lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11 333 1 333 1 4444444 11111 111 1 1111 11111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 5 22 888 5 555 3 1 8888888 8 4 22 2 2 00000 666 55 1 5555 5 444 5555 4 4 77777777 3 5 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : . .. ... . ... . . ....... . . .. . . ..... ... .. . .... . ... .... . . ........ . . . ...............................................................................................
lowQualScore : 0 00 000 0 000 0 5 5555555 9 6 44 4 4 44444 111 99 3 3333 1 444 1111 0 0 66666666 1 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
consensus : NNNNNNNNNNTGCCAATTGTATAACAATTCAGCTTGTNACNTANTAGT-CATACTGAGGGCTTAGTGCAAAACTAGTC-T-A-A----CTCAATAT--AGACTAAGAAGGTAGATAG----ACTAG---TTTTGCG-CTNAG-CC-CT----C---AATATA-T-TCTTGCAA-AGGA-A----GCA-GT--CG-TATAAACAGTGAA---CACTCTTTGTNTANGACTCAGTNCATAGCGTTATCCGTGTTTTTGTTT---TTATAGT
Reference ( gi|1 ) : ATTTTAATCATGCAAATCATATGTGAATTAAG---GTAACTTACTGGTTCATACTGAGGACTTAGTGCAAAACTAGTC-T-A-A----TTCAATAT--TGACTAAGAAGGTAGAGAG----ATTAG---TTTTGCG-ATTAG-CC-CT----C---AATACA-T-TCTTGCAA-AGGA-A----GCA-GT--TG-TATAAATATTGAATGTCA-TC-TTGTTTAAAACTT-GTTTACAG---TATTT-TGTTTTC-TTTATATTATAGT
gi|6 : TGCCAATTGTATAACAATTCAGCTTGTCACCTAC------ATGTCGGGGACTAAGTGCAAAACTAGTC-T-ATA----CACCATTT--TGTCTA------TAGTGAGTTAAACTAA---TATTGCA-TTTAG-CC-CT----C---TATGTAGT-TC--ACAA-GAAA-A----GCATGC--TGATACAAATAATGAAT
gi|10 : ---GTAACATAATAGT-AATATTAAAG-CTTAACGCAAAACTAGTC-T-A-A----CTCAATAT--CAACTAAGAAG--AAAG-------TTAGGCTTTTTGCGCATCAATCT-CT----C---AGCATG-T-T
gi|4 : TTTATA-TGAGGGCTTAGTGCAAAACTAAGC-T-A-A----CTCGGTGT--AGACAAAGAAGGAAGATAA----ACTAG---TGTTG
gi|8 : acttctttgtttttaactccattaataattccacttgttttgaaaatgtatgtgcaaaatatCATGCTGAG---CTAGTGCAAAACTAGT--T-A-A----TTCAATAT--AGGCTAAAATGGCAGATGG----TCTAG---TATTGTG-CCAGG-CC-CT----A---AATtcatggtataacaatatactgcaggtatg
gi|6 : tttgttgatttgatagtacagacatcaagtgaaCATA--GAGGGCTAAATGCAATATTAGTT-T-A-A----CTCACTAT--AGAC-AAAATGGTGTATAG----ACTAG---TTTTGCA-CTTAG-TC-CC----C---GACA
gi|7 : tgccaattgtataacaattcagcttgtcacctacaTACCGAGGGCTTGGTGCAAAATCAAAT-T-A-AAATACTCAGTAT--AGATTAAGAAGGTGGATAG----ACAAA---TTCTGCG-CCAAG-CC-CT----CAGTAATATA-T-TCtagttcacaagaaaagcatgctgatacaaataatgaat
