lowQualScore : 1111 222222222222 22222222 22
lowQualScore : 5555 1 6 8 7 2 2 33 0 2 5 2 88 2 2 3 0 55 5555 5555 2 2 7 2 33 444 2 33 000000000000 1 4 2 33 2 333 44 2 2 22 4444 3 22 2 333 2 22 22222222 2 1 6 11 2 2 0
lowQualScore : .... . . . . . . .. . . . . .. . . . . .. .... .... . . . . .. ... . .. ............ . . . .. . ... .. . . .. .... . .. . ... . .. ........ . . . .. . . .
lowQualScore : 7777 1 0 8 1 4 4 44 2 6 1 5 44 5 5 8 6 99 4444 2222 2 2 6 3 11 888 2 22 000000000000 1 2 1 99 0 555 88 1 0 88 2222 2 99 1 777 1 22 99999999 1 9 6 99 5 4 2
consensus : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT--TT-A-TCGGGGCCCTTGG--CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACACAT-T--T----TAGCGTTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATAAT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
Reference ( gi|6 ) : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGACCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT--TT-A-TCGGGGCTCTTGG--CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TGGCGTTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATAAC-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|5 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGCTCGAACCATTCAG-CGACCGGCTT--TT-A-TCGGGGCTCTTGG--CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TGGCGTTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATAAT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|7 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAATCATTCAG-CGACCGGCTT--TT-A-TCGGGGCTCTTGG--CC-CT-A-T--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TAGCGTTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATAAT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|8 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACATTCCCGATCGAACCACTCAG-CGACCGGCTT--TT-A-TTATGGCTTTTGG--CC-CT-A-C--G-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACACAT-T--T----AAGCGTTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATAAT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|13 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT--TT-A-TCGGGGCTCTTGG--CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TGGCGT
gi|10 : aTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCGGAA-T-GAGCG--TTTCATTCCCGATTGAACCATTCAG-CGACCAGCTT--TC-A-TTAGGGCCTTTGG--TC-AA-A-CTGA-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AA-------TAAACATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTT---TT--ACACACAT-C--T----TAACGTTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGAT
gi|25 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCACTCAG-CGACCGGCTT--TT-A-TTGGGGCTTTTGG--CC-CT-A-T--G-TGTGTGA
gi|15 : TGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT--TC-A-TTAGGGCCTTTGG--TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|14 : TGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT--TC-A-TTAGGGCCTTTGG--TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|9 : TGCCCTGAGCTT----AAAGCCGAAAACGGATAGAAATCTAGCCAATCGGAA-T-AAG
gi|20 : aGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCATTCAG-CGACCGGCTT--TT-A-TTGGGGCTTTTGG--CC-CG-A-T--G-TGT-TGAACTAGGG--A--GG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcatacctagtaatatatgtgttttacacacattttagcgttttttacatgtttatatcaatatataatgatta
gi|4 : TCCTGAGCTC----GAA-----AAACAGATTGAAATCTAGCCAAT-GAAA-T-T-GCGTCTTACAATTAATGTAAGGCCAAT-AGCCAACCGGCTT--AT-A-TCTCGGTCATTGA--CTATT-G-T--A-TGT-TGAGCTGGGG--AATGGTAGAACAGTA-T-AT-------TAAATA-AAAAACAA------TGTATTTA-GTA-A---AT----TA---TT--GT-TGTTT-T--T----TACTGTTT--TT-T---G---TGTTTGTG-C------------TTTACA-----CACAAG-TCTC-AATTATTATAAAAA
gi|1 : gacatgcctctactgtggtctgcgcctcgggagatagacaaaaatTCTTGAGCTT----GAA-TCGAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCC--TTACAATTTATGTAGGGCCGATAGG-AAACTGGCTTACTT-C-CCGA---TCCTGGATCA-TT-G-T--A-TGT-TGAGCTCGGGAAA--GG-AGG--AATAGT-ATAA-----TGAATAAAAA----AACA-TTCAT------GTA-ATAGTT-AAACA---TT--GT---TAT-T--TCTACTGGAATTT--TT-T---TTAGTGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATAA----TT-AATAgaaattctatatggtattaacatagattaagttgaatattggat
gi|2 : tgcatgtctccactgtggtccgcgcttcgagagagagaaaaaaacaacCTTGAGCTT----GAATCGAAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCA--TTACAATTTATGTAGAGCCATTAGG-AAACCGGCTTA-TT-ACTC--GGTCCTCGA--TC-ATAA-T--G-TGT-TGAGCTGGGG--A--TA-AGG--TAGAAC-AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACG---TT--GT---TGTCT--T----TATTGTTT--TT-TTTGGTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATAA----TT-AATAtaatatggaacttcacatgttattattataccgtagtttaagttaacattaga
