lowQualScore : 1111111111111111111111111111111111111111111 111111111111111111111111 11111111111
lowQualScore : 111 2 3333333 1111111111111111111111111111111111111111111 11 11 1111 666666666666 111 111 1 222222222222222222222222 1 11111111111 111111111 11 1 1 222 1111 1111 2222222
lowQualScore : 9 7 1 777 6 3 9 6666666 2222222222222222222222222222222222222222222 00 11 4 5555 666666666666 222 77 555 0 77 7 1 000000000000000000000000 6 5 88 0 1 5 0 1 33333333333 222222222 66 22 6 0 4 4 4 000 99 4 2222 1111 5 2 0 5 3333333 4 3
lowQualScore : . . . ... . . . ....... ........................................... .. .. . .... ............ ... .. ... . .. . . ........................ . . .. . . . . . ........... ......... .. .. . . . . . ... .. . .... .... . . . . ....... . .
lowQualScore : 7 0 0 777 0 7 0 0000000 0000000000000000000000000000000000000000000 44 00 6 8888 666666666666 444 00 666 8 44 8 8 000000000000000000000000 0 0 55 7 1 0 4 7 00000000000 999999999 11 99 4 0 0 1 4 444 00 9 1111 7777 6 7 7 9 7777777 0 3
consensus : NTCTTGTAAATTGCTGACCTCANAAACAA-GCGATTACAAT----TT-AAAAAAATA----------AAGTAAAAN--AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC--AAACA-TTNACTA--GGATTTGTCCTAATGCTTGAAAATANTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACTNGAAAGGCAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGNAA--NGGTTG--TGT-NACACTTGNCCATTCTG-TTATTTCCAGACTGGT--TACATNCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
Reference ( gi|5 ) : CTCTTATAAATTGATAACCTGACAAATAAAGCGATTAAAAT----T--AAAAAAATAT---------AAATAAAAG--AGACCTAAA-----------TACTCATTT--CAGTTAAACTGATGAC--AAGCA-GT--CTA--GGACTTGTCCTCGTGCTTGAAAATAGTATTTGGACTTAGAAGGAAGAAGTCAGTCTACAGTTTTTC-ACATGAAACGTGGAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGAAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATTTTTATGTATCACTTGTTTTCGAAGGAA--CGGTTG--TGT-AACACTTGACGATTCTG-TAATTCCCAGACTGGT--AACATCCCATTTGATGACA----TGTAACCT--TGAACCGACTAGACAAGTTAACT------CATTGCAAAGACAGAATGTAACTAT
gi|2 : TCTTGTAAATTGCTAACTTCACAAACAA-GCGATTACAAT----T--TAAAAGA-------------AATAAAAT--A----TAA---------------TTATTT--TAATTACATTGATGGCTAAAG---GTA-CTA--AGATTTGTCCTAATGCATGAAGATAAAATTTGAAATTTAAAGG
gi|1 : tcagccagataatcatttactagtgtagccatactctattcaatgtctaagtgacattttttctttttaaagaagttatgtcaacataatttaatgtcagtcaaatacgtaccagatgtcgacttgattatgtgggctggcagaaccattatgtatacatttcttatttagtatacactgtacgttatgtgtgggaaatcaatgtatttatcaacgtgtgacagtttagatactgttacattctgaacaattaacaatgcatcttgctgaaatatcatggactaatattcgctgaggattccttataagtattttgctcgacatataataataactattatttaataaattgctagaaaactaaatatcggaacttgtaaaatatatctaatgacatacatgtatacatggctgttccattaaacatacactCTTTTAAATTAATGACCTG-TAAACCAATCGATTTCAAT----TT-AAAAAAATAG---------AAGAAAAAC--AAAC-TCGA-----------TATTTGTCT--CATTTGAAATAATGAC--AGTTA-TTTACTA--AGATTTGTCTTAGTGCTTGAAACCATTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACACtcattgtaactctg
gi|4 : ttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctcTGTAAATTGCTGACCTCAAAAACAA-GCGATTACAAT----TTTAAAAAAATATGATAAAATAAAATAAAAG--AAA--TAAAAACAAATCTTATACTTATTT--CAGTT---TTGATGAC--TAAAA-TTA-CTA--TGATATGTCTCAATGCTTGAAGATATGATTTGGATTTTGAAGGc
gi|6 : ttaagtatggcagaactatttcacaatatgtaattatgtataaattttaaatttattatacaacgtgtgacaatttaaattttgttacatgtttgaacaatttacaaagaattttgatgaaatagtatggactcttatccgctggggattacacattagtattttgcatgagatataagaataactgttatttaataacttgctagaaaactttgaatatcagaacttgtaaaacacatatctaatattacataaatagctgttcaataaaaaaaatatatataaactccgTAAAATGTTGT--AACAAAATG-----------AGCAACAGCGAAACCTGA------------TACTTTTTTTTCAATTCAATTGATGAC--AAACA-TTTACTG--GGATGTGTCATAGTGCTTG-AAATAATATTTGAATTTTGAAGGttgctgtgactctgt
gi|3 : TAAAAA--AGA-----------------TGCTTTTTT--CTATTGAATTGATGAC--A--CATAT--TTAATGTATTTGTCCAAATGCTTGAAAGTAGTATTTGGATTTAGAAGGttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaagataaatttccaacggttttatctgacaacggacaataaaagcatatatcacttgttttcggcgccaatgctgtgttgtccattcggttatttccagactggttaaatgccattttatgacaaatagttttgtgtaccaactaggcaagataatttataacatagaaaaaagtaac
gi|8 : ttcaccagatgcccattaactggtgtcccaatacttattccttatatgattgactttttttaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcaattatttcagaattttataattgtcatgcactataaaaccatatttatttatcaacgtgtgacagattaaatactgttacccattttttgctgtaaataattcattttgataaaatggtcgatgagaatttaatatttgttattatgcgtgagatataataataagtattaattaataactagttagaaaaatttaaatatcggtacttgtaaaacacacatttaatacaacaaacataactggtctatagaaacattggatagaactccccttgctggactcaataactaagctataacatttATAACACTTGCAAGACAACATTCCAACAGTGTTATATGTGACAATGAACAATCAAAACATA---------CATAACACTTGTTTTCGACGCAA--AGGTTG--TGT-TACACTTGTCCATTCTG-TTATTTCCAGACTGGT--TACATGTCATTTAA-AACA----TATAACTT--TGTACCAACTAGACAAGATAACT------TATTACAttgtagtgactttg
gi|13 : gtaatttaacagaaataagcatatcagagtttttttaattactaggatttgttctaatgcttaaagataatattggagtttgaaggttgttgtaacgctgtcctccataagcaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGGAGAGGCAAAATTCTAACTGTTTTAAATCTGACAACGGACAATCAAACCATAA------TATGTATCATTTGTTTTCGACGGAA--C-GTTG--TGT-AGCACTTTACGATTATG-TTATTCCCAGACCGGT--TGCATCCCATTTAATGACA----TGTAACTG--T----------GACAAGTAAAC---------TTGCAAAGACAAAATGCAACTATttgaaaaaggt
gi|6 : AAAGATAAATTTCCAACGGTTTTA--TCTGACAACGGACAATAAAAGCATA-----------TATCACTTGTTTTCGGCGCCA--ATGCTG--TGT-------TGTCCATTCGG-TTATTTCCAGACTGGT--TAAATGCCATTTTATGACA----AATAGTTTTGTGTACCAACTAGGCAAGATAATT------TATAACATAGAAAAAA-GTAAC
gi|12 : taaaatgttgtaacaaaatgagcaacagcgaaacctgatacttttttttcaattcaattgatgacaaacatttactgggatgtgtcatagtgcttgaaataatatttgaattttgaaggttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGGAA--CGGTTG--TGT-AACACTTGACGATTCTG-TTATTCCCAGAATGGT--TACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|11 : ggatAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGGAA--CGGTTG--TGT-AACACTTGACGATTCTG-TTATTCCCAGAATGGT--TACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|20 : ggatAGACATAATTCAAACGGACTTAAAGCTGACAACGGACAAACAAAACA-AATATTTCCA--------TTGTTTTCGACGCAA--ATGTTGATCGCAAATACTTGTCCATTCTG-
gi|24 : tTCCAACGGTTTTAAATCTGACAACGGACAATTAAAACATA-----------TATCGCT--------AA-------GGTTG--TGT-TAGACATGTCCATTCCG-TTATTTCCAGA