gi|7 : aatgtggtgtgaaaaacacagtgTACTGAGGGCTTGGCGCAGAATTTGTC-T-A-acccaaaatgag
gi|12 : aatgtggtgtgaaaaacacagtgtaccgagggcttggtgcaaaatcaaattaaaatactcagtatagattaagaaggtggaTAAGAACTTGGTGTAAAACTGGTT-T-A-A----TTCAATAT--AGAAACAGAATGAAGATAG----ACTAA---TTTTGCatatattcacccaaaatgag
gi|2 : attgtttgatacccaaaatattgttGAAAGCTTAGTGCAAAACTAGTT-T-T-A----CTCAATAT--AGAGTAAGAAGGTAGATAT----ATCAG---TATTGTG-CTGAG-CA-CTCGAAC---AGTATA-C-TC-----A-AGGATAAAATGCA-GTAGTG-TATA------GAA---CACTCTTTGTATATGACTCAGTATATAGCGTTATTTGTGTTTTTGTTT---TTATAGTcc
gi|11 : cGAGCACTTGGTGCATAACTAGTC-T-A-A----ATAAA------GACTAAGTAGGTAGATAG----ACAAG---TTTTGCA-GTAAG-CCTCT----G---ATTTCA-TATCTTGC
gi|5 : ttcAGGGCTTGGTACAAAACTAGTT-T-A-A----GTCAATAT--ATACTAGGAACTTAGATAG----ATTAG---TTTTGCG-CTGAA-TC-------T---AAGACA-T-AC-TGTAATAG--------GCA--T--CG-TATAAACAGTG--------TC-TTATC--GGACTT-ATTCA-AGT--TATCC-TGTTTTccacaaat
gi|3 : ttaaaaataaAGGACTTGGTGTAAAACCATTG-T-A-A----CTTAATATAGTGA--AAGAAGGCAGATAG----ACTAG---TTCTGC--ACTA---C-TT----C---CATAAA-T-T-TTACAtgttttttaat
gi|15 : aagatcaacacttttttattttaatcattttcaattaatatttgacatttcttgaacaattgtgtgatatttgacttttcaCTAAATGCCAAACTATTC-T-T-A----ATCAATAT--GGA-GAAAAAGGTAGATAG----ACTAA---TGCTGTG-
gi|18 : TTAGTGCATAACTAGTC-TTA-A----CTCATTAT--AGGCCAAAAACGTAGATAG----ACTAG---TTTTcccttgaaatgtacatcaaacgatacatt
gi|9 : gTTAGTGCAAAACTAGTCTT-A-A----CTCTTTAA--ACACAAAGGCGGAAGATAG----AATAG---TTTTGCG-t
gi|13 : tGCGAAACTAGTT-T-A-A----TTCGATAT--GGATTAAGAAGGTAGAAAG----AGTAG---TTTTGctaaagctaaacaaactgaactattgcatcaatgaaaagaatgctt
gi|16 : agcgacacaatatactaaaccaaaagctacagAGACTAGTC-T-A-A----CTCATTAT--ATACAAAGAATGTAAATAA----AATAG---TTTTGCA-GTAAG-CC-TT----CGA-GATATA-T-Tagccaaac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ACATTTCGAGCGCCAGATGCAGAAAAAATCAATCTTAGTACAAAATAAGGAGGTAGATAGACACGTTTCATGTTAAGACTATTTGATTTTAT
Unaligned ( gi|17 ): GGACTGACACTTTTTTTTTAATTGTCTTAAGTTGATATTTGAACTTCGAACAATTGTGTGGTATCTGA
Alignments
lowQualScore : 4444444 22222222 1 1 33333333 11 1 3333333333333 11 111 1111 333 222
lowQualScore : 2 66 6 0 1 66 1111111 4 2 4 2 5555 2 2 2 1 3 00000000 666 4 5 0 11111111 22 4 0 1111111111111 44 1 1 444 11 3333 7 000 6 333
lowQualScore : . .. . . . .. ....... . . . . .... . . . . . ........ ... . . . ........ .. . . ............. .. . . ... .. .... . ... . ...
