lowQualScore : 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 22222222 22222222 1 555555 33333 111 111 11111111 333333333333333333333333333 111 2222222222 2222 1 1111 1 1 1 3333333333333333333333333 11 99999999999999999999999999999999999999999999999999999999999999999999999 444444444444444 222 88888888888888 55555555 1 4444 11 1111111 1 11 2 99999999999999999999999999 1 11 2 44444
lowQualScore : 7 6 3 33 44444444 22222222 777 4 9 88 5 4 88 0 55 4 666666 6 7 6 8 00000 3 1 8 3 5 999 22 888 88888888 5 5 5 222222222222222222222222222 5 000 4444444444 5 5 5 9999 3 6 9999 5 55 0 3 4 4444444444444444444444444 3 33 77777777777777777777777777777777777777777777777777777777777777777777777 0 111111111111111 22 777 8 55555555555555 88 11111111 6 5 6 0000 6 11 2 1 8888888 5 88 9 0 0 7 00000000000000000000000000 7 6 99 0 6 00000 3 4 3 2 2 6 6
lowQualScore : . . . .. ........ ........ ... . . .. . . .. . .. . ...... . . . . ..... . . . . . ... .. ... ........ . . . ........................... . ... .......... . . . .... . . .... . .. . . . ......................... . .. ....................................................................... . ............... .. ... . .............. .. ........ . . . .... . .. . . ....... . .. . . . . .......................... . . .. . . ..... . . . . . . .
lowQualScore : 8 4 5 22 66666666 99999999 000 0 6 88 2 3 00 1 55 0 666666 3 0 0 9 44444 4 0 0 1 0 555 22 444 11111111 0 0 0 999999999999999999999999999 7 222 9999999999 7 7 7 3333 3 7 2222 2 88 0 0 3 0000000000000000000000000 8 00 11111111111111111111111111111111111111111111111111111111111111111111111 6 222222222222222 22 888 0 55555555555555 22 88888888 0 0 0 5555 0 00 5 2 0000000 0 33 0 3 7 3 88888888888888888888888888 0 0 55 0 0 00000 0 0 0 5 5 0 0
consensus : AAATANAGGTAAATGTTTT-GCA-NTTTTTTGTGTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAG-T---GCTTGAGGTGAAGGA-CCATGTTTACATGCTTCATACATAT-GGCGAATAATGGCACNTTTT--------AT-GGAAA-T-TATAT--------CGGT---------------AGACCAAA-T--CACA---A-----AT-CAAACA-TTTGG-ATG---CTGACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGAC-NA-TANA-----TGA-NTTNCAGTTTTATNAN-TGAAA-GCCATCCCCC----ATGN-----------ATATATTATAT--AA--ACTGGCTTACACAAG--C--TTTCCAACACATAGGTTATACATGA-CACCAAGTTTCATTGGCCAAGG-AAGATCCT----GCATTCTTGCGNATATTACATT-N-----AGTTGTTATTGACA--AAAAGATCTAAGATGCATACA--CGTGCCCGAGTTACTAAGAACCA--CTGTAAGTAATAG-AATAATA-AT--AGTTGAAGGNNACAAGATNCCTCATTGGAACGACNATACCCCACCATGAGGCCCTCAAATAACAANCAAACTNGCTTNGNGAAAATNTTTNATCCAAACTGGATCTGAACC
Reference ( gi|2 ) : AAACACAGGTAAATATTTT-ACA-ATGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGAT--AACTTAAAGTGAAGAA-CACTATTTGCATGTTTCGTACACAT-GCCGAATAATGGCGCTTTTT--------AT-GGAAA-T-TATAT--------CAG----------------AGACCAAA-T--CACT---A-----AT-CAAACA-TTTGG-AT----CTGGCTGTTTCAATGTGTC---TATTATCATTTTCATCACAATCTGGGC-TA-TAAA-----TGA-ATTACAGTTTTATAAC-TGAAG-G-------------ATGA-----------ATATAT-------AA--ACTTGCTTACACCA------TCTCCAACACATAGGTTTTACATGA-AACCAAGTTTCATTAGACAAGG-AAGACCTTATGTGCATATTTGTGTATATTACATA-A-----AATTGTTACTGACAGAAAAAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACCCA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAGTC---TGA-AC-TCAATAGAACAATTATATCT-ACCATGAGGCCCTCAGATAACAAACAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACA-------------TTGTTCA-------GAGATA---AT-GCAAACGG-------------TCTTTCCAATCACACAGG-TAGCAGAT--TGCTTCAGATGAAGGA-CCATATTTACATGTTTCATACACAT-GGCAAATAATGGCACCTTTT--------GT-GGAAA-TATATAT--------AGA----------------AGACCAAA-T--CACA---A-----AT-CAAACA-TTTGG-ATACCCTTGACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNN-----NNN-NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNTCCATAC-----------ATGTATATTAT--AG--ACTGGCTTACA--A------T-TACACCACA-------TACATGA-CACCAAGTTATATTGGCCAAGG-AAGACCTTATGTAC----TTGTCAATATTACATGTACATCCAGTTGTTATTGACAAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAACTACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|10 : taAAAAAGAGATAAATATTTT-GCATATTTTT-GTGTGTCGTTTA----T-----ATG---A--GTTAACAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG------TTTGAGGTGAAGGGTCATT-TTTACATGCTTCATATGTAT-GGTGAATAAAGGAACATTTT--------AT-GGAAA-T-T
gi|8 : AATAAAGGTGAATGTTTTTGCA-TTTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG------TTTGAGGGGAAGGA-CCATGGTTACATGCGTCATACATAT-G--GCATA--------TTTT--------AG-AGAAA-T-TATGTTACTTAA-CAGATACAATTGAATCTGTAGACCATA-T--GATA---A-----AT-TAAACA-TTTGG-ATG---CCGACTGATTCAATGTGTG---TATTACCATTTACAGCACATTCCAGAC-ccataacttaaatataaaaatgctaaat
gi|12 : AATATAGGTAAATGTTTT-CCA-TTTTTG-GTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTGTTT--CCCATCATA--GG-TAGCAGTTTGCACT----GTGAGGGA-CCATGTTTGCATACTTCATATA
gi|14 : AATATAGATAAATGTTTT-CCT-ATTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGt
gi|6 : GGTCAATGTTTT-GCA-TTTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG------TTTGAGGTGAAGGA-CCATGTTTACATGCTTCAAAAATAT-GGTGAATAATGGCACATTTT--------AG-AGAAA-T-TAAAT--------CTGT---------------AGACCACA-T--GACA---A-----AT-TAAACA-TTTGG-ATG---CGGACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTACAC-CAGTACA-----TGG-TTTTCAGTTTTATAAT-TGAAACGCCATCCCCC----ATG-------------CATAT-------AA----TTA-TTATATAAGAAC--TTTCCAATGCATAGGTTATAtt
gi|5 : A-ATGTTTTGTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG------TTTGAGGCAAAGGA-CCATGTTTACATGCCTCATACCTAT-GGTGAATAATGGCA-TATTT--------AG-AGAAA-T-TTTGTAACTTAAACAGTACAAATAAATCTGA-AGACCAAA-TGACATTTTAA-----AT-TAAACA-TTTGGAAG----CTCACTGATTTAATGTGTTCAGTATTACCA--TACAGCACATTCTAGAC-AA-CACA-----TG