gi|3 : acatgtcgacactgtggtccgcgcctcgagaggtaaaaaaaacaaaaacaGAGCTT----GAATCAAAAAACGAATTAAAATCCAGCCAAT-GAAA-TTGCACA--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTTA-TT-A-CCCGG--TCTTGGA-TC-ATAA-A--G-TGT-TGAGCTGGGG--A--AA-AGT--AGAAC--AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACG---TT--GT-TGTCT-TTAT----TGTTTTTT--TT-T---GTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATAA----TT-AATAcaatatggaactccacatattattagtatactgtaatcta
gi|12 : catgtccacacagtggtccgcgcctcgagaggaaaaaaaccaaaacactcGAGCTTGAATAAAA---AAAACGGATTGAAATCCAGCCAAT-GAAATT-GCTCC--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTT--AT-T-TCCCGGTCCTGGA--TC-AT-AGT--G-TGT-TGAGCTGGGG--A---A-AGG--TGGAAC-AG-------TATA-ATGAATAtaatatggaattccacatattattagtatactgtagtctaa
gi|30 : catgtttacactgtggtccgcgccttgagaggaaaaaaaccaaaacaatgAAAACGGATTGAAATCTGGCCAAT-GAAA-T-G-GCG--Taatcaaagtactgtcagtaatcat
gi|11 : catgtctccactgtggaccatgcttcaagagatagacaaaaactatggaatcgaA-T-GAGTG--TATCATTTCTGATTGAACCAATCAG-AGACCGGTTT--TC-A-TTAGGGC-CTTGG--TC-CG-C-T--GATGT-TGATCTGAGG--A--GG-ATA--TGTAAT-CA-------TAAATATAGACATGAAAGCCTT-TACTTA-ATATAT---T-ATGTGTTTTT--ATACACAT-T--T----CAGCGTTTTATC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATAACAT-CT-TATAATCATTGAAAAAGTAACGTAGATCTAGTTGAct
gi|31 : gtTCAG-AGACCGGTTT--TTCA-TTAGAGCCTTTGG--CC-CA-A-CTGA-TGT-TGATCTGGGG--A--TG-ATA--TGTAAT-CA-------TAAATATAAACATGA
gi|16 : T-A-T--G-TGT-TGATCTGAGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TAACGTTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATAGT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGAg
gi|24 : -TGT-TGATCTGGGG--A--AG-AGA--TGTACT-AA-------TAAATATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTT---TT--ACACACAT-C--T----TAGGGTTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGA
gi|17 : aAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TAGCGTTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAATGATTATAGT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|19 : AAATATACGTATGAGCGTTTTATAAATA-GGT-ATATATTGTGTA---TTT-ATACACAC-C--T----ATGCGTTG--TT-----ACA-TGTATATA-GT--------A-AAAGATAATGATTATATT-T-TTTAATAATCAATAAAATAGTAACGCAGATCATGTTGA
gi|22 : TTTATACCTA-GTA-ATTTTT-GTGTT---TT--ACACACAT-C--T----TAGCGTTT--TC-T---ACA-TGTTTATACCT--------ATATATAAAATGATTGTAATAT-CT-AATAATCATTTAAATAGTAACGTAGATCATTTTGA
gi|28 : aTTATATCTA-ATA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TAGCGTTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATAGT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|27 : TTATATCTA-ATA-ATGGAT-ATGTA---TT--ATACATAT-T--T----TAGCGTTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATAGT-T-TT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|9 : TCATACCTA-GTA-ATATAT-GTGTT---TT--ACACACAT-T--T----TAGCGTTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATTA
gi|26 : atgccctgagcttaaagccgaaaacggatagaaatctagccaatcggaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacTATACCTA-GTA-ATTTAT-GTGTT---TT--ATTCACAT-C--T----TAGCATTT--TTCT---ACA-TGTTTATA-TT--------A-ATATAAACTGATTATAATAT-CT-AATAATCATTTAAATAGTAACGTAGATCATGTTGA
gi|29 : T-ATGTA---TTTTACACACAT-C--T----TAGCGTTT--TC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATAATAT-TT-AATAATCATTTAAATAGAAACGTAGAATATGTTGA
gi|33 : tt-AATAATCATTAAAATAGTAACGTATATCATGTTGA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TAAAAAACAATGTTTTAGTAAATCATTGGTATTTTTACTGATTTTTTTTGTATTTGTGCTTTTAACACAAGTTTCAATTAATATAATTAATTTAATATGGAATTCCACATGTAATAATTATAGTTTAAGTTGAATATTGGAT
Unaligned ( gi|21 ): ATTGTTATTTCTACTGGATTTTTTGTGTGTTTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATAATTATACCGTAGTTCAAGTTGAACATT
Unaligned ( gi|23 ): ATTGTTATTTCTACTAGATCTTTTGTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATTATTATACCATAGTTTAAGTTGAACATT
Unaligned ( gi|32 ): AATATGGAACTCCACATGTTATTATTATACCGTAGTTTAAGTTGAACATT
Alignments
lowQualScore : 111111111 11111111 22222222
lowQualScore : 5555 0 7 6 2 1 33 1 1 2 4 2 2 4 1 2 444444444 2 2 1 22 444 2 33 3 4 88888888 0 4 2 2 1 777 1 3 4444 333 22 2 333 2 2 11111111 2 1 33 999 2
lowQualScore : .... . . . . . .. . . . . . . . . . ......... . . . .. ... . .. . . ........ . . . . . ... . . .... ... .. . ... . . ........ . . .. ... .
