . C . A . . . C A . G . . A . . T
blockSeqs : . . . . . GA G . . . A T G . . . . . . . . A . . G . . . . .
blockSeqs : . . . . TT T . . . C T G . . . . . . . . . . . . . .
blockSeqs : . . . GG . . . . . T A . . .
blockSeqs : . . . TT . . . . T G . . .
blockSeqs : . T G . . .
blockSeqs : G . .
blockSeqCons : TTTTC CA AAA CAAA***** TTTTTGCAAA****************************** TTATATATT**********
originalCons : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TC-----A--TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NA--TTTT------------------A---------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CA----------T--------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
finalCons : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--ATTT--TCAAA-----TTTTTCACCAT-GTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAA---ACAT---------GCTCCAGAAATAGT-NATTTTTGCAAA------------------------------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-CATTATATATT----------ATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 11 222 2222 11111 1111111 222222 11111 111 1111 8888888888888888888888888888888888888888 1111111 111 4444444444 1 3333 1 2222 11
lowQualScore : 8 3 3 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 22 5 111 0 2 1 1 66 3 3 3 0 0 11 8 6 7777 0 3 2 1 9999 44 3 0 88888 4 4 11111 4444444 66 1 2 111111 1 66 66 11111 0 1 3 0 0 2 000 0 1 0 0 1 0 0 6666 8888888888888888888888888888888888888888 5 0 77 77 5 0 0 8888888 000 5 11 1 6 99 1111111111 1 6 3 1 0 7 1 1 1 1 1 1 5 1 0000 5 4444 1 1 66 1
lowQualScore : . . . . ................................................................................................ ..... .. . ... . . . . .. . . . . . .. . . .... . . . . .... .. . . ..... . . ..... ....... .. . . ...... . .. .. ..... . . . . . . ... . . . . . . . .... ........................................ . . .. .. . . . ....... ... . .. . . .. .......... . . . . . . . . . . . . . . .... . .... . . .. .
lowQualScore : 0 2 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 66 7 666 7 2 0 3 11 6 6 6 5 4 55 2 5 7777 5 3 5 8 0000 22 1 8 33333 4 4 11111 4444444 11 9 0 666666 8 11 11 88888 8 1 4 2 4 2 000 7 4 4 7 4 7 7 1111 9999999999999999999999999999999999999999 7 7 66 99 7 7 4 1111111 000 7 99 0 7 22 8888888888 0 7 5 0 2 0 0 0 0 0 0 0 0 0 0000 0 5555 0 0 55 0