gi|11 : aaaatgaaggta----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGAT--TGCTTAAGGTGAAGGATCA-TATCTACATGTTTCATACATAT-GGCAAATAATGGCATACTTT--------AT-GGAAATT-TATAT---------AGT---------------AGACCAAA-gtattccatatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|1 : ttAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG------TTTGAGGTTAAGGA-CCATA-TTGCATGCTTCTCACAAATGGCTTCACAACTGCACTTTTTTTTCAAAAATAAGTAA-C-TAAAT--------CTGA---------------AGACCAAA-T--TACA---A-----AT-TAAATA-TTTGG-AT----c
gi|16 : gAGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGGgctcagactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttatattatataagaactggcttacacaatttccaacacatttccacctagtttcattggcaaggcaagatcctgcattcttgcatatattacattcagttttattgacaaacgatctaagagttatacagtcatgtgagcagagccactgttagcaatagatattagatattaaagatgagatacctcattggaatgatttaccccaccatgaggccttcaaataacaaccaaacttgctttgtgaaaatattttatccaaactggatctgaaccataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|4 : ATCACA--GGGTAGCAGAT--TGCCTGAGGTGAAGGA-C--------CATATTT-----ACA---------------G-TTGTC--------AT-GGAAA-T-TATAT--------GGT----------------AGACCAAAAT--CACA---ACACAAAT-CAAACA-TTTGG-ATA---CTGACTGATTCATTGTACT---TATTACCAATTTCAACACATTCCAGGC-TA-TGAT-----TGA---TACTGATGGATGACCTGA---G-------------ATGT-----------ATATATTAT----AG--ACTGGTTTACA--A------T-TACACCACATAGGTTATATATGA-CACCAAGTTTCATTGGCCAAGG-AA-------------------TGAATATTACATC-A-----AGTTGTTATTAAC---AAAAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAG
gi|7 : ccttgctaT---A-----ATGCAAACAGTTTGG-GA----TTAG-----TCAATGTGTT---TTTTACTATGTACAGAACATTCTAAAAATA-TAAAAATAATGATATT-CAGTTTTATTAG-TGAAA-G-------------GTGACCTCAAGATGCATACATTAAATAAGA--ACAGGCTTACACCAGGTCCATTTCCAACACAT----TTCA-------ACCTAGTTTCACTGTCCAAGC-AAGATCCT----GCATTCTTGCATACATTACATT-C-----AGTT-TTATTGACA---AAAGATCTAAGATGCATACA--tacttttctgtaa
gi|1 : TATAT-------AAGAACTGGCTTACACAA------TTTCCAACACAT-----TTCCA------CCTAGTTTCATTGG-CAAGGCAAGATCCT----GCATTCTTGCATATATTACATT-C-----AGTT-TTATTGACA---AACGATCTAAGAGTTATACAGTCATG--TGAGC-----AGAGCCA--CTGTTAGCAATAG--ATATTAGAT--A-TTAAAGATG---AGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAACAACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACCgtcatgtgagcagagc
gi|5 : gagataatgcaaacagttttggattggtatctttcccatcacaggtagcagtttgaggttaaggaccatattgcatgcttctcacaaatggcttcacaactgcacttttttttcaaaaataagtaactaaatctgaagaccaaattacaaattaaatatttggatgctcagactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcttatatATATAGGTTATACATGGCAACCA-GTTTCATT-GCCAAGA-AAGataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|9 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaacacatggtattccatatactAAGATGCATACA--CATGCCTGA---AC--ACAACCA--CTGTAAGTAATATAAGT-ATA-AA--AAT--AAGGACACAAGA-CC-TCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAACAAA----CTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC
Alignments
lowQualScore : 11 444444 222222222222 11111111 333333333333333333333333 1111 22222222222 111111 1111111 111 77777777777777777777777 1111 11 55555555555 111 11111 222222 1 222 11 111111 2 1 11 33333333333 1111 1
lowQualScore : 1 88 22 9 9999 666 3 0 55 3 222222 55 1 666666666666 66 66666666 4 777 4 4 666666666666666666666666 3333 5 3 11111111111 5 5 3 444444 888 2 1 5 1 8888888 333 1 0 1 1 22222222222222222222222 1 4444 3 88 88888888888 000 5 999 8 3 1 3 1 6 1 88888 6 22 333333 33 0 111 11 0 99 6 5 66 444444 1 0 7 0 33 6 33 99999999999 0 999 4444 4 1 1 1 1 1
lowQualScore : . .. .. . .... ... . . .. . ...... .. . ............ .. ........ . ... . . ........................ .... . . ........... . . . ...... ... . . . . ....... ... . . . . ....................... . .... . .. ........... ... . ... . . . . . . . ..... . .. ...... .. . ... .. . .. . . .. ...... . . . . .. . .. ........... . ... .... . . . . . .
lowQualScore : 0 44 88 2 4444 444 6 5 00 6 111111 55 4 444444444444 11 11111111 4 888 4 4 666666666666666666666666 9999 0 0 55555555555 0 0 4 555555 888 9 0 7 0 6666666 333 0 9 0 0 00000000000000000000000 0 2222 5 33 77777777777 000 7 999 7 2 5 7 0 7 8 44444 2 44 000000 22 0 666 00 8 22 4 6 22 666666 2 0 0 0 88 5 55 77777777777 7 000 7777 0 0 0 0 0 0
consensus : AAATANAGGTAAATGTTTT-GCA-TTTTTTGTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGA-T--CTTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGTAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNANTGAAA-GNCGNCCC----CC---A--TGCATATA----TTATATAA--ACTGGCTTACACAA------T-TTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AAGACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCCGAGTTACTAAGAAC--CA--CTGTAAGTAATAGCAATAATA-AT--AGTTGAAGG-CACGAGA--CCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAACAA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
Reference ( family-2164 ) : AAATANAGGTAAATGTTTT-GCANTTTTTTGTGTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAG--T-GCTTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCGGTAGACCAAA-TCAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNANTGAAA-GCCATCCC----CC---A--TGNATATA----TTATATAA--ACTGGCTTACACAAG---C-T-TTCCA---AC-ACATAGGTTATACATGACACCAAGTTTCATTGGCCAAGG-AAGATCC----TGCATTCTTGCGNATAT------TACATTNAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCCGAGTTACTAAGAAC--CA--CTGTAAGTAATAG-AATAATA-AT--AGTTGAAGGNNACAAGATNCCTCATTGGAACGACNATACCCCACCATGAGGCCCTCAAATAACAANCAAACTNGCTTNGNGAAAATNTTTNATCCAAACTGGATCTGAACC
gi|1 : GAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG--T---TTGAG--GTTAAGGACCATATT-GCATGCTTCTCACAAATGGCTT----------CACAACTGCACTTTTTTTTCAAAAATAAGT---AA-C-T--------------------AA--ATCTGAAGACCAAA-TTAC-----A-----AAT-TAAATA-TTTGGATGC---TCAGACTGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNN----NN---NN-TGCTTATA----TTATATAAGAACTGGCTTACACAA------T-TTCCA---AC-ACAT---TT---C----CACCTAGTTTCATTGGC-AAGGCAAGATCC----TGCATTCTTGCATATAT------TACATTCAGTT-TTATTGAC--AAA--C-GATCTAAGAGTTATACAGTCATGT--GAGC-----AGAGC--CA--CTGTTAGCAATAG-A-TATTAGAT--A-TTAAAG---ATGAGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAACAACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACC
gi|10 : AAAAAGAGATAAATATTTT-GCATATTTTTGTGTGTCGTTTA----TATGAGTTA---A-------CAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG--T---TTGAG--GTGAAGGGTCATTTTTACATGCTTCATATGTATGGTG-----------AATAAAGGAACATTTT--------ATG-GA---AA-T-T--------------------ataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|11 : ----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGATT-GCTTAAG--GTGAAGGATCATATCTACATGTTTCATACATATGGCA-----------AATAATGGCATACTTT--------ATG-GA---AATT-T--------------------AT--AT-AGTAGACCAAA-ccataacttaaatataaaaatgctaaat
gi|12 : ttAATATAGGTAAATGTTTT-CCA-TTTTTGGTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTG--TTTCCCATCATA--GG-TAGCAG--T---TTGCACTGTGAGGGACCATGTTTGCATACTTCATATATc
gi|14 : AATATAGATAAATGTTTT-CCTATTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTT
gi|16 : AGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGG
gi|2 : AAACACAGGTAAATATTTT-ACAATGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGA-TAACTTAAA--GTGAAGAACACTATTTGCATGTTTCGTACACATGCCG-----------AATAATGGCGCTTTTT--------ATG-GA---AA-T-T--------------------AT--ATCAG-AGACCAAA-TCAC-----T-----AAT-CAAACA-TTTGGAT-C---T--GGCTGTTTCAATGTGTC---TATTATCATTTTCATCACAATCTGGGCTA-TAAA-------TGA-ATTACAGTTTTATAACTGAAG-G----------------A--TGAA---------TATATAA--ACTTGCTTACACCA------T-CTCCA---AC-ACATAGGTTTTACATGAAACCAAGTTTCATTAGACAAGG-AAGACCTTATGTGCATATTTGTGTATAT------TACATAAAATTGTTACTGACAGAAA--AAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACC--CA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAGTCTGAA-----CTCAATAGAACAATTATA-TCTACCATGAGGCCCTCAGATAACAAACAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACA------------TTGTTCA-------GAGATA---AT-GCAAACGGT-------------CTTTCCAATCACACAGG-TAGCAGATT-GCTTCAG--ATGAAGGACCATATTTACATGTTTCATACACATGGCA-----------AATAATGGCACCTTTT--------GTG-GA---AA-TAT--------------------AT--ATAGA-AGACCAAA-TCAC-----A-----AAT-CAAACA-TTTGGATACCCTT--GACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNTCC---A--TACATGTA----TATTATAG--ACTGGCTTACA-A---------TTACA---CC-AC-------ATACATGACACCAAGTTATATTGGCCAAGG-AAGACCT----TATGTACTTGTCAATATTACATGTACATCCAGTTGTTATTGAC--AAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAAC--TACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|4 : taCTTGCTAATCACA--GGGTAGCAGATT-GCCTGAG--GTGAAGGAC-------------------CATAT--------------------TTACAGTTGTC--------ATG-GA---AA-T-T--------------------AT--AT-GGTAGACCAAAATCAC-----AACACAAAT-CAAACA-TTTGGATAC---T--GACTGATTCATTGTACT---TATTACCAATTTCAACACATTCCAGGCTA-TGAT-------TGA---TAC----TGATGGATGA----------C----CTGAGA--TGTATATA----T--TATAG--ACTGGTTTACA-A---------TTACA---CC-ACATAGGTTATATATGACACCAAGTTTCATTGGCCAAGG-AA-------------------TGAATAT------TACATCAAGTTGTTATTAAC---AA--AAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAGTACTTTT--CTGTAA
gi|5 : cAAATGAAGGTAAATG-----------TTTTGTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG--T---TTGAG--GCAAAGGACCATGTTTACATGCCTCATACCTATGGTG-----------AATAATGGCATA-TTT--------AGA-GA---AA-T-TTTGTAACTTAAACAGTACAAATAAATCTGAAGACCAAA-TGACATTTTA-----AAT-TAAACA-TTTGGAAGC---T--CACTGATTTAATGTGTTCAGTATTACCA--TACAGCACATTCTAGACAA-CACA-------TGGTATTCCA
gi|5 : aACACATG---G-TATTCCATATACTATATAGGTTATACATGGCAACCAGTTTCATT-GCCAAGA-AAGtatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|6 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaGGTCAATGTTTT-GCATTTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG--T---TTGAG--GTGAAGGACCATGTTTACATGCTTCAAAAATATGGTG-----------AATAATGGCACATTTT--------AGA-GA---AA-T-T--------------------AA--ATCTGTAGACCACA-TGAC-----A-----AAT-TAAACA-TTTGGATGC---G--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTACACCAGTACA-------TGG-TTTTCAGTTTTATAATTGAAACGCCATCCC----CC---A--TGCATATAATTATTATATAA--G------------AA---C-T-TTCCA---AT-GCATAGGTTATA
gi|7 : -----AATGCAAACAGTTTGG----------GATT-AGTCAATGTGTT---TTTTACTATGTACAGAACATTCTAAA-AA-TATAAAAATAATGA-TATTCAGTTTTATTAGTGAAA-GGTGACCT----CA---AGATGCATACA----TTAAATAAGAACAGGCTTACACCAGGTCCAT-TTCCA---AC-ACAT---TT---CA----ACCTAGTTTCACTGTCCAAGC-AAGATCC----TGCATTCTTGCATACAT------TACATTCAGTT-TTATTGAC---AA--AAGATCTAAGATGCATACA--
gi|8 : tAATAAAGGTGAATGTTTTTGCATTTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG--T---TTGAG--GGGAAGGACCATGGTTACATGCGTCATACATATGGCATATTTTAGAGAAATTATGTTAC--TTA--------ACA-GATACAA-T-T--------------------GA--ATCTGTAGACCATA-TGAT-----A-----AAT-TAAACA-TTTGGATGC---C--GACTGATTCAATGTGTG---TATTACCATTTACAGCACATTCCAGACgtcatgtgagcagagc
gi|9 : AAGATGCATACA--CATGCCTGA---AC--ACAAC--CA--CTGTAAGTAATAT-AAGTATA-AA--AAT--AAGGACACAAGA--CCTCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAACAA----ACTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC
Alignments
lowQualScore : 11 1 4444 222222222222 11111111 333333333333333333333333 11111 11111 111111 1111111 11111 44444444444444444 1111 11111 444444444 1111111 222222 1 333 11 111111 1 1 11 33333333333 1111 1 22
lowQualScore : 1 11 55 3 0 9999 3 666 3 0 55 3 7777 55 1 666666666666 66 66666666 4 777 4 4 666666666666666666666666 99 6 5 1 44444 22222 5 5 3 444444 888 2 1 5 1 8888888 33333 1 1 88888888888888888 6 4444 3 44444 1 444444444 999 8 3 1 1 1 2 6 6 9999999 4 3 888 333333 1 0 111 11 99 4 5 66 444444 1 2 9 0 33 6 33 00000000000 0 7 4444 3 00
lowQualScore : . .. .. . . .... . ... . . .. . .... .. . ............ .. ........ . ... . . ........................ .. . . . ..... ..... . . . ...... ... . . . . ....... ..... . . ................. . .... . ..... . ......... ... . . . . . . . . ....... . . ... ...... . . ... .. .. . . .. ...... . . . . .. . .. ........... . . .... . ..