lowQualScore : 3333 4 6 7 2 8 22 8 0 4 7 4 4 5 0 4 222222222 1 1 0 99 111 1 11 2 4 33333333 6 0 0 8 9 999 6 8 0000 333 88 0 555 0 0 88888888 0 4 22 999 2
consensus : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
Reference ( family-2073 ) : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|1 : TCTTGAGCTT----GAA-TCGAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCC--TTACAATTTATGTAGGGCCGATAGG-AAACTGGCTT-AC-T-TCCCGATCCTGGA-TCATT-G-T--A-TGT-TGAGCTCGGGAAA--GG-AGG--AATAGT-ATAA-----TGAATAAAAA----AACA-TTCAT------GTA-ATAGTT-AAACATT---GT---TAT-TTCTACTGGAA---TTT--TT-T---TTAGTGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|10 : tgcatgtctccactgtggtccgcgcttcgagagagagaaaaaaacaacTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCGGAA-T-GAGCG--TTTCATTCCCGATTGAACCATTCAG-CGACCAGCTT-TC-A-TTAGGGCCTTTGG-TC-AA-A-CTGA-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AA-------TAAACATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAACG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATtaatatggaacttcacatgttattattataccgtagtttaagttaacattaga
gi|11 : A-T-GAGTG--TATCATTTCTGATTGAACCAATCAG-AGACCGGTTT-TC-A-TTAGGGCC-TTGG-TC-CG-C-T--GATGT-TGATCTGAGG--A--GG-ATA--TGTAAT-CA-------TAAATATAGACATGAAAGCCTT-TACTTA-ATATAT---T-ATGTGTTTTTATACACAT-TT----CAGCG---TTTTATC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATAACA-T-CTT--ATAATCATTGAAAAAGTAACGTAGATCTAGTTGA
gi|12 : gtGAGCTTGAATAAAA---AAAACGGATTGAAATCCAGCCAAT-GAAATT-GCTCC--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTT-AT-T-TCCCGGTCCTGGA-TC-AT-AGT--G-TGT-TGAGCTGGGG--A---A-AGG--TGGAAC-AG-------TATA-ATGAATA
gi|13 : catgtttacactgtggtccgcgccttgagaggaaaaaaaccaaaacaatgTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---Taatcaaagtactgtcagtaatcat
gi|14 : aTGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|15 : TGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|16 : T-A-T--G-TGT-TGATCTGAGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAACG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|17 : GGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|19 : aAAATATACGTATGAGCGTTTTATAAATA-GGT-ATATATTGTGTATTT--ATACACAC-CT----ATGCG---TTG--TT-----ACA-TGTATATA-GT--------A-AAAGATAATGATTATA--T-T-TTTTAATAATCAATAAAATAGTAACGCAGATCATGTTGA
gi|2 : CTTGAGCTT----GAATCGAAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCA--TTACAATTTATGTAGAGCCATTAGG-AAACCGGCTTATT-ACTC--GGTCCTCGA-TC-ATAA-T--G-TGT-TGAGCTGGGG--A--TA-AGG--TAGAAC-AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTG---TTT--TT-TTTGGTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|20 : acatgtcgacactgtggtccgcgcctcgagaggtaaaaaaaacaaaaacaGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCATTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CG-A-T--G-TGT-TGAACTAGGG--A--GG-caatatggaactccacatattattagtatactgtaatcta
gi|22 : TTTATACCTA-GTA-ATTTTT-GTGTTTT---ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATACCT--------ATATATAAAATGATTGTA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATTTTGA
gi|24 : a-TGT-TGATCTGGGG--A--AG-AGA--TGTACT-AA-------TAAATATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAGGG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGA
gi|25 : aTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CT-A-T--G-TGTGTGA
gi|26 : TATACCTA-GTA-ATTTAT-GTGTTTT---ATTCACAT-CT----TAGCA---TTT--TTCT---ACA-TGTTTATA-TT--------A-ATATAAACTGATTATA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATGTTGA
gi|27 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|28 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|29 : T-ATGTATTTT-ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATA--A-TATTT-AATAATCATTTAAATAGAAACGTAGAATATGTTGA
gi|3 : ttGAGCTT----GAATCAAAAAACGAATTAAAATCCAGCCAAT-GAAA-TTGCACA--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTTATT-A-CCCGG--TCTTGGATC-ATAA-A--G-TGT-TGAGCTGGGG--A--AA-AG---TAGAAC-AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTGTTTTTT--TT-T---GTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|30 : catgtccacacagtggtccgcgcctcgagaggaaaaaaaccaaaacactcAAAACGGATTGAAATCTGGCCAAT-GAAA-T-G-GCG--Ttaatatggaattccacatattattagtatactgtagtctaa
gi|31 : catgtctccactgtggaccatgcttcaagagatagacaaaaactatggaatcgaTCAG-AGACCGGTTT-TTCA-TTAGAGCCTTTGG-CC-CA-A-CTGA-TGT-TGATCTGGGG--A--TG-ATA--TGTAAT-CA-------TAAATATAAACATGAct