gi|14 : CAACGGACAGTCAAAACATG---------TGTATCACATGTTTTCGACGGAAAACG-TTA--TGT-TACACTTGTCCACTCTG-TTATTTCCAGACTGGT--TACATGTCATTTGAGGACATAACTATAACGC--TGTACCATCTAGACAAGATAACTTACCAGTATTATATAGACAAAATGT
gi|18 : TTGTTTTCGACGCAA--AGGTTG--TGT-TACGCTACCCCATTCTGCTAGTT-CCAGGCTGGTTAAACGT--CATTT
gi|21 : ggaaagacataattccaaaaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacttatacaGT-TACGCTCCAC-ATTCTG-TTATTTCCATACTGG----ATA---CATTTGAGGACA----TATAAATT--TGAACCAACTGTACAAGATAACT------TATTAGATAGACAGAATATAACa
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGTGAATAAAATTAATTAGTTTAAACTAAATATCGACCAAATGCCGTTTTAATGAATGGTTATATGGATTTCGGCAGGCAGAACTATTTCACCATACATGTTTATGTACAAATTTTAATTTTATTGTGCACTATATGCTATTTCTAGAAAACCAGATTATTAATCAATGTATTTTGTATCAATGGTTTACACACTGTTTTCCATTTTGAACGGTAAAAAATGCATATTGATGAAATAGTAAGAGCTACTAACAGGCTGTTAACCATTAATATTTTGCGTAAGATATATTGATAATTATTATTTAATAACTTGGGAGAAAACGTTAAATATCGGTACTTGTAAAACACATATCTTATACCACATACAAAGCTGGTCTATGAAAACATATAATAAAACAGTCCTCATAAATTGCTGACCCTTTGACACAC
Unaligned ( gi|9 ): CTTACTGATGTTGACATAATTCATTCAATACATAAGTGACTTTTTAAAGAACGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAATTATGAATACATTATAAATTTATTACACATTATACGTTATTTCTGGATTCCAGATATATTTATAAACGTGAGACAGTGTAAAAACTGTTACATGCTGAGCAGTTAACAGTGCCTTTTGATGAAATAGTATGGACTTTTATGCACTGAGAATTATACTTTATTGTTTTGCGTGAGTAATAATAATAATATCATTTAACAACTTGCTAG
Unaligned ( gi|10 ): TAACATATAAGTGTCTTTTTGAATTTATTATGCACTATTATGTTATATCTAAAAAACAGATTCATTGATCAACGTGTAGCAGTTTAAATATATTTACCGATTTTGAGCGGTTAAAAATGCATTTTGATGAAATAGCTACTATTAGCTGCTGTTCCACGGGGATGGAGATTAAAGATAAGTGTTTTGCGTACAATATAACAATAACTATTGATTAATGTATTTTCTAGAACAGTTTAAATATTGATA
Unaligned ( gi|15 ): ATATAAACTGTTATCTAATACCTTGCTAGAAAAAATTGACTATCTGAACTTGTTAAACATAATCATAGCTGTTTAAAAAAAAAACAATTTACCTTACTGATCTCATATACAATCGATTACAATTGAAAAATGAAATAAAAGCAATTAATAATATTATAATTATT
Unaligned ( gi|16 ): ACAATTTGTATACATTTTATAAACTGATTATTCACTGCGCGTTATTTCTTGAAAACTTGATTCATTTTAACGTGTGACAGTTCATAACATTTTGAGCAATTAACAAAATATTTTATGAAATAGTATTATTTTTACATTGAAAAATAGAACTTTGTGTT
Unaligned ( gi|17 ): TATTGGAGATTCGGACTATTTATCGAATTGTAACAGTTTAAATATCGTCATCTGCTAGAGTGATTAACAGTTCATTTTGATGTAATACTAAGAACTGTTACCCGCTCGCATATGGGTATTTAACATCGGTGTTTTTCATGAAGTA
Unaligned ( gi|19 ): TATATATTTGACAATCTACATTATTTCTATATCAGAAAATTAATTTATTGATAAAAGTGAGATGGTATATATACTGTTACCCAATAGAGTTGTTAACAGTGCATGTCGGCAAAACAGTAAGAAC
Unaligned ( gi|22 ): GTTACCAACTAGAGTGATTAACAGTACATTTTCATGAAAACTTTTATCAACAGGCCTTTGAGGATTTAACAGAAGTGTTTCCAGGAGGTA
Unaligned ( gi|23 ): TTGAGGGTACATTTTGATGAAATAGTAATGCCCGGTGGCTTATGGGAAGTGTTTTACGTGAGATATAATAATGCTTTAGTGTAGTTCTA
Unaligned ( gi|25 ): TACATTTTGATGAAATAGTTAAGAACTGCTGCAGTTTGGGAATTAAACATTTGTGTTTTACGCGTGCTATAATAATAA
Unaligned ( gi|26 ): TTTATTTTGCATGATACGTCAGTTCATTTGCTGGATCCCAGATATCTTTATAAACATGTGACAGTTTAA
Alignments
lowQualScore : 111111 111111 55555555555555555555555555555555 1 2222 22 444444444444444444444444444444444444444444 22222222222 1111 111111
lowQualScore : 0 1 6 6 999999 666666 5 77777777777777777777777777777777 1 99 0 7 6 3 4 0 1 0 2 1111 22 6 2 222222222222222222222222222222222222222222 1 4 1 4 0 77777777777 2 888 66 88 1 4 5 3 0000 66 2 1 1 444444 1 0
lowQualScore : . . . . ...... ...... . ................................ . .. . . . . . . . . . .... .. . . .......................................... . . . . . ........... . ... .. .. . . . . .... .. . . . ...... . .
lowQualScore : 2 0 7 7 333333 444444 7 33333333333333333333333333333333 0 22 3 8 7 7 1 1 0 3 1 2222 77 7 5 000000000000000000000000000000000000000000 0 7 1 5 4 00000000000 6 333 11 99 0 0 9 1 6666 99 8 1 0 444444 0 1
consensus : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAAAAG--AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTCA-CATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
Reference ( family-2086 ) : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAGTAAAAN--AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAACATTNACTAGGATTTGTCCTAATGCTTGAAAATANTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACTNGAAAGGCAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGNAANG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTTCCAGACTGGTTACATNCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
gi|1 : CTTTTAAATTAATGACCTGTAAACC-AA-TCGATTTCAATTT-----AAA------A-AAATAGAAGAAAAAC--AAAC-TCGA-----------TATTTGTCT--CATTTGAAATAATGAC-AGTTATTTACTAAGATTTGTCTTAGTGCTTGAAACCATTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACAC
gi|11 : ttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctcGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTAc
gi|12 : gGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAATAT------GTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|13 : gTGGAGAGGCAAAATTCTAACTGTTTTAAATCTGACAACGGACAATCAAACCATAATAT------GTATCATTTGTTTTCGACGGAAC--GTTG--TGT-AGCACTTTAC-GATTATGTTATTCCCAGACCGGTTGCATCCCATTTAATGACA----TGTAACTG--T----------GACAAGTAAAC---------TTGCAAAGACAAAATGCAACTAT
gi|14 : CAACGGACAGTCAAAACATG---T------GTATCACATGTTTTCGACGGAAAACGTTA--TGT-TACACTTGTC-CACTCTGTTATTTCCAGACTGGTTACATGTCATTTGAGGACATAACTATAACGC--TGTACCATCTAGACAAGATAACTTACCAGTATTATATAGACAAAATGT
gi|15 : TTACTGATCTCATATAC-AA-TCGATTACAATT-------GA------A-AAATG-AAATAAAAG--CAAT-TAA
gi|2 : atataaactgttatctaataccttgctagaaaaaattgactatctgaacttgttaaacataatcatagctgtttaaaaaaaaaacaatttaccTCTTGTAAATTGCTAACTTCACAAAC-AA-GCGATTACAATTT-----AAA------AGAAATA-AAATA-----------TAA---------------TTATTT--TAATTACATTGATGGCTAAAGGT--ACTAAGATTTGTCCTAATGCATGAAGATAAAATTTGAAATTTAAAGGTCATTGTAACTCTGtaatattataattatt
gi|20 : tcagccagataatcatttactagtgtagccatactctattcaatgtctaagtgacattttttctttttaaagaagttatgtcaacataatttaatgtcagtcaaatacgtaccagatgtcgacttgattatgtgggctggcagaaccattatgtatacatttcttatttagtatacactgtacgttatgtgtgggaaatcaatgtatttatcaacgtgtgacagtttagatactgttacattctgaacaattaacaatgcatcttgctgaaatatcatggactaatattcgctgaggattccttataagtattttgctcgacatataataataactattatttaataaattgctagaaaactaaatatcggaacttgtaaaatatatctaatgacatacatgtatacatggctgttccattaaacatacactAGACATAATTCAAACGGACTTAAAGCTGACAACGGACAAACAAAACA-AATAT------TT-CCA-TTGTTTTCGACGCAAAT-GTTGATCGCAAATACTTGTC-CATTCTG
