lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111 2222222222222222222222222222222222 11111111111111111111111111111111
lowQualScore : 1 11 1111 111111 111 1 333333 1 44444444 333 333 4444444444444444444444444444444444444444444444444444444444444444 22 22222 555555555555555555555555555 1 4 55 999999 1 1 33 1 6666666666666666666666666666666666 1 333 22 1 33 1 11 333 00000000000000000000000000000000 1 2 1 44444444444 2 333333
lowQualScore : 33 4 6 3 00 4444 888888 88 3 000 555555 3 1 6 5 000000 4 7 3 3 4 3 33333333 3 4 4 3 6 4 2 3 4 2 4 555 3 555 3 4 6 3 3 4 2222222222222222222222222222222222222222222222222222222222222222 66 77777 4 66 6 77 6 2 66 2 6 6 111111111111111111111111111 5 0 6 55 6 000000 5 5 6 6 6 00 5 8888888888888888888888888888888888 7 6 6 666 6 4 6 44 4 5 6 00 5 77 555 4 2 22222222222222222222222222222222 5 0 2 6 4 4 55 55 3 7 55555555555 2 0 777777 3
lowQualScore : .. . . . .. .... ...... .. . ... ...... . . . . ...... . . . . . . ........ . . . . . . . . . . . ... . ... . . . . . . ................................................................ .. ..... . .. . .. . . .. . . . ........................... . . . .. . ...... . . . . . .. . .................................. . . . ... . . . .. . . . .. . .. ... . . ................................ . . . . . . .. .. . . ........... . . ...... .
lowQualScore : 77 9 6 0 55 6666 888888 99 6 000 999999 5 0 0 5 000000 0 0 0 0 0 0 55555555 0 0 0 0 0 0 5 0 0 5 0 000 0 000 0 0 0 0 0 0 5555555555555555555555555555555555555555555555555555555555555555 00 00000 0 55 0 00 0 5 55 5 0 0 000000000000000000000000000 0 0 0 00 0 000000 0 0 0 0 0 00 0 0000000000000000000000000000000000 0 0 0 000 0 0 0 00 0 0 0 55 5 55 000 0 5 55555555555555555555555555555555 0 0 5 0 0 0 55 00 0 0 55555555555 5 0 000000 0
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGATAACAC---G--ATGATTATGACA---CGACAGTATCCCGGTGGCCCTAACGGAACACCGTAATACATCCGGCTTTATGTCGTGTTTTTTTTTTATTCATCTTGANATTGTATTTATTTATTTTATTTNATTTTNTTCATAGTNACATTGCTAATNAATACATTAATGTTTTCNTCNCATCAANGATGATANTGTTTCAACAGGTAAAGANGTGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATGTGTATGTGGTACATGGCAATGNTATGAANAGAACAAAACNTTNCGGNCAAACTGTATTTCTTANTGTAACNGTTNTTGCTCTGTTTNGNTATCCCCNGTAAGAATGCGACATTGCGC------------ATCTCTCTCTATATAGACGACCTT--------AAACAACCACCACTTTTCTTCCGAGGAGNAGNNAGTAAANNTAATTTTGAATCTAANANNAAACCTGTNACGTTCCAGATATCAGANNNNNNNNNNNATTTTGAAAAGCACATAT-GACA--ATTTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGANNNGGTGTATCTGTGAANATCAGACATAGGNTTTNAGTTTATATGTCATTATCAACAACNTTAATTGNAGCATTTANTAACACGATACAATNTGTAACAAACAAGATGTTTTTTTTCTAAGAATTAGGTCACTCTGACTATCGCAATACGAGTGTTGAACAAAGAGGNGTCANTNNAATTAATATAGGAAACNNAGCTNATATTGATTATTATTTATCATCGANAATATCGTTTTATCATGTCCGACCGGNAAAC
Reference ( gi|1 ) : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--ATGATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTG---TTTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTAACATTGCAACATTACAC------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGAAATCATTTT-T-AGACCATA-ATTTGCAA-CCTGTAGGA--CACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCGATAT--CTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATAG-TTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TA-TATGTCCAACCGGTAAAC
gi|2 : AGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NNNNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|7 : tcacGTGTACCGTAAGGGCCA--TCGTACTATCGCCTTGTCAtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|12 : tccgttaggactatcgtgctattgctttctcagcatgcacactcgatgccaccacaacactttgtcacgataaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---cgtatta
gi|9 : tgGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTA-TAACCGCCACACGCGATGCCAC-AT--CAC---G--ATGG-TACAATA---CGACAGCACACTGG
gi|10 : atgGTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATG---ACAC-------TGA-GATGGCA---C
gi|14 : tatgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCAcaatg
gi|8 : acgGTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--AT
gi|16 : ctGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATaccaataggctaatgatacgacaacac
gi|13 : tacgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCACg
gi|2 : acgTGTTCCGTTAGGGCCA--CTAGGATACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NNNNNNNNNNNN---NAGCGATAGCACGATGCCCCTAACGGAATACTGTGA
gi|3 : TGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--ATGATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATAtcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|18 : acgaTTCCGTTAGGACCA--TCATGTTATCGCTGTGtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|7 : aaactacggctTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCACGATAATGACAAGGCGATAGTA--CGA-TGGCCCTTACGGTACACCGTATTAt
gi|17 : TCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCA
gi|11 : TTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--ATAATTGTta
gi|14 : tacggtatacaaTGACA---AAACAATATCATGATGGCCCTAATGGAACACCGT
gi|16 : ACGGTATCGCGATGACCCTAACAGAACACCGTAacaagcatacacgatgcca
gi|2 : GATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTG---TTTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGAATACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtttgtggacaggaacacgcgatg
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA----TG--ACATTGCGC------------ATCTCTCTCTATATAGACGACCTT-----------CAAT--TTACTT-----CCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|5 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATTTTGAAAAGCACATAT-GACA--ATTTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGA
gi|2 : tgGGTGTATTTGTGAAAATCAGACATAG-ATTTTAGTTTATATGTCATTATCAATAA-CTTAATTAAAACA---ATTAACATGATACAATGTGT-----------TGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAAC
gi|4 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATT-ATTGCAGCATTTAATAACACAATACAATCTGTAACAAACAAGAT--------------AAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 2222222222222222 111 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333 333 222222 55555555555555555555 111 1111 11111111111 2 1 22 1 2 1 1 11 4444 11 8888888888 333 333 111 22 333 111 2 2 3333333
lowQualScore : 33 1 6 1 1111111111111111 000 8 3 6 0 7 7 0 1 1 1 0 1 1 000 1 1 1 1 0 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 11 1 1 11 1 777 0 1 777 1 1 1 1 1 333333 66666666666666666666 333 3333 0 1 22 22 1 22 0 1 11111111111 0 4 5 77 5 2 0 5 3 5 88 2222 2 3 2 66 3 88 7777777777 555 555 4 333 333 1 444 1 6 0 00 7 44 0 777 1 0 1 7 6 6 000 0 77 3 1 1 22 22 1 7 0 1 3 9999999 0 1
lowQualScore : .. . . . ................ ... . . . . . . . . . . . . . ... . . . . . . ................................................................................................................................. . . .. . . .. . ... . . ... . . . . . ...... .................... ... .... . . .. .. . .. . . ........... . . . .. . . . . . . .. .... . . . .. . .. .......... ... ... . ... ... . ... . . . .. . .. . ... . . . . . . ... . .. . . . .. .. . . . . . ....... . .
lowQualScore : 99 0 9 9 8888888888888888 000 5 3 0 7 3 3 7 0 0 0 7 0 0 333 0 0 0 0 7 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 77 0 0 77 0 777 7 0 333 0 0 0 0 0 333333 77777777777777777777 777 0000 7 0 00 00 0 00 7 0 00000000000 0 0 0 55 5 5 0 0 0 0 55 5555 5 0 5 00 0 55 5555555555 000 000 0 555 000 0 333 0 7 7 77 3 77 7 777 0 7 0 3 7 7 000 7 33 7 0 0 00 00 0 3 7 0 7 0000000 7 0
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTG---TTTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAA-A-TGCGACATTGCGCNNNNNNNN------------ATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAA-ATGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
Reference ( family-2056 ) : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGATAACAC---G--AT--------GATTATGACA---CGACAGTATCCCGGTGGCCCTAACGGAACACCGTAATACATCCGGCTTTATGTCGTGTTTTTTTTTTATTCATCTTGANATTGTATTTATTTATTTTATTTNATTTTNTTCATAGTNACATTGCTAATNAATACATTAATGTTTTCNTCNCATCAANGATGATANTGTTTCAACAGGTAAAGANGTGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATGTGTATGTGGTACATGGCAATGNTATGAANAGAACAAAACNTTNCGGNCAAACTGTATTTCTTANTGTAACNGTTNTTGCTCTGTTTNGNTATCCCCNGTAAGAATGCGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTTAAACAACCACCACTTTTCTTCCGAGGAGNAGNNAGTAAANNTAATTTTGAATCTAANANNAAACCTGTNACGTTCCAGATATCAGANNNNNNNNNNNATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAA----ATATATAGCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGANNNGGTGTATCTGTGAANATCAGACATAGGNTTTNAGTTTATATGTCATTATCAACAACNTTAATTGNAGCATTTANTAACACGATACAATNTGTAACAAACAAGATGTTTTTTTTCTAAGAATTAGGTCACTCTGACTATCGCAATACGAGTGTTGAACAAAGAGGNGTCANTNNAATTAATATAGGAAACNNAGCTNATATTGATTATTATTTATCATCGANAATATCGTTTTATCATGTCCGACCGGNAAAC