gi|33 : -AATAATCATTAAAATAGTAACGTATATCATGTTGAg
gi|4 : TCCTGAGCTC----GAA-----AAACAGATTGAAATCTAGCCAAT-GAAA-T-T-GCGTCTTACAATTAATGTAAGGCCAAT-AGCCAACCGGCTT-AT-A-TCTCGGTCATTGA-CTATT-G-T--A-TGT-TGAGCTGGGG--AATGGTAGAACAGTA-T-AT-------TAAATA-AAAAACAA------TGTATTTA-GTA-A---AT----TATT---GT-TGTTT-TT----TACTG---TTT--TT-T---G---TGTTTGTG-C------------TTTACA-----CACA--AGT-CTC-AATTATTATAAAAAt
gi|5 : gacatgcctctactgtggtctgcgcctcgggagatagacaaaaatTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGCTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGAgaaattctatatggtattaacatagattaagttgaatattggat
gi|6 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGACCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-C-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|7 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAATCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-T--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|8 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACATTCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTATGGCTTTTGG-CC-CT-A-C--G-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----AAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|9 : TGCCCTGAGCTT----AAAGCCGAAAACGGATAGAAATCTAGCCAATCGGAA-T-AAG
gi|9 : aTCATACCTA-GTA-ATATAT-GTGTTTT---ACACACAT-TT----TAGCG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcatacctagtaatatatgtgttttacacacattttagcgttttttacatgtttatatcaatatataatgatta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAAAAAACAATGTTTTAGTAAATCATTGGTATTTTTACTGATTTTTTTTGTATTTGTGCTTTTAACACAAGTTTCAATTAATATAATTAATTTAATATGGAATTCCACATGTAATAATTATAGTTTAAGTTGAATATTGGAT
Unaligned ( gi|21 ): ATTGTTATTTCTACTGGATTTTTTGTGTGTTTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATAATTATACCGTAGTTCAAGTTGAACATT
Unaligned ( gi|23 ): ATTGTTATTTCTACTAGATCTTTTGTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATTATTATACCATAGTTTAAGTTGAACATT
Unaligned ( gi|32 ): AATATGGAACTCCACATGTTATTATTATACCGTAGTTTAAGTTGAACATT
Alignments
lowQualScore : 111111111 11111111 22222222
lowQualScore : 5555 0 7 6 2 1 33 1 1 2 4 2 2 4 1 2 444444444 2 2 1 22 444 2 33 3 4 88888888 0 4 2 2 1 777 1 3 4444 333 22 2 333 2 2 11111111 2 1 33 999 2
lowQualScore : .... . . . . . .. . . . . . . . . . ......... . . . .. ... . .. . . ........ . . . . . ... . . .... ... .. . ... . . ........ . . .. ... .
lowQualScore : 3333 4 6 7 2 8 22 8 0 4 7 4 4 5 0 4 222222222 1 1 0 99 111 1 11 2 4 33333333 6 0 0 8 9 999 6 8 0000 333 88 0 555 0 0 88888888 0 4 22 999 2
consensus : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
Reference ( family-2073 ) : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|1 : TCTTGAGCTT----GAA-TCGAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCC--TTACAATTTATGTAGGGCCGATAGG-AAACTGGCTT-AC-T-TCCCGATCCTGGA-TCATT-G-T--A-TGT-TGAGCTCGGGAAA--GG-AGG--AATAGT-ATAA-----TGAATAAAAA----AACA-TTCAT------GTA-ATAGTT-AAACATT---GT---TAT-TTCTACTGGAA---TTT--TT-T---TTAGTGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|10 : tgcatgtctccactgtggtccgcgcttcgagagagagaaaaaaacaacTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCGGAA-T-GAGCG--TTTCATTCCCGATTGAACCATTCAG-CGACCAGCTT-TC-A-TTAGGGCCTTTGG-TC-AA-A-CTGA-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AA-------TAAACATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAACG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATtaatatggaacttcacatgttattattataccgtagtttaagttaacattaga
gi|11 : A-T-GAGTG--TATCATTTCTGATTGAACCAATCAG-AGACCGGTTT-TC-A-TTAGGGCC-TTGG-TC-CG-C-T--GATGT-TGATCTGAGG--A--GG-ATA--TGTAAT-CA-------TAAATATAGACATGAAAGCCTT-TACTTA-ATATAT---T-ATGTGTTTTTATACACAT-TT----CAGCG---TTTTATC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATAACA-T-CTT--ATAATCATTGAAAAAGTAACGTAGATCTAGTTGA
gi|12 : gtGAGCTTGAATAAAA---AAAACGGATTGAAATCCAGCCAAT-GAAATT-GCTCC--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTT-AT-T-TCCCGGTCCTGGA-TC-AT-AGT--G-TGT-TGAGCTGGGG--A---A-AGG--TGGAAC-AG-------TATA-ATGAATA
gi|13 : catgtttacactgtggtccgcgccttgagaggaaaaaaaccaaaacaatgTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---Taatcaaagtactgtcagtaatcat
gi|14 : aTGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|15 : TGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGG--A--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGCTT
