lowQualScore : 222222222222222222222222 111111111111111111111
lowQualScore : 1 444444444444444444444444 1 33 1 1 2 1 444444444444444 8888888888888888888888 111111 111 1111 1 99999999999999999999999999999999999999999999999 22222222 11111 777777777777777777777777777777777777777777777777 111111111 1 000000000000000000000 777777777777 1 1
lowQualScore : 5 6 333333333333333333333333 6 6 0 1 0 7 22 7 6 0 0 1 3 7 5 5 555555555555555 99 8888888888888888888888 999999 8 9 44 111 0000 888 1 1 1 6 44444444444444444444444444444444444444444444444 88888888 0 8 4 11111 1 4 66 222222222222222222222222222222222222222222222222 0 666666666 3 4 444444444444444444444 3 6 6 1 55 4 777777777777 0 7
lowQualScore : . . ........................ . . . . . . .. . . . . . . . . . ............... .. ...................... ...... . . .. ... .... ... . . . . ............................................... ........ . . . ..... . . .. ................................................ . ......... . . ..................... . . . . .. . ............ . .
lowQualScore : 0 7 000000000000000000000000 0 0 7 0 7 0 00 0 0 0 0 4 2 4 4 0 000000000000000 22 5555555555555555555555 999999 3 7 77 666 4444 111 8 0 0 7 55555555555555555555555555555555555555555555555 99999999 7 9 4 11111 0 4 11 222222222222222222222222222222222222222222222222 7 000000000 8 4 111111111111111111111 5 0 0 2 55 0 555555555555 0 0
consensus : ATTTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTT----TGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATNAANCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTT-----NAATCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA--G-CTGGTTCCCGAAATGANGTCGGACAGGNAAC-AGAGTAATCGTN-ATG-T-CAAAGGGAAA-T-AA-----TCAAT-T--CT--------------AAT---------A-----------G----GTC--TAGT---------CTCCCTTTGACCATTACAGAA-ATTAAATCGAGATTATTCGGAGCACTTAATGGTCAAAGGGAAACAACTCGATTNNCATTNTA-T--TTTGTTTGG-GTTGTACGAGTTGTCTTTCT
Reference ( gi|1 ) : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CC----TGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTT-----CAATCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCACATTTTGTGAA--GTCTGGTTCCCGGATTGAGGTTAGGTAGGAAATCAGAGTAATTGTA-ATG-T-CAAAGGGAGA-T-AA-----TTAAT-T--CT--------------AAT---------A-----------A----GCT--TAGT---------CTCCCTTTGACCATTACTGAA-ATTAAATCGAAATTGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATA-TAGTCTATT--G-GTTGTACGAGTAGTCTTTCT
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTT------------------AGAAGATGCCGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--A-T----------TGCAATTT-----AAATCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCATATTTT-TGAAAAGGCTGGTTCCCGAGATGATGTAAGGC-----------GTAATTGTT-ATGAT-CAAAGGGAGA-T-AA-----TCAAT-T--CT--------------AAT---------AGTCAATCAAAAA----GCT--TAGT---------CTCCCTTTGACCATTACTGAC-ATTAA
gi|5 : ATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTT----TGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTT-----CAATCGCACTTTCT
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTT----TGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTT-----CAATCGCACTTGCTTAt
gi|13 : AACCACTTAATAAAGTATT-A-GAAGCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAAAAATTAC---C--AAT----------CGGGATTT-----
gi|4 : atacTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATC---TTATTTGA------A----A--AAT----------T---ATTTGAAAATAATTGCACATTCTCG---TCAT----CATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAAATTTTGt
gi|3 : ATAAATATCGCCAAAATAAAGACAATATATTGTTATTC-AAAC--TATTTGACTGATTGTTTCAGCGCGCAATTC-----AAATCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|9 : aAATCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTACGTT--------------GTT-----AT---GGTCAA--AGGGA-----AGTAATCACA-A-----------GAAA-TCAA-----TT-------CC--------------AAT---------T-----------G----GCC--TAGT---------CTCCCTTTGACCATTATAGAA-ATTAAAttcccgaaatgaagttggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|8 : AATCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCACATT
gi|10 : AATCGCATAATCTCATCTATGTC---CATC-------GGTTTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|18 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgagcatgaaatatAATCGCATAATCTCATCCAAATC---CATCG--CTT----T-ATGGAAATCGG-CAAAGTACTCCGAATGT
gi|3 : A--GTCTGGTTCCCGAAATGAAGTTGGACAGGTAACAAGACTAAGTGTT-ACG-TTCTAAGGGAAA-T-AA-----TCAAT-T--CC--------------AAT---------C-----------G----GTC--TAGT---------CTCCCTTTGACCATTACAGAA-ATTAAATCGAGATt
gi|7 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatGTTGAATTGAAAAT-AGA--AACTGTCTATGGT-CAAAGGGAAA-T-AA-----TCAAT-T--CTTCTTCCAGTATTCCAATTCC------A-----------ATTG-GCC--TAAT---------CTCCCTTGGACAATTACAGAA-ATTAAATCGAGATTgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|8 : AATAATCGT----G-T-CAAAGGAAAA-T-AA-----CCAAT-T--CT--------------AGTTGACTCAGCA-----------A----GTC--TAGTAGGCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|4 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacattAATTTTG-AT----CAAAGGGAAA-T-AA-----TTAAT-T--CG--------------AAT---------T-----------G----GTC--TAGT---------CTCCCTTTTGCCAATACACAA-ATTAAATTGAGATT