gi|1 : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--AT--------GATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTG---TTTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTAACATTGCAACATTACACNNNNNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGA-AATCATTT-TTAGACCATA-ATTTGCAA-CCTGTAGG--ACACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCG--ATATCTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATA-GTTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TAT-ATGTCCAACCGGTAAAC
gi|10 : GTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATGACA
gi|11 : tatgTTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--AT--------AATTGTctgagatggcaccaatg
gi|12 : tacggtatacaaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---
gi|13 : tgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCAC
gi|14 : acgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCA
gi|16 : acgGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATG
gi|17 : tacgTCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCATA
gi|18 : ACA---CAGCGATAACATGATGGTCCTAACGGAAAGCCGTAGT
gi|18 : aaTTCCGTTAGGACCA--TCATGTTATCGCTGTGT
gi|2 : aaactacggctAGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NN--------NNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|2 : tcacGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTG---TTTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGAATACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|2 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGGTGTATTTGTGAAAATCAGACATAG-ATTTTAGTTTATATGTCATTATCAATAAC-TTAATTAAAACA---ATTAACATGATACAATGTGT-----------TGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--AT--------GATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATA
gi|3 : acgaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA------TGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTT---CAA-------TTTACTTCCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|4 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATTA-TTGCAGCATTTAATAACACAATACAATCTGTAACAAACAAGAT--------------AAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
gi|5 : ATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAA----ATATATAGCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGAtaatataaatactcgcacagggcataatgtagaacattacagttcataattttatacaacacaaaactgtctatcactgttataactcattaatatatatttcatatttaaaaacaaaataataattatctaaatataaccaaaccccaggtgtacaccatgttttgaagttagaacaatgaattacctgtttccaacggtaatgcaagtgtatgtgggtgatactcattagaatacttatcatatctgttttctatcattg
gi|7 : tgTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCAC--------GATAATGACAAGGCGATAGTA---CGATGGCCCTTACGGTACACCGTATTA
gi|8 : GTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--ATACCAATAGGCTAATGATA---CGACA
gi|9 : ctGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTAT-AACCGCCACACGCGATGCCAC-AT--CAC---G--AT--------GG-TACAATA---CGACAGCACACTGGacac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 2222222222222222 111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 222 55555555 22222222222222222222 111 1111 1 1 11 1 1 1 1 11 2222 11 4444444444 222 222 1 11 11 222 22 111 1 1 2222222
lowQualScore : 33 1 4 1111111111111111 000 2 6 7 7 000 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333 333 44444444 22222222222222222222 333 3333 0 5 1 5 88 5 1 5 5 1 5 88 4444 1 1 1 22 1 88 1111111111 111 111 1 1 2 2 44 88 7 1 333 0 7 88 000 77 3 7 0 3 4444444 0
lowQualScore : .. . . ................ ... . . . . ... ......................................................................................................................... . ... ... ........ .................... ... .... . . . . .. . . . . . . .. .... . . . .. . .. .......... ... ... . . . . .. .. . . ... . . .. ... .. . . . . ....... .