gi|16 : T-A-T--G-TGT-TGATCTGAGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAACG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|17 : GGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|19 : aAAATATACGTATGAGCGTTTTATAAATA-GGT-ATATATTGTGTATTT--ATACACAC-CT----ATGCG---TTG--TT-----ACA-TGTATATA-GT--------A-AAAGATAATGATTATA--T-T-TTTTAATAATCAATAAAATAGTAACGCAGATCATGTTGA
gi|2 : CTTGAGCTT----GAATCGAAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCA--TTACAATTTATGTAGAGCCATTAGG-AAACCGGCTTATT-ACTC--GGTCCTCGA-TC-ATAA-T--G-TGT-TGAGCTGGGG--A--TA-AGG--TAGAAC-AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTG---TTT--TT-TTTGGTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|20 : acatgtcgacactgtggtccgcgcctcgagaggtaaaaaaaacaaaaacaGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCATTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CG-A-T--G-TGT-TGAACTAGGG--A--GG-caatatggaactccacatattattagtatactgtaatcta
gi|22 : TTTATACCTA-GTA-ATTTTT-GTGTTTT---ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATACCT--------ATATATAAAATGATTGTA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATTTTGA
gi|24 : a-TGT-TGATCTGGGG--A--AG-AGA--TGTACT-AA-------TAAATATGGACATGAACGCTTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAGGG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGA
gi|25 : aTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CT-A-T--G-TGTGTGA
gi|26 : TATACCTA-GTA-ATTTAT-GTGTTTT---ATTCACAT-CT----TAGCA---TTT--TTCT---ACA-TGTTTATA-TT--------A-ATATAAACTGATTATA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATGTTGA
gi|27 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|28 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|29 : T-ATGTATTTT-ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATA--A-TATTT-AATAATCATTTAAATAGAAACGTAGAATATGTTGA
gi|3 : ttGAGCTT----GAATCAAAAAACGAATTAAAATCCAGCCAAT-GAAA-TTGCACA--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTTATT-A-CCCGG--TCTTGGATC-ATAA-A--G-TGT-TGAGCTGGGG--A--AA-AG---TAGAAC-AG-------TATA-ATGAATAAAAA------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTGTTTTTT--TT-T---GTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|30 : catgtccacacagtggtccgcgcctcgagaggaaaaaaaccaaaacactcAAAACGGATTGAAATCTGGCCAAT-GAAA-T-G-GCG--Ttaatatggaattccacatattattagtatactgtagtctaa
gi|31 : catgtctccactgtggaccatgcttcaagagatagacaaaaactatggaatcgaTCAG-AGACCGGTTT-TTCA-TTAGAGCCTTTGG-CC-CA-A-CTGA-TGT-TGATCTGGGG--A--TG-ATA--TGTAAT-CA-------TAAATATAAACATGAct
gi|33 : -AATAATCATTAAAATAGTAACGTATATCATGTTGAg
gi|4 : TCCTGAGCTC----GAA-----AAACAGATTGAAATCTAGCCAAT-GAAA-T-T-GCGTCTTACAATTAATGTAAGGCCAAT-AGCCAACCGGCTT-AT-A-TCTCGGTCATTGA-CTATT-G-T--A-TGT-TGAGCTGGGG--AATGGTAGAACAGTA-T-AT-------TAAATA-AAAAACAA------TGTATTTA-GTA-A---AT----TATT---GT-TGTTT-TT----TACTG---TTT--TT-T---G---TGTTTGTG-C------------TTTACA-----CACA--AGT-CTC-AATTATTATAAAAAt
gi|5 : gacatgcctctactgtggtctgcgcctcgggagatagacaaaaatTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGCTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGAgaaattctatatggtattaacatagattaagttgaatattggat
gi|6 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGACCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGG--A--GG-AGA--TGTACT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-C-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|7 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAATCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-T--G-TGT-TGAACTAGGG--A--GG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|8 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACATTCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTATGGCTTTTGG-CC-CT-A-C--G-TGT-TGATCTGGGG--A--AG-AGA--TGTATT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----AAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|9 : TGCCCTGAGCTT----AAAGCCGAAAACGGATAGAAATCTAGCCAATCGGAA-T-AAG
gi|9 : aTCATACCTA-GTA-ATATAT-GTGTTTT---ACACACAT-TT----TAGCG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcatacctagtaatatatgtgttttacacacattttagcgttttttacatgtttatatcaatatataatgatta
blockSeqs : GAAT C T T A TC T T C A C C A T A AAACTG A G T . ATG T AC T C TAAATTCA C T T T TTT A C . TTT TA C TTG . C TTAAACAC T A AC TA T
blockSeqs : . C T . A . T A . A . . A C . CAACTA . . T . A . . A C TAAATTCA C . G . TT A C . . . . . . . TTAAACAC . A . TA .
