lowQualScore : 111111111111111111111 11111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111 2222222222222222222222222222222222222222222222222222222222222222222222 11111111111111
lowQualScore : 1 11 3333 1 33333 888888888888888888888 22 333333333 55555555555555 1 4 666 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 6666666666666 111 1 33 1 1 22 7777777777777777777777777 11111 111 444444 2 1 33 777777777 2222 1111 111 1 1 6666666666666666666666666666666 22 1 44444444444 333333333333 1 2222 1 99999999999999 22222 1 1 1 77777777777777777 22 1 111 5555555555555555555555555555 1 11 1 111 1111 5555555555 1111 2222 1 2 111111111111 2222 22222 22 333333333 5555555555555555555555555555555555555555555555555555555555555555555555 1 1 00000000000000
lowQualScore : 0 6 5 55 1111 3 66 1 1 33333 333333333333333333333 0 33 333 88 8 111111111 00000000000000 5 0 111 6 5 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888 2 0 1111111111111 7 111 5 22 6 6 5 2 7 66 4444444444444444444444444 3 6 55555 1 111 111111 7 0 2 3 6 44 2 1 6 888888888 3 0000 1111 666 5 0 8 8888888888888888888888888888888 6 2 33 5 6 1 22222222222 7 7 8 444444444444 3 8888 5 6 77777777777777 55555 3 9 0 7 2 22222222222222222 0 6 11 5 444 3333333333333333333333333333 6 1 5 00 99 99 6 3 444 2222 2222222222 4444 5555 8 9 3 2 0 888888888888 7 2222 6 6 00000 1 5 0 00 8 333333333 7 5 5 7 6 6 1 3 44 3 2 6666666666666666666666666666666666666666666666666666666666666666666666 5 5 88888888888888
lowQualScore : . . . .. .... . .. . . ..... ..................... . .. ... .. . ......... .............. . . ... . . . ................................................................................ . . ............. . ... . .. . . . . . .. ......................... . . ..... . ... ...... . . . . . .. . . . ......... . .... .... ... . . . ............................... . . .. . . . ........... . . . ............ . .... . . .............. ..... . . . . . ................. . . .. . ... ............................ . . . .. .. .. . . ... .... .......... .... .... . . . . . ............ . .... . . ..... . . . .. . ......... . . . . . . . . .. . . ...................................................................... . . ..............
lowQualScore : 7 0 3 00 7777 3 77 2 4 88888 666666666666666666666 8 88 000 88 0 555555555 00000000000000 0 0 000 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000 2 0 0000000000000 3 000 0 00 0 0 0 5 0 55 3333333333333333333333333 5 3 22222 0 777 777777 3 0 0 5 7 77 8 0 7 555555555 5 0000 8888 888 0 0 2 3333333333333333333333333333333 0 5 88 3 7 0 00000000000 0 3 3 000000000000 3 3333 0 0 22222222222222 00000 3 7 7 0 0 88888888888888888 2 0 00 8 000 4444444444444444444444444444 0 7 3 22 22 22 0 3 555 3333 8888888888 6666 8888 2 2 5 7 1 444444444444 3 7777 7 7 22222 7 3 8 44 0 000000000 3 7 7 3 0 5 0 2 33 0 5 5555555555555555555555555555555555555555555555555555555555555555555555 0 0 00000000000000
consensus : NNNTGAAAATTTTATATTT-AAGAACTTGACTA---TTTT-AATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA--TTTTA---TATTTGTACATAGTTTT-GGAGTT-GTTAGAGA---TNA---AGATTGCTTAGT-ATATGAG-----TAAGCAGTTA-AAAATA--GTTATATACATGCAGTTTAGTATATAACTGTCATTG---GT-T------ATG------TTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAAC-C-CA------GTTTACCAAA-CTGGATCCTAACAATTTCATGAAAATGC-TTCT-----TGCACAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGCCTCAATCCCAACTGCGCCAAACGAAGNAGA--TCTGTATG--T--TTC---ACA-TGTCTGTCGGAGCAGATATATGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTTTTGGTTCAT--TGACT-TGGAAACAAATATC----TA-AGTATATA---TAGG--ATTCCTCTGCAAGAGAAGACTCGAGCCTTAA--NGGTTATGGATAA--NGA-TTANA-----ATCTGGTTAGAATATGAAA-TAATTG-CTATCGAAC-TTTGTT-TAAGGGCTTAAATCAGTTTAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTT-ATATACACT-----GT-AGC-GACAATTTCCATGTTT-CCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT-C--AC-CCATT--TGTTTGT-----GCTTTCACAATTTAGTGTC-CAGTCTG--TA--TATAACCATCTCACATTACCATGC-AAA-C-ATTGAGAAT---TTATA--A-A---ATAT--ATCA---TTCAAGGATATGTTTTGCACAAATTCCA-AATACTTTA-----ACCTTCAATGTTGAAGAAAA-A-ATCG--CTTAAATGTACTGAAATGGGCGAA-AGANGA----TGTTTATAATTTCGTGTCT-GTC-ACAACTTTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCNTTNAGACTNTCGTNT-TAAGAGGCGTT-TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATG
Reference ( gi|1 ) : TTATGAAAATTCTATGTTTTAAGAACAGGACTA---ATTT-AATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATA-ATTTCAAATTATTTATACATAGTTTTCGGAGTT-GTTAGAGA---TCA---AGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG---AT-T------ATG------CTT---AAGGCTTT-------TGCCTATATTTT-C----AATTGAA-----A------GTTTATCAAA-CTGGATCCTAACAATTTCATGAAAAGGCCTTCT-----TGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGA--TTGGTAT---T--CTT---AC--TGTCTGTCGGAGCAGATGTATGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATATCAGACTG-AGTATATT---TATG--ATTCCTCTGCTACAGAACACTCGAGCCTTAA--TTGCTATGGATAA--TGA-TTATA-----ATTTGGTTAGAATATGAA--TAATTGTCTCTTAAACCTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTG-ATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTT-CCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----AT-TCATT--TATTTCG-----GCTTTCACAATTTATTGTC-TAGTCTG--TA--TATAACCATTTTACATTACCATGC-AAA-C-ATTGAGAAC---TTACA--A-----ATGT--ATCT---TTTAAGGATATATTTTACACAAATTCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA-A-AGCT--CTTAAATGTATTGAAATTTGCAAA-AGAGGG----TTTTTATAATTCCATGTCT-GTC-ATAACCTTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGAC-CTTTTTTCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATGTCAACCCAACGTTTGGGCAATTTGTCCGGAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATTTAGAATATCATATTACAGTTATTCA
gi|6 : TGAAAATTCTGTATTTGACGAACATGACTG---TTCT-AATTTGAATTGATGACATCATCATTTCATTTTCTGA------TGTCATTG--CTTTTATT-TTTTTA---TATTTGTACATAA-TTTGGGAGTT-GTTAGATAAATTTA---AGATAGTTTAGT-ATATAA
gi|7 : attTGAAAATTTTATATTT-GAGAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCATT---------TATATTTGA---CATGTGTACATAATCT-AAGAGTT-GTCAGAGA---TAATTTAGATTcgatcattggttcatgtgatgttttaaggttttgtctatattttacaattggactcacattttaccaaaactggattctaacaagttcatgaaaatgaaaatgccaatcgtttgtgaaaatataaagttataatcatccggtaaagtttgtcttaatctcaactgagccaaatgaagaagaaccaaatatgtttcacattgtctgtcggaatagatatattggtgtaagggactaagtttatagcttaagccttgtcttgttttataaattggtttattgactttgaaacaaatataagtatatataggattcccctgcaagagaagactgaagccttaagggttatgaaaaaggagttgtatctggttataatatataagtttt
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAAATATTTTATATTTTAAGAACTTGACTA---TTTT-GATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT-------TTTTACAGT-TTTA-ACATAGTTTT-GGAGTT-GTTAtaggaactaagatagtttaaaccttatcttattttatag
gi|2 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATGACATCATAATTCCATTTTGTGATGTCATTGTCATT----TT-------TTTTA---TATTTGTACAT--TATTTGGGATTAGTTAGAGA---
gi|9 : gATTTTATGATGTCATTGTCATT--------ATA---TTTAA--CATTTGTTCATAGTTT---GGGAT-GTTAGAGA---TCG---CGACTGCTTAG------GAG-----TAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTG---GC-C------ATGTGATGTTTT---ATAGCTTT-------TGTCTATATTTT-CTAAAAAT--AACGTTCA------GTTTACCAAA-CTGGATCCTAACAATTTCATGAAAATACCTTCT-----TGCACAATACTTTGTGAAAATATAAAagtttagatagttagatacaattgtcattgattatgtgatgttttatagcgttgtctatatttttcaattgaaactcactgtttcccaaactggagcctaacaatgtcatgaaagtgcttcttgaaaaatcatttgtgaaaatataaagttataatcatttggtaaaatttgcctcaatcccaattgcaccaaacaaaatagatctgtattggtttcaaactgtctaccagggcagatatttaagccggatcttattttataaatacgactgttggttcattaacttggaaataaatagcactatagttctatatgggatttctctgcaagagaagactgaaacttaaggtttatggataacttgataaaaatctgattagaatatgaaataatggctatcaaacatttgtttaatggctttaatcagttaaaattctggaaaaggaagaaattatactaatgtatatacactcaatttccatgtttcaccttcatttaatctccaactaattgattttttactatgaaattgtcatttatttgcatgtctgctcacccatttgttattgctttgacaatatagtgtccagcctgtagataaccgtctcacattaccatgcagaccattggaaatttatatcatacatttatcattaaaggatatgttttgcacaaatttcaaatactttacttcaatgttggaataaaaatcgcttaaatgtact
gi|6 : AGTTTAGTATATAACGATCATTG---GT-TCATGTGATG------TTTT--AAGG-TTT-------TGTCTATATTTTAC----AATTGGACTCACA------TTTTACCAAAACTGGATTCTAACAAGTTCATGAAAA-------TGAAAATGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATATG--T--TTC---ACATTGTCTGTCGGAATAGATATATTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA------TA-AGTATATA---TAGG--ATTCCCCTGCAAGAGAAGACTGAAGCCTTAA--GGGTTATGAAAAA--GGAGTTGT------ATCTGGTTATAATAT--A--TAAgtaacaagactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
gi|2 : atttgaaaattctgtatttgacgaacatgactgttctaatttgaattgatgacatcatcatttcattttctgatgtcattgcttttatttttttatatttgtacataatttgggagttgttagataaatttaagatATACAATTGTCATTG---AT-T------ATG--------T---GATGTTTTATAGCGTTGTCTATATTTTTC----AATTGAA-----ACTCACTGTTTCCCAAA-CTGGAGCCTAACAATGTCATGAAAGTGC-TTCT-----TGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGA--TCTGTAT---TGGTTTCAAAC--TGTCTACCAGGGC-----------------------AG---ATATTT---AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATAGCA--CTATAGT-TCTA---TATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTT--TATGGATAACTTGA-TAAAA-----ATCTGATTAGAATATGAAA-TAATGG-CTATCAAACATTTGTT-TAATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAA-TGTATATACACT--------------CAATTTCCATGTTT-CACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCAC-CCATT--TGTTATT-----GCTTTGACAATATAGTGTC-CAGCCTG--TA--GATAACCGTCTCACATTACCATGC-AGACC-ATTGGAAAT---TTATATCATAC--ATTT--ATCA---TTAAAGGATATGTTTTGCACAAATTTCA-AATACTTTAC-------TTCAATGTTGGAATAAA-A-ATCG--CTTAAATGTACTgtttt
gi|15 : gatgacatcataattccattttgtgatgtcattgtcattttttttatatttgtacattatttgggattagttagagaagtttagatagttagTAACTGTCACCGGGCATAT------ACG------TTTTGTAGCATTTT-------TGTTTATACTT------------AC-----A------GTTTATCAAA-CTGGAT