lowQualScore : 5 55 7 8 0 00 1111111 0 9 4 2 0000 4 4 9 0 1 77777777 444 0 5 0 88888888 55 2 0 1111111111111 77 0 0 777 77 7777 3 777 7 333
consensus : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATATT-GT-CATACCGAGGGCTTAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC-TAAG-CCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAGCGTTATCC-TGTTTTCGTTT---TTATAGT
Reference ( family-2155 ) : NNNNNNNNNNTGCCAATTGTATAACAATTCAGCTTGTNACNTANTAGT-CATACTGAGGGCTTAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC-TNAG-CCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAACAGTGAA---CACTCTTTGTNTANGACTCAGTNCATAGCGTTATCCGTGTTTTTGTTT---TTATAGT
gi|1 : TGCAAATCATATGTGAATTAAG---GTAACTTACTGGTTCATACTGAGGACTTAGTGCAAAACTAGTCT-A-A----TTCAATATTGACTA-AGAAGGTAGAGAGATTAGTTTTGCGA-TTAG-CCCT----C---AAT---ACA-TTCTTGCAA-AGGA-A----GCA-GTTG-TATAAATATTGAATGTCA-TC-TTGTTTAAAACTT-GTTTACAGTATT-T---TGTTTTC-TTTATATTATAGT
gi|10 : attttaatcaGTAACATAATAGT-AATATTAAAG-CTTAACGCAAAACTAGTCT-A-A----CTCAATATCAACTA-AGAAGAAAGTTAGGCT--TTTTGCGCATCAATCTCT----C---AGC---ATG-TT
gi|11 : GAGCACTTGGTGCATAACTAGTCT-A-A--------ATAAAGACTA-AGTAGGTAGATAGACAAGTTTTGCAG-TAAG-CCTC----T---GATTTCATA--TCTTGC
gi|12 : ttcTAAGAACTTGGTGTAAAACTGGTTT-A-A----TTCAATATAGAAAC-AGAATGAAGATAGACTAATTTTGCccacaaat
gi|13 : attgtttgatacccaaaatattgttGCGAAACTAGTTT-A-A----TTCGATATGGATTA-AGAAGGTAGAAAGAGTAGTTTTGAGC-CAAA-Ccc
gi|14 : agcgacacaatatactaaaccaaaagctacagTGCAGAAAAAATCA-A-T----CTTAGTACAAAATA-AGGAGGTAGATAGACACGTTTCATGT-TAAG-
gi|15 : acatttcgagcgccagaCTAAATGCCAAACTATTCT-T-A----ATCAATATGGAG-A-AAAAGGTAGATAGACTAAT-----GC-TGTG-CCCT----TGA-AAT---GTA-actatttgattttat
gi|16 : TCAGCTCGTAA-ATAT------ATCTCGAAGGCTTACTGCAAAACTATTTT-A-catcaaacgatacatt
gi|16 : aAGACTAGTCT-A-A----CTCATTATATACAA-AGAATGTAAATAAAATAGTTTTGCAG-TAAG-CCTT----CGA-GAT---ATA-TTtttacattctttgtatataatgagttagactagtct
gi|18 : atcagctcgtaTTAGTGCATAACTAGTCTTA-A----CTCATTATAGGCCA-AAAACGTAGATAGACTAGTTTT
gi|2 : gGAAAGCTTAGTGCAAAACTAGTTT-T-A----CTCAATATAGAGTA-AGAAGGTAGATATATCAGTATTGTGC-TGAG-CACTCGAAC---AGT---ATA-CTC-----A-AGGATAAAATGCA-GTAG-TGTATA----GAA---CACTCTTTGTATATGACTCAGTATATAGCGTTATTTGTGTTTTTGTTT---TTATAGTt
gi|3 : cAGGACTTGGTGTAAAACCATTGT-A-A----CTTAATATAGTGAA-AGAAGGCAGATAGACTAGTTCTGCAC-TA----CTT----C---CAT---AAA-TT-TTACA
gi|4 : aagatcaacacttttttattttaatcattttcaattaatatttgacatttcttgaacaattgtgtgatatttgacttttcaTGCAAAATATT--T-TATA-TGAGGGCTTAGTGCAAAACTAAGCT-A-A----CTCGGTGTAGACAA-AGAAGGAAGATAAACTAGTGTTG