lowQualScore : 0 55 55 1 0 4444 4 444 6 5 00 6 8888 55 4 444444444444 11 11111111 4 888 4 4 666666666666666666666666 88 9 0 0 33333 55555 0 0 4 555555 888 9 0 7 0 6666666 66666 0 0 22222222222222222 7 2222 5 33333 0 555555555 999 7 2 5 0 0 5 7 7 8888888 6 8 888 000000 4 0 444 00 22 6 6 22 666666 2 8 8 0 88 5 55 77777777777 7 3 7777 3 00
consensus : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--TTTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----AA-----AT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT----C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCAACACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
Reference ( family-2164 ) : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--CTTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGTAGACCAAA-TNAC-----AA-----AT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNANTGAAA-GNCGNCCC----C--CA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCAACACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCCGAGTTACTAAGAAC--CA--CTGTAAGTAATAGCAATAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
gi|1 : GAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG----TTTGAG--GTTAAGGACCATATT-GCATGCTTCTCACAAATGGCTT----------CACAACTGCACTTTTTTTTCAAAAATAAGT---AA-C-T--------------------AA--ATCTGAAGACCAAA-TTAC-----AA-----AT-TAAATA-TTTGGATGC---TCAGACTGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNN----N--NNNTGCTTATA----TTATATA--AGAACTGGCTTACA-CA-----ATTTCCAACACAT---TT---C----CACCTAGTTTCATTGG-CAAGGCAA-GATCC----TGCATTCTTGCATATAT------TACATTCAGTT-TTATTGAC---AA--ACGATCTAAGAGTTATACAGTCATG--TGAGC-----AGAGC--CA--CTGTTAGCAATAG--ATATTAGAT--A-TTAAAG---ATGAGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAAC-AACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACC
gi|10 : AAAAAGAGATAAATATTTT-GCATATTTTT-GTGTGTCGTTTA----TATGAGTTA---A-------CAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG----TTTGAG--GTGAAGGGTCATTTTTACATGCTTCATATGTATGGTG-----------AATAAAGGAACATTTT--------ATG-GA---AA-T-T--------------------ataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|11 : ----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGATTGCTTAAG--GTGAAGGATCATATCTACATGTTTCATACATATGGCA-----------AATAATGGCATACTTT--------ATG-GA---AATT-T--------------------AT--AT-AGTAGACCAAA-ccataacttaaatataaaaatgctaaat
gi|12 : ttAATATAGGTAAATGTTTT-CCAT-TTTTG-GTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTG--TTTCCCATCATA--GG-TAGCAG----TTTGCACTGTGAGGGACCATGTTTGCATACTTCATATATc
gi|14 : AATATAGATAAATGTTTT-CCTA-TTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTT
gi|16 : AGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGG
gi|2 : AAACACAGGTAAATATTTT-ACAA-TGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGATAACTTAAA--GTGAAGAACACTATTTGCATGTTTCGTACACATGCCG-----------AATAATGGCGCTTTTT--------ATG-GA---AA-T-T--------------------AT--ATCAG-AGACCAAA-TCAC-----TA-----AT-CAAACA-TTTGGAT-C---T--GGCTGTTTCAATGTGTC---TATTATCATTTTCATCACAATCTGGGCTA-TAAA-------TGA-ATTACAGTTTTATAACTGAAG-G---------------A-TGAA---------TATATA--A--ACTTGCTTACA-CC-----ATCTCCAACACATAGGTTTTACATGAAACCAAGTTTCATTAGACAAGG-AA-GACCTTATGTGCATATTTGTGTATAT------TACATAAAATTGTTACTGACAGAAA--AAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACC--CA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAG-TCTGAA----CTCAATAGAACAATTATA-TCTACCATGAGGCCCTCAGATAACAAA-CAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACAT-T------------GTTCA-------GAGATA---AT-GCAAACGGT-------------CTTTCCAATCACACAGG-TAGCAGATTGCTTCAG--ATGAAGGACCATATTTACATGTTTCATACACATGGCA-----------AATAATGGCACCTTTT--------GTG-GA---AA-TAT--------------------AT--AT-AGAAGACCAAA-TCAC-----AA-----AT-CAAACA-TTTGGATACCCTT--GACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNTC--CA-TACATGTA----TATTATA--G--ACTGGCTTACA--A-------TTACACCAC-------ATACATGACACCAAGTTATATTGGCCAAGG-AA-GACCT----TATGTACTTGTCAATATTACATGTACATCCAGTTGTTATTGAC--AAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAAC--TACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|4 : taCTTGCTAATCACA--GGGTAGCAGATTGCCTGAG--GTGAAGGAC-------------------CATAT--------------------TTACAGTTGTC--------ATG-GA---AA-T-T--------------------AT--AT-GGTAGACCAAAATCAC-----AACACAAAT-CAAACA-TTTGGATAC---T--GACTGATTCATTGTACT---TATTACCAATTTCAACACATTCCAGGCTA-TGAT-------TGA--------------TACTGATG-GATGACCTG---A--GA-TGTATATA----T--TATA--G--ACTGGTTTACA--A-------TTACACCACATAGGTTATATATGACACCAAGTTTCATTGGCCAAGG-AATGA--------------------ATAT------TACATCAAGTTGTTATTAAC---AA--AAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAGTACTTTT--CTGTAA
gi|5 : cAAATGAAGGTAAATGTTTT------------GTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG----TTTGAG--GCAAAGGACCATGTTTACATGCCTCATACCTATGGTG-----------AATAATGGCATA-TTT--------AGA-GA---AA-T-TTTGTAACTTAAACAGTACAAATAAATCTGAAGACCAAA-TGACATTTTAA-----AT-TAAACA-TTTGGAAGC---T--CACTGATTTAATGTGTTCAGTATTACCA--TACAGCACATTCTAGACAA-CACA-------TGGTATTCCA
gi|5 : aATATAGGTTATACATGGCAACCAGTTTCATT-GCCAAGA-AA-Gtatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|6 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaacacatggtattccatatactGGTCAATGTTTT-GCAT-TTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG----TTTGAG--GTGAAGGACCATGTTTACATGCTTCAAAAATATGGTG-----------AATAATGGCACATTTT--------AGA-GA---AA-T-T--------------------AA--ATCTGTAGACCACA-TGAC-----AA-----AT-TAAACA-TTTGGATGC---G--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTACACCAGTACA-------TGG-TTTTCAGTTTTATAATTGAAACGCCATCCC----C--CA-TGCATATAATTATTATATA--A-----GA-----A-C-------TTTCCAATGCATAGGTTATA
gi|7 : A-----ATGCAAACAGTTTGG----------GATT-AGTCAATGTGTT---TTTTACTATGTACAGAACATTCTAAA-AA-TATAAAAATAATGA-TATTCAGTTTTATTAGTGAAA-GGTGACCT----CAAGA-TGCATACA----TTAAATAAGA--ACAGGCTTACACCAGGTCCATTTCCAACACAT---TT---CA----ACCTAGTTTCACTGTCCAAGC-AA-GATCC----TGCATTCTTGCATACAT------TACATTCAGTT-TTATTGAC---AA--AAGATCTAAGATGCATACA--
gi|8 : tAATAAAGGTGAATGTTTTTGCAT-TTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG----TTTGAG--GGGAAGGACCATGGTTACATGCGTCATACATATGGCATATTTTAGAGAAATTATGTTAC--TTA--------ACA-GATACAA-T-T--------------------GA--ATCTGTAGACCATA-TGAT-----AA-----AT-TAAACA-TTTGGATGC---C--GACTGATTCAATGTGTG---TATTACCATTTACAGCACATTCCAGACgtcatgtgagcagagc
gi|9 : AAGATGCATACA--CATGCCTGA---AC--ACAAC--CA--CTGTAAGTAATATAAGTA-TA-AA--AAT--AAGGACACAAG--ACCTCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAAC-AA----ACTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC
Alignments
lowQualScore : 11 1 4444444 222222222222 11111111 333333333333333333333333 22222222222 111111 1111 1111111 11111 22222222222222 1111 11111 444444444 111 1111111 222222 1 333 11 11 111111 1 11 33333333333 1111 1 22
lowQualScore : 1 11 55 3 0 9999 3 666 3 0 55 3 0000000 55 1 666666666666 66 66666666 4 777 4 4 666666666666666666666666 99 5 5 1 11111111111 5 5 3 444444 888 0000 2 1 5 1 8888888 33333 1 0 88888888888888 6 4444 3 44444 1 444444444 000 5 999 8 3 1 1 1 2 6 6 9999999 4 3 888 333333 1 0 111 11 88 6 5 66 444444 1 444 9 0 33 6 33 00000000000 0 7 4444 3 00
lowQualScore : . .. .. . . .... . ... . . .. . ....... .. . ............ .. ........ . ... . . ........................ .. . . . ........... . . . ...... ... .... . . . . ....... ..... . . .............. . .... . ..... . ......... ... . ... . . . . . . . . ....... . . ... ...... . . ... .. .. . . .. ...... . ... . . .. . .. ........... . . .... . ..