consensus : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--A---TTT--T--CA---A-ATTTTTCACCATGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAAACATGCTCCAGAAATAGT-NA-TTTT----------T-G--C---A---------AA---------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-C--AT--TATATATTATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
Reference ( family-217 ) : GTGATTTAATTTTTC-CGCCGCCTCACAGG-CTCCAACCCGAAATTCGGACCCGCTGGCGCCGCCTAGCGGTGAGGACATTGAACCATTTAGGCATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGCTTTTCACGGCATTTTTTT-CAGAAAAAGTCAAAGTTCATCATTTTCAACAAGTTCCACAGACCTTAATATTNGGTCTACAGTTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGTGTAGNTTCTTGTTTTTACCACAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCGACACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCTTTTTGCTGTAGCG--GC--ACGGGGTTCGAACATG-CACGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--A---TTT--T--CA---A-ATTTTTCACCATGTTCCACGCATCCCCGGCACCTTATTCCTAGCACTAGGGAGGTGATTTTTACATCATTCCTTAGGGATTTCCAATGC---CTACAGCCCCCAGAAATCGAACATATCATATACTACGGTTATTGACCTGTCCGGCAGGCTCAAACATGCTCCAGAAATAGT-NA-TTTT----------T-G--C---A---------AA---------GTCCGAACG-TTTTTTCGGCATGGGTTGACCGGTTCGCCAGAGGTCATTAGCCCGATCTCGAACTTTAACNCGGG--TTTTCTGCAAG-GCTTATGGTCAGATAAAGC----G--ATT---GGTGTAA-GAAAAACAATTCGAAAC-C--AT--TATATATTATANTTAGTGA-TGTAGGGTCATTTGAAATTAAGGAAAAACTGGGNTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAACNCGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAANATGTNTNCTTTCTGGATACTACAACCAATACTTTTCAAACNTTTGTCCTTGACCCGTGCGCCACGTNCACGCATGGTANACACACANACATGTCTAAAGAAATTGTTTCTGTGACCACGGGGCTGATTTTCACTACATNATTTAACATATTTTTNATNTANACAATCCGCAC
gi|1 : GTTATTTAATTTTTC-CGCCGCC-CATAAGTCTCCAACCCGGAATTTGGACCCACTGGCGCTGCCTAGCAGTGGAGACA
gi|1 : tagtACAAGTCACGGCATTTCATG----TTTTTT-CACAA---GTCAAAGTTCACCATTTTCAACAAGTTCCACAGACCTTAATATTGGGTCTACAATTCTG--ATTTTG-GTA-CCATT-CTTTAGCGGAACATGTGTAGGTTCTGTTTTTTACAACAAATAATTTC-TAAAAATTCATTAAC----GACCCGTGCGGCACGTGCATACATGATACCTAAGCGCTA-AAATACATTTTAATTATACTATTTTTGCTGTAGCG---C--ACGGGGTTCGAACATG-CATGGGTGGCTGCTGGTAC-----TCGTTCAATTCGTACAGGGGACATCTATGCTCACTCTGGTACCCAGTTTTATGGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAAAATG--A---TTT--T--TTTTTA-ATTTTTCACCATGTTCCACGCATCCCCGGCGCCTTATTCCTGGCACTAGGGAGGTGATTTTTACATCATTCCTTAGCGATTACCAATGC---CTACAGCCCCCATAA-TCAAACACATCATATACTACGGCTATTGACCTGTCCGGCAGGCCCAAACATGGTCCAGAAATAGT-GA-TTTT----------T-GG-CTTGA---------AA---------GTCCGAACG-TTTTTTCGGCATGGTTTGACCCGTTCCCCAGAGGTCATTAGCCCGATTTCAAACTTTAACCCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAAGC----C--ATT---GGTGTAA-GAAAAATAATGCTAAAC-C--AT----------ACACTTAGCGA-TATAGGGTCATTTGAAATTAAGGAAAATCTGGGTTTTGGGCCATTTTCTGACCAAAAACAGCCGTTTTTCATCAATTTCAACACGCTCCAAATTCTTTATTATTTCACATAAACGGCTGATTTTGGTATCATTATTTAGAGAAAAATGTATTCTTTCTGGATACTACAACCAATACTTTTCAAACCTTTGTCCTTGACCCGTGCGCCACGTGCACGCAT-GTACACAC-TAAATATGTCTAA--AAATTGTTTCTGTGACCACGGGGCTGATTTTCACTATATAATTTAACATATTTTTTATCTACACAATCCACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggacaacaagtcacggcatttcatgttttttcacaagtcaaagttcaccattttcaacaagttccacagaccttaatattgggtctacaattctgattttggtaccattctttagcggaacatgtgtaggttctgttttttacaacaaataatttctaaaaattcattaacgacccgtgcggcacgtgcatacatgatacctaagcgctaaaatacattttaattatactatttttgctgtagcgcacggggttcgaacatgcatgggtggctgctggtactcgttcaattcgtacaggggacatctatgctcactctggtacccagttttatgggttccgataagtattttcgaaaaaatcgcataccggcaaaaatgatttttttttaatttttcaccatgttccacgcatccccggcgccttattcctggcactagggaggtgatttttacatcattccttagcgattaccaatgcctacagcccccataatcaaacacatcatatactacggctattgacctgtccggcaggcccaaacatggtccagaaatagtgatttttggcttgaaagtccgaacgttttttcggcatggtttgacccgttccccagaggtcattagcccgatttcaaactttaacccgggttttctgcaaggtttatggtcagataaagccattggtgtaagaaaaataatgctaaaccatacacttagcgatatagggtcatttgaaattaaggaaaatctgggttttgggccattttctgaccaaaaacagccgtttttcatcaatttcaacacgctccaaattctttattatttcacataaacggctgattttggtatcattatttagagaaaaatgtattctttctggatactacaaccaatacttttcaaacctttgtccttgacccgtgcgccacgtgcacgcatgtacacactaaatatgtctaaaaattgtttctgtgaccacggggctgattttcactatataatttaacatattttttatctacacaatccacac
gi|10 : tagtgttatttaatttttccgccgcccataagtctccaacccggaatttggacccactggcgctgcctagcagtggagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggaca--ATTGTT-GTA-CCATT-CTTTAGCGGAATATGTGTTAATTCATGTTTTAACCACAAATAAGTTTGCAAAG-TTCATTAAC----AACCCGTGCAATACGTGTAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGATAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATGTCGTACCCAGATTGATG
gi|11 : TTTG-GTAGCCATT-CTTTAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCAAAA-TTCATTAAC----GACCCGTGCAATACGTGCAAACATAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCCAGATTGATG
gi|12 : g-GTA-CCATT-CTTAAGCGGAATATGTGTTGATTCTTGTTTTAACCACAAATAAGTTTGCTAAA-TTCATTAAC----AACCCGTGTAATACGTGCAAACATAGTACCTAAGCACAA-AAATCAATTTTATTTTCACTCATTGTGCTGTAGC---GC--ATGGGGTTCGAACATA-CACGGTTGATTATTGGTAG-----TTGTGTAATTCGTACAGGGGACATCTAGGAACAATCTCGTACCCAGATTGATG
gi|13 : TCACGGCTTTTCACAG--TTTTTTT-TAGAAAAAGTCAAATTTCATCATTTTCAACAAGTTCCACAAAATTCAATACATGGTCTACAGGTCTGTTATTTTT-GTA-CCATT-CTTTATCTGAACATGTATATTGTCTTGTTTTTACCACAAATAGTTTT-CAAAAAAATATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAA
gi|14 : caagtattaCCGTAGCG---C--ACATACTTCCAACATG-CACGGAT-GTTGTTGGTAAACTACTTGTTAAAATCGTACAA-------------ACACTCTGATATACAGATTAGTAGGTTCCAAT-AAG-TA-----TTTTTTGAAGAAGAAAAAAACTCTCAT--CTGCAAATATGA-A---ATT--T--CA---
gi|15 : aaaatttaacttattaagtatgtctgaatatctgaTTACACAGAC--------TTGGTCTACAGGTCTG--TTTTTTTGTA-CCATTTCTTTATCTGAACATGTTTATTGTCTTGTTTTTACCACAAATAGTTTTTAAAAAAAT-ATTAAT----GACCCGTGCGACACGGCCAAACATAGAACCTAAACGCAG-AAtgat
gi|16 : aaactATTAGCCTGGTCTGGAACTTTAACGGTGT--TTTTCTGCAAATGCTTATGGTTAGATAAAGC----G--ATT---GATGTAA-GAAAAACAATTCGAAGCAT--AT--TATATATAATAATTAGTGA-TGTAGTGTCATTTGAAATTAAGGAAAA
gi|17 : tcaATTAGCCTGACCTGGAACTTTAACGGCGT--TTTTCTGCAAT-GCTTATGGTTAGATAAAGT----G--ATT---GGTGTAA-GAAAAACAATTCGAAAG-C--ATAATATATATTATGATTAGTGA-TGAAGTGTCATTTGAAATTAAGGAAAAA
gi|18 : aAATTTTATTTTCACTCATTTTGCTGTAGTG---C--ATGGGGTTCGAACATA-CACGGTTGGTTATTGGTAG-----TCGTGTAATTCGTACAGGGGACATCTAGGTACAATCTCGTACCAAGATTGATG
gi|19 : TCACGGCTTTTCACAGC--TTTTTT-TAGAAAAAGTCAAATTTCTTCATTTTCAAAAAGTTCCACAGACTTTA
gi|2 : caagtattaGTCATTTAATTTGTC-CGTGGCCCCTAAGG-CTCCAACGCGAAACTCGGACCCGCTGGCACCGCTTAGCGAAGAGGACATTGAACCATTTAGGCATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAA---GTCAAAGTTCATCATTTTCAACAAGTGCCACAGACCTTAATATTAGGTCTACTATTCTG--ATTTTT-GTA-CCATT-CTTTAACGGAATATGTGAAGGTTCTTGTTTTTACCATAAATAATTTTGCAAAAATTCATTAAC----GACCCGTGCAGCACGTGCAAACAAAGTACCTAAGCGCAG-AAATCAATTTTATTTTCACTCATTTTGCTGTAGCGAAGCGAACGGTGTTCGAACATA-CACGGTTGATTGTTGGTAG-----TCATTCAATTCGTACAGGGGACATCTAGGTACACTCTGGTACCCAGATTGATGGGTTCCAAG-AAG-TA-----TTTTC-------GAAAAAA--TCGCATACCGGCAAATATG--A---T---------------TTTTTCACCAAGTTCCATGCATCCCCGACACCTTATTCCTAGCACTAAGGTAATGATTGTTATATAATTCCTTAGGGATTTTCAATGC---CTACAGTCCCCATAAATCGAACAT---ATATGCTACGGTTATTGATCTGTCCGGCAGGCTCAAACATGGTCCACAAATGGT-G-----------------------------------AA---------GTCCGAACGTTTTTTTCGGCATGGGTTGACCGGTTCGACAGAGGTCATTAGCCCGATCTCGAACTTGAACTCGGG--TTTTCTGCAAG-GTTTATGGTCAGATAAATC----A--ATT---GGTGTAA-GAAAACTAATTCATAAC-C--A----------TATACTTAGGGA-TTTAGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCAGACCAAAAA-AGCTGTTTTTTATCGATTTCAACACGTTCCAAAATCTTTATTAATTCACATAAACGGCTGATTTTGGTATCATTATTTAGAAAAACATGTTTATTTTCTGGATATTACAACCAATACTTTTCAAACATTTGTTCTTGACCCGTGCGTCACGTTCACGCATGGTAAACACAC-CACAT-TCT-AAGAAATTGTTTCTATGACCACGGGGCTGATTTTTACTACATTATTTAACATATTTTTAATA-AAACAATCCGTAC
gi|20 : AAATTAAGGAAAAACTTGGTTTTTGGCCACCTTCGGACCAAAAATATCTGTTTTTCATCAATTTCAACCCGTTC
gi|21 : GTGATTTAATTTTTC-CGTCGCCTCACAGT-GTCCAACCCGAAATTGGTACCAGCTGGCGCCGCCTAGCGGTGAGttt
gi|22 : t---------AA---------GTCCGAACG-TTTTTTCGGCATGGGTTGACCa