gi|2 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaGTA-ATGGT-CAAAGGGAGACT-AAGCTTTTTGAT-TGACT--------------ATT---------A-----------GAATTGAT--TA-T---------CTCCCTTTGATCATAAC---A-ATTAtagcaaaccctttaattttgatattgttaataattgctcac
gi|10 : atttggtagtgtagagttcttccccttagaagatgccggctacacgaacagaaattatataaggaattgctcatttgataaagcacgtttgtggtgtaagttacataaaaccattaatgaaaatttcagaaagcattaatcaatctgaaagaaataaacatcgacataataaagacaatattttgttatttgaaaataaattgcaatttaaatcgcactttctcaaccatttccggcaaaatttgcgataacagaaatcattgaattattccaaatgccatatttttgaaaaggctggttcccgagatgatgtaaggcg-ATGCT-CAAAGGGAAG-T-TA-----TCAATAT--CA--------------AAT---------T-----------T----GTT--TACT---------CTCCCTTTGACCATtgacattaa
gi|10 : tG-T-CAAAGGGAGAGT-AA-----ACAAA-T--TT--------------GAT---------A-----------------TTGATAAC---------TTCCCTTTGAGCA----TGAA-AT---ATTGTAA-CATTCGGAGCACTTgaaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatg--------------AAT---------A------------------T--TAGT---------CTCCCCTTGACCATTACAGAA-ATTAAATCAAA--------------------------GGGGAACAACTCGACTGACTTTATATTAATTTG----G-GTTTTACGAGTTGTCTTTtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA----TTTGTTTGG-GTTGTACGAGTTGTCTTTCTattattg
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATA-T--TTGATT--GTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA----TTTGTTTGG-GTTGTACGAGTTATATTTCTtattgac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|21 ): ATAAACCTCTTGCAACAAAATGGTCAAAGACAGACAATTCGATCGATTCTATTTTATATC
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT
Alignments
lowQualScore : 33333333333 1111111 77777777777777777777777777 11111 1111 333333333333 333333333333333333 111111 33333333333333333333 444444444444444444444444 111111111 2222222222 111 222
lowQualScore : 3 3 3 0 33333333333 8 1 1 2 7 3 2222222 55555555555555555555555555 1 00000 1 1 33 77 999 2 3 0000 5 777777777777 2 11 77 333333333333333333 0 888888 4 1 4 66666666666666666666 4 1 666666666666666666666666 0 666666666 4 5555555555 0 2 000 1 444 3 0
lowQualScore : . . . . ........... . . . . . . ....... .......................... . ..... . . .. .. ... . . .... . ............ . .. .. .................. . ...... . . . .................... . . ........................ . ......... . .......... . . ... . ... . .
lowQualScore : 0 2 5 8 88888888888 0 0 0 5 1 4 9999999 00000000000000000000000000 0 00000 0 4 22 00 111 5 2 4444 0 222222222222 5 55 88 222222222222222222 7 666666 4 4 4 11111111111111111111 4 6 666666666666666666666666 9 000000000 4 1111111111 2 5 777 0 777 5 8
consensus : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGAAA-TAATCAA--------------------T-TCCAAT---------N--G-----------GCCTA---------GTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTAT--TTTGTTTGGGTTGTACGAGTTGTCTTTCT
Reference ( family-2103 ) : ATTTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATNAANCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTCGGACAGGNAA-CA-GAGTAATCGTN-ATG-T-CAAAGGGAAA-TAATCAA--------------------T-TCTAAT---------A--G-----------GTCTA---------GTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TATTCGGAGCACTTAATGGTCAAAGGGAAACAACTCGATTNNCATTNTAT--TTTGTTTGGGTTGTACGAGTTGTCTTTCT
gi|1 : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CCTGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTCAA-----TCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCACATTTTGTGAA---GTCTGGTTCCCGGATTGAGGTTAGGTAGGAAATCA-GAGTAATTGTA-ATG-T-CAAAGGGAGA-TAATTAA--------------------T-TCTAAT---------A--A-----------GCTTA---------GTCTCCCTTTGACCATTACTGAA-ATTAAATCGAAAT-TGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATATAGTCTATT--GGTTGTACGAGTAGTCTTTCT
gi|10 : TC-ATGCT-CAAAGGGAAG-TTATCAA--------------------TATCAAAT---------T--T-----------GTTTA---------CTCTCCCTTTGACCAT
gi|10 : tG-T-CAAAGGGAGAGTAAACAA--------------------A-TTTGAT---------ATTG-----------AT--A---------ACTTCCCTTTGAGCAT----GAA-AT---ATTGTAAC--ATTCGGAGCACTTaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|10 : tatgAA-----TCGCATAATCTCATCTATGTCC---ATCG------GT-TTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgagcatgaaatatTA---------GTCTCCCCTTGACCATTACAGAA-ATTAAATC---------------------------AAAGGGGAACAACTCGACTGACTTTATA---TTAATTTGGGTTTTACGAGTTGTCTTT
gi|13 : aatatATACAACCACTTAATAAAGTATT-AGAA-GCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAAAAATTAC---C--AAT----------CGGGATTTattattg
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCTt
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATAT--TT-GATTGTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTATATTTCTtattgac
gi|18 : AA-----TCGCATAATCTCATCCAAATCC---ATCG--CTT--TAT---GGAAATCGG-CAAAGTACTCCGAATGtattgaa