gi|3 : AGA--TCTGTATAGCT--TTC---ACAGTGTCTGTCGGAGCAGATATATGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTAT-TT-TATAAATGACTTTTGGTTC---ATGACTGTGAACACAAGTATC--AC-----TATATA---TAGG--ATTCCTCTGAAAGAGAAGACTCGAG------------------------GT-TTAGA-----ATCTGATTAGAATATGAA--TAATTGGCTCTTG---------TTTAAGAGC-TAAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATTT-ATATGCACTCTTTAGTTAGCTGAC
gi|9 : ---AC--TGGCTGTCGCAGCAGATATATAAGGTTTAGAGGATAAG---ATA--GTTCAAGCCTTACC--A---TATAGATATGATTTTTGGTTCAttagaaagtatcatttcttactatgaaattgtcatctgtctgcaattctacccatttgtttgtgctttcacatttagtgtccagtctgtatataaccatctcacattaccatgcaaaccattgagaacatattacaaatatctatcattcaaggatatgttttgcacaaattccaaaaactttaccttgaatgttgaacaaaaaatcccttaaatgcactaaaatgggcggaagataatatttataatttcatatctgtcacaactttgtaaccacttcacacaacattgttaaattttctttaagactctcctttaaaggcgttatgtcttaaaacaattttttcagtt
gi|7 : attttatgatgtcattgtcattatatttaacatttgttcatagtttgggatgttagagatcgcgactgcttaggagtaagcagttaaaaatagttatatacatgcaatttagtatataactgtcattggccatgtgatgttttatagcttttgtctatattttctaaaaataacgttcagtttaccaaactggatcctaacaatttcatgaaaataccttcttgcacaatactttgtgaaaatataaagtaacaagTGTCAGAGATAATTTA---GATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATA
gi|13 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcatttatatttgacatgtgtacataatctaagagtGTCGGAGTAGCTGTGTGG-TTTTAGAGGCTAAG---CTAGTT--AAAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATATC-------AGTATATT---TAAA--ATTCCCCTACTGAAGAAGACg
gi|4 : caTTTAAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTATA-ATTTTATA---TATG--ATTTCTCTGCAAGAGACGACTGAAACCTTAA--TGATTAT---TAA--TAA-CTACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAACCTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTT-ATATACACT--------------CAGTTTCCATGTTT-CCCCTTCATTAAAACTCCAGCTAAC---TAA--TATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCT----GC-TCACC--CATTT-GTTAGTGCTTTGACATTACAGGGTC-CAGCCTG--TA--TATA-CCATCTCACATTACCATGC-AAATC-ATTGAAAAT---TTATA--AGATACATCT--ATCA---TTCAAGGATATGTTTTGCACAAATTCCA-AATACTTTAC-------TTCAGTGTTGAAAAACA-A-AGCA--CTTAAATGTACTGAAATGGGCGAA-AGACAA----TGTTTATAATTTCATGTCT-ATC-ACAACTTTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTagaa
gi|5 : TAACAA----GGAAACAAATAT------G-AGTAACTTAAATAGA--ATGCCTCTGCTAGAGAAGTCTCGAGTCTTAA--GGGCTATGGATAC--GGA-TTA
gi|5 : catGTGAGCGGAAAATGTC-TTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---ATCTACCCA-ATGGCATTTGTATTT-------GCGTTCACAGTTTAGTGTCATA--CTG--TA--TATAATCATTTCACATTACCATGTAAAA-T-ACTGAGAAT---GTAT---T-----ATAT--ATCA---TTCAAGGTTATATTTTTTACAATTTCCA-AATAC-GT-T----ACCTTCAATTTT---GAAAATA-AGATACCTTAAATGTAATGAAATGGGTAAA-ACAGGA----TGTTTGTAATTTCATTTCC-GTC-ATAACTTTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGAC-ATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGgacacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|3 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgtctatatgccctaaagGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----AC-CCATT--TGTTTGT-----GCTTTCACA-TTTAGTGTC-CAGTCTG--TA--TATAACCATCTCACATTACCATGC-AAA-CCATTGAGAACATATTACA--A-----ATATCTATCA---TTCAAGGATATGTTTTGCACAAATTCCAAAA-ACTTTA------CCTTGAATGTTGAACAAAA-A-ATCC--CTTAAATGCACTAAAATGGGCGGA-AGATAA----TATTTATAATTTCATATCT-GTC-ACAACTTTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCTTT---AAAGGCGTT
gi|14 : agatctgtatagctttcacagtgtctgtcggagcagatatatgggttttaggggttatgatagtttaatccttatcttattttataaatgacttttggttcatgactgtgaacacaagtatcactatatataggattcctctgaaagagaagactcgaggtttagaatctgattagaatatgaataattggctcttgtttaagagctaaatcagtttaaattctggaggaaaaaatatgataccaatttatatgcactctttagttaTCATCTGTCTGCTGCATGTCT----AC-CCGTT--TGTTTGT-----ATTTTCACAATT-AGTGTC-CAGTCTG--TA--TATAACCATTTCACATTACACTGC-AAA-atgtcttaaaacaattttttcagtt
gi|11 : tgTTCACAATTTAATGTT-CAGTCCAATTACTTATAACCATTTCACACAACCAAACAAAA-C-ATTCAGAAC---T
gi|12 : gtctgtttgattgttaattttgtgtccagtctgtaactttgtaaccagtccaaataaccatttgaaactttcagaatttcaataccatcatatgatgagatgttacaccaaggatcaataatgttttgttcagtttagacagaattatttcccttaatgtaaagagaataTTGAGAAT---TTATA--AC----ATAC--ATCTGTATTCAAGGATAT----T---CAAA----ATAGT---------TTACCTTCAATTTTG---AAAA-ATATCG--CTTAATTGTACTGAAATGGGCAAA-AGA-GA----TGTATAGAAGTTCATGTCT-GTC-ATAACGTT
gi|16 : GAGATGTTTTGCACAAATTCCA-AATAC------ACAACCTTCAATGTTGttaatttaaccctctgtaaacaagtggttata
gi|10 : tcattatCAAGTTCCATAATGCT--------ACCTTCAGCAT---GGACAA-A-ATCA--ATCAGTTG-ATTGG--CTTGGAGGGAGAGGGACGATATTCACAATTGTGTGTCT-G----TAGGTTTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTaataaacat
gi|11 : TAATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTGAAACTTTCAGAATTTCgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|17 : gtctgtttgattgtAATTTTATCTCT-GTC-ACAACTATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCaataccatcatatgatgagatgttacaccaaggatcaataatgttttgttcagtttagacagaattatttcccttaatgtaaagagaatattcacaatttaatgttcagtccaattacttataaccatttcacacaaccaaacaaaacattcagaact
Alignments
lowQualScore : 11111111111111 1111111111111
lowQualScore : 2 1 2222 555555555555555 222222 111 11 222222 888888888888888888 1 11111 111 11 444444444444444444 111 22222222 55555555555555555555555555 333333 111 22222 22 11111 1111 111 555555555555 111 2222222 1 33333333333 111 2222 1 1 00000000000000 222222222 111 4444 111111 1111 1 111 22222222222222 1 222222222 11111 1111111 1111111 1 1111111111111 2 2222 2
lowQualScore : 0 0 77 1111 2 1 333333333333333 333333 555 44 00 6 9 222222 00 777777777777777777 2 0 1 44444 555 6 77 3 3 888888888888888888 0 666 1 66666666 33333333333333333333333333 8 777777 3 6 77 0 0 44 444 88888 00 44444 77 2222 888 3333 000 66 1 4 77 0 5 222222222222 0 000 2 6 5 3 1111111 1 0 8 66666666666 777 2 3 4 0000 66 0 0 0 3 88888888888888 0 6 33 1 77 1 1 1 000000000 0 222 111 2 6666 666666 888 0 3 0 2222 77 7 6 000 99999999999999 888 3 00 0 66 3 777777777 2 9 66 22222 6 00 1 1 5 0 2 4 4 55 66 222 2 1 1 1 6666666 8888888 5 2 77 3 0000000000000 66 66 3 2 0 9999 0
lowQualScore : . . .. .... . . ............... ...... ... .. .. . . ...... .. .................. . . . ..... ... . .. . . .................. . ... . ........ .......................... . ...... . . .. . . .. ... ..... .. ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . ........... ... . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... .............. ... . .. . .. . ......... . . .. ..... . .. . . . . . . . .. .. ... . . . . ....... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 0 0 00 2222 5 8 777777777777777 333333 222 22 00 7 8 222222 55 222222222222222222 5 0 2 88888 555 5 55 2 2 222222222222222222 8 666 0 88888888 22222222222222222222222222 0 555555 2 5 33 7 7 77 555 44444 88 33333 99 1111 000 4444 000 99 4 7 99 4 7 777777777777 7 000 1 7 2 3 7777777 0 6 0 00000000000 000 5 2 0 0000 88 0 0 8 6 66666666666666 6 2 88 0 00 0 0 0 444444444 8 444 777 5 7777 444444 666 7 9 1 1111 99 1 7 000 99999999999999 888 4 44 2 11 3 666666666 9 2 99 55555 5 44 4 1 9 8 4 4 4 22 11 111 0 6 0 0 7777777 0000000 0 5 00 0 0000000000000 00 55 0 5 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCGTTGTCATT----TT--ATA-TTTNA---CATTTGT-ACATAGTTTT-GGAGTTGTTAGAGATNA---AGATTGCTTAG-A-T-TGAGT-----AAGCAGTTA-GAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--TCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGTCTATCAAAC-CTTGTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACT---T--TA-CCTTCAATGTTGAANAAAA--AA-----TCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-TTAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTTTATATTT-AA-GAACTTGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTTA---TATTTGT-ACATAGTTTT-GGAGTTGTTAGAGATNA---AGATTGCTTAGTA-TATGAGT-----AAGCAGTTA-AAAATA--GTTATATACATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--CCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGCCTCAATCCCAACTGCGCCAAACGAAGNAGATCT--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTTTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCAAGAGAAGACTCGAGCCTTAANGGTTATGGATAAN--GA--TTANAATCTGGTTAGAATATGAAATA-ATTG-CTATCGAAC-TTTGTTT--AAGGGCTTAAATCAGTTTAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACACT-----GT-AGCG-ACAATTTCCATGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT---CACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACT---T--TAACCTTCAATGTTGAAGAAAA--AA-----TCGCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTATAATTTCGTG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCNTTNAGACTNTCGTNTTAAGAGGCG-TTTAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTCAAATTATTTAT-ACATAGTTTTCGGAGTTGTTAGAGATCA---AGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGCTT---AAGGCTTT-------TGCCTATATTTT-C----AATTGAA------A--G--TTTATCAAA-CTGGATCCTAACAATTTCATGAAAAGG----CCTTCTTGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTG--GTAT-----TCTTAC--TGTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TTACA----AA--TG----TATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AA-----GCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTTTCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAA-----TCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TT-------CA-ATAC---CATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTT---T--TG---TTCAGT-TT--AGACAG--AATTATTTCCCTT-AATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----CATCTGTATTCAAGGATAT---------------TCAA-AATAGT---T--TA-CCTTCAATTTTGAA--AAA--TA-----TCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGTTTTGTAGCATTTT-------TGTTTATACTT-------------A-C----A--G--TTTATCAAA-CTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATAC----A--CAACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTC-------------A-TTTT------TTT-T-ATAT-----------TTGT------------ACATTATTTGGGA-T--------------TAGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGT-----GATGTTTTATAGCGTTGTCTATATTTTTC----AATTGAAAC--TCACTG--TTTCCCAAA-CTGGAGCCTAACAATGTCATGAAAGTG----C-TTCTTGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCT--GTATTGG--TTTCAAACTGTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-ATGG-CTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TTATATCATAC-ATT----TATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACT---T--TA--CTTCAATGTTGGAATAAA--AA-----TCGCTTAAATGTACT