gi|21 : tGT-TACGCT--CCACATTCTGTTATTTCCATACTGGATACAT-----TTGAGGACA----TATAAATT--TGAACCAACTGTACAAGATAACT------TATTAGATAGACAGAATATAAC
gi|24 : TCCAACGGTTTTAAATCTGACAACGGACAATTAAAACATA-----------TATCGCT-------------AAG-GTTG--TGT-TAGACATGTC-CATTCCGTTATTTCCAGA
gi|3 : TTGCTGGACTCAATAACTAA-GCTATAACATTTT-----AAA------A-AAG----------------------A-----------TGCTTTTTT--CTATTGAATTGATGAC-ACATATTTAAT-GTATTTGTCCAAATGCTTGAAAGTAGTATTTGGATTTAGAAGGTTGTAGTGACTTTG
gi|4 : ttcaccagatgcccattaactggtgtcccaatacttattccttatatgattgactttttttaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcaattatttcagaattttataattgtcatgcactataaaaccatatttatttatcaacgtgtgacagattaaatactgttacccattttttgctgtaaataattcattttgataaaatggtcgatgagaatttaatatttgttattatgcgtgagatataataataagtattaattaataactagttagaaaaatttaaatatcggtacttgtaaaacacacatttaatacaacaaacataactggtctatagaaacattggatagaactccccTGTAAATTGCTGACCTCAAAAAC-AA-GCGATTACAATTTTAAAAAAATATGATA-AAATA-AAATAAAAG--AAA--TAAAAACAAATCTTATACTTATTT--CAGTT---TTGATGAC-TAAAATT-ACTATGATATGTCTCAATGCTTGAAGATATGATTTGGATTTTGAAGGTTGCTGTGACTCTG
gi|5 : ttaagtatggcagaactatttcacaatatgtaattatgtataaattttaaatttattatacaacgtgtgacaatttaaattttgttacatgtttgaacaatttacaaagaattttgatgaaatagtatggactcttatccgctggggattacacattagtattttgcatgagatataagaataactgttatttaataacttgctagaaaactttgaatatcagaacttgtaaaacacatatctaatattacataaatagctgttcaataaaaaaaatatatataaactccgTCTTATAAATTGATAACCTGACAAAT-AAAGCGATTAAAATT------AAA------A-AAATATAAATAAAAG--AGACCTAAA-----------TACTCATTT--CAGTTAAACTGATGAC-AAGCAGT--CTAGGACTTGTCCTCGTGCTTGAAAATAGTATTTGGACTTAGAAGGAAGAAGTCAGTCTACAGTTTTTCA-CATGAAACGTGGAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGAAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATTTTTATGTATCACTTGTTTTCGAAGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTAATTCCCAGACTGGTAACATCCCATTTGATGACA----TGTAACCT--TGAACCGACTAGACAAGTTAACT------CATTGCAAAGACAGAATGTAACTATt
gi|6 : cT-----AAC------A-AAATG-A-GCAACAGCGAAAC-CTGA-----------TACTTTTTTTTCAATTCAATTGATGAC-AAACATTTACTGGGATGTGTCATAGTGCTTG-AAATAATATTTGAATTTTGAAGGTTATAGTAACTCTGC----TCTC
gi|6 : taaaatgttgGAAAGATAAATTTCCAACGGTTTTA--TCTGACAACGGACAATAAAAGCATA-----------TATCACTTGTTTTCGGCGCCAAT-GCTG--TGT-------TGTC-CATTCGGTTATTTCCAGACTGGTTAAATGCCATTTTATGACA----AATAGTTTTGTGTACCAACTAGGCAAGATAATT------TATAACATAGAAAAAA-GTAACcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaagataaatttccaacggttttatctgacaacggacaataaaagcatatatcacttgttttcggcgccaatgctgtgttgtccattcggttatttccagactggttaaatgccattttatgacaaatagttttgtgtaccaactaggcaagataatttataacatagaaaaaagtaac
gi|8 : taaaatgttgtaacaaaatgagcaacagcgaaacctgatacttttttttcaattcaattgatgacaaacatttactgggatgtgtcatagtgcttgaaataatatttgaattttgaaggttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACTAGGATTTGTTCTAATGCTTAAAGATAATA-TTGGAGTTTGAAGGTTGTTGTAACGCTGT----CCTC--CAT-AAGCA
gi|8 : gtaatttaacagaaataagcatatcagagtttttttaaATAACACTTGCAAGACAACATTCCAACAGTGTTATATGTGACAATGAACAATCAAAACATA---C------ATAACACTTGTTTTCGACGCAAAG-GTTG--TGT-TACACTTGTC-CATTCTGTTATTTCCAGACTGGTTACATGTCATTTAA-AACA----TATAACTT--TGTACCAACTAGACAAGATAACT------TATTACATTGA-AAAAGGTaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacttgcaagacaacattccaacagtgttatatgtgacaatgaacaatcaaaacatacataacacttgttttcgacgcaaaggttgtgttacacttgtccattctgttatttccagactggttacatgtcatttaaaacatataactttgtaccaactagacaagataacttattacattgaaaaaggt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGAATAAAATTAATTAGTTTAAACTAAATATCGACCAAATGCCGTTTTAATGAATGGTTATATGGATTTCGGCAGGCAGAACTATTTCACCATACATGTTTATGTACAAATTTTAATTTTATTGTGCACTATATGCTATTTCTAGAAAACCAGATTATTAATCAATGTATTTTGTATCAATGGTTTACACACTGTTTTCCATTTTGAACGGTAAAAAATGCATATTGATGAAATAGTAAGAGCTACTAACAGGCTGTTAACCATTAATATTTTGCGTAAGATATATTGATAATTATTATTTAATAACTTGGGAGAAAACGTTAAATATCGGTACTTGTAAAACACATATCTTATACCACATACAAAGCTGGTCTATGAAAACATATAATAAAACAGTCCTCATAAATTGCTGACCCTTTGACACAC
Unaligned ( gi|9 ): CTTACTGATGTTGACATAATTCATTCAATACATAAGTGACTTTTTAAAGAACGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAATTATGAATACATTATAAATTTATTACACATTATACGTTATTTCTGGATTCCAGATATATTTATAAACGTGAGACAGTGTAAAAACTGTTACATGCTGAGCAGTTAACAGTGCCTTTTGATGAAATAGTATGGACTTTTATGCACTGAGAATTATACTTTATTGTTTTGCGTGAGTAATAATAATAATATCATTTAACAACTTGCTAG
Unaligned ( gi|10 ): TAACATATAAGTGTCTTTTTGAATTTATTATGCACTATTATGTTATATCTAAAAAACAGATTCATTGATCAACGTGTAGCAGTTTAAATATATTTACCGATTTTGAGCGGTTAAAAATGCATTTTGATGAAATAGCTACTATTAGCTGCTGTTCCACGGGGATGGAGATTAAAGATAAGTGTTTTGCGTACAATATAACAATAACTATTGATTAATGTATTTTCTAGAACAGTTTAAATATTGATA
Unaligned ( gi|16 ): ACAATTTGTATACATTTTATAAACTGATTATTCACTGCGCGTTATTTCTTGAAAACTTGATTCATTTTAACGTGTGACAGTTCATAACATTTTGAGCAATTAACAAAATATTTTATGAAATAGTATTATTTTTACATTGAAAAATAGAACTTTGTGTT
Unaligned ( gi|17 ): TATTGGAGATTCGGACTATTTATCGAATTGTAACAGTTTAAATATCGTCATCTGCTAGAGTGATTAACAGTTCATTTTGATGTAATACTAAGAACTGTTACCCGCTCGCATATGGGTATTTAACATCGGTGTTTTTCATGAAGTA
Unaligned ( gi|18 ): GGAAAGACATAATTCCAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTTATACATTGTTTTCGACGCAAAGGTTGTGTTACGCTACCCCATTCTGCTAGTTCCAGGCTGGTTAAACGTCATTTA
Unaligned ( gi|19 ): TATATATTTGACAATCTACATTATTTCTATATCAGAAAATTAATTTATTGATAAAAGTGAGATGGTATATATACTGTTACCCAATAGAGTTGTTAACAGTGCATGTCGGCAAAACAGTAAGAAC
Unaligned ( gi|22 ): GTTACCAACTAGAGTGATTAACAGTACATTTTCATGAAAACTTTTATCAACAGGCCTTTGAGGATTTAACAGAAGTGTTTCCAGGAGGTA
Unaligned ( gi|23 ): TTGAGGGTACATTTTGATGAAATAGTAATGCCCGGTGGCTTATGGGAAGTGTTTTACGTGAGATATAATAATGCTTTAGTGTAGTTCTA
Unaligned ( gi|25 ): TACATTTTGATGAAATAGTTAAGAACTGCTGCAGTTTGGGAATTAAACATTTGTGTTTTACGCGTGCTATAATAATAA
Unaligned ( gi|26 ): TTTATTTTGCATGATACGTCAGTTCATTTGCTGGATCCCAGATATCTTTATAAACATGTGACAGTTTAA
Alignments
lowQualScore : 222222 111111 6666666666666666666666666666666 2222 22 222222222 1111 111111
lowQualScore : 0 1 6 6 444444 999999 6 0 5 1111111111111111111111111111111 1 99 0 7 6 1 3 5 0 4 1 0 1 1111 55 1 1 1 1 0 888888888 0 22 44 66 88 1 4 5 3 0000 66 2 1 1 444444 1 0
lowQualScore : . . . . ...... ...... . . . ............................... . .. . . . . . . . . . . . .... .. . . . . . ......... . .. .. .. .. . . . . .... .. . . . ...... . .