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTTAGAAGATGC--------------CGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--T-----A--AAT----------TGCAATTTAAA-----TCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCATATTTT-TGAAAAGG-CTGGTTCCCGAGATGATGT---A-AGGC--------GTAATTGTT-ATGAT-CAAAGGGAGA-TAATCAA--------------------T-TCTAAT---------A--GTCAATCAAAAAGCTTA---------GTCTCCCTTTGACCATTACTGAC-ATTAAtt
gi|21 : AATGGTCAAAGACAGACAATTCGATCG--ATTCTAT--TTTAT
gi|3 : ataaacctcttgcaacaaAATAAATATCGCCAAAATAAAGACAATATATTGTTATTC-AAAC--TATTTGACTGATTGTTTCAGCGCGCAATTCAAA-----TCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGT-TC-CCGAAAT-----GAAGTatc
gi|3 : -CTGGTTCCCGAAATGAAGTTGGACAGGTAA-CAAGACTAAGTGTT-ACG-TTCTAAGGGAAA-TAATCAA--------------------T-TCCAAT---------C--G-----------GTCTA---------GTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGATGTAGT-GGACCATTTAATtggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|4 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatagtTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATCTT---ATTTGAAAA------------AT----------T---ATTTGAAAATAATTGCACATTCTCGTC---ATC----ATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAAATTTT-tttgttttatatactcacatttaataatatcagagcattaa
gi|4 : -T-CAAAGGGAAA-TAATTAA--------------------T-TCGAAT---------T--G-----------GTCTA---------GTCTCCCTTTTGCCAATACACAA-ATTAAATTGAGAT-Tgatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|5 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaaattttgaATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACTTTCTtagcaaaccctttaattttgatattgttaataattgctcac
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACt
gi|7 : GTTGAATTGAAAA-TA-GA--AACTGTCTATGGT-CAAAGGGAAA-TAATCAATTCTTCTTCCAGTATTCCAAT-TCCAAT---------T--G-----------GCCTA---------ATCTCCCTTGGACAATTACAGAA-ATTAAATCGAGAT-Tttgctta
gi|8 : AA-----TCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCACATTtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|8 : AATAATCGT----G-T-CAAAGGAAAA-TAACCAA--------------------T-TCTAGTTGACTCAGCA--A-----------GTCTAGTAGGCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|9 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacattAA-----TCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTACGTT---------------GTT------ATG--GTC--AAAGGGA------AGTAATCA---------CAA---GA----AATCAA--------------------T-TCCAAT---------T--G-----------GCCTA---------GTCTCCCTTTGACCATTATAGAA-ATTAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT
Alignments
lowQualScore : 33333333333 1111111 77777777777777777777777777 11111 1111 1 3333333 11 11111 2222222222 1 444444444444444444444444444444444444444444444444444444444444 22222222222 333
lowQualScore : 1 3 3 0 33333333333 8 1 1 1 7 3 2222222 55555555555555555555555555 1 00000 1 1 33 77 999 2 3 0000 5 0 8888888 3 00 4 99999 8888888888 4 77 3 4 4 4 555555555555555555555555555555555555555555555555555555555555 0 4 11111111111 22 2 7 1 222 0
lowQualScore : . . . . ........... . . . . . . ....... .......................... . ..... . . .. .. ... . . .... . . ....... . .. . ..... .......... . .. . . . . ............................................................ . . ........... .. . . . ... .
lowQualScore : 0 2 5 8 88888888888 0 0 0 0 1 4 9999999 00000000000000000000000000 0 00000 0 4 22 00 111 5 2 4444 0 0 0000000 2 55 5 44444 0000000000 8 44 3 4 4 4 999999999999999999999999999999999999999999999999999999999999 9 4 55555555555 00 5 2 0 888 8
consensus : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TC------------CA-A------TTG-----------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
Reference ( family-2103 ) : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TC------------CA-A------TNG-----------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTAT--TTTGTTTGGGTTGTACGAGTTGTCTTTCT
gi|1 : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CCTGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTCAA-----TCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCACATTTTGTGAA---GTCTGGTTCCCGGATTGAGGTTAGGTAGGAAATCA-GAGTAATTGTA-ATG-T-CAAAGGGA-GATAATT-AA--------------------T-TC------------TA-A------TAA-----------GCTTAGTCTCCCTTTGACCATTACTGAA-ATTAAATCGAAAT-TGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATATAGTCTATT--GGTTGTACGAGTAGTCTTTCT
gi|10 : TC-ATGCT-CAAAGGGA-AGTTATC-AA--------------------TATC------------AA-A------TTT-----------GTTTACTCTCCCTTTGACCAT
gi|10 : tG-T-CAAAGGGAGAGTAAACAAA--------------------T-TT------------GATA------TTG-----------A--TAACTTCCCTTTGAGCAT----GAA-AT---ATTGTAA--CATTCGGAGCACTTaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|10 : tatgAA-----TCGCATAATCTCATCTATGTCC---ATCG------GT-TTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgagcatgaaatatTAGTCTCCCCTTGACCATTACAGAA-ATTAAATC---------------------------AAAGGGGAACAACTCGACTGACTTTATA---TTAATTTGGGTTTTACGAGTTGTCTTT
gi|13 : aatatATACAACCACTTAATAAAGTATT-AGAA-GCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAAAAATTAC---C--AAT----------CGGGATTTattattg
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCTt
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATA---TTTGATTGTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTATATTTCTtattgac
gi|18 : AA-----TCGCATAATCTCATCCAAATCC---ATCG--CTT--TAT---GGAAATCGG-CAAAGTACTCCGAATGtattgaa
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTTAGAAGATGC--------------CGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--A-T----------TGCAATTTAAA-----TCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCATATTTT-TGAAAAGG-CTGGTTCCCGAGATGATGT---A-AGGC--------GTAATTGTT-ATGAT-CAAAGGGA-GATAATC-AA--------------------T-TC------------TA-A------TAGTCAATCAAAAAGCTTAGTCTCCCTTTGACCATTACTGAC-ATTAAtt
gi|21 : AATGGTCAAAGACAGACAATTCGATCG--ATTCTAT--TTTAT
gi|3 : ataaacctcttgcaacaaAATAAATATCGCCAAAATAAAGACAATATATTGTTATTC-AAAC--TATTTGACTGATTGTTTCAGCGCGCAATTCAAA-----TCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGT-TC-CCGAAAT-----GAAGTatc
gi|3 : -CTGGTTCCCGAAATGAAGTTGGACAGGTAA-CAAGACTAAGTGTT-ACG-TTCTAAGGGA-AATAATC-AA--------------------T-TC------------CA-A------TCG-----------GTCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGATGTAGT-GGACCATTTAATtggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|4 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatagtTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATCTT---ATTTGAAAA------------AT----------T---ATTTGAAAATAATTGCACATTCTCGTC---ATC----ATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAAATTTT-tttgttttatatactcacatttaataatatcagagcattaa
gi|4 : -T-CAAAGGGA-AATAATT-AA--------------------T-TC------------GA-A------TTG-----------GTCTAGTCTCCCTTTTGCCAATACACAA-ATTAAATTGAGAT-TTAGCAAACCCTTTAATgatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|5 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaaattttgaATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACTTTCTtttgatattgttaataattgctcac
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACt
gi|7 : GTTGAATTGAAAA-TA-GA--AACTGTCTATGGT-CAAAGGGA-AATAATC-AATTCTTCTTCCAGTATTCCAAT-TC------------CA-A------TTG-----------GCCTAATCTCCCTTGGACAATTACAGAA-ATTAAATCGAGAT-Tttgctta
gi|8 : AA-----TCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCACATTtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|8 : TAATAATC-GTG-T-CAAAGGAA-AATAACC-AA--------------------T-TCTAGTTGACTCAGCA-AGTCTAGTAG-----------GCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|9 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacatAA-----TCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTACGTTGT-TA--------TGGT---CAA-------------AGGGA------AGTAATCA---------CAA---GA----AATC-AA--------------------T-TC------------CA-A------TTG-----------GCCTAGTCTCCCTTTGACCATTATAGAA-ATTAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT
Alignments
lowQualScore : 33333333333 1111111 77777777777777777777777777 11111 1111 1 3333333 11 11111 2222222222 1 33333333333333333333 555555555555555555 22222222222 111
lowQualScore : 1 3 3 0 33333333333 8 1 1 1 7 3 2222222 55555555555555555555555555 1 00000 1 1 33 77 999 2 3 0000 5 0 8888888 3 00 4 99999 8888888888 4 77 3 4 4 4 66666666666666666666 4 3 4 333333333333333333 0 4 11111111111 22 2 7 1 111 0
lowQualScore : . . . . ........... . . . . . . ....... .......................... . ..... . . .. .. ... . . .... . . ....... . .. . ..... .......... . .. . . . . .................... . . . .................. . . ........... .. . . . ... .
lowQualScore : 0 2 5 8 88888888888 0 0 0 0 1 4 9999999 00000000000000000000000000 0 00000 0 4 22 00 111 5 2 4444 0 0 0000000 2 55 5 44444 0000000000 8 44 3 4 4 4 11111111111111111111 4 7 4 999999999999999999 9 4 55555555555 00 5 2 0 777 8
consensus : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
Reference ( family-2103 ) : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCCA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
gi|1 : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CCTGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTCAA-----TCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCACATTTTGTGAA---GTCTGGTTCCCGGATTGAGGTTAGGTAGGAAATCA-GAGTAATTGTA-ATG-T-CAAAGGGA-GATAATT-AA--------------------T-TCTA-ATAA------------------GCTTAGTCTCCCTTTGACCATTACTGAA-ATTAAATCGAAAT-TGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATATAGTCTATT--GGTTGTACGAGTAGTCTTTCT
gi|10 : TC-ATGCT-CAAAGGGA-AGTTATC-AA--------------------TATCAA-ATTT------------------GTTTACTCTCCCTTTGACCAT
gi|10 : tG-T-CAAAGGGAGAGTAAACAAA--------------------T-TTGATATTG------------------A--TAACTTCCCTTTGAGCAT----GAA-AT---ATTGTAA--CATTCGGAGCACTTaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|10 : tatgAA-----TCGCATAATCTCATCTATGTCC---ATCG------GT-TTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgagcatgaaatatTAGTCTCCCCTTGACCATTACAGAA-ATTAAATC---------------------------AAAGGGGAACAACTCGACTGACTTTATA---TTAATTTGGGTTTTACGAGTTGTCTTT
gi|13 : aatatATACAACCACTTAATAAAGTATT-AGAA-GCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAAAAATTAC---C--AAT----------CGGGATTTattattg