gi|3 : AGATCT--GTAT--AGCTTTCACAGTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATTT--ATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATTACA----AATATC----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACT---T--TA-CCTTGAATGTTGAACAAAA--AA-----TCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-TTAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAACCTTTGTT---ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TTATA----AG-ATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACT---T--TA--CTTCAGTGTTGAAAAACA--AA-----GCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GTATT----A---TA----TATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACG---T--TA-CCTTCAATTTTGAAAATAA--GA-----TACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGTA-CTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGAC-ATTGTGTTAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGAT------GTCATT----------G-CTTT----TATTT---------TTTT-ATATTTGT---ACATAA----------TT-------TGGG-------AGTTGTTA-GATAAA--TTTA---AGAT--AGTTTAGTATATAACGATCATTG-----G---T-TCATGTGATGTTTT--AAGGTTTT--------GTCTATATTTTAC----AATTGGA-C--TCA--CATTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATGAAAA------TGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA----------TAAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GAG-TTGT-ATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTGA---CATGTGT-ACATAATCTA-AGAGTTGTCAGAGATAATTTAGATTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAT--A--TTTGACA-TGTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaggaactaagatagtttaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTTA---CAGTTTTAACATAGTTTT-GGAGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTAA---CATTTGT-TCATAGTTTG-GGA--TGTTAGAGATCG---CGACTGCTTAG------GAGT-----AAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGTTTT--ATAGCTTT-------TGTCTATATTTT-CTAAAAAT--AA-CGTTCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATAC---C-TTCTTGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -TGGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
Alignments
lowQualScore : 1 1 2222 333333333333333 222222 111111 3333333 99999999999999999999999999 1111 111 11 444444444444444444 111 22222222 44444444444444444444444444 333333 111 22222 22 11111 1111 111 555555555555 111 1111111 1 1 11 2222 1 1 99999999999999 222222222 111 2222 111111 1111 1 111 222222222222222 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 4 999999999999999 000000 1 6 999999 5 2222222 6 66666666666666666666666666 2222 555 1 77 3 3 888888888888888888 0 666 1 66666666 44444444444444444444444444 8 777777 3 1 44 0 22 888 88888 00 44444 77 2222 888 3333 000 66 1 3 77 0 5 222222222222 0 000 1 6 5 2 6666666 0 8 3 3 9 0 0 2 33 1 3 1 0000 66 0 0 5 6 77777777777777 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 888888888888888 888 3 00 0 66 3 0 222222 22 2 5 33 1 00 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... . ............... ...... . . ...... . ....... . .......................... .... ... . .. . . .................. . ... . ........ .......................... . ...... . . .. . .. ... ..... .. ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . . . . . . .. . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... ............... ... . .. . .. . . ...... .. . . .. . .. . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 8 333333333333333 888888 0 7 000000 7 4444444 4 88888888888888888888888888 6666 555 0 55 2 2 222222222222222222 8 666 0 88888888 22222222222222222222222222 0 555555 2 0 77 7 00 000 44444 88 33333 99 1111 000 4444 000 99 4 0 99 4 7 777777777777 7 000 0 7 2 5 8888888 6 0 2 0 2 2 0 5 88 0 2 0 0000 88 0 0 6 4 66666666666666 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 000000000000000 888 4 44 2 11 3 8 888888 22 9 3 88 0 44 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAGTTT--GGAGTTGTTAGAGATCGAGATTGCTTAG--------ATTTAGTAA-CAGTTA-AAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--TCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCGTTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAGTTTT-GGAGTTGTTAGAGATNAAGATTGCTTAG--------ATTGAGTAAGCAGTTA-GAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--TCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGTCTATCAAAC-CTTGTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGAANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC-AAATTATTTAT-ACATAGTTTTCGGAGTTGTTAGAGATCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGCTT---AAGGCTTT-------TGCCTATATTTT-C----AATTGAA------A--G--TTTATCAAA-CTGGATCCTAACAATTTCATGAAAAGG----CCTTCTTGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTG--GTAT-----TCTTAC--TGTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TTAC-----AA-ATG----TATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TT-------CA-ATAC---CATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----CATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTGAA--AAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGTTTTGTAGCATTTT-------TGTTTATACTT-------------A-C----A--G--TTTATCAAA-CTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTC-------------A-TTT--------TTTTT-ATAT-----------TTGT---------ACATTATTTGGG-------ATT--------AGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGT-----GATGTTTTATAGCGTTGTCTATATTTTTC----AATTGAAAC--TCACTG--TTTCCCAAA-CTGGAGCCTAACAATGTCATGAAAGTG----C-TTCTTGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCT--GTATTGG--TTTCAAACTGTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TTATATCATAC-ATT----TATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCT--GTAT--AGCTTTCACAGTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATT--TATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATTACA----AATATC----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TTATA----AG-ATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GTATT----A---TA----TATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--ATT-TTTTTA---TATTTGT-ACATAATTT--GG--------GAG-------TTG-TTAG--------AT----------------AAAT----TTA---AGAT--AGTTTAGTATATAACGATCATTG-----G---T-TCATGTGATGTTTT--AAGGTTTT--------GTCTATATTTTAC----AATTGGA-C--TCA--CATTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATGAAAA------TGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA----------TAAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG-A---CATGTGT-ACATAATCTA-AGAGTTGTCAGAGATAA------TTTAG--------ATTTAGGAA----CTA--AGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAT--A--TTTGACA-TGTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTT-A---CAGTTTTAACATAGTTTT-GGAGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTA-A---CATTTGT-TCATAGTTTG-GGA--TGTTAGAGATCGCGACTGCTTAG-----------GAGTAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGTTTT--ATAGCTTT-------TGTCTATATTTT-CTAAAAAT--AA-CGTTCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATAC---C-TTCTTGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -TGGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
Alignments
lowQualScore : 1 1 2222 44444444444444 222222 111111 999999999999999999999999999999999999999999999 1111 111 11 444444444444444444 111 22222222 44444444444444444444444444 333333 11 22222 11 11111 1111 111 555555555555 111 1111111 1 1 11 2222 1 1 99999999999999 222222222 111 2222 111111 1111 1 111 222222222 1111111 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 00000000000000 000000 1 6 6 666666 111111111111111111111111111111111111111111111 2222 555 1 77 3 3 888888888888888888 0 666 1 66666666 44444444444444444444444444 8 777777 3 1 44 0 22 4 11 88888 44 6 44444 77 2222 888 3333 000 66 5 3 77 0 5 222222222222 0 000 1 6 5 2 6666666 0 8 3 1 9 0 0 1 33 1 3 1 0000 66 0 0 5 6 77777777777777 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 666666666 3333333 888 3 0 0 0 66 3 0 222222 22 2 2 1 33 1 3 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... .............. ...... . . . ...... ............................................. .... ... . .. . . .................. . ... . ........ .......................... . ...... . . .. . .. . .. ..... .. . ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . . . . . . .. . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... ......... ....... ... . . . . .. . . ...... .. . . . .. . . . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 00000000000000 888888 0 7 7 777777 777777777777777777777777777777777777777777777 6666 555 0 55 2 2 222222222222222222 8 666 0 88888888 22222222222222222222222222 0 555555 2 0 77 7 00 2 00 44444 11 7 33333 99 1111 000 4444 000 99 0 0 99 4 7 777777777777 7 000 0 7 2 5 8888888 6 0 2 0 2 2 0 0 88 0 2 0 0000 88 0 0 6 4 66666666666666 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 777777777 4444444 888 4 2 1 2 11 3 8 888888 22 9 7 0 88 0 4 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATC-AGATTGCTTAG--------ATTTAGNAA-CAGTTA-AAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--TCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCCG--TAT--G--TTTCACA-T-GTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCAT--GCAAA-C-ATTGAGAAT---TTATA----AA-ATA----T-ATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCGAGATTGCTTAG--------ATTTAGTAA-CAGTTA-AAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--TCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCCG--TAT--G--TTTCACA-T-GTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCAT--GCAAA-C-ATTGAGAAT---TTATA----AA-ATA----T-ATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC-AAATTATTTAT-ACATAG-TTTTCGG-AGTTGTTAGAGATCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGCTT---AAGGCTTT-------TGCCTATATTTT-C----AATTGAA------A--G--TTTATCAAA-CTGGATCCTAACAATTTCATGAAAAGG----CCTTCTTGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTGG--TAT-----TCTTAC--T-GTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCAT--GCAAA-C-ATTGAGAAC---TTAC-----AA-ATG----T-ATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TTC-------A-ATA----CCATC---ATATGATGAGATGTT--ACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGTA-------------AAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----C-ATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTG--AAAAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACACT--GCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGTTTTGTAGCATTTT-------TGTTTATACTT-------------A-C----A--G--TTTATCAAA-CTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTCA--------------TTT--------TTTTT-ATAT-------------TTGT---------ACATT--------------ATTTGGGAT-TAGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGT-----GATGTTTTATAGCGTTGTCTATATTTTTC----AATTGAAAC--TCACTG--TTTCCCAAA-CTGGAGCCTAACAATGTCATGAAAGTG----C-TTCTTGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCTG--TATTGG--TTTCAAACT-GTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCAT--GCAGACC-ATTGGAAAT---TTATATCATAC-ATT----T-ATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCTG--TAT--AGCTTTCACAGT-GTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATT--TATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCAT--GCAAA-CCATTGAGAACATATTACA----AATATC----T-ATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCAT--GCAAATC-ATTGAAAAT---TTATA----AG-ATACATCT-ATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCAT--GTAAAAT-ACTGAGAAT---GTATT----A---TA----T-ATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--ATT-TTTTTA---TATTTGT-ACATAA-TTT--GGGAGTTG-----------------TTAG--------AT----------------AAAT----TTA---AGAT--AGTTTAGTATATAACGATCATTG-----G---T-TCATGTGATGTTTT--AAGGTTTT--------GTCTATATTTTAC----AATTGGA-C--TCA--CATTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATGAAAA------TGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACA-TTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAAT--------TGGTTTAT--TGACT-TTGAAACAAATA----T------AAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG-A---CATGTGT-ACATAA-TCTA-AG-AGTTGTCAGAGAT---AAT---TTAG--------ATTTAGGAA-C--T---AAGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatt--TAT--A--TTTGACA-T-GTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTT-A---CAGTTTTAACATAGTTTT--GG-AGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTA-A---CATTTGT-TCATAG-TTT--GG--GATGTTAGAGATCGCGACTGCTTAG--------G---AGTAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGTTTT--ATAGCTTT-------TGTCTATATTTT-CTAAAAAT--AA-CGTTCA--G--TTTACCAAA-CTGGATCCTAACAATTTCATGAAAATAC---C-TTCTTGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -T-GGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
Alignments
lowQualScore : 1 1 2222 333333333333333333333 111111 99999999999999999999999999999999999999999 111111111111111 444444444444444444 111 2222222 4444444444444444444444444 22222222222 111 22222 22 11111 1111 111 555555555555 111 1111111 1 1 11 2222 1 1 99999999999999 222222222 111 2222 111111 1111 1 111 222222222222222 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 999999999999999999999 1 6 6 666666 1 44444444444444444444444444444444444444444 0 999999999999999 0 3 3 888888888888888888 0 666 1 6 6666666 9999999999999999999999999 8 44444444444 3 1 44 0 22 888 88888 00 44444 77 2222 888 3333 000 66 1 3 77 0 5 222222222222 0 000 1 6 5 2 6666666 0 8 3 1 9 0 0 1 33 1 3 1 0000 66 0 0 5 6 77777777777777 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 888888888888888 888 3 00 0 66 3 0 222222 22 2 2 1 33 1 00 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... ..................... . . . ...... . ......................................... . ............... . . . .................. . ... . . ....... ......................... . ........... . . .. . .. ... ..... .. ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . . . . . . .. . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... ............... ... . .. . .. . . ...... .. . . . .. . .. . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 555555555555555555555 0 7 7 777777 7 22222222222222222222222222222222222222222 8 888888888888888 2 2 2 222222222222222222 8 666 0 8 0000000 2222222222222222222222222 0 88888888888 2 0 77 7 00 000 44444 88 33333 99 1111 000 4444 000 99 4 0 99 4 7 777777777777 7 000 0 7 2 5 8888888 6 0 2 0 2 2 0 0 88 0 2 0 0000 88 0 0 6 4 66666666666666 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 000000000000000 888 4 44 2 11 3 8 888888 22 9 7 0 88 0 44 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGCTTT-------TGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAAATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGTTTT--AANGTTTT-------TGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC-AAATTATTTAT-ACATAG-TTTTCGG-AGTTGTTAGAGATCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGCTT---AAGGCTTT-------TGCCTATATTTT-C----AATTGAA--------A--GTTTATC-AAACTGGATCCTAACAATTTCATGAAAAGG-CCTTCT----TGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTG--GTAT-----TCTTAC--TGTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TTAC-----AA-ATG----TATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TT-------CA-ATAC---CATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----CATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTG--AAAAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGTTTTGTAGCATTTT-------TGTTTATACTT-------------A-C------A--GTTTATC-AAACTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTCATT----T------------------TTTTT-ATAT-------------TTGT--------A-CATT--------------ATTTGGGAT-TAGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGT-----GATGTTTTATAGCGTTGTCTATATTTTTC----AATTGAAAC--T--CACTGTTTCCC-AAACTGGAGCCTAACAATGTCATGAAAGTG-C-TTCT----TGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCT--GTATTGG--TTTCAAACTGTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TTATATCATAC-ATT----TATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCT--GTAT--AGCTTTCACAGTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATT--TATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATTACA----AATATC----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TTATA----AG-ATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GTATT----A---TA----TATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--ATT-TTTTTA---TATTTGT-ACATAA-TTT--GGGAGTTGTTAGA-------------TAA--------ATTT-------------AAGATA--G--------------TTTAGTATATAACGATCATTG-----G---T-TCATGTGATGTTTT--AAGG-TTT-------TGTCTATATTTTAC----AATTGGA-C--TCACA--TTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATG-------AAAATGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA----------TAAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG-A---CATGTGT-ACATAA-TCTA-AG-AGTTGTCAGAGAT---AAT---TTAG--------ATTTAGGAA-C--T---AAGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAT--A--TTTGACA-TGTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTT-A---CAGTTTTAACATAGTTTT--GG-AGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTA-A---CATTTGT-TCATAG-TTT--GG--GATGTTAGAGATCGCGACTGCTTAG--------G---AGTAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGTTTT--ATAGCTTT-------TGTCTATATTTT-CTAAAAAT--AA-CGTT--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATACC-TTCT----TGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -TGGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
Alignments