gi|5 : acttctttgtttttaactccattaataattccacttgttttgaaaatgtatgAGGGCTTGGTACAAAACTAGTTT-A-A----GTCAATATATACTA-GGAACTTAGATAGATTAGTTTTGCGC-TGAA-TC------T---AAG---ACA-TAC-TGTAATAG--------GCA--TCG-TATAAACAGTG--------TCT---TATCGGACTTA-TTCA-A--GTTATCC-TGTTTTTGTTT---TTtcatggtataacaatatactgcaggtatg
gi|6 : ttaaaaataaTGCCAATTGTATAACAATTCAGCTTGTCACCTA------CATGTCGGGGACTAAGTGCAAAACTAGTCT-ATA----CACCATTTTGTCTATAGTGAGT---TAAACTAATATTGCAT-TTAG-CCCT----C---TAT---GTAGTTC--ACAA-GAAA-A----GCATGCTGATACAAATAATGAA---taat
gi|7 : TACCGAGGGCTTGGTGCAAAATCAAATT-A-AAATACTCAGTATAGATTA-AGAAGGTGGATAGACAAATTCTGCGC-CAAG-CCCT----CAGTAAT---ATA-TTCt
gi|8 : aatgtggtgtgaaaaacacagtg-CATGCTGAG---CTAGTGCAAAACTAGT-T-A-A----TTCAATATAGGCTA-AAATGGCAGATGGTCTAGTATTGTGC-CAGG-CCCT----A---AAT---acccaaaatgag
gi|9 : tttgttgatttgatagtacagacatcaagtgaaTTAGTGCAAAACTAGTCTTA-A----CTCTTTAAACACAA-AGGCGGAAGATAGAATAGTTTTGCGC-TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGACTGACACTTTTTTTTTAATTGTCTTAAGTTGATATTTGAACTTCGAACAATTGTGTGGTATCTGA
Alignments
lowQualScore : 22222222 22222222 1 1 33333333 11 1 1 22222222 11 11 2 111 222
lowQualScore : 1 22 999 4 99999999 3 11 2 4 2 5555 2 2 33 00000000 666 4 5 0 11111111 22 4 0 3 0 88888888 44 1 44 7 3 444 77 333
lowQualScore : . .. ... . ........ . .. . . . .... . . .. ........ ... . . . ........ .. . . . . ........ .. . .. . . ... .. ...
lowQualScore : 0 00 333 3 11111111 0 66 4 4 2 0000 4 4 99 77777777 444 0 5 0 88888888 55 2 0 2 8 44444444 77 0 00 3 3 777 33 333
consensus : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATANT-G--TCATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
Reference ( family-2155 ) : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATATT-G--TCATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAGCGTTATCC-TGTTTTCGTTT---TTATAGT
gi|1 : TGCAAATCATATGTGAATTAAG---GTAACTTACT-GGTTCATACTGAGGACT-TAGTGCAAAACTAGTCT-A-A----TTCAATATTGACTA-AGAAGGTAGAGAGATTAGTTTTGCGA--TTAGCCCT----C---AAT---ACA-TTCTTGCAA-AGGA-A----GCA-GTTG-TATAAATATTGAATGTCA-TC-TTGTTTAAAACTT-GTTTACAG---TATTT-TGTTTTC-TTTATATTATAGT
gi|10 : attttaatcaGTAACATAATAG--TAATATTAAAG-CT-TAACGCAAAACTAGTCT-A-A----CTCAATATCAACTA-AGAAGAAAGTTAGGCT--TTTTGCGCATCAATCTCT----C---AGC---ATG-TT
gi|11 : CGAGCACT-TGGTGCATAACTAGTCT-A-A--------ATAAAGACTA-AGTAGGTAGATAGACAAGTTTTGCAG--TAAGCCTC----T---GATTTCATA--TCTTGC
gi|12 : ttAAAATATT-G--TT-TA---AGAACT-TGGTGTAAAACTGGTTT-A-A----TTCAATATAGAAAC-AGAATGAAGATAGACTAATTTTGCccacaaat
gi|13 : attgtttgatacccACCAAAAGCTACAG-GCGAAACTAGTTT-A-A----TTCGATATGGATTA-AGAAGGTAGAAAGAGTAGTTTTGAGC--CAAACcc