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCTt
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATA---TTTGATTGTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTATATTTCTtattgac
gi|18 : AA-----TCGCATAATCTCATCCAAATCC---ATCG--CTT--TAT---GGAAATCGG-CAAAGTACTCCGAATGtattgaa
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTTAGAAGATGC--------------CGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--A-T----------TGCAATTTAAA-----TCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCATATTTT-TGAAAAGG-CTGGTTCCCGAGATGATGT---A-AGGC--------GTAATTGTT-ATGAT-CAAAGGGA-GATAATC-AA--------------------T-TCTA-ATAGTCAATCAAAAA-------GCTTAGTCTCCCTTTGACCATTACTGAC-ATTAAtt
gi|21 : AATGGTCAAAGACAGACAATTCGATCG--ATTCTA---TTT
gi|3 : ataaacctcttgcaacaaAATAAATATCGCCAAAATAAAGACAATATATTGTTATTC-AAAC--TATTTGACTGATTGTTTCAGCGCGCAATTCAAA-----TCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGT-TC-CCGAAAT-----GAAGTtatatc
gi|3 : -CTGGTTCCCGAAATGAAGTTGGACAGGTAA-CAAGACTAAGTGTT-ACG-TTCTAAGGGA-AATAATC-AA--------------------T-TCCA-ATCG------------------GTCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGATGTAGT-GGACCATTTAATtggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|4 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatagtTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATCTT---ATTTGAAAA------------AT----------T---ATTTGAAAATAATTGCACATTCTCGTC---ATC----ATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAAATTTT-tttgttttatatactcacatttaataatatcagagcattaa
gi|4 : -T-CAAAGGGA-AATAATT-AA--------------------T-TCGA-ATTG------------------GTCTAGTCTCCCTTTTGCCAATACACAA-ATTAAATTGAGAT-TTAGCAAACCCTTTAATgatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|5 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaaattttgaATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACTTTCTtttgatattgttaataattgctcac
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACt
gi|7 : GTTGAATTGAAAA-TA-GA--AACTGTCTATGGT-CAAAGGGA-AATAATC-AATTCTTCTTCCAGTATTCCAAT-TCCA-ATTG------------------GCCTAATCTCCCTTGGACAATTACAGAA-ATTAAATCGAGAT-Tttgctta
gi|8 : AA-----TCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCACATTtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|8 : TAATAATC-GTG-T-CAAAGGAA-AATAACC-AA--------------------T-TCTA-GTTGACTCAGCAAGTCTAGTAGGCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|9 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacatAA-----TCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTACGTTGT-TA--------TGGT---CAA-------------AGGGA------AGTAATCA---------CAA---GA----AATC-AA--------------------T-TCCA-ATTG------------------GCCTAGTCTCCCTTTGACCATTATAGAA-ATTAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT
Alignments
lowQualScore : 33333333333 1111111 77777777777777777777777777 11111 1111 1 3333333 11 11111 2222222222 1 33333333333333333333 555555555555555555 22222222222 111
lowQualScore : 1 3 3 0 33333333333 8 1 1 1 7 3 2222222 55555555555555555555555555 1 00000 1 1 33 77 999 2 3 0000 5 0 8888888 3 00 4 99999 8888888888 4 77 3 4 4 4 66666666666666666666 4 1 4 333333333333333333 0 4 11111111111 22 2 7 1 111 0
lowQualScore : . . . . ........... . . . . . . ....... .......................... . ..... . . .. .. ... . . .... . . ....... . .. . ..... .......... . .. . . . . .................... . . . .................. . . ........... .. . . . ... .
lowQualScore : 0 2 5 8 88888888888 0 0 0 0 1 4 9999999 00000000000000000000000000 0 00000 0 4 22 00 111 5 2 4444 0 0 0000000 2 55 5 44444 0000000000 8 44 3 4 4 4 11111111111111111111 4 0 4 999999999999999999 9 4 55555555555 00 5 2 0 777 8
consensus : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
Reference ( family-2103 ) : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
gi|1 : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CCTGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTCAA-----TCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCACATTTTGTGAA---GTCTGGTTCCCGGATTGAGGTTAGGTAGGAAATCA-GAGTAATTGTA-ATG-T-CAAAGGGA-GATAATT-AA--------------------T-TCTA-ATAA------------------GCTTAGTCTCCCTTTGACCATTACTGAA-ATTAAATCGAAAT-TGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATATAGTCTATT--GGTTGTACGAGTAGTCTTTCT
gi|10 : TC-ATGCT-CAAAGGGA-AGTTATC-AA--------------------TATCAA-ATTT------------------GTTTACTCTCCCTTTGACCAT
gi|10 : tG-T-CAAAGGGAGAGTAAACAAA--------------------T-TTGATATTG------------------A--TAACTTCCCTTTGAGCAT----GAA-AT---ATTGTAA--CATTCGGAGCACTTaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|10 : tatgAA-----TCGCATAATCTCATCTATGTCC---ATCG------GT-TTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgagcatgaaatatTAGTCTCCCCTTGACCATTACAGAA-ATTAAATC---------------------------AAAGGGGAACAACTCGACTGACTTTATA---TTAATTTGGGTTTTACGAGTTGTCTTT
gi|13 : aatatATACAACCACTTAATAAAGTATT-AGAA-GCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAAAAATTAC---C--AAT----------CGGGATTTattattg