lowQualScore : 0 55 55 1 0 4444 4 444 6 5 00 6 3333333 55 4 444444444444 11 11111111 4 888 4 4 666666666666666666666666 88 9 0 0 55555555555 0 0 4 555555 888 6666 9 0 7 0 6666666 66666 0 5 33333333333333 7 2222 5 33333 0 555555555 000 7 999 7 2 5 0 0 5 7 7 8888888 6 8 888 000000 4 0 444 00 33 7 6 22 666666 2 555 8 0 88 5 55 77777777777 7 3 7777 3 00
consensus : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT-C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
Reference ( family-2164 ) : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT-C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
gi|1 : GAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG----T--TTGAG--GTTAAGGACCATATT-GCATGCTTCTCACAAATGGCTT----------CACAACTGCACTTTTTTTTCAAAAATAAGT---AA-C-T--------------------AA--ATCTGAAGACCAAA-TTAC-----A-----AAT-TAAATA-TTTGGATGC---TCAGACTGANNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-N--NNNTGCTTATA----TTATATA--AGAACTGGCTTACA-CA-----ATTTCCA---AC-ACAT---TT---C----CACCTAGTTTCATTGG-CAAGGCAA-GATCC----TGCATTCTTGCATATAT------TACATTCAGTT-TTATTGAC---AA--ACGATCTAAGAGTTATACAGTCATG--TGAGC-----AGAGC--CA--CTGTTAGCAATAGA--TATTAGAT--A-TTAAAG---ATGAGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAAC-AACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACC
gi|10 : AAAAAGAGATAAATATTTT-GCATATTTTT-GTGTGTCGTTTA----TATGAGTTA---A-------CAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG----T--TTGAG--GTGAAGGGTCATTTTTACATGCTTCATATGTATGGTG-----------AATAAAGGAACATTTT--------ATG-GA---AA-T-T--------------------ataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|11 : ----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGAT--TGCTTAAG--GTGAAGGATCATATCTACATGTTTCATACATATGGCA-----------AATAATGGCATACTTT--------ATG-GA---AATT-T--------------------AT--AT-AGTAGACCAAA-ccataacttaaatataaaaatgctaaat
gi|12 : ttAATATAGGTAAATGTTTT-CCAT-TTTTG-GTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTGT--TTCCCATCATA--GG-TAGCAG----T--TTGCACTGTGAGGGACCATGTTTGCATACTTCATATATc
gi|14 : AATATAGATAAATGTTTT-CCTA-TTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTT
gi|16 : AGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGG
gi|2 : AAACACAGGTAAATATTTT-ACAA-TGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGATAAC--TTAAA--GTGAAGAACACTATTTGCATGTTTCGTACACATGCCG-----------AATAATGGCGCTTTTT--------ATG-GA---AA-T-T--------------------AT--ATCAG-AGACCAAA-TCAC-----T-----AAT-CAAACA-TTTGGAT-C---T--GGCTGTTTCAATGTGTC---TATT----ATCATTTTCATCACAATCTGGGCTA-TAAA-------TGA-ATTACAGTTTTATAACTGAAG-G------------A-TGAA---------TATATA--A--ACTTGCTTACA-CC-----ATCTCCA---AC-ACATAGGTTTTACATGAAACCAAGTTTCATTAGACAAGG-AA-GACCTTATGTGCATATTTGTGTATAT------TACATAAAATTGTTACTGACAGAAA--AAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACC--CA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAG-TCTGAA----CTCAATAGAACAATTATA-TCTACCATGAGGCCCTCAGATAACAAA-CAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACAT-T------------GTTCA-------GAGATA---AT-GCAAACGGT-------------CTTTCCAATCACACAGG-TAGCAGAT--TGCTTCAG--ATGAAGGACCATATTTACATGTTTCATACACATGGCA-----------AATAATGGCACCTTTT--------GTG-GA---AA-TAT--------------------AT--AT-AGAAGACCAAA-TCAC-----A-----AAT-CAAACA-TTTGGATACCCTT--GACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNT-C--CA-TACATGTA----TATTATA--G--ACTGGCTTACA--A-------TTACA---CC-AC-------ATACATGACACCAAGTTATATTGGCCAAGG-AA-GACCT----TATGTACTTGTCAATATTACATGTACATCCAGTTGTTATTGAC--AAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAAC--TACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|4 : taCTTGCTAATCACA--GGGTAGCAGAT--TGCCTGAG--GTGAAGGAC-------------------CATAT--------------------TTACAGTTGTC--------ATG-GA---AA-T-T--------------------AT--AT-GGTAGACCAAAATCAC-----AACACAAAT-CAAACA-TTTGGATAC---T--GACTGATTCATTGTACT---TATT----ACCAATTTCAACACATTCCAGGCTA-TGAT-------TGA--------------TACTGATG-GATGACCTGA--GA-TGTATATA----T--TATA--G--ACTGGTTTACA--A-------TTACA---CC-ACATAGGTTATATATGACACCAAGTTTCATTGGCCAAGG-AATGA--------------------ATAT------TACATCAAGTTGTTATTAAC---AA--AAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAGTACTTTT--CTGTAA
gi|5 : cAAATGAAGGTAAATGTTTT------------GTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG----T--TTGAG--GCAAAGGACCATGTTTACATGCCTCATACCTATGGTG-----------AATAATGGCATA-TTT--------AGA-GA---AA-T-TTTGTAACTTAAACAGTACAAATAAATCTGAAGACCAAA-TGACATTTTA-----AAT-TAAACA-TTTGGAAGC---T--CACTGATTTAATGTGTTCAGTATT----ACCA--TACAGCACATTCTAGACAA-CACA-------TGGTATTCCA
gi|5 : aTTCCATATACTATATAGGTTATACATGGCAACCAGTTTCATT-GCCAAGA-AA-Gtatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|6 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaacacatggtaGGTCAATGTTTT-GCAT-TTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG----T--TTGAG--GTGAAGGACCATGTTTACATGCTTCAAAAATATGGTG-----------AATAATGGCACATTTT--------AGA-GA---AA-T-T--------------------AA--ATCTGTAGACCACA-TGAC-----A-----AAT-TAAACA-TTTGGATGC---G--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTACACCAGTACA-------TGG-TTTTCAGTTTTATAATTGAAACGCCATCCC-C--CA-TGCATATAATTATTATATA--A-----GA-----A-C-------TTTCCA---AT-GCATAGGTTATA
gi|7 : -----AATGCAAACAGTTTGG----------GATT-AGTCAATGTGTT---TTTT----ACTATGTACAGAACATTCTAAA-AA-TATAAAAATAATGA-TATTCAGTTTTATTAGTGAAA-GGTGACCT-CAAGA-TGCATACA----TTAAATAAGA--ACAGGCTTACACCAGGTCCATTTCCA---AC-ACAT---TT---CA----ACCTAGTTTCACTGTCCAAGC-AA-GATCC----TGCATTCTTGCATACAT------TACATTCAGTT-TTATTGAC---AA--AAGATCTAAGATGCATACAGTCATG--TGAG
gi|8 : tAATAAAGGTGAATGTTTTTGCAT-TTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG----T--TTGAG--GGGAAGGACCATGGTTACATGCGTCATACATATGGCATATTTTAGAGAAATTATGTTAC--TTA--------ACA-GATACAA-T-T--------------------GA--ATCTGTAGACCATA-TGAT-----A-----AAT-TAAACA-TTTGGATGC---C--GACTGATTCAATGTGTG---TATT----ACCATTTACAGCACATTCCAGACcagagc
gi|9 : AAGATGCATACA--CATGCCTGA---AC--ACAAC--CA--CTGTAAGTAATATAAGTA-TA-AA--AAT--AAGGACACAAG--ACCTCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAAC-AA----ACTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC
Alignments
lowQualScore : 11 1 4444444 222222222222 11111111 333333333333333333333333 22222222222 111111 1111 1111111 11111 22222222222222 1111 11111 444444444 111 1111111 222222 1 333 11 11 111111 1 11 33333333333 1111 1 22
lowQualScore : 1 11 55 3 0 9999 3 666 3 0 55 3 0000000 55 1 666666666666 66 66666666 4 777 4 4 666666666666666666666666 99 5 5 1 11111111111 5 5 3 444444 888 0000 2 1 5 1 8888888 33333 1 0 88888888888888 6 4444 3 44444 1 444444444 000 5 999 8 3 1 1 1 2 6 6 9999999 4 3 888 333333 1 0 111 11 88 6 5 66 444444 1 444 9 0 33 6 33 00000000000 0 7 4444 3 00
lowQualScore : . .. .. . . .... . ... . . .. . ....... .. . ............ .. ........ . ... . . ........................ .. . . . ........... . . . ...... ... .... . . . . ....... ..... . . .............. . .... . ..... . ......... ... . ... . . . . . . . . ....... . . ... ...... . . ... .. .. . . .. ...... . ... . . .. . .. ........... . . .... . ..