gi|14 : agcgacacaatatactaaCATTTCGAGCGCC-AGATGCAGAAAAAATCA-A-T----CTTAGTACAAAATA-AGGAGGTAGATAGACACGTTTCATGT--TAAG
gi|15 : aCT-AAATGCCAAACTATTCT-T-A----ATCAATATGGAG-A-AAAAGGTAGATAGACTAAT-----GC--TGTGCCCT----TGA-AAT---GTA-actatttgattttat
gi|16 : TCAGCTCGTAA-ATAT-------ATCTCGAAGGCT-TACTGCAAAACTATTTT-A-catcaaacgatacatt
gi|16 : aAGACTAGTCT-A-A----CTCATTATATACAA-AGAATGTAAATAAAATAGTTTTGCAG--TAAGCCTT----CGA-GAT---ATA-TTtttacattctttgtatataatgagttagactagtct
gi|18 : atcagctcgtaT-TAGTGCATAACTAGTCTTA-A----CTCATTATAGGCCA-AAAACGTAGATAGACTAGTTTT
gi|2 : gCGAAAGCT-TAGTGCAAAACTAGTTT-T-A----CTCAATATAGAGTA-AGAAGGTAGATATATCAGTATTGTGC--TGAGCACTCGAAC---AGT---ATA-CTC-----A-AGGATAAAATGCA-GTAG-TGT--ATA--GAA---CACTCTTTGTATATGACTCAGTATATAGCGTTATTTGTGTTTTTGTTT---TTATAGTt
gi|3 : CAAGGACT-TGGTGTAAAACCATTGT-A-A----CTTAATATAGTGAA-AGAAGGCAGATAGACTAGTTCTGCAC--TA---CTT----C---CAT---AAA-TT-TTACA
gi|4 : aagatcaacacttttttattttaatcattttcaattaatatttgacatttcttgaacaattgtgtgatatttgacttttGCAAAATATT----TTATAT-GAGGGCT-TAGTGCAAAACTAAGCT-A-A----CTCGGTGTAGACAA-AGAAGGAAGATAAACTAGTGTTG
gi|5 : acttctttgtttttaactccattaataattccacttgttttgaaaatgtatgtAGGGCT-TGGTACAAAACTAGTTT-A-A----GTCAATATATACTA-GGAACTTAGATAGATTAGTTTTGCGC--TGAATC------T---AAG---ACA-TAC-TGTAATAG--------GCA--TCG-TATAAACAGTG--------TCT---TATCGGACTTA-TT--CAA-GTTATCC-TGTTTTTGTTT---TTtcatggtataacaatatactgcaggtatg
gi|6 : ttaaaaataaTGCCAATTGTATAACAATTCAGCTTGTCACCTA-------CATGTCGGGGACT-AAGTGCAAAACTAGTCT-ATA----CACCATTTTGTCTATAGTGAGT---TAAACTAATATTGCAT--TTAGCCCT----C---TAT---GTAGTTC--ACAA-GAAA-A----GCATGCTGATACAAATAATGAA---taat
gi|7 : AACACAGT-G--T---ACCGAGGGCT-TGGTGCAAAATCAAATT-A-AAATACTCAGTATAGATTA-AGAAGGTGGATAGACAAATTCTGCGC--CAAGCCCT----CAGTAAT---ATA-TTCt
gi|8 : aatgtggtgtgaaaCATGCTGAG---C-TAGTGCAAAACTAGT-T-A-A----TTCAATATAGGCTA-AAATGGCAGATGGTCTAGTATTGTGC--CAGGCCCT----A---AAT---acccaaaatgag
gi|9 : tttgttgatttgatagtacagacatcaagtgaaT-TAGTGCAAAACTAGTCTTA-A----CTCTTTAAACACAA-AGGCGGAAGATAGAATAGTTTTGCGC--TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGACTGACACTTTTTTTTTAATTGTCTTAAGTTGATATTTGAACTTCGAACAATTGTGTGGTATCTGA
Alignments
lowQualScore : 33333333 22222222 1 1 33333333 11 1 1 22222222 11 11 22 1 222
lowQualScore : 1 22 999 4 22222222 3 11 2 4 2 5555 2 2 33 00000000 666 4 5 0 11111111 22 4 0 3 0 88888888 44 1 44 7 00 3 77 333
lowQualScore : . .. ... . ........ . .. . . . .... . . .. ........ ... . . . ........ .. . . . . ........ .. . .. . .. . .. ...