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCTt
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATA---TTTGATTGTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTATATTTCTtattgac
gi|18 : AA-----TCGCATAATCTCATCCAAATCC---ATCG--CTT--TAT---GGAAATCGG-CAAAGTACTCCGAATGtattgaa
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTTAGAAGATGC--------------CGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--A-T----------TGCAATTTAAA-----TCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCATATTTT-TGAAAAGG-CTGGTTCCCGAGATGATGT---A-AGGC--------GTAATTGTT-ATGAT-CAAAGGGA-GATAATC-AA--------------------T-TCTA-ATAGTCAATCAAAAA-------GCTTAGTCTCCCTTTGACCATTACTGAC-ATTAAtt
gi|21 : AATGGTCAAAGACAGACAATTCGATCG--ATTCTA---TTT
gi|3 : ataaacctcttgcaacaaAATAAATATCGCCAAAATAAAGACAATATATTGTTATTC-AAAC--TATTTGACTGATTGTTTCAGCGCGCAATTCAAA-----TCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGT-TC-CCGAAAT-----GAAGTtatatc
gi|3 : -CTGGTTCCCGAAATGAAGTTGGACAGGTAA-CAAGACTAAGTGTT-ACG-TTCTAAGGGA-AATAATC-AA--------------------T-TCCA-ATCG------------------GTCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGATGTAGT-GGACCATTTAATtggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|4 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatagtTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATCTT---ATTTGAAAA------------AT----------T---ATTTGAAAATAATTGCACATTCTCGTC---ATC----ATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAAATTTT-tttgttttatatactcacatttaataatatcagagcattaa
gi|4 : -T-CAAAGGGA-AATAATT-AA--------------------T-TCGA-ATTG------------------GTCTAGTCTCCCTTTTGCCAATACACAA-ATTAAATTGAGAT-TTAGCAAACCCTTTAATgatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|5 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaaattttgaATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACTTTCTtttgatattgttaataattgctcac
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAAAA--TA----------------------CACTTTCAA-----TCGCACt
gi|7 : GTTGAATTGAAAA-TA-GA--AACTGTCTATGGT-CAAAGGGA-AATAATC-AATTCTTCTTCCAGTATTCCAAT-TCCA-ATTG------------------GCCTAATCTCCCTTGGACAATTACAGAA-ATTAAATCGAGAT-Tttgctta
gi|8 : AA-----TCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCACATTtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|8 : TAATAATC-GTG-T-CAAAGGAA-AATAACC-AA--------------------T-TCTA-GTTGACTCAGCAAGTCTAGTAGGCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|9 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacatAA-----TCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTACGTTGT-TA--------TGGT---CAA-------------AGGGA------AGTAATCA---------CAA---GA----AATC-AA--------------------T-TCCA-ATTG------------------GCCTAGTCTCCCTTTGACCATTATAGAA-ATTAAA
blockSeqs : C A A TCTTTGTTTTT C C C G G A TAATAAA TATTTGACTGATTGTTTCAGCGCG A AATAA T T TG GG ATT G A TACG C . AAAAGG T GA T TGGAC TAACAAGAC T CT C T G A TTCTTCTTCCAGTATTCCAA A A T ACTCAGCAAGTCTAGTAG T TGTAGTGGAC AC G A A .
blockSeqs : A A T TCTTTGTTTTT . C T G A A AAATAAA ATTACCAATCG A . T C AA GG C G A AACA . . . T AA A TGAAT AAATAGA T C A . . . . . G . TCAATCAAAAA . TTTAGCAAAC AT G C T .
blockSeqs : A A T . . T C G A C TAATAAA TAAATTG G . A C TT GA T G A AACA . . . . . A GAAG T T G . . . . . T . . . CATTCGGAG CT . A A .
blockSeqs : . G A T A A T ATT C . G C CT GG T T A TAAA . . CG A T . . . . . . C . . . . . C T .
blockSeqs : G A T . . . TA C . T C TA . T G A CGGA . C C . . . . . . G . . . . C .
blockSeqs : . . . TA . G A CT . A . . CCC . . . . . . . . C . . .
blockSeqs : . A . A . . . . G . . . . . . . T . . .
blockSeqs : . . . . . . . C . . .
blockSeqs : .
blockSeqCons : TAATTG******************** AAG******* ***
originalCons : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAA--TA----A--AAT----------CGCAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGNAA-CA-GAGTAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
finalCons : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAAAATAATTG--------------------CAATTTNAA-----TCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCACATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGGAAG-------TAATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATTG------------------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT
Alignments
lowQualScore : 33333333333 1111111 555555555555555555555555555555 1111 22222222 3333333333333333333 111 111111 33333333333333333333 444444444444444444444444444444 22222222222 111
lowQualScore : 1 3 3 0 33333333333 8 1 1 1 7 3 2222222 666666666666666666666666666666 55 1 1 33 77 999 2 3 0000 5 6 8 88888888 3 44 4 6666666666666666666 99 111 0 888888 4 4 4 66666666666666666666 4 1 4 888888888888888888888888888888 0 4 11111111111 22 2 7 1 111 0
lowQualScore : . . . . ........... . . . . . . ....... .............................. .. . . .. .. ... . . .... . . . ........ . .. . ................... .. ... . ...... . . . .................... . . . .............................. . . ........... .. . . . ... .