lowQualScore : 0 55 55 1 0 4444 4 444 6 5 00 6 3333333 55 4 444444444444 11 11111111 4 888 4 4 666666666666666666666666 88 9 0 0 55555555555 0 0 4 555555 888 6666 9 0 7 0 6666666 66666 0 5 33333333333333 7 2222 5 33333 0 555555555 000 7 999 7 2 5 0 0 5 7 7 8888888 6 8 888 000000 4 0 444 00 33 7 6 22 666666 2 555 8 0 88 5 55 77777777777 7 3 7777 3 00
consensus : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT-C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
Reference ( family-2164 ) : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT-C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
gi|1 : GAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG----T--TTGAG--GTTAAGGACCATATT-GCATGCTTCTCACAAATGGCTT----------CACAACTGCACTTTTTTTTCAAAAATAAGT---AA-C-T--------------------AA--ATCTGAAGACCAAA-TTAC-----A-----AAT-TAAATA-TTTGGATGC---TCAGACTGANNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-N--NNNTGCTTATA----TTATATA--AGAACTGGCTTACA-CA-----ATTTCCA---AC-ACAT---TT---C----CACCTAGTTTCATTGG-CAAGGCAA-GATCC----TGCATTCTTGCATATAT------TACATTCAGTT-TTATTGAC---AA--ACGATCTAAGAGTTATACAGTCATG--TGAGC-----AGAGC--CA--CTGTTAGCAATAGA--TATTAGAT--A-TTAAAG---ATGAGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAAC-AACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACC
gi|10 : AAAAAGAGATAAATATTTT-GCATATTTTT-GTGTGTCGTTTA----TATGAGTTA---A-------CAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG----T--TTGAG--GTGAAGGGTCATTTTTACATGCTTCATATGTATGGTG-----------AATAAAGGAACATTTT--------ATG-GA---AA-T-T--------------------ataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|11 : ----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGAT--TGCTTAAG--GTGAAGGATCATATCTACATGTTTCATACATATGGCA-----------AATAATGGCATACTTT--------ATG-GA---AATT-T--------------------AT--AT-AGTAGACCAAA-ccataacttaaatataaaaatgctaaat
gi|12 : ttAATATAGGTAAATGTTTT-CCAT-TTTTG-GTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTGT--TTCCCATCATA--GG-TAGCAG----T--TTGCACTGTGAGGGACCATGTTTGCATACTTCATATATc
gi|14 : AATATAGATAAATGTTTT-CCTA-TTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTT
gi|16 : AGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGG
gi|2 : AAACACAGGTAAATATTTT-ACAA-TGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGATAAC--TTAAA--GTGAAGAACACTATTTGCATGTTTCGTACACATGCCG-----------AATAATGGCGCTTTTT--------ATG-GA---AA-T-T--------------------AT--ATCAG-AGACCAAA-TCAC-----T-----AAT-CAAACA-TTTGGAT-C---T--GGCTGTTTCAATGTGTC---TATT----ATCATTTTCATCACAATCTGGGCTA-TAAA-------TGA-ATTACAGTTTTATAACTGAAG-G------------A-TGAA---------TATATA--A--ACTTGCTTACA-CC-----ATCTCCA---AC-ACATAGGTTTTACATGAAACCAAGTTTCATTAGACAAGG-AA-GACCTTATGTGCATATTTGTGTATAT------TACATAAAATTGTTACTGACAGAAA--AAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACC--CA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAG-TCTGAA----CTCAATAGAACAATTATA-TCTACCATGAGGCCCTCAGATAACAAA-CAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACAT-T------------GTTCA-------GAGATA---AT-GCAAACGGT-------------CTTTCCAATCACACAGG-TAGCAGAT--TGCTTCAG--ATGAAGGACCATATTTACATGTTTCATACACATGGCA-----------AATAATGGCACCTTTT--------GTG-GA---AA-TAT--------------------AT--AT-AGAAGACCAAA-TCAC-----A-----AAT-CAAACA-TTTGGATACCCTT--GACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNN-NNNNNNNT-C--CA-TACATGTA----TATTATA--G--ACTGGCTTACA--A-------TTACA---CC-AC-------ATACATGACACCAAGTTATATTGGCCAAGG-AA-GACCT----TATGTACTTGTCAATATTACATGTACATCCAGTTGTTATTGAC--AAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAAC--TACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|4 : taCTTGCTAATCACA--GGGTAGCAGAT--TGCCTGAG--GTGAAGGAC-------------------CATAT--------------------TTACAGTTGTC--------ATG-GA---AA-T-T--------------------AT--AT-GGTAGACCAAAATCAC-----AACACAAAT-CAAACA-TTTGGATAC---T--GACTGATTCATTGTACT---TATT----ACCAATTTCAACACATTCCAGGCTA-TGAT-------TGA--------------TACTGATG-GATGACCTGA--GA-TGTATATA----T--TATA--G--ACTGGTTTACA--A-------TTACA---CC-ACATAGGTTATATATGACACCAAGTTTCATTGGCCAAGG-AATGA--------------------ATAT------TACATCAAGTTGTTATTAAC---AA--AAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAGTACTTTT--CTGTAA
gi|5 : cAAATGAAGGTAAATGTTTT------------GTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG----T--TTGAG--GCAAAGGACCATGTTTACATGCCTCATACCTATGGTG-----------AATAATGGCATA-TTT--------AGA-GA---AA-T-TTTGTAACTTAAACAGTACAAATAAATCTGAAGACCAAA-TGACATTTTA-----AAT-TAAACA-TTTGGAAGC---T--CACTGATTTAATGTGTTCAGTATT----ACCA--TACAGCACATTCTAGACAA-CACA-------TGGTATTCCA
gi|5 : aTTCCATATACTATATAGGTTATACATGGCAACCAGTTTCATT-GCCAAGA-AA-Gtatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|6 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaacacatggtaGGTCAATGTTTT-GCAT-TTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG----T--TTGAG--GTGAAGGACCATGTTTACATGCTTCAAAAATATGGTG-----------AATAATGGCACATTTT--------AGA-GA---AA-T-T--------------------AA--ATCTGTAGACCACA-TGAC-----A-----AAT-TAAACA-TTTGGATGC---G--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTACACCAGTACA-------TGG-TTTTCAGTTTTATAATTGAAACGCCATCCC-C--CA-TGCATATAATTATTATATA--A-----GA-----A-C-------TTTCCA---AT-GCATAGGTTATA
gi|7 : -----AATGCAAACAGTTTGG----------GATT-AGTCAATGTGTT---TTTT----ACTATGTACAGAACATTCTAAA-AA-TATAAAAATAATGA-TATTCAGTTTTATTAGTGAAA-GGTGACCT-CAAGA-TGCATACA----TTAAATAAGA--ACAGGCTTACACCAGGTCCATTTCCA---AC-ACAT---TT---CA----ACCTAGTTTCACTGTCCAAGC-AA-GATCC----TGCATTCTTGCATACAT------TACATTCAGTT-TTATTGAC---AA--AAGATCTAAGATGCATACAGTCATG--TGAG
gi|8 : tAATAAAGGTGAATGTTTTTGCAT-TTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG----T--TTGAG--GGGAAGGACCATGGTTACATGCGTCATACATATGGCATATTTTAGAGAAATTATGTTAC--TTA--------ACA-GATACAA-T-T--------------------GA--ATCTGTAGACCATA-TGAT-----A-----AAT-TAAACA-TTTGGATGC---C--GACTGATTCAATGTGTG---TATT----ACCATTTACAGCACATTCCAGACcagagc
gi|9 : AAGATGCATACA--CATGCCTGA---AC--ACAAC--CA--CTGTAAGTAATATAAGTA-TA-AA--AAT--AAGGACACAAG--ACCTCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAAC-AA----ACTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
blockSeqs : T TG T T T ACTG C TTT T CA G ATTGC CT T ATATTTTAGAGA AT . . TAC T A TTGTAACTTAAACAGTACAAATAA CA T A C AACACA G G A CCTT CAG NNNN T T G A AAAATAA TATTC A GGTGACCTCAAG . ATTA T AGA C CCAGGTCCA TAT T AGG T T A A A A . T CCTTATG A A TGT TACATG A G AGA AG GT C T TA TACT C CAG A . AA G TG GACACAAGA A TCT A C
blockSeqs : T C A T T . T . . . . ATAAC . A G AC . . . . . AT CT A . C ATTTTA . . A T . . N N . N . ATTA N GATGACCTGAG . . A A C CCA . . AGG A T A A G C . . CCT G A TCA . C G A . . C T TA TTTT A TAA A . . G TG GTCTGAA A TCT . .