lowQualScore : 0 00 333 5 33333333 0 66 4 4 2 0000 4 4 99 77777777 444 0 5 0 88888888 55 2 0 2 8 44444444 77 0 00 3 00 3 33 333
consensus : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATANT-G--TCATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
Reference ( family-2155 ) : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATANT-G--TCATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
gi|1 : TGCAAATCATATGTGAATTAAG---GTAACTTACT-GGTTCATACTGAGGACT-TAGTGCAAAACTAGTCT-A-A----TTCAATATTGACTA-AGAAGGTAGAGAGATTAGTTTTGCGA--TTAGCCCT----C---AAT---ACA-TTCTTGCAA-AGGA-A----GCA-GTTG-TATAAATATTGAATGTCA-TC-TTGTTTAAAACTT-GTTTACAG---TATTT-TGTTTTC-TTTATATTATAGT
gi|10 : attttaatcaGTAACATAATAG--TAATATTAAAG-CT-TAACGCAAAACTAGTCT-A-A----CTCAATATCAACTA-AGAAGAAAGTTAGGCT--TTTTGCGCATCAATCTCT----C---AGC---ATG-TT
gi|11 : CGAGCACT-TGGTGCATAACTAGTCT-A-A--------ATAAAGACTA-AGTAGGTAGATAGACAAGTTTTGCAG--TAAGCCTC----T---GATTTCATA--TCTTGC
gi|12 : ttAAAATATT-G--TT-TA---AGAACT-TGGTGTAAAACTGGTTT-A-A----TTCAATATAGAAAC-AGAATGAAGATAGACTAATTTTGCccacaaat
gi|13 : attgtttgatacccAATATACT------AAACCAAAAGCTACAG-GCGAAACTAGTTT-A-A----TTCGATATGGATTA-AGAAGGTAGAAAGAGTAGTTTTGAGC--CAAACcc
gi|14 : agcgacacCATTTCGAGCGCC-AGATGCAGAAAAAATCA-A-T----CTTAGTACAAAATA-AGGAGGTAGATAGACACGTTTCATGT--TAAG
gi|15 : aCT-AAATGCCAAACTATTCT-T-A----ATCAATATGGAG-A-AAAAGGTAGATAGACTAAT-----GC--TGTGCCCT----TGA-AAT---GTA-actatttgattttat
gi|16 : TCAGCTCGTAA-ATAT-------ATCTCGAAGGCT-TACTGCAAAACTATTTT-A-catcaaacgatacatt
gi|16 : aAGACTAGTCT-A-A----CTCATTATATACAA-AGAATGTAAATAAAATAGTTTTGCAG--TAAGCCTT----CGA-GAT---ATA-TTtttacattctttgtatataatgagttagactagtct
gi|18 : atcagctcgtaT-TAGTGCATAACTAGTCTTA-A----CTCATTATAGGCCA-AAAACGTAGATAGACTAGTTTT
gi|2 : gCGAAAGCT-TAGTGCAAAACTAGTTT-T-A----CTCAATATAGAGTA-AGAAGGTAGATATATCAGTATTGTGC--TGAGCACTCGAAC---AGT---ATA-CTC-----A-AGGATAAAATGCA-GTAG-TGT--ATA--GAA---CACTCTTTGTATATGACTCAGTATATAGCGTTATTTGTGTTTTTGTTT---TTATAGTt
gi|3 : CAAGGACT-TGGTGTAAAACCATTGT-A-A----CTTAATATAGTGAA-AGAAGGCAGATAGACTAGTTCTGCAC--TA---CTT----C---CAT---AAA-TT-TTACA
gi|4 : aagatcaacacttttttattttaatcattttcaattaatatttgacatttcttgaacaattgtgtgatatttgacttttGCAAAATATT----TTATAT-GAGGGCT-TAGTGCAAAACTAAGCT-A-A----CTCGGTGTAGACAA-AGAAGGAAGATAAACTAGTGTTG
gi|5 : acttctttgtttttaactccattaataattccacttgttttgaaaatgtatgtAGGGCT-TGGTACAAAACTAGTTT-A-A----GTCAATATATACTA-GGAACTTAGATAGATTAGTTTTGCGC--TGAATC------T---AAG---ACA-TAC-TGTAATAG--------GCA--TCG-TATAAACAGTG--------TCT---TATCGGACTTA-TT--CAA-GTTATCC-TGTTTTTGTTT---TTtcatggtataacaatatactgcaggtatg
gi|6 : ttaaaaataaTGCCAATTGTATAACAATTCAGCTTGTCACCTA-------CATGTCGGGGACT-AAGTGCAAAACTAGTCT-ATA----CACCATTTTGTCTATAGTGAGT---TAAACTAATATTGCAT--TTAGCCCT----C---TAT---GTAGTTC--ACAA-GAAA-A----GCATGCTGATACAAATAATGAA---taat
gi|7 : AACACAGT-G--T---ACCGAGGGCT-TGGTGCAAAATCAAATT-A-AAATACTCAGTATAGATTA-AGAAGGTGGATAGACAAATTCTGCGC--CAAGCCCT----CAGTAAT---ATA-TTCt
gi|8 : aatgtggtgtgaaaCATGCTGAG---C-TAGTGCAAAACTAGT-T-A-A----TTCAATATAGGCTA-AAATGGCAGATGGTCTAGTATTGTGC--CAGGCCCT----A---AAT---acccaaaatgag
gi|9 : tttgttgatttgatagtacagacatcaagtgaaT-TAGTGCAAAACTAGTCTTA-A----CTCTTTAAACACAA-AGGCGGAAGATAGAATAGTTTTGCGC--TAA
blockSeqs : C AC CTC C ATAGTA T CA A T T AATA T T AT CGAAC TTC G T T GATAAAAT TG A A A G AACAC TT T AG T CG G TG .