lowQualScore : 0 2 5 8 88888888888 0 0 0 0 1 4 9999999 777777777777777777777777777777 00 0 4 22 00 111 5 2 4444 0 7 0 88888888 2 55 5 8888888888888888888 22 777 7 999999 4 4 4 11111111111111111111 4 0 4 444444444444444444444444444444 9 4 55555555555 00 5 2 0 777 8
consensus : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAA-------AA--T--AA-TTG----------CAATTTCAATCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCAC-ATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGG----A------AG--TA---ATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATT------------------G-----------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
Reference ( family-2103 ) : ATTTGGTAGTGTAGAGTTNTTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTCATTTAATAAAGCACGCTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTAATCAANCTGAAANAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAA-------AA--T--AA-TTG----------CAATTTNAATCGCACATTCTCANCCACNTCCGGCATCG--TTTGGTATNACGGAAATCGT-CGAAGTATTCCGAATGCCAC-ATTTT-TGAA---G-CTGGTTCCCGAAATGANGTTGGATAGG----A------AG--TA---ATCGTC-ATG-T-CAAAGGGA-AATAATC-AA--------------------T-TCNA-ATT------------------G-----------GCCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGAT-TANTCGGANCACTTAATGGTCAAAGGGAAACAACTCGATTGATATTNTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCT
gi|1 : ATTTGGTAGTTTAGAGTTCTTCCCCTT------------------CCTGTCGGATACGCGAACAGAAATTATATAAGAATTTGCTCATTTAATAAAGCACGTTTGTGGTGTTAGGAACATTAAATCA-TTAATGAAATATTCATAAAGCATTAATCAATCTGAAATACATAAATATCGGCATAATAAAGACAATATTTTGTTATTTGAA-------AA--TAAAA-TCG----------CAATTTCAATCGCACTTTCTCAACCACATCCGGCATCA--TTTGGGATAACAGAAATCAT-CGAAGTATTCCAAATGTCAC-ATTTTGTGAA---GTCTGGTTCCCGGATTGAGGTTAGGTAGG----AAATCAGAG--TA---ATTGTA-ATG-T-CAAAGGGA-GATAATT-AA--------------------T-TCTA-ATA------------------A-----------GCTTAGTCTCCCTTTGACCATTACTGAA-ATTAAATCGAAAT-TGCTCGGCACACTTAGTTGTCAAAGGGAGACAACTCAATTGATATTATATAGTCTATT--GGTTGTACGAGTAGTCTTTCT
gi|10 : TC-ATGCT-CAAAGGGA-AGTTATC-AA--------------------TATCAA-ATT------------------T-----------GTTTACTCTCCCTTTGACCAT
gi|10 : tG-T-CAAAGGGAGAGTAAACAAA--------------------T-TTGATATT------------------G-----------A--TAACTTCCCTTTGAGCAT----GAA-AT---ATTGTAA--CATTCGGAGCACTTaatattgtaacattcggagcactttgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|10 : tatgAATCGCATAATCTCATCTATGTCC---ATCG------GT-TTACGGAAATCGG-CAAAGTGCTCCGAATGTTACAATATT-TCAT---G-CTtgccgatttccgtaaaccgatggacatagatgagattatgcgatt
gi|12 : tatggtcaaagggagagtaaacaaatttgatattgataacttccctttgTAGTCTCCCCTTGACCATTACAGAA-ATTAAATC---------------------------AAAGGGGAACAACTCGACTGACTTTATA---TTAATTTGGGTTTTACGAGTTGTCTTT
gi|13 : aatatATACAACCACTTAATAAAGTATT-AGAA-GCATTAATCAACCTGAAAGAAATTAACGTCGACAT----------ATATTTTGTTATTTGAA-------A------AA-TTAC---------CAATattattg
gi|14 : TTAATGGTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTGTCTTTCTcgggatttt
gi|15 : acaagataaTCTAAGGGAAACAACTCGAATGACATTATA---TTTGATTGTATTGTACGAGTTGTCTTTCTtattga
gi|16 : aTCAAAGGGAAATAACTCGATTTCTATTTTA---TTTGTTTGGGTTGTACGAGTTATATTTCTtattgac
gi|18 : AATCGCATAATCTCATCCAAATCC---ATCG--CTT--TAT---GGAAATCGG-CAAAGTACTCCGAATGtattgaa
gi|2 : ATTTGGTAGTGTAGAGTTCTTCCCCTTAGAAGATGC--------------CGGCTACACGAACAGAAATTATATAAGGAATTGCTCATTTGATAAAGCACGTTTGTGGTGTAAGTTACATAAAACCA-TTAATGAAAATTTCAGAAAGCATTAATCAATCTGAAAGAAATAAACATCGACATAATAAAGACAATATTTTGTTATTTGAA-------AA--T--AAATTG----------CAATTTAAATCGCACTTTCTCAACCATTTCCGGCAAAA--TTTGCGATAACAGAAATCAT-TGAATTATTCCAAATGCCAT-ATTTT-TGAAAAGG-CTGGTTCCCGAGATGATGT-----AAG----G------CG--TA---ATTGTT-ATGAT-CAAAGGGA-GATAATC-AA--------------------T-TCTA-ATA------------------GTCAATCAAAAAGCTTAGTCTCCCTTTGACCATTACTGAC-ATTAAtt