blockSeqs : . C . . C . A A . . . . C C . CAACTA . . G . G . . A . A . . G . T A . . . . . . . . . . T . TA .
blockSeqs : . C . . A . C T . . . . G T . CAACTG . . A . G . . C . A . . G . . A . . . . . . . . . . T . GT .
blockSeqs : . C . . A . T A . . . . A T . ATAGT . . T . A . . C . G . . A . . A . . . . . . . . . . A . T .
blockSeqs : . C . . A . T A . . . . A C . ATAAT . . T . A . . C . T . . A . . A . . . . . . . . . . T . T .
blockSeqs : . C . . C . A T . . . . G T . ATAAA . . T . A . . T . T . . T . . A . . . . . . . . . . A . T .
blockSeqs : . C . . A . C T . . . . G T . ATTGT . . G . G . . T . T . . T . . A . . . . . . . . . . A . T .
blockSeqs : . C . . A . C C . . . . C C . CGCT . . A . T . . A . G . . T . . T . . . . . . . . . . A . T .
blockSeqs : . C . . C . A A . . . . A T . CTAC . . T . G . . C . A . . G . . A . . . . . . . . . . T . T .
blockSeqs : . C . . A . A A . . . . T A . CGAT . . G . A . . A . G . . G . . A . . . . . . . . . . T . T .
blockSeqs : . . . . A . C T . . . . G C . CTAT . . T . A . . A . A . . A . . A . . . . . . . . . . A . C .
blockSeqs : . . . . A . C T . . . . G C . CTAC . . G . T . . T . T . . G . . A . . . . . . . . . . T . T .
blockSeqs : . . . . A . C T . . . . G C . CTAC . . A . G . . C . T . . G . . A . . . . . . . . . . T . T .
blockSeqs : . . . . A . C C . . . . A T . CTAT . . A . G . . T . T . . G . . A . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . CTAC . . A . G . . T . T . . G . . A . . . . . . . . . . T . . .
blockSeqs : . . . . . T . A . . . . T . . A . . A . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . .
blockSeqCons : CTAC***** ** N******* **** ******** T**
originalCons : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AT-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
finalCons : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CCCTAC-----G-TGT-TGANCTGGGG--A--GG-AGA--TGTANT-AN-------TAAATATGAACATGAACGCTTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--AT--TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAAAAAACAATGTTTTAGTAAATCATTGGTATTTTTACTGATTTTTTTTGTATTTGTGCTTTTAACACAAGTTTCAATTAATATAATTAATTTAATATGGAATTCCACATGTAATAATTATAGTTTAAGTTGAATATTGGAT
Unaligned ( gi|21 ): ATTGTTATTTCTACTGGATTTTTTGTGTGTTTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATAATTATACCGTAGTTCAAGTTGAACATT
Unaligned ( gi|23 ): ATTGTTATTTCTACTAGATCTTTTGTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATTATTATACCATAGTTTAAGTTGAACATT
Unaligned ( gi|32 ): AATATGGAACTCCACATGTTATTATTATACCGTAGTTTAAGTTGAACATT
Alignments
lowQualScore : 111111111 11111111 22222222
lowQualScore : 5555 0 7 6 2 1 33 1 1 2 4 2 2 4 1 2 444444444 2 2 1 444 2 33 3 4 55555555 2 0 2 0 4 2 2 1 777 1 3 4444 333 22 2 333 2 2 11111111 2 1 33 999 2
lowQualScore : .... . . . . . .. . . . . . . . . . ......... . . . ... . .. . . ........ . . . . . . . . ... . . .... ... .. . ... . . ........ . . .. ... .