lowQualScore : 2 0 7 7 000000 222222 7 1 7 4444444444444444444444444444444 0 22 3 8 7 0 2 0 1 0 0 3 0 2222 55 0 0 1 0 4 999999999 1 99 66 11 99 0 0 6 1 6666 99 8 1 0 444444 0 1
consensus : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
Reference ( family-2086 ) : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
gi|1 : CTTTTAAATTAATGACCTGTAAACC-AA-TCGATTTCAATTT-----AAA------A-AAATA-GAAGAA--AA----ACAAAC-TCGA-----------TATTTGTCT--CATTTGAAATAATGAC-AGTTATTTACTAAGATTTGTCTTAGTGCTTGAAACCATTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACAC
gi|11 : ttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctcGGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTAc
gi|12 : GGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|13 : TGGAGAGGCAAAATTCTAACTGTTTTAAATCTGACAACGGACAATCAAACCATAA------TATGTATCATTTGTTTTCGACGG-AAC-GTTG--TGT-AGCACTTTAC-GATTATGTTATTCCCAGACCGGTTGCATCCCATTTAATGACA----TGTAACTG--T----------GACAAGTAAAC---------TTGCAAAGACAAAATGCAACTAT
gi|14 : CAACGGACAGTCAAAACATG---------TGTATCACATGTTTTCGACGGAAAACGTTA--TGT-TACACTTGTC-CACTCTGTTATTTCCAGACTGGTTACATGTCATTTGAGGACATAACTATAACGC--TGTACCATCTAGACAAGATAACTTACCAGTATTATATAGACAAAATGT
gi|15 : TTACTGATCTCATATAC-AA-TCGATTACAATT-------GA------A-AAATG-AAATAA--AA----G-CAAT-TAA
gi|2 : atataaactgttatctaataccttgctagaaaaaattgactatctgaacttgttaaacataatcatagctgtttaaaaaaaaaacaatttaccTCTTGTAAATTGCTAACTTCACAAAC-AA-GCGATTACAATTT-----AAA------AGAAATA-AAATA----------------TAA---------------TTATTT--TAATTACATTGATGGCTAAAGG--TACTAAGATTTGTCCTAATGCATGAAGATAAAATTTGAAATTTAAAGGTCATTGTAACTCTGtaatattataattatt
gi|20 : tcagccagataatcatttactagtgtagccatactctattcaatgtctaagtgacattttttctttttaaagaagttatgtcaacataatttaatgtcagtcaaatacgtaccagatgtcgacttgattatgtgggctggcagaaccattatgtatacatttcttatttagtatacactgtacgttatgtgtgggaaatcaatgtatttatcaacgtgtgacagtttagatactgttacattctgaacaattaacaatgcatcttgctgaaatatcatggactaatattcgctgaggattccttataagtattttgctcgacatataataataactattatttaataaattgctagaaaactaaatatcggaacttgtaaaatatatctaatgacatacatgtatacatggctgttccattaaacatacactAGACATAATTCAAACGGACTTAAAGCTGACAACGGACAAACAAAACA-AA------TATTT-CCA-TTGTTTTCGACGCAAAT-GTTGATCGCAAATACTTGTC-CATTCTG
gi|21 : tGT-TACGCT--CCACATTCTGTTATTTCCATACTGGATACAT-----TTGAGGACA----TATAAATT--TGAACCAACTGTACAAGATAACT------TATTAGATAGACAGAATATAAC
gi|24 : TCCAACGGTTTTAAATCTGACAACGGACAATTAAAACATA-----------TATCGCT-------------AAG-GTTG--TGT-TAGACATGTC-CATTCCGTTATTTCCAGA
gi|3 : TTGCTGGACTCAATAACTAA-GCTATAACATTTT-----AAA------A-AAG---------------------------A-----------TGCTTTTTT--CTATTGAATTGATGAC-ACATATTTAAT-GTATTTGTCCAAATGCTTGAAAGTAGTATTTGGATTTAGAAGGTTGTAGTGACTTTG
gi|4 : ttcaccagatgcccattaactggtgtcccaatacttattccttatatgattgactttttttaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcaattatttcagaattttataattgtcatgcactataaaaccatatttatttatcaacgtgtgacagattaaatactgttacccattttttgctgtaaataattcattttgataaaatggtcgatgagaatttaatatttgttattatgcgtgagatataataataagtattaattaataactagttagaaaaatttaaatatcggtacttgtaaaacacacatttaatacaacaaacataactggtctatagaaacattggatagaactccccTGTAAATTGCTGACCTCAAAAAC-AA-GCGATTACAATTTTAAAAAAATATGATA-AAATA-AAATAA--AA----G-AAA--TAAAAACAAATCTTATACTTATTT--CAGTT---TTGATGAC-TAAAATT-ACTATGATATGTCTCAATGCTTGAAGATATGATTTGGATTTTGAAGGTTGCTGTGACTCTG
gi|5 : ttaagtatggcagaactatttcacaatatgtaattatgtataaattttaaatttattatacaacgtgtgacaatttaaattttgttacatgtttgaacaatttacaaagaattttgatgaaatagtatggactcttatccgctggggattacacattagtattttgcatgagatataagaataactgttatttaataacttgctagaaaactttgaatatcagaacttgtaaaacacatatctaatattacataaatagctgttcaataaaaaaaatatatataaactccgTCTTATAAATTGATAACCTGACAAAT-AAAGCGATTAAAATT------AAA------A-AAATATAAATAA--AA----G-AGACCTAAA-----------TACTCATTT--CAGTTAAACTGATGAC-AAGCAGT--CTAGGACTTGTCCTCGTGCTTGAAAATAGTATTTGGACTTAGAAGGAAGAAGTCAGTCTACAGTTTTTC-ACATGAAACGTGGAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGAAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATTTTTATGTATCACTTGTTTTCGAAGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTAATTCCCAGACTGGTAACATCCCATTTGATGACA----TGTAACCT--TGAACCGACTAGACAAGTTAACT------CATTGCAAAGACAGAATGTAACTATt