blockSeqs : CTT A TTGTT C AA . T . . T . . CAGT . . T . AAA G C . A A . T G A . G . TG .
blockSeqs : T TTTT T AG . . . . A . . TGA . . . . . . T . . .
blockSeqs : A GTGT T CG . . . . T . . CGA . . .
blockSeqs : C CT T GG . . . . T . . C . . .
blockSeqs : C T T AG . . . . A . . T . .
blockSeqs : . C C GA . . . . C . . C . .
blockSeqs : C GG . . . . T . . T . .
blockSeqs : . GG . . . . A . . C . .
blockSeqs : GA . . . . A . . A .
blockSeqs : GG . . . . T . .
blockSeqs : G . . . . T . .
blockSeqs : . . . . . T . .
blockSeqs : . . . . T .
blockSeqs : . . . . A .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : TT******
originalCons : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATANT-G--TCATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
finalCons : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATATT------ATACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGACTGACACTTTTTTTTTAATTGTCTTAAGTTGATATTTGAACTTCGAACAATTGTGTGGTATCTGA
Alignments
lowQualScore : 222222222222 22222222 1 1 33333333 11 1 1 22222222 11 11 22 1 222
lowQualScore : 1 22 999 3 111111111111 2 11 2 4 2 5555 2 2 33 00000000 666 4 5 0 11111111 22 4 0 3 0 88888888 44 1 44 7 00 3 77 333
lowQualScore : . .. ... . ............ . .. . . . .... . . .. ........ ... . . . ........ .. . . . . ........ .. . .. . .. . .. ...
lowQualScore : 0 00 333 4 000000000000 4 66 4 4 2 0000 4 4 99 77777777 444 0 5 0 88888888 55 2 0 2 8 44444444 77 0 00 3 00 3 33 333
consensus : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATANT-----A----TACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
Reference ( family-2155 ) : NNNNNNNNNNTGCNAATCGTATGNNAATTCAGCTCGTAACATATT-----A----TACCGAGGGCT-TAGTGCAAAACTAGTCT-A-A----CTCAATATAGACTA-AGAAGGTAGATAGACTAGTTTTGCGC--TAAGCCCT----C---AAT---ATA-TTCTTGCAA-AGGA-A----GCA-GTCG-TATAAATANTGAA---CA-TCTTTGTATANGACTTAGTTTACAG-GTTATTT-TGTTTTCGTTT---TTATAGT
gi|1 : TGCAAATCATATGTGAATTAAG---GTAACTTACTGGTTCA----TACTGAGGACT-TAGTGCAAAACTAGTCT-A-A----TTCAATATTGACTA-AGAAGGTAGAGAGATTAGTTTTGCGA--TTAGCCCT----C---AAT---ACA-TTCTTGCAA-AGGA-A----GCA-GTTG-TATAAATATTGAATGTCA-TC-TTGTTTAAAACTT-GTTTACAG---TATTT-TGTTTTC-TTTATATTATAGT
gi|10 : attttaatcaGTAACATAAT-----AGTAATATTAAAG-CT-TAACGCAAAACTAGTCT-A-A----CTCAATATCAACTA-AGAAGAAAGTTAGGCT--TTTTGCGCATCAATCTCT----C---AGC---ATG-TT
gi|11 : CGAGCACT-TGGTGCATAACTAGTCT-A-A--------ATAAAGACTA-AGTAGGTAGATAGACAAGTTTTGCAG--TAAGCCTC----T---GATTTCATA--TCTTGC