gi|3 : ctGTGATTTAATTTTTC-CGTTGCTTCACAGG-CTCCAACCCAAAATTCAGACCCACTGGCACTGCTTAGCTGTGAGATGATTGAACCATTTAGGCATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCACGGC-----ACGGCATTTTTTT-CAGAAA---TCAAAGTTCATTATTTTCAACAAGTTCCACAGACCTTAATATTAGGTCTACAATTCTG--ATTTTT-GTA-CCATT-CTTTAGCGGAACATGAATAGATTCTTGTTTTTACCACAAATAAATTTGTAAA--CTCGTTAAA----GACCAGTGCAGCACGTGCAAACATAGTACCTAAACGCAG-AAATAAATTTTATTTTTACTCTTTTTGCTGAAG-A--GC--CTGGTGTTCAAACATG-CATGTGTGGTTGTTGGCAG-----TCATTCAATTCGTACAGTGGACATATAGGTACACTCTGATATCCAGATTGATGGGTTCCGATTAAG-TA-----TTTTC-------GAAAAAA--TCTCATACCAACAAATATG--A---TTTATT--CA---A-ATTTTTTACCATGTTCCATGCATCCGGGGCACCTTATTCCTAGCGCTAATGAGATGATTGTTACATCATTTCTTAGGGATTTCCAATGA---CTACAGTCTACAGAAATCAAACATATCATATACTACAGTTATTGACCTGTCCGGTAGGCTGAAACATCCCTTAGAAATAGT-TA-TTTT----------TAG--CT--A---------AAAACAATTATGTTCGAACG-GTTTTTTGGCATGGGTTGACCGGTTTGCCAGAGGTCATTAGCCCGATCTCGAACTTTTACTTGGG--TTTTCTACAAG-GTTTAT----AAATAAAACTATAGTCATTAAAGGTCTAATGAAAAAAAA
gi|4 : aagtTCACGGCTTTTCACGGC-TTTTTTT-TAGAAAAAGTCAAATTCCATAATTTTCAAAAAGTTCCACAGACTTCAATATTTGGTCGACAGGTCTG--TTTTTT-GTA-CCATT-CTTTATCGGAACATTTTTATTTTCTTGTTTTTACCACAGATAGTTTT-TAAAAATATATTAAA----GACCCGTGAGACACGGACAAACATAGAACCTAAACGCAG-AAATCAATTTTATGTTCACTATTTTTACTGTAGCG---C--ACGTGCTTCAAACATG-CACATGTGGTTGTTGGTAC-----TCCTTCAATTCGTACAGGGAACATCTAGGTACACTCTGATATACAGATTGATAGGTTCCGAT-AAG-TA-----TTTTC-------GAAAAAT--TCACACACCGGCAAATATG--AAA-TGT--T--CA---AGATTTTTCACTATTCGCCACGCATCTCCGGGACCACATCGGTAGCACTAGGGAA-TGAGTTTTACATCATTCATTAGAAAAACCCAATGC---CAACATCCACTATCAATCGGATATATCATATACTACGGATATTGCCCTGTCCGGCATGCTCGAAC--GCTCCAGAAATAGT-AA-TTTTGACGTTTATTT-G--CCTCA---------AA---------GTCCGAACG-TTTTTACGGCAATGTTCGACCGGCTCGCCTTAGGTCATTAGCCTGGCCGGGAACTTTAACG-GTGTTTTTTCTGCAAT-GCTTATCGTTAGATAAAGC----G--ATT---GATGTAA--AAAAACAATTCGAAAG-CATAT--TATATATTATAATTAGTGA-AGTAGGGTCATTTGAAATTAAGGAAAAAaaac
gi|5 : caagtattaGTGATTTAATTTTTTTCGCGACCTCACAGG-CTCCAACCCGAAACTCGGACCCACTGTCGCCGCCTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTACAAGTCGCTGC-----ACGGCATTTTTTTTCCGAAA---TCAAAGTTCATCATTTTCAACAAGTTCCACATACCTTAATATTGGGTCTACAATTCTG--ACTTTT-GTA-CCATT-CTTTAGCGGAACATGTACAGGTTCTTGTTTTTACCACAAATAATTTTGC-CGAATTCATTAACGGGTGACCCGTTCAGCACGTGCAAACATAGTACCTTAGCGCAGAAAATAAATTTTA-----ATTGTTTTTGCTGTGGC---AC--AC-GAGTTCGAACATGCCAC-GGTGGTTGTTGGTaacactacgtacaa