gi|6 : cAACA-AAATGAGCAACAGCG-AAAC-CTGA-----------TACTTTTTTTTCAATTCAATTGATGAC-AAACATTTACTGGGATGTGTCATAGTGCTTGAA-ATAATATTTGAATTTTGAAGGTTATAGTAACTCTGC----TCTC--CAT
gi|6 : taaaatgttgtGAAAGATAAATTTCCAACGGTTTTA--TCTGACAACGGACAATAAAAGCATA-----------TATCACTTGTTTTCGGCGCCAAT-GCTG--TGT-------TGTC-CATTCGGTTATTTCCAGACTGGTTAAATGCCATTTTATGACA----AATAGTTTTGTGTACCAACTAGGCAAGATAATT------TATAACATAGAAAAAA-GTAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaagataaatttccaacggttttatctgacaacggacaataaaagcatatatcacttgttttcggcgccaatgctgtgttgtccattcggttatttccagactggttaaatgccattttatgacaaatagttttgtgtaccaactaggcaagataatttataacatagaaaaaagtaac
gi|8 : taaaatgttgtaacaaaatgagcaacagcgaaacctgatacttttttttcaattcaattgatgacaaacatttactgggatgtgtcatagtgcttgaaataatatttgaattttgaaggttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACTAGGATTTGTTCTAATGCTTAAAGATAATA-TTGGAGTTTGAAGGTTGTTGTAACGCTGT----CCTC--CATAA
gi|8 : gtaatttaacagaaataagcatatcagagtttttttaaATAACACTTGCAAGACAACATTCCAACAGTGTTATATGTGACAATGAACAATCAAAACATA---------CATAACACTTGTTTTCGACGCAAAG-GTTG--TGT-TACACTTGTC-CATTCTGTTATTTCCAGACTGGTTACATGTCATTTAA-AACA----TATAACTT--TGTACCAACTAGACAAGATAACT------TATTACATTGA-AAAAGGTgcaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacttgcaagacaacattccaacagtgttatatgtgacaatgaacaatcaaaacatacataacacttgttttcgacgcaaaggttgtgttacacttgtccattctgttatttccagactggttacatgtcatttaaaacatataactttgtaccaactagacaagataacttattacattgaaaaaggt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGAATAAAATTAATTAGTTTAAACTAAATATCGACCAAATGCCGTTTTAATGAATGGTTATATGGATTTCGGCAGGCAGAACTATTTCACCATACATGTTTATGTACAAATTTTAATTTTATTGTGCACTATATGCTATTTCTAGAAAACCAGATTATTAATCAATGTATTTTGTATCAATGGTTTACACACTGTTTTCCATTTTGAACGGTAAAAAATGCATATTGATGAAATAGTAAGAGCTACTAACAGGCTGTTAACCATTAATATTTTGCGTAAGATATATTGATAATTATTATTTAATAACTTGGGAGAAAACGTTAAATATCGGTACTTGTAAAACACATATCTTATACCACATACAAAGCTGGTCTATGAAAACATATAATAAAACAGTCCTCATAAATTGCTGACCCTTTGACACAC
Unaligned ( gi|9 ): CTTACTGATGTTGACATAATTCATTCAATACATAAGTGACTTTTTAAAGAACGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAATTATGAATACATTATAAATTTATTACACATTATACGTTATTTCTGGATTCCAGATATATTTATAAACGTGAGACAGTGTAAAAACTGTTACATGCTGAGCAGTTAACAGTGCCTTTTGATGAAATAGTATGGACTTTTATGCACTGAGAATTATACTTTATTGTTTTGCGTGAGTAATAATAATAATATCATTTAACAACTTGCTAG
Unaligned ( gi|10 ): TAACATATAAGTGTCTTTTTGAATTTATTATGCACTATTATGTTATATCTAAAAAACAGATTCATTGATCAACGTGTAGCAGTTTAAATATATTTACCGATTTTGAGCGGTTAAAAATGCATTTTGATGAAATAGCTACTATTAGCTGCTGTTCCACGGGGATGGAGATTAAAGATAAGTGTTTTGCGTACAATATAACAATAACTATTGATTAATGTATTTTCTAGAACAGTTTAAATATTGATA
Unaligned ( gi|16 ): ACAATTTGTATACATTTTATAAACTGATTATTCACTGCGCGTTATTTCTTGAAAACTTGATTCATTTTAACGTGTGACAGTTCATAACATTTTGAGCAATTAACAAAATATTTTATGAAATAGTATTATTTTTACATTGAAAAATAGAACTTTGTGTT
Unaligned ( gi|17 ): TATTGGAGATTCGGACTATTTATCGAATTGTAACAGTTTAAATATCGTCATCTGCTAGAGTGATTAACAGTTCATTTTGATGTAATACTAAGAACTGTTACCCGCTCGCATATGGGTATTTAACATCGGTGTTTTTCATGAAGTA
Unaligned ( gi|18 ): GGAAAGACATAATTCCAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTTATACATTGTTTTCGACGCAAAGGTTGTGTTACGCTACCCCATTCTGCTAGTTCCAGGCTGGTTAAACGTCATTTA
Unaligned ( gi|19 ): TATATATTTGACAATCTACATTATTTCTATATCAGAAAATTAATTTATTGATAAAAGTGAGATGGTATATATACTGTTACCCAATAGAGTTGTTAACAGTGCATGTCGGCAAAACAGTAAGAAC
Unaligned ( gi|22 ): GTTACCAACTAGAGTGATTAACAGTACATTTTCATGAAAACTTTTATCAACAGGCCTTTGAGGATTTAACAGAAGTGTTTCCAGGAGGTA
Unaligned ( gi|23 ): TTGAGGGTACATTTTGATGAAATAGTAATGCCCGGTGGCTTATGGGAAGTGTTTTACGTGAGATATAATAATGCTTTAGTGTAGTTCTA
Unaligned ( gi|25 ): TACATTTTGATGAAATAGTTAAGAACTGCTGCAGTTTGGGAATTAAACATTTGTGTTTTACGCGTGCTATAATAATAA
Unaligned ( gi|26 ): TTTATTTTGCATGATACGTCAGTTCATTTGCTGGATCCCAGATATCTTTATAAACATGTGACAGTTTAA
Alignments
lowQualScore : 222222 111111 6666666666666666666666666666666 2222 22 222222222 1111 111111
lowQualScore : 0 1 6 6 444444 999999 6 0 5 1111111111111111111111111111111 1 99 0 7 6 1 3 5 0 4 1 0 1 1111 55 1 1 1 1 0 888888888 0 22 44 66 88 1 4 5 3 0000 66 2 1 1 444444 1 0
lowQualScore : . . . . ...... ...... . . . ............................... . .. . . . . . . . . . . . .... .. . . . . . ......... . .. .. .. .. . . . . .... .. . . . ...... . .