blockSeqs : C C A G . . T . . . . ATTGC . G A TT . . . . . AT CT T . C T . . G T . . A T . A . NNNN T CGCCATCCCCC . . T G T A . . AGG A T A A G C . . TCC A T CAT . C G . . . C T TA CA T AAG . . . A .
blockSeqs : C A T T . . C . . . . ATTGC . A G CT . . . . . AT CT A . G A . . G T . . T A . C . TTTT A NNNNNNNTCC . . T G C A . . AGG A T G C G C . . . . . . . T . . . . C . . CA
blockSeqs : A A T T . . T . . . . T . A A TT . . . . . AT A T . G A . . G G . . T C . C . TATT T G . . . A . C . . . A . . T . C . . . .
blockSeqs : A G T . . . T . . . . T . G G AT . . . . . AA A T . G A . . . C . . T A . T . . . . . .
blockSeqs : . . . . . T . . . . T . G G A . . . . . GA G . . . . . . . . .
blockSeqs : . . . . . . T . G . . . . . . .
blockSeqs : . . . . T . .
blockSeqs : . . . .
blockSeqCons : T* G*********** ******** T***** CGCGACCTCG**** G**** A******** AGG ** TA
originalCons : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAG-GNCGACCT-C--NA-TGCATATA----TTATATA--A--ACTGGCTTACA-CA-----ATTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
finalCons : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----A-----AAT-CAAACA-TTTGGATGCT-----GACTGATTCAATGTGTT---TATT----ACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAGCGCGACCTCG----A-TGCATATA----TTATATAG----ACTGGCTTACAA--------TTTCCA---AC-ACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC
Alignments
lowQualScore : 11 1 4444444 222222222222 11111111 333333333333333333333333 11111 11111 111111 1111111 11111 333333333333 1111 111 1111111 44444444 1111111 222222 1 333 11 11 111111 1 11 33333333333 1111 1 22
lowQualScore : 1 11 55 3 0 9999 3 666 3 0 55 3 0000000 55 1 666666666666 66 66666666 4 777 4 4 666666666666666666666666 99 5 5 1 44444 22222 5 5 3 444444 888 2 1 5 1 8888888 11111 3 0 555555555555 6 4444 6 111 8888888 22222222 999 8 3 1 1 1 2 6 6 9999999 4 3 888 333333 1 0 111 11 88 6 5 66 444444 1 444 9 0 33 6 33 00000000000 0 7 4444 3 00
lowQualScore : . .. .. . . .... . ... . . .. . ....... .. . ............ .. ........ . ... . . ........................ .. . . . ..... ..... . . . ...... ... . . . . ....... ..... . . ............ . .... . ... ....... ........ ... . . . . . . . . ....... . . ... ...... . . ... .. .. . . .. ...... . ... . . .. . .. ........... . . .... . ..
lowQualScore : 0 55 55 1 0 4444 4 444 6 5 00 6 3333333 55 4 444444444444 11 11111111 4 888 4 4 666666666666666666666666 88 9 0 0 33333 55555 0 0 4 555555 888 9 0 7 0 6666666 66666 3 5 333333333333 7 2222 7 777 0000000 55555555 999 7 2 5 0 0 5 7 7 8888888 6 8 888 000000 4 0 444 00 33 7 6 22 666666 2 555 8 0 88 5 55 77777777777 7 3 7777 3 00
consensus : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----AA-----AT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-TTTNCAGTTTTATAACTGAAGGGCGA-CCTC--GA-TGCATA----TAT-TA---TAT-A--G--ACTGGCTTACAC-------ATTTCCAACACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
Reference ( family-2164 ) : AAATANAGGTAAATGTTTT-GCAT-TTTTT-GTGTTTTGTTTA----TCCGAGATA---AT-GCAAACAGTTTTTAATTGGTATCTTTCCCATCACA--GG-TAGCAGAT--T--TTGAG--GTGAAGGACCATGTTTACATGCTTCATACATATGGCG-----------AATAATGGCACNTTTT--------ATG-GA---AA-T-T--------------------AT--ATCNGNAGACCAAA-TNAC-----AA-----AT-CAAACA-TTTGGATGC---T--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTAGACNA-TANA-------TGA-NTTNCAGTTTTATNACTGAAGCGCGA-CCTC--GA-TGCATA----TAT-TA---TAT-A--G--ACTGGCTTACA--------ATTTCCAACACATAGGTTATACATGACACCNAGTTTCATTGGCCAAGG-AA-GACCC----TGCGTNCTTGCGTATAT------TACATCCAGTTGTTATTGAC--AAA--AAGATCTAAGATGCATACA--CGTGCCTGAGTTACTAAGAAC--CA--CTGTAAGTAATAGNAGTAATA-AT--AGTTGAAGG-CACGAG--ACCTCATTGGAACGATTATACCCCACCATGAGGCCCTCAAATAAC-AA-CAAACTTGCTTAGTGAAAATCTTTGATCCAAACTGGATCTGAACC
gi|1 : GAGATA---AT-GCAAACAGTTTTGGATTGGTATCTTTCCCATCACA--GG-TAGCAG----T--TTGAG--GTTAAGGACCATATT-GCATGCTTCTCACAAATGGCTT----------CACAACTGCACTTTTTTTTCAAAAATAAGT---AA-C-T--------------------AA--ATCTGAAGACCAAA-TTAC-----AA-----AT-TAAATA-TTTGGATGC---TCAGACTGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN--NNNTGCTTA----TAT-TA---TAT-A--AGAACTGGCTTACACA------ATTTCCAACACAT---TT---C----CACCTAGTTTCATTGG-CAAGGCAA-GATCC----TGCATTCTTGCATATAT------TACATTCAGTT-TTATTGAC---AA--ACGATCTAAGAGTTATACAGTCATG--TGAGC-----AGAGC--CA--CTGTTAGCAATAGA--TATTAGAT--A-TTAAAG---ATGAGATACCTCATTGGAATGATT-TACCCCACCATGAGGCCTTCAAATAAC-AACCAAACTTGCTTTGTGAAAATATTTTATCCAAACTGGATCTGAACC
gi|10 : AAAAAGAGATAAATATTTT-GCATATTTTT-GTGTGTCGTTTA----TATGAGTTA---A-------CAGTTTTTAGATGGTATCTTTCCTGTCGCA--GG-TAGCAG----T--TTGAG--GTGAAGGGTCATTTTTACATGCTTCATATGTATGGTG-----------AATAAAGGAACATTTT--------ATG-GA---AA-T-T--------------------ataatttaaatagtgagatgcatgtgatcctgaggcagtgatgtagagtgctgtcagccaggtgtaccaag