gi|21 : AATGGTCAAAGACAGACAATTCGATCG--ATTCTA---TTT
gi|3 : ataaacctcttgcaacaaAATAAATATCGCCAAAATAAAGACAATATATTGTTATTCAAACTATTTGAC--T--GA-TTGTTTCAGCGCGCAATTCAAATCGCACATTCTCAGCCACTTCCGGCATAG--TCTGGT-TC-CCGAAAT-----GAAGTtatatc
gi|3 : -CTGGTTCCCGAAATGAAGTTGGACAGGTAACA------AGACTA---AGTGTT-ACG-TTCTAAGGGA-AATAATC-AA--------------------T-TCCA-ATC------------------G-----------GTCTAGTCTCCCTTTGACCATTACAGAA-ATTAAATCGAGATGTAGT-GGACCATTTAATtggacaggtaacaagactaagtgttacgttctaagggaaataatcaattccaatcggtctagtctccctttgaccattacagaaattaaatcgagatgtagtggaccatttaattttgttttatatactcacatttaataatatcagagcattaa
gi|4 : aataaatatcgccaaaataaagacaatatattgttattcaaactatttgactgattgtttcagcgcgcaattcaaatcgcacattctcagccacttccggcatagtTCAGAAAGCATTAATTAACCGGAAAGAACTAAGCATCAACATAATAAAAACAATATCTT---ATTTGAA-------AAATT--AT-TTG----------AAAAT--AATTGCACATTCTCGTC---ATC----ATTAATTTTGGTATAACAGAAATCGTCCAAAGTTTTCCAAATGCCAA-ATTTT-tttgttttatatactcacatttaataatatcagagcattaa
gi|4 : -T-CAAAGGGA-AATAATT-AA--------------------T-TCGA-ATT------------------G-----------GTCTAGTCTCCCTTTTGCCAATACACAA-ATTAAATTGAGAT-TTAGCAAACCCTTTAATgatcaaagggaaataattaattcgaattggtctagtctcccttttgccaatacacaaattaaattgagatttagcaaaccctttaattttgatattgttaataattgctcac
gi|5 : tcagaaagcattaattaaccggaaagaactaagcatcaacataataaaaacaatatcttatttgaaaaattatttgaaaataattgcacattctcgtcatcattaattttggtataacagaaatcgtccaaagttttccaaatgccaaattttgaATTTAGTAGTGAAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGAACAGAAATTATATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAAAACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAA-------AA--T--A---------------CACTTTCAATCGCACTTTCTtttgatattgttaataattgctcac
gi|6 : TTGGTAGTGTAGAGTTATTCCCCTTAGATGATACTCTTTGTTTTTTGTCGGATACACGCACAGAAATTTTATAAGGATTTGCTTATTTAATAAAGCACGCTTGTGATGTAAGTTACATAATACCA-TTAATGAAATATTCAGAAAGCATTTATGAAACTGAAATAAATAAAC--------------GACAATATTTTGTTATTTGAA-------AA--T--A---------------CACTTTCAATCGCACt
gi|7 : GTTGAATTGA----A------AA--TAGAAACTGTCTATGGT-CAAAGGGA-AATAATC-AATTCTTCTTCCAGTATTCCAAT-TCCA-ATT------------------G-----------GCCTAATCTCCCTTGGACAATTACAGAA-ATTAAATCGAGAT-Tttgctta
gi|8 : AATCGCACAGTCTCAGTCATATCCGACATCA--TTTTGTATTAAAGAAATTGT-CGAAGTATTCCAAATGCCAC-ATTtaatatatatgcatttaactgatacttgatgtgcaaaatcttatcttaagtaataacataaaatta
gi|8 : ------AA--TA---ATCGT----G-T-CAAAGGAA-AATAACC-AA--------------------T-TCTA-GTTGACTCAGCAAGTCTAGTAG-----------GCCTTGTCTCCCTTTGGCCATTACAGAATATTAAAaataatcgtgtcaaaggaaaataaccaattctagttgactcagcaagtctagtaggccttgtctccctttggccattacagaatattaaa
gi|9 : aatcgcacagtctcagtcatatccgacatcattttgtattaaagaaattgtcgaagtattccaaatgccacattAATCGCATATTTACAACAACTTCCGGCATCA--ATTGGTATCGGAGAAATCAT-CGAAGCAGTCCGAATGTTAC-GTTGT-TA--------TGGT---CAAAG------------GG----A------AG--TA---ATCA---------CAA---GA-AAT---C-AA--------------------T-TCCA-ATT------------------G-----------GCCTAGTCTCCCTTTGACCATTATAGAA-ATTAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TATAAGTATATTGTATATCAAAGTAAATAAAAAATATCCATTAAAATGATAAAAAATACTAAAATACCACTTTTACTTTAACATTTTCGAATATATTCACTGCCCTCTA
Unaligned ( gi|17 ): TTTTAATATTTAAAGTTTTTTGGGATTAGACTTTTTGGAACATGTTGGAAATTTCATGAAGA
Unaligned ( gi|19 ): ACTAAAAAAATAACACGGCAATTAAAAAAACAATTTTGTGAGAAAAAAAACATGTTCCTAA
Unaligned ( gi|20 ): AAAGAAAGTAAAATGTCTTTATAGATTATTTGTTGTAATTTTCTTTACAAATTCGCACTTA
Unaligned ( gi|22 ): TTGCTTTAAATTTCATTTTGGGTTATAATTGCTCTGTAT