lowQualScore : 2 0 7 7 000000 222222 7 1 7 4444444444444444444444444444444 0 22 3 8 7 0 2 0 1 0 0 3 0 2222 55 0 0 1 0 4 999999999 1 99 66 11 99 0 0 6 1 6666 99 8 1 0 444444 0 1
consensus : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
Reference ( family-2086 ) : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
gi|1 : CTTTTAAATTAATGACCTGTAAACC-AA-TCGATTTCAATTT-----AAA------A-AAATA-GAAGAA--AA----ACAAAC-TCGA-----------TATTTGTCT--CATTTGAAATAATGAC-AGTTATTTACTAAGATTTGTCTTAGTGCTTGAAACCATTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACAC
gi|11 : ttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctcGGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTAc
gi|12 : GGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|13 : TGGAGAGGCAAAATTCTAACTGTTTTAAATCTGACAACGGACAATCAAACCATAA------TATGTATCATTTGTTTTCGACGG-AAC-GTTG--TGT-AGCACTTTAC-GATTATGTTATTCCCAGACCGGTTGCATCCCATTTAATGACA----TGTAACTG--T----------GACAAGTAAAC---------TTGCAAAGACAAAATGCAACTAT
gi|14 : CAACGGACAGTCAAAACATG---------TGTATCACATGTTTTCGACGGAAAACGTTA--TGT-TACACTTGTC-CACTCTGTTATTTCCAGACTGGTTACATGTCATTTGAGGACATAACTATAACGC--TGTACCATCTAGACAAGATAACTTACCAGTATTATATAGACAAAATGT
gi|15 : TTACTGATCTCATATAC-AA-TCGATTACAATT-------GA------A-AAATG-AAATAA--AA----G-CAAT-TAA
gi|2 : atataaactgttatctaataccttgctagaaaaaattgactatctgaacttgttaaacataatcatagctgtttaaaaaaaaaacaatttaccTCTTGTAAATTGCTAACTTCACAAAC-AA-GCGATTACAATTT-----AAA------AGAAATA-AAATA----------------TAA---------------TTATTT--TAATTACATTGATGGCTAAAGG--TACTAAGATTTGTCCTAATGCATGAAGATAAAATTTGAAATTTAAAGGTCATTGTAACTCTGtaatattataattatt
gi|20 : tcagccagataatcatttactagtgtagccatactctattcaatgtctaagtgacattttttctttttaaagaagttatgtcaacataatttaatgtcagtcaaatacgtaccagatgtcgacttgattatgtgggctggcagaaccattatgtatacatttcttatttagtatacactgtacgttatgtgtgggaaatcaatgtatttatcaacgtgtgacagtttagatactgttacattctgaacaattaacaatgcatcttgctgaaatatcatggactaatattcgctgaggattccttataagtattttgctcgacatataataataactattatttaataaattgctagaaaactaaatatcggaacttgtaaaatatatctaatgacatacatgtatacatggctgttccattaaacatacactAGACATAATTCAAACGGACTTAAAGCTGACAACGGACAAACAAAACA-AA------TATTT-CCA-TTGTTTTCGACGCAAAT-GTTGATCGCAAATACTTGTC-CATTCTG
gi|21 : tGT-TACGCT--CCACATTCTGTTATTTCCATACTGGATACAT-----TTGAGGACA----TATAAATT--TGAACCAACTGTACAAGATAACT------TATTAGATAGACAGAATATAAC
gi|24 : TCCAACGGTTTTAAATCTGACAACGGACAATTAAAACATA-----------TATCGCT-------------AAG-GTTG--TGT-TAGACATGTC-CATTCCGTTATTTCCAGA
gi|3 : TTGCTGGACTCAATAACTAA-GCTATAACATTTT-----AAA------A-AAG---------------------------A-----------TGCTTTTTT--CTATTGAATTGATGAC-ACATATTTAAT-GTATTTGTCCAAATGCTTGAAAGTAGTATTTGGATTTAGAAGGTTGTAGTGACTTTG
gi|4 : ttcaccagatgcccattaactggtgtcccaatacttattccttatatgattgactttttttaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcaattatttcagaattttataattgtcatgcactataaaaccatatttatttatcaacgtgtgacagattaaatactgttacccattttttgctgtaaataattcattttgataaaatggtcgatgagaatttaatatttgttattatgcgtgagatataataataagtattaattaataactagttagaaaaatttaaatatcggtacttgtaaaacacacatttaatacaacaaacataactggtctatagaaacattggatagaactccccTGTAAATTGCTGACCTCAAAAAC-AA-GCGATTACAATTTTAAAAAAATATGATA-AAATA-AAATAA--AA----G-AAA--TAAAAACAAATCTTATACTTATTT--CAGTT---TTGATGAC-TAAAATT-ACTATGATATGTCTCAATGCTTGAAGATATGATTTGGATTTTGAAGGTTGCTGTGACTCTG
gi|5 : ttaagtatggcagaactatttcacaatatgtaattatgtataaattttaaatttattatacaacgtgtgacaatttaaattttgttacatgtttgaacaatttacaaagaattttgatgaaatagtatggactcttatccgctggggattacacattagtattttgcatgagatataagaataactgttatttaataacttgctagaaaactttgaatatcagaacttgtaaaacacatatctaatattacataaatagctgttcaataaaaaaaatatatataaactccgTCTTATAAATTGATAACCTGACAAAT-AAAGCGATTAAAATT------AAA------A-AAATATAAATAA--AA----G-AGACCTAAA-----------TACTCATTT--CAGTTAAACTGATGAC-AAGCAGT--CTAGGACTTGTCCTCGTGCTTGAAAATAGTATTTGGACTTAGAAGGAAGAAGTCAGTCTACAGTTTTTC-ACATGAAACGTGGAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGAAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATTTTTATGTATCACTTGTTTTCGAAGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTAATTCCCAGACTGGTAACATCCCATTTGATGACA----TGTAACCT--TGAACCGACTAGACAAGTTAACT------CATTGCAAAGACAGAATGTAACTATt
gi|6 : cAACA-AAATGAGCAACAGCG-AAAC-CTGA-----------TACTTTTTTTTCAATTCAATTGATGAC-AAACATTTACTGGGATGTGTCATAGTGCTTGAA-ATAATATTTGAATTTTGAAGGTTATAGTAACTCTGC----TCTC--CAT
gi|6 : taaaatgttgtGAAAGATAAATTTCCAACGGTTTTA--TCTGACAACGGACAATAAAAGCATA-----------TATCACTTGTTTTCGGCGCCAAT-GCTG--TGT-------TGTC-CATTCGGTTATTTCCAGACTGGTTAAATGCCATTTTATGACA----AATAGTTTTGTGTACCAACTAGGCAAGATAATT------TATAACATAGAAAAAA-GTAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaagataaatttccaacggttttatctgacaacggacaataaaagcatatatcacttgttttcggcgccaatgctgtgttgtccattcggttatttccagactggttaaatgccattttatgacaaatagttttgtgtaccaactaggcaagataatttataacatagaaaaaagtaac
gi|8 : taaaatgttgtaacaaaatgagcaacagcgaaacctgatacttttttttcaattcaattgatgacaaacatttactgggatgtgtcatagtgcttgaaataatatttgaattttgaaggttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACTAGGATTTGTTCTAATGCTTAAAGATAATA-TTGGAGTTTGAAGGTTGTTGTAACGCTGT----CCTC--CATAA
gi|8 : gtaatttaacagaaataagcatatcagagtttttttaaATAACACTTGCAAGACAACATTCCAACAGTGTTATATGTGACAATGAACAATCAAAACATA---------CATAACACTTGTTTTCGACGCAAAG-GTTG--TGT-TACACTTGTC-CATTCTGTTATTTCCAGACTGGTTACATGTCATTTAA-AACA----TATAACTT--TGTACCAACTAGACAAGATAACT------TATTACATTGA-AAAAGGTgcaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacttgcaagacaacattccaacagtgttatatgtgacaatgaacaatcaaaacatacataacacttgttttcgacgcaaaggttgtgttacacttgtccattctgttatttccagactggttacatgtcatttaaaacatataactttgtaccaactagacaagataacttattacattgaaaaaggt
blockSeqs : T T A TTAAAA TATGAT G T AAAGAAATAAAAACAAATCTTA A TT A T G T T G A T AGTT A G T T T ATATTTTTA GA AC AT AA A A C T TAAC TG A G T TACCAG A
blockSeqs : C . . T . . . AGCAACAGCGAAACCTGA T . G . T T T A G A . . G T T ATA GA G . A A . C T . . T A T . A
blockSeqs : A . . T . . . AAAGAGACCTAAA A . A . A G T G T T . . G A G ATA CA C . A T . G G . . A A A . T
blockSeqs : A . . . . . . TAA A . C . C T T A G A A C G ATA GA T . T T . C G . . A G A . T
blockSeqs : C . . . . . . A T . . . C . . G A A A T T . CC G . T C . G T . . T A T . A
blockSeqs : . . . A T C G . CA G . T T . G T . . T A A . T
blockSeqs : C A . G T . A A . . . . . . . A . T
blockSeqs : . . G . T T .
blockSeqs : . T .