lowQualScore : 1 1 2222 333333333333333333333 111111 99999999999999999999999999999999999999999 222222222222222 444444444444444444 22222 11 4444444444444444444444444 22222222222 111 22222 22 11111 1111 111 555555555555 111 1111111 1 1 11 2222 1 1 99999999999999 222222222 111 2222 111111 1111 1 111 222222222222222 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 999999999999999999999 1 6 6 666666 1 44444444444444444444444444444444444444444 0 444444444444444 3 3 888888888888888888 00000 0 77 11 0 9999999999999999999999999 8 44444444444 3 1 44 0 22 888 88888 00 44444 77 2222 888 3333 000 66 1 3 77 0 5 222222222222 0 000 1 6 5 2 6666666 0 8 3 1 9 0 0 1 33 1 3 1 0000 66 0 0 5 6 77777777777777 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 888888888888888 888 3 00 0 66 3 0 222222 22 2 2 1 33 1 00 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... ..................... . . . ...... . ......................................... . ............... . . .................. ..... . .. .. . ......................... . ........... . . .. . .. ... ..... .. ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . . . . . . .. . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... ............... ... . .. . .. . . ...... .. . . . .. . .. . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 555555555555555555555 0 7 7 777777 7 22222222222222222222222222222222222222222 8 888888888888888 2 2 222222222222222222 00000 8 66 00 8 2222222222222222222222222 0 88888888888 2 0 77 7 00 000 44444 88 33333 99 1111 000 4444 000 99 4 0 99 4 7 777777777777 7 000 0 7 2 5 8888888 6 0 2 0 2 2 0 0 88 0 2 0 0000 88 0 0 6 4 66666666666666 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 000000000000000 888 4 44 2 11 3 8 888888 22 9 7 0 88 0 44 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGT-----TTTATAGC--TTTTGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGT-----TTTAANGC--TTTTGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC-AAATTATTTAT-ACATAG-TTTTCGG-AGTTGTTAGAGATCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGC-----TT-AAGGC--TTTTGCCTATATTTT-C----AATTGAA--------A--GTTTATC-AAACTGGATCCTAACAATTTCATGAAAAGG-CCTTCT----TGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTG--GTAT-----TCTTAC--TGTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TTAC-----AA-ATG----TATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TT-------CA-ATAC---CATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----CATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTG--AAAAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGT-----TTTGTAGCATTTTTGTTTATACTT-------------A-C------A--GTTTATC-AAACTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTCATT----T------------------TTTTT-ATAT-------------TTGT--------A-CATT--------------ATTTGGGAT-TAGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGTGATGTTTTATAGC--GTT-GTCTATATTTTTC----AATTGAAAC--T--CACTGTTTCCC-AAACTGGAGCCTAACAATGTCATGAAAGTG-C-TTCT----TGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCT--GTATTGG--TTTCAAACTGTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TTATATCATAC-ATT----TATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCT--GTAT--AGCTTTCACAGTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATT--TATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATTACA----AATATC----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TTATA----AG-ATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GTATT----A---TA----TATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--ATT-TTTTTA---TATTTGT-ACATAA-TTT--GGGAGTTGTTAGA-------------TAA--------ATTT-------------AAGATA----------------GTTTAGTATATAACGATCATTG-----G---T-TCATGTGATGT-----TTTAAGG---TTTTGTCTATATTTTAC----AATTGGA-C--TCACA--TTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATG-------AAAATGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA----------TAAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG-A---CATGTGT-ACATAA-TCTA-AG-AGTTGTCAGAGAT---AAT---TTAG--------ATTTAGGAA-C--T---AAGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAT--A--TTTGACA-TGTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTT-A---CAGTTTTAACATAGTTTT--GG-AGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTA-A---CATTTGT-TCATAG-TTT--GG--GATGTTAGAGATCGCGACTGCTTAG--------G---AGTAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGT-----TTTATAGC--TTTTGTCTATATTTT-CTAAAAAT--AA-CGTT--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATACC-TTCT----TGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -TGGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
Alignments
lowQualScore : 1 1 2222 333333333333333333333 111111 99999999999999999999999999999999999999999 222222222222222 444444444444444444 22222 1 11 4444444444444444444444444 22222222222 111 22222 22 11111 1111 111 555555555555 111 1111111 1 1 11 2222 1 1 99999999999999 222222222 111 2222 111111 1111 1 111 222222222222222 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 999999999999999999999 1 6 6 666666 1 44444444444444444444444444444444444444444 0 444444444444444 3 3 888888888888888888 00000 0 11 0 9999999999999999999999999 8 44444444444 3 1 44 0 22 888 88888 00 44444 77 2222 888 3333 000 66 1 3 77 0 5 222222222222 0 000 1 6 5 2 6666666 0 8 3 1 9 0 0 1 33 1 3 1 0000 66 0 0 5 6 77777777777777 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 888888888888888 888 3 00 0 66 3 0 222222 22 2 2 1 33 1 00 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... ..................... . . . ...... . ......................................... . ............... . . .................. ..... . .. . ......................... . ........... . . .. . .. ... ..... .. ..... .. .... ... .... ... .. . . .. . . ............ . ... . . . . ....... . . . . . . . . .. . . . .... .. . . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... ............... ... . .. . .. . . ...... .. . . . .. . .. . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 555555555555555555555 0 7 7 777777 7 22222222222222222222222222222222222222222 8 888888888888888 2 2 222222222222222222 00000 6 00 8 2222222222222222222222222 0 88888888888 2 0 77 7 00 000 44444 88 33333 99 1111 000 4444 000 99 4 0 99 4 7 777777777777 7 000 0 7 2 5 8888888 6 0 2 0 2 2 0 0 88 0 2 0 0000 88 0 0 6 4 66666666666666 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 000000000000000 888 4 44 2 11 3 8 888888 22 9 7 0 88 0 44 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGT-----TTTATAGC--TTTTGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGT-----TTTATAGC--TTTTGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC-AAATTATTTAT-ACATAG-TTTTCGG-AGTTGTTAGAGATCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTATAAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----A---T-T------ATGC-----TTAA-GGC--TTTTGCCTATATTTT-C----AATTGAA--------A--GTTTATC-AAACTGGATCCTAACAATTTCATGAAAAGG-CCTTCT----TGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTG--GTAT-----TCTTAC--TGTCTG-----TC--GGAG----CAGATGTA--TGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATA----TCAGACTGAGTA---TATTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TTAC-----AA-ATG----TATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TT-------CA-ATAC---CATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TTATA----AC-ATA----CATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTG--AAAAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : G-----TC--GGAG----TAGCTGTG--TGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATA----TC------AGTA---TATTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCG-----GGCATAT------ACGT-----TTTGTAGCATTTTTGTTTATACTT-------------A-C------A--GTTTATC-AAACTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTCATT----T------------------TTTTT-ATAT-------------TTGT--------A-CATT--------------ATTTGGGAT-TAGTTA-GAGA-A--GTT---TAGAT--AGTT-AG-ATACAATTGTCATTG-----A---T-T------ATGTGATGTTTTATAGC--GTT-GTCTATATTTTTC----AATTGAAAC--T--CACTGTTTCCC-AAACTGGAGCCTAACAATGTCATGAAAGTG-C-TTCT----TGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCT--GTATTGG--TTTCAAACTGTCTA-----CC--AGGG----CAGATAT-----------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATA----GCACTATAGTTC---TATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TTATATCATAC-ATT----TATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCT--GTAT--AGCTTTCACAGTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTA----TC------ACTA---TATATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATT--TATA---T-----GC-A-------------------CTCTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATTACA----AATATC----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAGTA----TAATTT---TATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TTATA----AG-ATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATA----T------GAGTAACTTAAATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : TCTATATGCCCTAAAG-GTGAGCGGAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GTATT----A---TA----TATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--ATT-TTTTTA---TATTTGT-ACATAA-TTT--GGGAGTTGTTAGA-------------TAA--------ATTT-------------AAGATA----------------GTTTAGTATATAACGATCATTG-----G---T-TCATGTGATGT-----TTTA-AGG--TTTTGTCTATATTTTAC----AATTGGA-C--TCACA--TTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATG-------AAAATGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTG-----TC--GGAA----TAGATATA--TTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAA--------TTGGTTTAT--TGACT-TTGAAACAAATA----------TAAGTA---TATATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG-A---CATGTGT-ACATAA-TCTA-AG-AGTTGTCAGAGAT---AAT---TTAG--------ATTTAGGAA-C--T---AAGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTAT--A--TTTGACA-TGTGTACATAATCTAAGAGTTGTCAGAGATAATTTAGATTTAGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcattTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTCTTT----TT------TTTT-A---CAGTTTTAACATAGTTTT--GG-AGTTGTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT--------ATA-TTTA-A---CATTTGT-TCATAG-TTT--GG--GATGTTAGAGATCGCGACTGCTTAG--------G---AGTAAGCAGTTA-AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGCCATG---T-G------ATGT-----TTTATAGC--TTTTGTCTATATTTT-CTAAAAAT--AA-CGTT--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATACC-TTCT----TGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : -TGGCTG-----TC--GCAG----CAGATATA--TAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca
blockSeqs : T C AT CATT TTATTTTTTTA T A T GGGA T GATCGCGACTGCTTAGGAGTAAGCAGTTA GTTATATACATGC T T GTTCATGTG GATGT T AT TTCAATTGAAACTCACT A CCTTCT A A TT AT CAA TGG AC CATAA TA TTGT AAT GGGT TTT . A T . G GCACTATA ACT T C A G CTTGA A T T G A A G . T T A AATG GG G T T A AAAGGTGAGCGGA A GT T TA T T A GACTTAGAA GAT TGC G GCTC ATGGCA GAT A ACTT TT C C ATA ATCATACATT TGT T GA T . CC A G C TC A A G C C T G TG AC ATT T C C C C GT AGGCG C G AT A . AA TG T C . TAA .