gi|11 : ----TCCAAGATA---AT-GCAAACATTTTTTAATTGGCATCTTCCCAATGACA--GG-TAGCAGAT--TGCTTAAG--GTGAAGGATCATATCTACATGTTTCATACATATGGCA-----------AATAATGGCATACTTT--------ATG-GA---AATT-T--------------------AT--AT-AGTAGACCAAA-ccataacttaaatataaaaatgctaaat
gi|12 : ttAATATAGGTAAATGTTTT-CCAT-TTTTG-GTGTTTTGTTTA----TCTGAGATGTTTAT-GCAAACAGTTTTGAATTGGTG--TTTCCCATCATA--GG-TAGCAG----T--TTGCACTGTGAGGGACCATGTTTGCATACTTCATATATc
gi|14 : AATATAGATAAATGTTTT-CCTA-TTTTT-GTTTTTTGTTTA----TCTGAGATA---AT-GCAAACAGTT
gi|16 : AGATA---AT-GCAGTCAGTTTTTAATTGGTATCTTTCCAATCACA--GA-TGG
gi|2 : AAACACAGGTAAATATTTT-ACAA-TGTTT-GTGTTTTGTTTA----TCCAAGATA---AT-GCAAACAGATTTTAACTGGCATTTTCCCCATCACA--GG-TAGCAGATAAC--TTAAA--GTGAAGAACACTATTTGCATGTTTCGTACACATGCCG-----------AATAATGGCGCTTTTT--------ATG-GA---AA-T-T--------------------AT--ATCAG-AGACCAAA-TCAC-----TA-----AT-CAAACA-TTTGGAT-C---T--GGCTGTTTCAATGTGTC---TATTATCATTTTCATCACAATCTGGGCTA-TAAA-------TGA-ATTACAGTTTTATAACTGAAG------------GA-TGAA----------TA---TAT-A--A--ACTTGCTTACACC------ATCTCCAACACATAGGTTTTACATGAAACCAAGTTTCATTAGACAAGG-AA-GACCTTATGTGCATATTTGTGTATAT------TACATAAAATTGTTACTGACAGAAA--AAAATCTAAGATGCATACA--TGTGCCTGAGTTACTAAGACC--CA--CTGTAAGTAACAGCAGTAATA-AT--AGTTGAAAG-TCTGAA----CTCAATAGAACAATTATA-TCTACCATGAGGCCCTCAGATAACAAA-CAATCTTGCTTAGTGAAAATCTTTGATCCAAACTAGATTTGAACC
gi|3 : AAATACTGGTAAG-GTTTT-ACAT-T------------GTTCA-------GAGATA---AT-GCAAACGGT-------------CTTTCCAATCACACAGG-TAGCAGAT--TGCTTCAG--ATGAAGGACCATATTTACATGTTTCATACACATGGCA-----------AATAATGGCACCTTTT--------GTG-GA---AA-TAT--------------------AT--AT-AGAAGACCAAA-TCAC-----AA-----AT-CAAACA-TTTGGATACCCTT--GACTGATTCAATATGTT---CATTNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-------NNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN--NN-TCCATA----CATGTATATTAT-A--G--ACTGGCTTACA--------A-TTACACCAC-------ATACATGACACCAAGTTATATTGGCCAAGG-AA-GACCT----TATGTACTTGTCAATATTACATGTACATCCAGTTGTTATTGAC--AAAAGAAGAGTAAAGGTGCATACA--TGTACCCGAGTTACTAAGAAC--TACTCTATAAATAAAAGTAATAATA-ATAAAGTTGGA
gi|4 : taCTTGCTAATCACA--GGGTAGCAGAT--TGCCTGAG--GTGAAGGAC-------------------CATAT--------------------TTACAGTTGTC--------ATG-GA---AA-T-T--------------------AT--AT-GGTAGACCAAAATCAC-----AACACAAAT-CAAACA-TTTGGATAC---T--GACTGATTCATTGTACT---TATTACCAATTTCAACACATTCCAGGCTA-TGAT-------TGA-T-------------ACTGATGGATGA-CCTGA-GA-TGTATA----TAT-TA---TA-----G--ACTGGTTTACA--------ATT-ACACCACATAGGTTATATATGACACCAAGTTTCATTGGCCAAGG-AATGA--------------------ATAT------TACATCAAGTTGTTATTAAC---AA--AAGATCTAAGGTGCATACA--TGTGCCAGAGTTACTAAGTACTTTT--CTGTAA
gi|5 : cAAATGAAGGTAAATGTTTT------------GTGTTTTGCTCA----TCTGAGACC---AT-GCAAACTGTTTTTAATTATTATCTTGCCCATCACA--AG-TGGCAG----T--TTGAG--GCAAAGGACCATGTTTACATGCCTCATACCTATGGTG-----------AATAATGGCATA-TTT--------AGA-GA---AA-T-TTTGTAACTTAAACAGTACAAATAAATCTGAAGACCAAA-TGACATTTTAA-----AT-TAAACA-TTTGGAAGC---T--CACTGATTTAATGTGTTCAGTATTACCA--TACAGCACATTCTAGACAA-CACA-------TGGTATTCCA
gi|5 : aATATAGGTTATACATGGCAACCAGTTTCATT-GCCAAGA-AA-Gtatactatataggttatacatggcaaccagtttcattgccaagaaag
gi|6 : aaaatgaaggtaaatgttttgtgttttgctcatctgagaccatgcaaactgtttttaattattatcttgcccatcacaagtggcagtttgaggcaaaggaccatgtttacatgcctcatacctatggtgaataatggcatatttagagaaattttgtaacttaaacagtacaaataaatctgaagaccaaatgacattttaaattaaacatttggaagctcactgatttaatgtgttcagtattaccatacagcacattctagacaacacatggtattccatatactGGTCAATGTTTT-GCAT-TTTTTTGTGGTTTGTTTA----TCTCAGATA---AT-G---ATAGTTTTTAATTGGTATCTGTCCCATCACA--GG-AAGCAG----T--TTGAG--GTGAAGGACCATGTTTACATGCTTCAAAAATATGGTG-----------AATAATGGCACATTTT--------AGA-GA---AA-T-T--------------------AA--ATCTGTAGACCACA-TGAC-----AA-----AT-TAAACA-TTTGGATGC---G--GACTGATTCAATGTGTT---TATTACCATTTACAGCACATTCTACACCAGTACA-------TGG-TTTTCAGTTTTATAATTGAAACGCCATCCCC--CA-TGCATATAATTAT-TA---TATAA--G--A-------AC----------TTTCCAATGCATAGGTTATA
gi|7 : A-----ATGCAAACAGTTTGG----------GATT-AGTCAATGTGTT---TTTTACTATGTACAGAACATTCTAAA-AA-TATAAAAATAATGA-TATTCAGTTTTATTAGTGAAAGGTGA-CCTCAAGA-TGCATA----CAT-TA---AAT-AAGA--ACAGGCTTACACCAGGTCCATTTCCAACACAT---TT---CA----ACCTAGTTTCACTGTCCAAGC-AA-GATCC----TGCATTCTTGCATACAT------TACATTCAGTT-TTATTGAC---AA--AAGATCTAAGATGCATACAGTCATG--TGAG
gi|8 : tAATAAAGGTGAATGTTTTTGCAT-TTTTTTGTGTTTTGTTTAACTGTATGAGACA---ATTGCAAACATTTTTTA-TTGGTATCTGTCCCATCACA--GG-TAGCAG----T--TTGAG--GGGAAGGACCATGGTTACATGCGTCATACATATGGCATATTTTAGAGAAATTATGTTAC--TTA--------ACA-GATACAA-T-T--------------------GA--ATCTGTAGACCATA-TGAT-----AA-----AT-TAAACA-TTTGGATGC---C--GACTGATTCAATGTGTG---TATTACCATTTACAGCACATTCCAGACcagagc
gi|9 : AAGATGCATACA--CATGCCTGA---AC--ACAAC--CA--CTGTAAGTAATATAAGTA-TA-AA--AAT--AAGGACACAAG--ACCTCATTGGAACAACAATATCT-ACCATGAGGCCCTCAAATAAC-AA----ACTGGCTTAGGGAAAATCTTTGATCCAAACTGGATCTGAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AACCAAAGACCTCAATAGTGAAGTGCATGTGATCCAAAGACAGTGCTGTTGAGCAGCCAATCAGATGTATC
Unaligned ( gi|15 ): AATAGTGAGGTGCATATGACAGTGCTGTAGAGCAGCCAGTCAGGTTTATCAAAC