lowQualScore : 99 0 1 8888888888888888 000 5 0 3 3 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 333 333 00000000 00000000000000000000 333 0000 7 0 0 0 00 5 0 5 0 0 0 55 5555 0 0 0 00 0 55 5555555555 555 000 0 0 5 0 00 77 3 0 333 7 3 77 000 33 3 3 7 3 7777777 7
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAA--TGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
Reference ( family-2056 ) : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAA-ATGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
gi|1 : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--AT--------GATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTA--ACATTGCAACATTACAC------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGA-AATCATTT-TTAGACCATA-ATTTGCAA-CCTGTAGGA--CACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCGATAT--CTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATAG-TTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TAT-ATGTCCAACCGGTAAAC
gi|10 : GTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATGACA
gi|11 : tatgTTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--AT--------AATTGTctgagatggcaccaatg
gi|12 : tacggtatacaaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---
gi|13 : tgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCAC
gi|14 : acgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCA
gi|16 : acgGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATG
gi|17 : tacgTCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCATA
gi|18 : ACA---CAGCGATAACATGATGGTCCTAACGGAAAGCCGTAGT
gi|18 : aaTTCCGTTAGGACCA--TCATGTTATCGCTGTGT
gi|2 : aaactacggctAGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NN--------NNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|2 : tcacGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGA-AT-ACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|2 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGGTGTATTTGTGAAAATCAGACATAGATTTTA-GTTTATATGTCATTATCAATAAC-TTAATTAAAACA---ATTAACATGATACAATGTGT-----------TGTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--AT--------GATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATA
gi|3 : acgaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA--------TGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTT---CAA-------TTTACTTCCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|4 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATT-ATTGCAGCATTTAATAACACAATACAATCTGTAACAAACAA--------------GATAAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
gi|5 : ATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGAtaatataaatactcgcacagggcataatgtagaacattacagttcataattttatacaacacaaaactgtctatcactgttataactcattaatatatatttcatatttaaaaacaaaataataattatctaaatataaccaaaccccaggtgtacaccatgttttgaagttagaacaatgaattacctgtttccaacggtaatgcaagtgtatgtgggtgatactcattagaatacttatcatatctgttttctatcattg
gi|7 : tgTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCAC--------GATAATGACAAGGCGATAGTAC---GATGGCCCTTACGGTACACCGTATTA
gi|8 : GTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--ATACCAATAGGCTAATGATA---CGACAACAC
gi|9 : ctGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTAT-AACCGCCACACGCGATGCC---ACATCAC---G--AT--------GG-TACAATA---CGACAGCACACTGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 2222222222222222 111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 222 55555555 22222222222222222222 111 1111 1 1 11 1 1 1 1 11 2222 11 4444444444 222 222 1 11 11 222 222 111 1 1 2222222
lowQualScore : 33 1 4 1111111111111111 000 2 6 7 7 000 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333 333 44444444 22222222222222222222 333 3333 0 5 1 5 88 5 1 5 5 1 5 88 4444 1 1 1 22 1 88 1111111111 111 111 1 1 2 2 44 88 7 1 333 0 7 555 000 77 3 7 0 3 4444444 0
lowQualScore : .. . . ................ ... . . . . ... ......................................................................................................................... . ... ... ........ .................... ... .... . . . . .. . . . . . . .. .... . . . .. . .. .......... ... ... . . . . .. .. . . ... . . ... ... .. . . . . ....... .
lowQualScore : 99 0 1 8888888888888888 000 5 0 3 3 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 333 333 00000000 00000000000000000000 333 0000 7 0 0 0 00 5 0 5 0 0 0 55 5555 0 0 0 00 0 55 5555555555 555 000 0 0 5 0 00 77 3 0 333 7 3 777 000 33 3 3 7 3 7777777 7
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
Reference ( family-2056 ) : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
gi|1 : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--AT--------GATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTA--ACATTGCAACATTACAC------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGA-AATCATTT-TTAGACCATA-ATTTGCAA-CCTGTAGGA--CACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCGATAT--CTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATAG-TTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TAT-ATGTCCAACCGGTAAAC
gi|10 : GTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATGACA
gi|11 : tatgTTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--AT--------AATTGTctgagatggcaccaatg
gi|12 : tacggtatacaaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---
gi|13 : tgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCAC
gi|14 : acgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCA
gi|16 : acgGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATG
gi|17 : tacgTCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCATA
gi|18 : ACA---CAGCGATAACATGATGGTCCTAACGGAAAGCCGTAGT
gi|18 : aaTTCCGTTAGGACCA--TCATGTTATCGCTGTGT