blockSeqs : . . TG . TTATATTTGA G . . AAGA C GATAATTTAGATTTAGGAACT GTTTAGAT T T GCCATGTG . T . TCTAAAAATAACGTTCA . CTTCT A G CC GA T AGC AG . . . G TGGT . . A G . . ACAGTATA . A G C T CTACA A . T G A . G . G T T G AA . . T A GCA A GT T AA A T A GATTTATAC CAT . G GCTC . G A . . T . . AAGATACATC . C . T . CC T G C TT C A A A C . . A . CAT C A . A G T GA
blockSeqs : . . TT . ATATTTAA G . . GGA T ACATTATTTGGGATTAGTTA . . . GGCATAT . T . TACAATTGGACTCACA . AAAA . C T G AT . . . A TAGA . . A T . . TC . A C T G GGA A . . T . . T . G . T . . . . T C . T AT A TA T A A AACT GAT . T . . T A . . A . . AAATATC . A . . . CC G A A . G A A G C . . A . CAA T A
blockSeqs : TTTTTTA T . . GG T TAAATTT ATT . . . ACA . A A . . . A AAGG . . A G . . TC . A G C G GGA . . . . . . . . . . . T . T . G . . G T . . . . . CAATAC . C . . . CC G G T . G A G T G . . A . ATT T A
blockSeqs : T G . . . . . . . A GGT . . . T . . TG . T . . . . . . . . G G . . . . . AACATA . C . . . CC G A A . C . G C T . . A . TTT T T
blockSeqs : . . . . . . . . . . . TA . A . T . . . . . TATA . C . . . C G A C . A . A G T . . A . AAT G .
blockSeqs : . . . . . . C T A A . C . . T . . . . TT .
blockSeqs : . . . . . . A . . . .
blockSeqCons : TTATTTTTA************ GGA*** GACTACTTAGGTAGTTA************************ GCATGT************ TAATAACCACA************** G**** AN ** ** TN********** GA************ AAACATN******** ******
originalCons : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--ATA-TTTN-A---CATTTGT-ACATAG-TTT--GG-AGTTGTTAGAGATCA-GATTGCTTAG--------ATTTAGNAA-CAGTTA-AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTG-----G---T-T------ATGT-----TTTATAGC--TTTTGTCTATATTTT-C----AATTGAA-C--T--CA--GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTAT--G--TTTCACA-TGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATA----TC----TAAGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT-----GT-AGCGGACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATA----AA-ATA----TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
finalCons : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATTTTATTTTTA------------CATTTGT-ACATAG-TTTGGA---GTTGTTAGAGACTACTTAGGTAGTTA------------------------AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTGGCATGT------------ATGT-----TTTATAGC--TTTTGTCTATATTTTAATAACCACA--------------GTTTACC-AAACTGGATCCTAACAATTTCATGAAAATG-C-TTCT----TGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCC--GTATG----TTTCACANTGTCTG-----TC--GGAG----CAGATATA--TGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATATN----------AGTA---TATATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCTGA------------CAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TTATAAACATN--------TATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 1 1 2222 222222222222 1111111 11 77777777777777777777777777777777777777777777777777 11 333333333 3333333333 1 11 00000000000000000000 333333 11 22222 111 111111 111 333333 1111111 1 1 11 2222 1 1 66666666666666 222222222 111 2222 111111 1111 1 111 33333333 1 111111 11 111 1111111 1 5555555555555 1 2222 1
lowQualScore : 5 0 22 1111 3 777777777777 7777777 6 6 55 88 6 77777777777777777777777777777777777777777777777777 0 11 66 111111111 3 6666666666 0 11 0 22222222222222222222 8 777777 3 1 44 0 22 4 33 77777 2 2 1 1 5 3 1 3 5 000 66 5 3 77 0 5 1 666666 000 222222 1 6 5 2 6666666 0 8 3 1 9 0 0 1 33 1 3 1 0000 66 0 0 0 66666666666666 0 3 33 1 77 1 1 1 000000000 0 222 111 2 8888 666666 888 0 3 0 2222 77 7 6 000 77 88888888 1 888 3 00 0 66 3 0 222222 22 2 2 1 33 1 00 1 1 5 1 0 4 4 55 66 222 2 1 6 1 1 777 8888888 5 1 22 1 0000000000000 22 22 1 1 5 4444 5
lowQualScore : . . .. .... . ............ ....... . . .. .. . .................................................. . .. .. ......... . .......... . .. . .................... . ...... . . .. . .. . .. ..... . . . . . . . . . ... .. . . .. . . . ...... ... ...... . . . . ....... . . . . . . . . .. . . . .... .. . . . .............. . . .. . .. . . . ......... . ... ... . .... ...... ... . . . .... .. . . ... .. ........ . ... . .. . .. . . ...... .. . . . .. . .. . . . . . . . .. .. ... . . . . . ... ....... . . .. . ............. .. .. . . . .... .