gi|5 : agaGGTTGATGGGTTCCGAT-AAG-TA-----ATTTC-------GAAAAAA--T---------------ATG--A---TTT--TTTCA---A-AATTTTTACCATGTTCCACGCATCCC-GGCACATTATTCCTAGCATTAGGGAAGTGATTTT-ACATCATTCTTTAGGAATTTCCAATGC---CTACAGTCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTG------------AAACATGCTCCAGAAATATTCAA-TTTT----------T-GCTC---A---------AA---------Gtgatgggttccgataagtaatttcgaaaaaatatgattttttcaaaatttttaccatgttccacgcatcccggcacattattcctagcattagggaagtgattttacatcattctttaggaatttccaatgcctacagtccccagaaatcaaacatatcatatactacggttattgacctgaaacatgctccagaaatattcaatttttgctcaaag
gi|6 : agagtgatttaatttttttcgcgacctcacaggctccaacccgaaactcggacccactgtcgccgcctagcggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctctacaagtcgctgcacggcattttttttccgaaatcaaagttcatcattttcaacaagttccacataccttaatattgggtctacaattctgacttttgtaccattctttagcggaacatgtacaggttcttgtttttaccacaaataattttgccgaattcattaacgggtgacccgttcagcacgtgcaaacatagtaccttagcgcagaaaataaattttaattgtttttgctgtggcacacgagttcgaacatgccacggtggttgttGCAT-AAAT-AATTTTATTTTCACTCTTTTTTCTGTAGTG---C--ACGGGGTTCGAACATG-CATGGGTGGTTGTTGGTAG-----TCGTTCAATTCGTACAGGGGTCATCTAGGTTTACTCTGATACCCAGATTGATGGGTTCCGAT-AAGATT-----TTTTT-------G-AAAAA--TCGCATACCGACAAATATG--ATTTTTT--T--CA---A-AATTGTTACCATG-----------CCTGGCAGCTTATTCCTAGCACTGTGGAGGTGATATTTATATCATTCCTTAGGGATTTCTAATGA---ATACAGCCCCCAGAAATCAAACATATCATATAGTAC-GTTATTGACCTGTCCGATAGGCTCA----------AGAAACATT-CATTTTT----------T-GCTC---AAAAACGACTAA---------GTCCGAACG-TTTTTTCGGCACGGGTTGACC
gi|7 : tttggttAATTTTATTTTCACTCTTTTTGCTGTAGCG---C--ACGAGGTTCGAACAAG-CATGGGTGGTTGTTGGTAG-----TCGTTCAACTCGTACAGGGGACATCTAGGTACACTCTGATACCCAGATTGATGGCTTCCGAT-AAG-TATTTTTTTTTT-------TAAAAAA--TCGCATACCGGCAAATATG--ATT-TTT--T--CA---A-AATTTTGACCATGTTCCACGCATCCCTGACACCTTATTCCTAGTACTATGGAGGTGATATTTACACCATTCCTTAGGGATTTCTAATGCCTACTACAGCCCCCAGAAATCAAACATATCATATACTACGGTTATTGACCTGTCCGGTAGGCTGAAACATACTCAAGAAATATT-CATTTTT----------T-G--C-------------------------TCCGAACG-TTTTTTCAGTATGGGTTGACC
gi|8 : tTG--TTTCTT-GTA-CCATT-TTTTATCGGAACATGTATATTTTCTTGATTTTACCACAAATAGTTTTTTAAAAAAATAATAAG----GACCCGTGCGACAAAGCCAAACATAGAACCTAAACGCAG-AAATCAATTTTATTTTCACTCTTTTTACTGTAGC---GT--AAGTGCTTCAAACATG-CACATGCGGTTGTTGGTAC-----TCCTTCAACTCGTACAGGGAACATCTAGGTGCACTATGATATACAGATTGAT------------AG-TA-----TTTTC-------GAAATAA--TCACACTCCGGCAAATATGAAA---TGT--T--CA---AGATTTTTTACCATGTGCCACGCATTTCCGGGACCTTATCGGTAGCACTAGGG-GATGAT
gi|9 : CGTTTCGACAGATGTCATTAGCCCGATCTCGAACATAAACTCGGG--TTTTCTGCAAG-GTTTATGGTCTGATAAAGC----A--ATT---GGAGTAA-GAAAA-TAATTCTTAAC-C--AT----------ATACTTAGTGAATA-AGGGTCATTTGAAATTAAGGAAAAACTGGGGTTTTGGCCACTTTCGGACCAAAAATAGCTGTTTTTCATCAATTTCAATCCGTGACCAAATCTTTATTAATTCACATAAACGGTTTAATTTGGTATCATTATT