gi|12 : ttAAAATATT-----G----T-TTAAGAACT-TGGTGTAAAACTGGTTT-A-A----TTCAATATAGAAAC-AGAATGAAGATAGACTAATTTTGCccacaaat
gi|13 : attgtttgatacccAATATACT-----A----AACCAAAAGCTACAG-GCGAAACTAGTTT-A-A----TTCGATATGGATTA-AGAAGGTAGAAAGAGTAGTTTTGAGC--CAAACcc
gi|14 : agcgacacCGAGCGCC-AGATGCAGAAAAAATCA-A-T----CTTAGTACAAAATA-AGGAGGTAGATAGACACGTTTCATGT--TAAG
gi|15 : acatttCT-AAATGCCAAACTATTCT-T-A----ATCAATATGGAG-A-AAAAGGTAGATAGACTAAT-----GC--TGTGCCCT----TGA-AAT---GTA-actatttgattttat
gi|16 : TCAGCTCGTAA-ATAT------A----TCTCGAAGGCT-TACTGCAAAACTATTTT-A-catcaaacgatacatt
gi|16 : aAGACTAGTCT-A-A----CTCATTATATACAA-AGAATGTAAATAAAATAGTTTTGCAG--TAAGCCTT----CGA-GAT---ATA-TTtttacattctttgtatataatgagttagactagtct
gi|18 : atcagctcgtaT-TAGTGCATAACTAGTCTTA-A----CTCATTATAGGCCA-AAAACGTAGATAGACTAGTTTT
gi|2 : gCGAAAGCT-TAGTGCAAAACTAGTTT-T-A----CTCAATATAGAGTA-AGAAGGTAGATATATCAGTATTGTGC--TGAGCACTCGAAC---AGT---ATA-CTC-----A-AGGATAAAATGCA-GTAG-TGT--ATA--GAA---CACTCTTTGTATATGACTCAGTATATAGCGTTATTTGTGTTTTTGTTT---TTATAGTt
gi|3 : CAAGGACT-TGGTGTAAAACCATTGT-A-A----CTTAATATAGTGAA-AGAAGGCAGATAGACTAGTTCTGCAC--TA---CTT----C---CAT---AAA-TT-TTACA
gi|4 : aagatcaacacttttttattttaatcattttcaattaatatttgacatttcttgaacaattgtgtgatatttgacttttAATATTTT-----A----TAT-GAGGGCT-TAGTGCAAAACTAAGCT-A-A----CTCGGTGTAGACAA-AGAAGGAAGATAAACTAGTGTTG
gi|5 : acttctttgtttttaactccattaataattccacttgttttgaaaatgtatgtgcaaAGGGCT-TGGTACAAAACTAGTTT-A-A----GTCAATATATACTA-GGAACTTAGATAGATTAGTTTTGCGC--TGAATC------T---AAG---ACA-TAC-TGTAATAG--------GCA--TCG-TATAAACAGTG--------TCT---TATCGGACTTA-TT--CAA-GTTATCC-TGTTTTTGTTT---TTtcatggtataacaatatactgcaggtatg
gi|6 : ttaaaaataaTGCCAATTGTATAACAATTCAGCTTGTCACCTA-C-----A----TGTCGGGGACT-AAGTGCAAAACTAGTCT-ATA----CACCATTTTGTCTATAGTGAGT---TAAACTAATATTGCAT--TTAGCCCT----C---TAT---GTAGTTC--ACAA-GAAA-A----GCATGCTGATACAAATAATGAA---taat
gi|7 : AACACAGT-----G----TACCGAGGGCT-TGGTGCAAAATCAAATT-A-AAATACTCAGTATAGATTA-AGAAGGTGGATAGACAAATTCTGCGC--CAAGCCCT----CAGTAAT---ATA-TTCt
gi|8 : aatgtggtgtgaaa-----A----TGCTGAG---C-TAGTGCAAAACTAGT-T-A-A----TTCAATATAGGCTA-AAATGGCAGATGGTCTAGTATTGTGC--CAGGCCCT----A---AAT---acccaaaatgag
gi|9 : tttgttgatttgatagtacagacatcaagtgaacT-TAGTGCAAAACTAGTCTTA-A----CTCTTTAAACACAA-AGGCGGAAGATAGAATAGTTTTGCGC--TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGACTGACACTTTTTTTTTAATTGTCTTAAGTTGATATTTGAACTTCGAACAATTGTGTGGTATCTGA