blockSeqCons : T***** AAAGAAATAA********************* ATA******
originalCons : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAAC-TAAA-----------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
finalCons : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAAAAGAAATAA---------------------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAATA------TGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGAATAAAATTAATTAGTTTAAACTAAATATCGACCAAATGCCGTTTTAATGAATGGTTATATGGATTTCGGCAGGCAGAACTATTTCACCATACATGTTTATGTACAAATTTTAATTTTATTGTGCACTATATGCTATTTCTAGAAAACCAGATTATTAATCAATGTATTTTGTATCAATGGTTTACACACTGTTTTCCATTTTGAACGGTAAAAAATGCATATTGATGAAATAGTAAGAGCTACTAACAGGCTGTTAACCATTAATATTTTGCGTAAGATATATTGATAATTATTATTTAATAACTTGGGAGAAAACGTTAAATATCGGTACTTGTAAAACACATATCTTATACCACATACAAAGCTGGTCTATGAAAACATATAATAAAACAGTCCTCATAAATTGCTGACCCTTTGACACAC
Unaligned ( gi|9 ): CTTACTGATGTTGACATAATTCATTCAATACATAAGTGACTTTTTAAAGAACGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAATTATGAATACATTATAAATTTATTACACATTATACGTTATTTCTGGATTCCAGATATATTTATAAACGTGAGACAGTGTAAAAACTGTTACATGCTGAGCAGTTAACAGTGCCTTTTGATGAAATAGTATGGACTTTTATGCACTGAGAATTATACTTTATTGTTTTGCGTGAGTAATAATAATAATATCATTTAACAACTTGCTAG
Unaligned ( gi|10 ): TAACATATAAGTGTCTTTTTGAATTTATTATGCACTATTATGTTATATCTAAAAAACAGATTCATTGATCAACGTGTAGCAGTTTAAATATATTTACCGATTTTGAGCGGTTAAAAATGCATTTTGATGAAATAGCTACTATTAGCTGCTGTTCCACGGGGATGGAGATTAAAGATAAGTGTTTTGCGTACAATATAACAATAACTATTGATTAATGTATTTTCTAGAACAGTTTAAATATTGATA
Unaligned ( gi|16 ): ACAATTTGTATACATTTTATAAACTGATTATTCACTGCGCGTTATTTCTTGAAAACTTGATTCATTTTAACGTGTGACAGTTCATAACATTTTGAGCAATTAACAAAATATTTTATGAAATAGTATTATTTTTACATTGAAAAATAGAACTTTGTGTT
Unaligned ( gi|17 ): TATTGGAGATTCGGACTATTTATCGAATTGTAACAGTTTAAATATCGTCATCTGCTAGAGTGATTAACAGTTCATTTTGATGTAATACTAAGAACTGTTACCCGCTCGCATATGGGTATTTAACATCGGTGTTTTTCATGAAGTA
Unaligned ( gi|18 ): GGAAAGACATAATTCCAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTTATACATTGTTTTCGACGCAAAGGTTGTGTTACGCTACCCCATTCTGCTAGTTCCAGGCTGGTTAAACGTCATTTA
Unaligned ( gi|19 ): TATATATTTGACAATCTACATTATTTCTATATCAGAAAATTAATTTATTGATAAAAGTGAGATGGTATATATACTGTTACCCAATAGAGTTGTTAACAGTGCATGTCGGCAAAACAGTAAGAAC
Unaligned ( gi|22 ): GTTACCAACTAGAGTGATTAACAGTACATTTTCATGAAAACTTTTATCAACAGGCCTTTGAGGATTTAACAGAAGTGTTTCCAGGAGGTA
Unaligned ( gi|23 ): TTGAGGGTACATTTTGATGAAATAGTAATGCCCGGTGGCTTATGGGAAGTGTTTTACGTGAGATATAATAATGCTTTAGTGTAGTTCTA
Unaligned ( gi|25 ): TACATTTTGATGAAATAGTTAAGAACTGCTGCAGTTTGGGAATTAAACATTTGTGTTTTACGCGTGCTATAATAATAA
Unaligned ( gi|26 ): TTTATTTTGCATGATACGTCAGTTCATTTGCTGGATCCCAGATATCTTTATAAACATGTGACAGTTTAA
Alignments
lowQualScore : 222222 111111 66666666666666666666666666666666666 2222 22 222222222 1111 111111
lowQualScore : 0 1 6 6 444444 999999 6 0 5 77777777777777777777777777777777777 1 99 0 7 6 1 3 5 0 4 1 0 1 1111 55 1 1 1 1 0 888888888 0 22 44 66 88 1 4 5 3 0000 66 2 1 1 444444 1 0
lowQualScore : . . . . ...... ...... . . . ................................... . .. . . . . . . . . . . . .... .. . . . . . ......... . .. .. .. .. . . . . .... .. . . . ...... . .
lowQualScore : 2 0 7 7 000000 222222 7 1 7 11111111111111111111111111111111111 0 22 3 8 7 0 2 0 1 0 0 3 0 2222 55 0 0 1 0 4 999999999 1 99 66 11 99 0 0 6 1 6666 99 8 1 0 444444 0 1
consensus : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAA--T---AA------------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
Reference ( family-2086 ) : NTCTTGTAAATTGCTGACCTCANAAAC-AA-GCGATTACAATTT-----AAA------A-AAATA-AAATAA--AA----G-AAA--T---AA------------TACTTNTTT--CAATTGAATTGATGAC-AAANATTTACTAGGATTTGTCCTAGTGCTTGAAGATANTATTTGGATTTTGAAGGTTGTNGTAACTCTGC----CCTC-ACATGAAACGTGNAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGGANAGGCAAAATTCCAACNGTCTTAAATCTGACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAAAG-GTTG--TGT-NACACTTGNC-CATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACA----TGTAACTT--TGNACCGACTAGACAAGNTAACT------TATTGCANAGACAAAATGTAACTAT
gi|1 : CTTTTAAATTAATGACCTGTAAACC-AA-TCGATTTCAATTT-----AAA------A-AAATA-GAAGAA--AA----ACAAA--CTC-GA------------TATTTGTCT--CATTTGAAATAATGAC-AGTTATTTACTAAGATTTGTCTTAGTGCTTGAAACCATTATTTGGATTTTGAAGGTTGTAGTAACTCTGC----CCTCAACATGAAACATGCAACAC
gi|11 : ttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctcGGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTAc
gi|12 : GGATAGGCAAAATTCTAACTGTCTTAAATCTAACAACGGACAATCAAAACATAA------TATGTATCACTTGTTTTCGACGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTTATTCCCAGAATGGTTACATCCCATTTGATGACA----TGTAACTT--TGAACCGACTACACAGGTTAACT------TATTGCAAAGACAAAATGTAACTA
gi|13 : TGGAGAGGCAAAATTCTAACTGTTTTAAATCTGACAACGGACAATCAAACCATAA------TATGTATCATTTGTTTTCGACGG-AAC-GTTG--TGT-AGCACTTTAC-GATTATGTTATTCCCAGACCGGTTGCATCCCATTTAATGACA----TGTAACTG--T----------GACAAGTAAAC---------TTGCAAAGACAAAATGCAACTAT
gi|14 : CAACGGACAGTCAAAACATG---------TGTATCACATGTTTTCGACGGAAAACGTTA--TGT-TACACTTGTC-CACTCTGTTATTTCCAGACTGGTTACATGTCATTTGAGGACATAACTATAACGC--TGTACCATCTAGACAAGATAACTTACCAGTATTATATAGACAAAATGT
gi|15 : TTACTGATCTCATATAC-AA-TCGATTACAATT-------GA------A-AAATG-AAATAA--AA----G-CAAT-T---AA------------TA
gi|2 : atataaactgttatctaataccttgctagaaaaaattgactatctgaacttgttaaacataatcatagctgtttaaaaaaaaaacaatttaccTCTTGTAAATTGCTAACTTCACAAAC-AA-GCGATTACAATTT-----AAA------AGAAATA-AAAT--------------A--T---AA---------------TTATTT--TAATTACATTGATGGCTAAAGG--TACTAAGATTTGTCCTAATGCATGAAGATAAAATTTGAAATTTAAAGGTCATTGTAACTCTGatattataattatt
gi|20 : tcagccagataatcatttactagtgtagccatactctattcaatgtctaagtgacattttttctttttaaagaagttatgtcaacataatttaatgtcagtcaaatacgtaccagatgtcgacttgattatgtgggctggcagaaccattatgtatacatttcttatttagtatacactgtacgttatgtgtgggaaatcaatgtatttatcaacgtgtgacagtttagatactgttacattctgaacaattaacaatgcatcttgctgaaatatcatggactaatattcgctgaggattccttataagtattttgctcgacatataataataactattatttaataaattgctagaaaactaaatatcggaacttgtaaaatatatctaatgacatacatgtatacatggctgttccattaaacatacactAGACATAATTCAAACGGACTTAAAGCTGACAACGGACAAACAAAACA-AA------TATTT-CCA-TTGTTTTCGACGCAAAT-GTTGATCGCAAATACTTGTC-CATTCTG