lowQualScore : 5 0 00 2222 2 888888888888 5555555 7 7 88 33 7 44444444444444444444444444444444444444444444444444 8 00 22 222222222 0 6666666666 6 00 8 00000000000000000000 0 555555 2 0 77 7 00 2 88 88888 5 5 0 7 7 9 7 0 1 000 99 0 0 99 4 7 0 444444 000 999999 0 7 2 5 8888888 6 0 2 0 2 2 0 0 88 0 2 0 0000 88 0 0 8 44444444444444 6 8 88 0 00 0 0 0 444444444 8 444 777 5 3333 444444 666 7 9 1 1111 99 1 7 000 99 66666666 0 888 4 44 2 11 3 8 888888 22 9 7 0 88 0 44 4 1 9 1 8 4 4 22 11 111 0 6 7 0 0 777 0000000 0 0 00 0 5555555555555 00 00 0 0 0 5555 0
consensus : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--AT--TTTT--A---CATTTGT-ACATAG-TTT--GG-AGTT-GTTAGAGA------T-A------CTTAG------GA-T--------CAGTTA------AAGATA--GTTATATACATGCAGTTTAGTATATAACTGTCATTGG--C-ATGTGATGTTTTATAGC--TTTTGTCTATATTTTC----A--ATTG-AACTCACAGTTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCCG--TAT--G--TTTCACACTGTCTGTCGGAGCAGATA-TATGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATATCAG------TA---TA------TATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACACT------------GACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TT--ATA--A---ACATNTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
Reference ( family-2144 ) : NNNTGAAAATTCTATATTTTGA-GAACNNGACTATT----TTAATTTGAATCGATGACATCATTATTTCATTTTGTGATGTCATTGTCATT----TT--AT--TTTT--A---CATTTGT-ACATAG-TTT--GG-AGTT-GTTAGAGA------CTA------CTTAG------G-----------TAGTTA------AAGATA--GTTATATANATGCAGTTTAGTATATAACTGTCATTGG--C-ATGT-ATGTTTTATAGC--TTTTGTCTATATTTT-----A--AT---AAC-CACAGTTTACCAAA-CTGGATCCTAACAATTTCATGAAAATG----C-TTCTTGCACAATCNTTTGTGAAAATATAAAGTTATAATCATNCGGTAAAATTTGCCTCAATCCCAACTGCGCCAAACGAANNAGATCCG--TAT--G--TTTCACANTGTCTGTCGGAGCAGATA-TATGGGTTTTAGGGGCTAAG---ATAGTTT--AAGCCTTATCTTATTTTATAAATATGACTNTTGGTTCAT--TGACT-TGGAAACAAATATNAG------TA---TA------TATAGGATTCCTCTGCNAGAGAAGACTCGAGCCTTAAGGGTTATGGATAAC--GA--TTAGAATCTGGTTAGAATATGAAATA-ATTGNCTATCAAAC-CTTNTTT--AANGGCTTAAATCAGTTNAAATTCTGGA---GAAAGGAA-AA-ATGATACCAATTTATATACGCT------------GACAATTTCCNTGTTTCCCCTTCGTTTAATCTCCAGCTGACTTATAAAATATNATTTCTTACTATGAAATTGTCATCTGTCTGC---ATGTCT----ACCCA------TTTGTTTG--TGCTTTCACAATTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-C-ATTGAGAAT---TT--ATA--A---ACATNTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------ACCTTCAATGTTGGANAAAA--AATCNCTTAAATGTACTGAAATGGGCGAAAGANGATGTTTACAATTTCATG-TCTG-TC-ACAACT--TTGTAACCACTTCACATAACNTTGTGAAATTTTCAGAGCTTCTTTCAGACCNTTNT-T-TAAGAGGCG-TTTAGCTTCTCCATTNATTNNCNACATGACGTTTTCATTTATATGNNAGNNCCANGTTCGNCTGGCTCAGTCATTCTAATGCATCTTTATG
gi|1 : TGAAAATTCTATGTTTTAA-GAACAGGACTAAT----TTAATTTGAATCAATGACATCATTATTTCATTTTGTGATTTTGTTGTCATTGGACTTGGATAATTTC--AAATTATTTAT-ACATAG-TTTTCGG-AGTT-GTTAGAGA------TCAAGATTGCTTAGTAATATGAATTTATTAATCAGTTAT-----AAAATATGATTATATATATGCAGTTTCGTATATAACTGTCACTG-----AT-T-ATGCTTAA-GGC--TTTTGCCTATATTTTC----A--ATTG-AA-----AGTTTATCAAA-CTGGATCCTAACAATTTCATGAAAAGG----CCTTCTTGCACAACCCTTTGTGAAAATATAAACTTATAATCATAAGGTAAAATTTACCTCAATTCCAACGGCGCCAATTGAATGAGATTGG--TAT--T--CTT---ACTGTCTGTCGGAGCAGATG-TATGGGTTTTAGGGGCTAAG---ATATTTTTCAAGCCCTATCTTATATTATATATATGACTGTTGGTTCATAATAACT-TGGAAACAAATATCAGACTGAGTA---TA------TTTATGATTCCTCTGCTACAGAACACTCGAGCCTTAATTGCTATGGATAAT--GA--TTATAATTTGGTTAGAATATGAA-TA-ATTGTCTCTTAAAC-CTTTTTTCTAATGGCTTAAATCAGTTAAAATTCTGGA---GAAAGGGA-AA-ATGATACCAACTGATATCCGCTTTTTAGTCAGCGGACAATTTCCTTTGTTCCTCTTCGTTTTATCTCCCGCTCACGTATAAAGTATCAGTTCTTACTATGAAGTGATCATATGTCTGC---ATGTAT----ATTCA------TTTATTTC--GGCTTTCACAATTTATTGTCTAGTCTGTA----TATAACCATTTTACATTACCA--TGCAAA-C-ATTGAGAAC---TT--ACA--A-----ATGTATC---TTTTAAGGATATATTTTACACAAAT--TCCATAATACTGTATAATAACGTTTAATGTTGGGGAAAA--AAGCTCTTAAATGTATTGAAATTTGCAAAAGAGGGTTTTTATAATTCCATG-TCTG-TC-ATAACC--TTGCAACCACTTCACATAACTTTGTGAAATTTTCAGAGCTTCTTTCAGACCTTTTT-TCTAAAAGGCGTTTTAG-TTCTTCATTTATTTGCCACATAATGTTTTCATTTATATGCCAGACCCAGGTTCGACTGGCTCAGTCATTCT--TGCATCTTTATG
gi|10 : ttaCAAGT--TCCATAATGCT--------ACCTTCAGCAT-GGACAAAATCAATCAGTTGATTGGCTTGGA--GGGAGAGGGACGATATTCACAATTGTGTG-TCTG-T----AGGT--TTGTAACTACTTAACATAGCATTATGAAACTTTCAGCACTTtcaacccaacgtttgggcaatttgtccggaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaatttagaatatcatattacagttattca
gi|10 : GCAAAGGAATATGTTCACAACT--GTG-TCTGGTCTGCAAAT--GTGTTACCATTCCACATTATCATGTGAAACTCTTAGgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggacttgcaaaggaatatgttcacaactgtgtctggtctgcaaatgtgttaccattccacattatcatgtgaaactcttagc
gi|11 : caagttccataatgctaccttcagcatggacaaaatcaatcagttgattggcttggagggagagggacgatattcacaattgtgtgtctgtaggtttgtaactacttaacatagcattatgaaactttcagcacttgaagaccgttaataaaacatatgaggtgctaaagtataatatataaacagaattatgcctcctggtggactt------TCTGTTTGATTGTT-----AATTTTGTGTCCAGTCTGTAACTTTGTAACCAGTCCAAATAACCATTTG-AAA-C-TTTCAGAAT---TTCAATA----------CCATC---ATATGATGAGATG--TTACACCAAGGATCAATAATGTTTT------G--TTCAGT-TTAGACAGAATTATTTCCCTTAATGT-------------AAAGAGAATATTCACAATTTAATGTTCAG-TC--CAATTACTTATAACCATTTCACACAACCAAACAAAACATTCAGAACTc
gi|12 : gTTGAGAAT---TT--ATA--A----CATACATCTGTATTCAAGGATAT---------------TCAA-AATAGTTT------ACCTTCAATTTTG--AAAAA--TATCGCTTAATTGTACTGAAATGGGCAAAAGA-GATGTATAGAAGTTCATG-TCTG-TC-ATAACG--TTTTAA
gi|13 : GTCGGAGTAGCTG-TGTGG-TTTTAGAGGCTAAG---CTAGTTA--AAGTCTTATCTTATTTTATAGATATGACTTTTGGTCCAT--TTATT-TTGAAACAAATATCAG------TA---TA------TTTAAAATTCCCCTACTGAAGAAGACtttaaccctctgtaaacaagtggttata
gi|14 : caTGTCATCTGTCTGCTGCATGTCT----ACCCG------TTTGTTTG--TATTTTCACAATT-AGTGTCCAGTCTGTA----TATAACCATTTCACATTACAC--TGCAAA-agaa
gi|15 : TAACTGTCACCGGG-C-ATAT-ACGTTTTGTAGCATTTTTGTTTATACTT-------------------ACAGTTTATCAAA-CTGGAT
gi|16 : TC---ATT--ATGAGATGTTTTGCACAAAT--TCCA-AATACACA------ACCTTCAATGTTGAATAAA
gi|17 : AATTTTATC-TCTG-TC-ACAACT--ATGTAGACACTTCACATGACTT--TGAAATTTTCAGAGCcat