lowQualScore : 3333 4 6 7 2 8 22 8 0 4 7 4 4 5 0 4 222222222 1 1 0 999 1 11 2 4 44444444 1 3 2 6 0 0 8 9 999 6 8 0000 333 88 0 555 0 0 88888888 0 4 22 999 2
consensus : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGGA--GG-AGA--TGTANT-A-------NTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
Reference ( family-2073 ) : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCANTCAG-CGACCGGCTT-TT-A-TCGGGGCCCTTGG-CC-CT-A-C--G-TGT-TGANCTGGGGA--GG-AGA--TGTANT-A-------NTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|1 : TCTTGAGCTT----GAA-TCGAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCC--TTACAATTTATGTAGGGCCGATAGG-AAACTGGCTT-AC-T-TCCCGATCCTGGA-TCATT-G-T--A-TGT-TGAGCTCGGGA--AA-GGA---GGAAT-A-------GTATA-ATGAATAAAAAAACATTCAT------GTA-ATAGTT-AAACATT---GT---TAT-TTCTACTGGAA---TTT--TT-T---TTAGTGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|10 : tgcatgtctccactgtggtccgcgcttcgagagagagaaaaaaacaacTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCGGAA-T-GAGCG--TTTCATTCCCGATTGAACCATTCAG-CGACCAGCTT-TC-A-TTAGGGCCTTTGG-TC-AA-A-CTGA-TGT-TGATCTGGGGA--AG-AGA--TGTATT-A-------ATAAACATGGACATGAACGC-TTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAACG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATtaatatggaacttcacatgttattattataccgtagtttaagttaacattaga
gi|11 : A-T-GAGTG--TATCATTTCTGATTGAACCAATCAG-AGACCGGTTT-TC-A-TTAGGGCC-TTGG-TC-CG-C-T--GATGT-TGATCTGAGGA--GG-ATA--TGTAAT-C-------ATAAATATAGACATGAAAGC-CTT-TACTTA-ATATAT---T-ATGTGTTTTTATACACAT-TT----CAGCG---TTTTATC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATAACA-T-CTT--ATAATCATTGAAAAAGTAACGTAGATCTAGTTGA
gi|12 : gtGAGCTTGAATAAAA---AAAACGGATTGAAATCCAGCCAAT-GAAATT-GCTCC--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTT-AT-T-TCCCGGTCCTGGA-TC-AT-AGT--G-TGT-TGAGCTGGGGA---A-AGG--TGGAAC-A-------GTATA-ATGAATA
gi|13 : catgtttacactgtggtccgcgccttgagaggaaaaaaaccaaaacaatgTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGGA--GG-AGA--TGTACT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---Taatcaaagtactgtcagtaatcat
gi|14 : aTGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGGA--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGC-TT
gi|15 : TGTTTTGAGCTT----AAAGCCGAAAACGGATTGAAATCTAGCCAATCAGAA-T-GAGCG--TTTCATTCCCGATTGAACCAATCAG-CGACCGGCTT-TC-A-TTAGGGCCTTTGG-TT-CA-A-CTAA-TGT-TGATCTGGGGA--AG-AGA--TGTACTCATAAATTCATAAATATAAATATGAACGC-TT
gi|16 : T-A-T--G-TGT-TGATCTGAGGA--AG-AGA--TGTATT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAACG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|17 : GGGA--GG-AGA--TGTATT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|19 : aAAATATACGTATGAGCGT-TTTATAAATA-GGT-ATATATTGTGTATTT--ATACACAC-CT----ATGCG---TTG--TT-----ACA-TGTATATA-GT--------A-AAAGATAATGATTATA--T-T-TTTTAATAATCAATAAAATAGTAACGCAGATCATGTTGA
gi|2 : CTTGAGCTT----GAATCGAAAAACGGATTGAAATCCAGCCAAT-GAAATT-GCGCA--TTACAATTTATGTAGAGCCATTAGG-AAACCGGCTTATT-ACTC--GGTCCTCGA-TC-ATAA-T--G-TGT-TGAGCTGGGGA--TA-AGG--TAGAAC-A-------GTATA-ATGAATAAAAA-------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTG---TTT--TT-TTTGGTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|20 : acatgtcgacactgtggtccgcgcctcgagaggtaaaaaaaacaaaaacaGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCATTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CG-A-T--G-TGT-TGAACTAGGGA--GG-caatatggaactccacatattattagtatactgtaatcta
gi|22 : -TTTATACCTA-GTA-ATTTTT-GTGTTTT---ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATACCT--------ATATATAAAATGATTGTA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATTTTGA
gi|24 : a-TGT-TGATCTGGGGA--AG-AGA--TGTACT-A-------ATAAATATGGACATGAACGC-TTTATACCTA-GTA-ATTTAT-GTGTTTT---ACACACAT-CT----TAGGG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGA
gi|25 : aTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTGGGGCTTTTGG-CC-CT-A-T--G-TGTGTGA
gi|26 : TATACCTA-GTA-ATTTAT-GTGTTTT---ATTCACAT-CT----TAGCA---TTT--TTCT---ACA-TGTTTATA-TT--------A-ATATAAACTGATTATA--A-TATCT-AATAATCATTTAAATAGTAACGTAGATCATGTTGA
gi|27 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|28 : TTATATCTA-ATA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--G-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|29 : T-ATGTATTTT-ACACACAT-CT----TAGCG---TTT--TC-T---ACA-TGTTTATA-TT--------A-ATATATAATGATTATA--A-TATTT-AATAATCATTTAAATAGAAACGTAGAATATGTTGA
gi|3 : ttGAGCTT----GAATCAAAAAACGAATTAAAATCCAGCCAAT-GAAA-TTGCACA--TTACAATTTATGTAGAGCCAATAGG-AAACCGGCTTATT-A-CCCGG--TCTTGGATC-ATAA-A--G-TGT-TGAGCTGGGGA--AA-AG---TAGAAC-A-------GTATA-ATGAATAAAAA-------ACAACTACGTA-ATAGTT-AAACGTT---GT---TGTCTT----TATTGTTTTTT--TT-T---GTG-TGTTTGTG-TTTTAAACACA-AGTTTCAATTAATATA--A----TT-AATA
gi|30 : catgtccacacagtggtccgcgcctcgagaggaaaaaaaccaaaacactcAAAACGGATTGAAATCTGGCCAAT-GAAA-T-G-GCG--Ttaatatggaattccacatattattagtatactgtagtctaa
gi|31 : catgtctccactgtggaccatgcttcaagagatagacaaaaactatggaatcgaTCAG-AGACCGGTTT-TTCA-TTAGAGCCTTTGG-CC-CA-A-CTGA-TGT-TGATCTGGGGA--TG-ATA--TGTAAT-C-------ATAAATATAAACATGAct
gi|33 : -AATAATCATTAAAATAGTAACGTATATCATGTTGAg
gi|4 : TCCTGAGCTC----GAA-----AAACAGATTGAAATCTAGCCAAT-GAAA-T-T-GCGTCTTACAATTAATGTAAGGCCAAT-AGCCAACCGGCTT-AT-A-TCTCGGTCATTGA-CTATT-G-T--A-TGT-TGAGCTGGGGAATGGTAGAACAGTA-T-A-------TTAAATA-AAAAACAA-------TGTATTTA-GTA-A---AT----TATT---GT-TGTTT-TT----TACTG---TTT--TT-T---G---TGTTTGTG-C------------TTTACA-----CACA--AGT-CTC-AATTATTATAAAAAt
gi|5 : gacatgcctctactgtggtctgcgcctcgggagatagacaaaaatTGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGCTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGGA--GG-AGA--TGTATT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGAgaaattctatatggtattaacatagattaagttgaatattggat
gi|6 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGACCAATCGGAA-T-GAGCG--TTACAATCCCGGTCGAACCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-C--G-TGT-TGAACTAGGGA--GG-AGA--TGTACT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TGGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-C-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|7 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACAATCCCGATCGAATCATTCAG-CGACCGGCTT-TT-A-TCGGGGCTCTTGG-CC-CT-A-T--G-TGT-TGAACTAGGGA--GG-AGA--TGTATT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACATAT-TT----TAGCG---TTT--TT-T---GCA-TGTTTATG-TT--------A-ATTTACAGTGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|8 : TGTCCTGAGCTT----AAAGCCGAAAACGGATTGAAATCTGGCCAATCGGAA-T-GAGCG--TTACATTCCCGATCGAACCACTCAG-CGACCGGCTT-TT-A-TTATGGCTTTTGG-CC-CT-A-C--G-TGT-TGATCTGGGGA--AG-AGA--TGTATT-A-------TTAAATATGAACATGAACGC-TTTATATCTA-GTA-ATGGAT-ATGTATT---ATACACAT-TT----AAGCG---TTT--TT-T---GCA-TGTTTATA-TT--------A-ATTTACAATGATTATA--A-T-TTT-AATAATCATTAAAATAGTAACGTATATCATGTTGA
gi|9 : TGCCCTGAGCTT----AAAGCCGAAAACGGATAGAAATCTAGCCAATCGGAA-T-AAG
gi|9 : aTCATACCTA-GTA-ATATAT-GTGTTTT---ACACACAT-TT----TAGCG---TTT--TT-T---ACA-TGTTTATA-TC--------A-ATATATAATGATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcatacctagtaatatatgtgttttacacacattttagcgttttttacatgtttatatcaatatataatgatta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAAAAAACAATGTTTTAGTAAATCATTGGTATTTTTACTGATTTTTTTTGTATTTGTGCTTTTAACACAAGTTTCAATTAATATAATTAATTTAATATGGAATTCCACATGTAATAATTATAGTTTAAGTTGAATATTGGAT
Unaligned ( gi|21 ): ATTGTTATTTCTACTGGATTTTTTGTGTGTTTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATAATTATACCGTAGTTCAAGTTGAACATT
Unaligned ( gi|23 ): ATTGTTATTTCTACTAGATCTTTTGTGTGTTTGTGTTTTAAACACAAGTTTCAATTAATATAATTGATAGAATTTGGAACTCCACATGTTATTATTATACCATAGTTTAAGTTGAACATT
Unaligned ( gi|32 ): AATATGGAACTCCACATGTTATTATTATACCGTAGTTTAAGTTGAACATT