gi|21 : tGT-TACGCT--CCACATTCTGTTATTTCCATACTGGATACAT-----TTGAGGACA----TATAAATT--TGAACCAACTGTACAAGATAACT------TATTAGATAGACAGAATATAAC
gi|24 : TCCAACGGTTTTAAATCTGACAACGGACAATTAAAACATA-----------TATCGCT-------------AAG-GTTG--TGT-TAGACATGTC-CATTCCGTTATTTCCAGA
gi|3 : TTGCTGGACTCAATAACTAA-GCTATAACATTTT-----AAA------A-AAG-----------------------------A------------TGCTTTTTT--CTATTGAATTGATGAC-ACATATTTAAT-GTATTTGTCCAAATGCTTGAAAGTAGTATTTGGATTTAGAAGGTTGTAGTGACTTTG
gi|4 : ttcaccagatgcccattaactggtgtcccaatacttattccttatatgattgactttttttaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcaattatttcagaattttataattgtcatgcactataaaaccatatttatttatcaacgtgtgacagattaaatactgttacccattttttgctgtaaataattcattttgataaaatggtcgatgagaatttaatatttgttattatgcgtgagatataataataagtattaattaataactagttagaaaaatttaaatatcggtacttgtaaaacacacatttaatacaacaaacataactggtctatagaaacattggatagaactccccTGTAAATTGCTGACCTCAAAAAC-AA-GCGATTACAATTTTAAAAAAATATGATA-AAATA-AAATAA--AA----G-AAA--T---AAAAACAAATCTTATACTTATTT--CAGTT---TTGATGAC-TAAAATT-ACTATGATATGTCTCAATGCTTGAAGATATGATTTGGATTTTGAAGGTTGCTGTGACTCTG
gi|5 : ttaagtatggcagaactatttcacaatatgtaattatgtataaattttaaatttattatacaacgtgtgacaatttaaattttgttacatgtttgaacaatttacaaagaattttgatgaaatagtatggactcttatccgctggggattacacattagtattttgcatgagatataagaataactgttatttaataacttgctagaaaactttgaatatcagaacttgtaaaacacatatctaatattacataaatagctgttcaataaaaaaaatatatataaactccgTCTTATAAATTGATAACCTGACAAAT-AAAGCGATTAAAATT------AAA------A-AAATATAAATAA--AA----G-AGA--CCTAAA------------TACTCATTT--CAGTTAAACTGATGAC-AAGCAGT--CTAGGACTTGTCCTCGTGCTTGAAAATAGTATTTGGACTTAGAAGGAAGAAGTCAGTCTACAGTTTTTC-ACATGAAACGTGGAACACTCCTCATATCAGTTTCATGATTCCAAGAAAGCAGAAATAATAATAACACTGAAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATTTTTATGTATCACTTGTTTTCGAAGGAACG-GTTG--TGT-AACACTTGAC-GATTCTGTAATTCCCAGACTGGTAACATCCCATTTGATGACA----TGTAACCT--TGAACCGACTAGACAAGTTAACT------CATTGCAAAGACAGAATGTAACTATt
gi|6 : cAACA-AAATGAGCAACAGCG-AAACCT---GA------------TACTTTTTTTTCAATTCAATTGATGAC-AAACATTTACTGGGATGTGTCATAGTGCTTGAA-ATAATATTTGAATTTTGAAGGTTATAGTAACTCTGC----TCTC--CAT
gi|6 : taaaatgttgtGAAAGATAAATTTCCAACGGTTTTA--TCTGACAACGGACAATAAAAGCATA-----------TATCACTTGTTTTCGGCGCCAAT-GCTG--TGT-------TGTC-CATTCGGTTATTTCCAGACTGGTTAAATGCCATTTTATGACA----AATAGTTTTGTGTACCAACTAGGCAAGATAATT------TATAACATAGAAAAAA-GTAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaagataaatttccaacggttttatctgacaacggacaataaaagcatatatcacttgttttcggcgccaatgctgtgttgtccattcggttatttccagactggttaaatgccattttatgacaaatagttttgtgtaccaactaggcaagataatttataacatagaaaaaagtaac
gi|8 : taaaatgttgtaacaaaatgagcaacagcgaaacctgatacttttttttcaattcaattgatgacaaacatttactgggatgtgtcatagtgcttgaaataatatttgaattttgaaggttatagtaactctgctctccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACTAGGATTTGTTCTAATGCTTAAAGATAATA-TTGGAGTTTGAAGGTTGTTGTAACGCTGT----CCTC--CATAA
gi|8 : gtaatttaacagaaataagcatatcagagtttttttaaATAACACTTGCAAGACAACATTCCAACAGTGTTATATGTGACAATGAACAATCAAAACATA---------CATAACACTTGTTTTCGACGCAAAG-GTTG--TGT-TACACTTGTC-CATTCTGTTATTTCCAGACTGGTTACATGTCATTTAA-AACA----TATAACTT--TGTACCAACTAGACAAGATAACT------TATTACATTGA-AAAAGGTgcaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacttgcaagacaacattccaacagtgttatatgtgacaatgaacaatcaaaacatacataacacttgttttcgacgcaaaggttgtgttacacttgtccattctgttatttccagactggttacatgtcatttaaaacatataactttgtaccaactagacaagataacttattacattgaaaaaggt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTGAATAAAATTAATTAGTTTAAACTAAATATCGACCAAATGCCGTTTTAATGAATGGTTATATGGATTTCGGCAGGCAGAACTATTTCACCATACATGTTTATGTACAAATTTTAATTTTATTGTGCACTATATGCTATTTCTAGAAAACCAGATTATTAATCAATGTATTTTGTATCAATGGTTTACACACTGTTTTCCATTTTGAACGGTAAAAAATGCATATTGATGAAATAGTAAGAGCTACTAACAGGCTGTTAACCATTAATATTTTGCGTAAGATATATTGATAATTATTATTTAATAACTTGGGAGAAAACGTTAAATATCGGTACTTGTAAAACACATATCTTATACCACATACAAAGCTGGTCTATGAAAACATATAATAAAACAGTCCTCATAAATTGCTGACCCTTTGACACAC
Unaligned ( gi|9 ): CTTACTGATGTTGACATAATTCATTCAATACATAAGTGACTTTTTAAAGAACGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACAATTATGAATACATTATAAATTTATTACACATTATACGTTATTTCTGGATTCCAGATATATTTATAAACGTGAGACAGTGTAAAAACTGTTACATGCTGAGCAGTTAACAGTGCCTTTTGATGAAATAGTATGGACTTTTATGCACTGAGAATTATACTTTATTGTTTTGCGTGAGTAATAATAATAATATCATTTAACAACTTGCTAG
Unaligned ( gi|10 ): TAACATATAAGTGTCTTTTTGAATTTATTATGCACTATTATGTTATATCTAAAAAACAGATTCATTGATCAACGTGTAGCAGTTTAAATATATTTACCGATTTTGAGCGGTTAAAAATGCATTTTGATGAAATAGCTACTATTAGCTGCTGTTCCACGGGGATGGAGATTAAAGATAAGTGTTTTGCGTACAATATAACAATAACTATTGATTAATGTATTTTCTAGAACAGTTTAAATATTGATA
Unaligned ( gi|16 ): ACAATTTGTATACATTTTATAAACTGATTATTCACTGCGCGTTATTTCTTGAAAACTTGATTCATTTTAACGTGTGACAGTTCATAACATTTTGAGCAATTAACAAAATATTTTATGAAATAGTATTATTTTTACATTGAAAAATAGAACTTTGTGTT
Unaligned ( gi|17 ): TATTGGAGATTCGGACTATTTATCGAATTGTAACAGTTTAAATATCGTCATCTGCTAGAGTGATTAACAGTTCATTTTGATGTAATACTAAGAACTGTTACCCGCTCGCATATGGGTATTTAACATCGGTGTTTTTCATGAAGTA
Unaligned ( gi|18 ): GGAAAGACATAATTCCAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTTATACATTGTTTTCGACGCAAAGGTTGTGTTACGCTACCCCATTCTGCTAGTTCCAGGCTGGTTAAACGTCATTTA
Unaligned ( gi|19 ): TATATATTTGACAATCTACATTATTTCTATATCAGAAAATTAATTTATTGATAAAAGTGAGATGGTATATATACTGTTACCCAATAGAGTTGTTAACAGTGCATGTCGGCAAAACAGTAAGAAC
Unaligned ( gi|22 ): GTTACCAACTAGAGTGATTAACAGTACATTTTCATGAAAACTTTTATCAACAGGCCTTTGAGGATTTAACAGAAGTGTTTCCAGGAGGTA
Unaligned ( gi|23 ): TTGAGGGTACATTTTGATGAAATAGTAATGCCCGGTGGCTTATGGGAAGTGTTTTACGTGAGATATAATAATGCTTTAGTGTAGTTCTA
Unaligned ( gi|25 ): TACATTTTGATGAAATAGTTAAGAACTGCTGCAGTTTGGGAATTAAACATTTGTGTTTTACGCGTGCTATAATAATAA
Unaligned ( gi|26 ): TTTATTTTGCATGATACGTCAGTTCATTTGCTGGATCCCAGATATCTTTATAAACATGTGACAGTTTAA