gi|2 : GATGACATCATAATTCCATTTTGTGATGTCATTGTCATT----TT------TTTT--A---TATTTGT-ACATTA-TTT--GG-GATTAGTTAGAGA---------------------------------------AGTTT------A-GATA--GTTAGATACA----------------ATTGTCATTGA--TTATGTGATGTTTTATAGC--GTT-GTCTATATTTTTC---A--ATTGAAACTCACTGTTTCCCAAA-CTGGAGCCTAACAATGTCATGAAAGTG----C-TTCTTGAAAAATCATTTGTGAAAATATAAAGTTATAATCATTTGGTAAAATTTGCCTCAATCCCAATTGCACCAAACAAAATAGATCTG--TATTGG--TTTCAAACTGTCTACCAGGGCAGATA-T---------------------------TT--AAGCCGGATCTTATTTTATAAATACGACTGTTGGTTCAT--TAACT-TGGAAATAAATAGCAC------TA---TAGTTCTATATGGGATTTCTCTGCAAGAGAAGACT-GAAACTTAAGGTTTATGGATAACTTGA--TAAAAATCTGATTAGAATATGAAATA-A-TGGCTATCAAACATTTGTTT--AATGGCTTTAATCAGTTAAAATTCTGGA----AAAGGAAGAA-ATTATACTAATGTATATACACT--------------CAATTTCCATGTTTCACCTTCATTTAATCTCCAACT---------AAT-TGATTTTTTACTATGAAATTGTCATTTATTTGC---ATGTCTGCTCACCCA------TTTGTTAT--TGCTTTGACAATATAGTGTCCAGCCTGTA----GATAACCGTCTCACATTACCA--TGCAGACC-ATTGGAAAT---TT--ATATCAT--ACATTTATC---ATTAAAGGATATGTTTTGCACAAAT--TTCA-AATACTTT------A-CTTCAATGTTGGAATAAA--AATCGCTTAAATGTACT
gi|3 : AGATCTG--TAT--AGCTTTCACAGTGTCTGTCGGAGCAGATA-TATGGGTTTTAGGGGTTATG---ATAGTTT--AATCCTTATCTTATTTTATAAAT--GACTTTTGGTTCAT---GACTGTGAACACAAGTATCAC------TA---TA------TATAGGATTCCTCTGAAAGAGAAGACTCGAG--------GTT----------------TAGAATCTGATTAGAATATGAA-TA-ATTGGCT--------CTTGTTT--AAGAGCT-AAATCAGTTTAAATTCTGGA---GGAA--AA-AATATGATACCAATTTATATGCACT------------------------------CTTTAGTT--------AGCTGACTTAGAAAGTATCATTTCTTACTATGAAATTGTCATCTGTCTGC---AATTCT----ACCCA------TTTGTTTG--TGCTTTCACA-TTTAGTGTCCAGTCTGTA----TATAACCATCTCACATTACCA--TGCAAA-CCATTGAGAACATATT--ACA--A---ATATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AAAACTTT------ACCTTGAATGTTGAACAAAA--AATCCCTTAAATGCACTAAAATGGGCGGAAGATAATATTTATAATTTCATA-TCTG-TC-ACAACT--TTGTAACCACTTCACACAACATTGTTAAATT--------TTCTTTAAGACTCTCCT-T-TAA-AGGCG-TT
gi|4 : TTT--AAGCCTGATCTTATTTTATAAATATGACTGTTGGTTCAT--TGACT-TGGAAACAAATAACAG------TA---TAATTTTATATATGATTTCTCTGCAAGAGACGACTGAAACCTTAATGATTATTAATAAC--TACATAAGAATCTGGCTAGAATATGAAATTTATTGTCTATCAAAC-CTTTGTT--ACGGGCTTAAATCAGTTTAAATTCTGGAAATGAAAAAAA-AA-ATGATTCCAATTTATATACACT--------------CAGTTTCCATGTTTCCCCTTCATTAAAACTCCAGCTAACT-----AATATT-----TTACTATGAAATTGTCATTTGTCTGC---ATGTCTGCTCACCCA------TTTGTTAG--TGCTTTGACATTACAGGGTCCAGCCTGTA----TATA-CCATCTCACATTACCA--TGCAAATC-ATTGAAAAT---TT--ATA--AGATACATCTATC---ATTCAAGGATATGTTTTGCACAAAT--TCCA-AATACTTT------AC-TTCAGTGTTGAAAAACA--AAGCACTTAAATGTACTGAAATGGGCGAAAGACAATGTTTATAATTTCATG-TCTA-TC-ACAACT--TTGTAACCACTTTGAATAATTTTGTGAAATTTTCAAAGCTTatgtcttaaaacaattttttcagtt
gi|5 : CAT--TAACA-AGGAAACAAATATGAG------TAACTTA------AATAGAATGCCTCTGCTAGAGAAGTCTCGAGTCTTAAGGGCTATGGATACG--GA--TTAGA
gi|5 : GCG------------GAAAATGTCTTTATTACCACTTCGTTTAATCATCTGCTGATTTATACAAAATGATTTCTTACTATGAAATTGTCACCTTTCTGC---AT--CT----ACCCAATGGCATTTGTATT--TGCGTTCACAGTTTAGTGTC-ATACTGTA----TATAATCATTTCACATTACCA--TGTAAAAT-ACTGAGAAT---GT--AT--------TATATATC---ATTCAAGGTTATATTTTTTACAATT--TCCA-AATACGTT------ACCTTCAATTTTGAAAATAA--GATACCTTAAATGTAATGAAATGGGTAAAACAGGATGTTTGTAATTTCATT-TCCG-TC-ATAACT--TTGT-ACTACTTCACATAACAATGTGAACTTGTCACTGCTTCGTTCAGA-CATTGTGT-TAAGA-------TAGCTTCTCCATTGATTATCAACATGAC-------------TGAAAGTGCCATGTTCGCCTGGCTCAGT-ATT-TAATACAT-TTTATGcacgtgtctatatgccctaaaggtgagcggaaaatgtctttattaccacttcgtttaatcatctgctgatttatacaaaatgatttcttactatgaaattgtcacctttctgcatctacccaatggcatttgtatttgcgttcacagtttagtgtcatactgtatataatcatttcacattaccatgtaaaatactgagaatgtattatatatcattcaaggttatattttttacaatttccaaatacgttaccttcaattttgaaaataagataccttaaatgtaatgaaatgggtaaaacaggatgtttgtaatttcatttccgtcataactttgtactacttcacataacaatgtgaacttgtcactgcttcgttcagacattgtgttaagatagcttctccattgattatcaacatgactgaaagtgccatgttcgcctggctcagtatttaatacattttatg
gi|6 : cattaacaaggaaacaaatatgagtaacttaaatagaatgcctctgctagagaagtctcgagtcttaagggctatggatacggattagacacgtgtctatatgccctaaaggtgaTGAAAATTCTGTATTT-GACGAACATGACTGTT----CTAATTTGAATTGATGACATCATCATTTCATTTTCTGATGTCATTGC--TT----TT--AT--TTTTTTA---TATTTGT-ACATAA-TTT--GGGAGTT-GTTAGA-------------------TA--------------------AATTT------AAGATA--GTT--------------TAGTATATAACGATCATTGGTTC-ATGTGATGTTTTA-AGG--TTTTGTCTATATTTT-----ACAATTG-GACTCACATTTTACCAAAACTGGATTCTAACAAGTTCATGAAAATGAAAA------TGC-CAATCGTTTGTGAAAATATAAAGTTATAATCATCCGGTAAAGTTTGTCTTAATCTCAACTGAGCCAAATGAAGAAGAACCAAATAT--G--TTTCACATTGTCTGTCGGAATAGATA-TATTGGTGTAAGGGACTAAGTTTATAGCTT--AAGCCTTGTCTTGTTTTATAAAT--------TGGTTTAT--TGACT-TTGAAACAAATATAAG------TA---TA------TATAGGATTCCCCTGCAAGAGAAGACTGAAGCCTTAAGGGTTATGAAAAAG--GA--GTTGTATCTGGTTATAATAT---ATA-A
gi|7 : attTGAAAATTTTATATTT-GA-GAACTGGATTATTCATTTTAATTTGAATTGATGACATCATTATTTTATTTTGTGATGGCATTGTCA-T----TT--ATA-TTTG--A---CATGTGT-ACATAA-TCTA-AG-AGTT-GTCAGAGA------TAA------TTTAG------A-----------T--TTAGGAACTAAGATA--GTTgtttt
gi|7 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattTGTCAGAG---ATAATTTAGATTT-AGGAACTAAG---ATAGTTT--AAACCTTATCTTATTTTATAtaaaccttatcttattttatag
gi|8 : ctatatgtcgagggctcggcgcaaacctattttgactttgattttttttcagcaaatgtttgtgtgtgtttttcattttttggttgcaattctttaaatacactattcaatctttgaatgagaattttctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatttgaaaattttatatttgagaactggattattcattttaatttgaattgatgacatcattattttattttgtgatggcattgtcatttatatttgacatgtgtacataatctaagagtTAAATATTTTATATTTTAA-GAACTTGACTATT----TTGATTTGAACCGATGACATCATTATTTCATTTTATTATGTCTTTGTC-TT----TT---T--TTTT--A---CAGTTTTAACATAGTTTT--GG-AGTT-GTTAg
gi|9 : tatcgagggttcggcgcacgactactctaacttgattttgttaaaatgttttgataatctcttattacaattctttaaatatacaatctgtaaagtattatagttgtattcaaaatattttagttattcaaatatttagaaaatattctatctttggatgatatttttttctaactcgagttagaatagtattataatttttaagctaataggtatttgctttaatgccaaactactctaactcaaattagaatagtttagcacattaatttcattATTTTATGATGTCATTGTCATT----AT--AT--TTA---A---CATTTGT-TCATAG-TTT--GG--GAT-GTTAGAGATCGCGACTG------CTTAG------GAGTAAG-----CAGTTA------AAAATA--GTTATATACATGCAATTTAGTATATAACTGTCATTGGC-C-ATGTGATGTTTTATAGC--TTTTGTCTATATTTTCTAAAA--AT---AACGTTCAGTTTACCAAA-CTGGATCCTAACAATTTCATGAAAATAC---C-TTCTTGCACAATACTTTGTGAAAATATAAAGTAACAA
gi|9 : ACTGGCTGTCGCAGCAGATA-TATAAGGTTTAGAGGATAAG---ATAGTTC--AAGCCTTACC--A---TATAGATATGATTTTTGGTTCAgactggctgtcgcagcagatatataaggtttagaggataagatagttcaagccttaccatatagatatgatttttggttca