gi|2 : aaactacggctAGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NN--------NNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|2 : tcacGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGA-AT-ACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|2 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGGTGTATTTGTGAAAATCAGACATAGATTTTA-GTTTATATGTCATTATCAATAAC-TTAATTAAAACA---ATTAACATGATACAATGTGT---------T--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--AT--------GATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATA
gi|3 : acgaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA--------TGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTT---CAA-------TTTACTTCCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|4 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATT-ATTGCAGCATTTAATAACACAATACAATCTGTAACAAACAA--------------GATAAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
gi|5 : ATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGAtaatataaatactcgcacagggcataatgtagaacattacagttcataattttatacaacacaaaactgtctatcactgttataactcattaatatatatttcatatttaaaaacaaaataataattatctaaatataaccaaaccccaggtgtacaccatgttttgaagttagaacaatgaattacctgtttccaacggtaatgcaagtgtatgtgggtgatactcattagaatacttatcatatctgttttctatcattg
gi|7 : tgTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCAC--------GATAATGACAAGGCGATAGTAC---GATGGCCCTTACGGTACACCGTATTA
gi|8 : GTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--ATACCAATAGGCTAATGATA---CGACAACAC
gi|9 : ctGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTAT-AACCGCCACACGCGATGCC---ACATCAC---G--AT--------GG-TACAATA---CGACAGCACACTGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 2222222222222222 111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 222 55555555 22222222222222222222 111 1111 1 1 11 1 1 1 1 11 2222 11 4444444444 222 222 1 11 11 222 222 111 1 1 2222222
lowQualScore : 33 1 4 1111111111111111 000 2 6 7 7 000 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333 333 44444444 22222222222222222222 333 3333 0 5 1 5 88 5 1 5 5 1 5 88 4444 1 1 1 22 1 88 1111111111 111 111 1 1 2 2 44 88 7 1 333 0 7 555 000 77 3 7 0 3 4444444 0
lowQualScore : .. . . ................ ... . . . . ... ......................................................................................................................... . ... ... ........ .................... ... .... . . . . .. . . . . . . .. .... . . . .. . .. .......... ... ... . . . . .. .. . . ... . . ... ... .. . . . . ....... .
lowQualScore : 99 0 1 8888888888888888 000 5 0 3 3 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 333 333 00000000 00000000000000000000 333 0000 7 0 0 0 00 5 0 5 0 0 0 55 5555 0 0 0 00 0 55 5555555555 555 000 0 0 5 0 00 77 3 0 333 7 3 777 000 33 3 3 7 3 7777777 7
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
Reference ( family-2056 ) : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
gi|1 : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--AT--------GATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTA--ACATTGCAACATTACAC------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGA-AATCATTT-TTAGACCATA-ATTTGCAA-CCTGTAGGA--CACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCGATAT--CTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATAG-TTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TAT-ATGTCCAACCGGTAAAC
gi|10 : GTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATGACA
gi|11 : tatgTTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--AT--------AATTGTctgagatggcaccaatg
gi|12 : tacggtatacaaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---
gi|13 : tgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCAC
gi|14 : acgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCA
gi|16 : acgGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATG
gi|17 : tacgTCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCATA
gi|18 : ACA---CAGCGATAACATGATGGTCCTAACGGAAAGCCGTAGT
gi|18 : aaTTCCGTTAGGACCA--TCATGTTATCGCTGTGT
gi|2 : aaactacggctAGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NN--------NNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|2 : tcacGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGA-AT-ACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|2 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGGTGTATTTGTGAAAATCAGACATAGATTTTA-GTTTATATGTCATTATCAATAAC-TTAATTAAAACA---ATTAACATGATACAATGTGT---------T--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--AT--------GATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATA
gi|3 : acgaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA--------TGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTT---CAA-------TTTACTTCCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|4 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATT-ATTGCAGCATTTAATAACACAATACAATCTGTAACAAACAA--------------GATAAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
gi|5 : ATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGAtaatataaatactcgcacagggcataatgtagaacattacagttcataattttatacaacacaaaactgtctatcactgttataactcattaatatatatttcatatttaaaaacaaaataataattatctaaatataaccaaaccccaggtgtacaccatgttttgaagttagaacaatgaattacctgtttccaacggtaatgcaagtgtatgtgggtgatactcattagaatacttatcatatctgttttctatcattg
gi|7 : tgTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCAC--------GATAATGACAAGGCGATAGTAC---GATGGCCCTTACGGTACACCGTATTA
gi|8 : GTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--ATACCAATAGGCTAATGATA---CGACAACAC
gi|9 : ctGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTAT-AACCGCCACACGCGATGCC---ACATCAC---G--AT--------GG-TACAATA---CGACAGCACACTGG
blockSeqs : AT A G AATACCAATAG AGG C A T T TTA ATT GTA AGAATA NNNNNNNNNNNNNNNNNNNN AAA CCAC . A C . A G . G A G AA . C A C AA A AT . . . T G G A G CA A A TTT A T TAG TG T T T TTTTATT
blockSeqs : . T G TTTGTCAC . C A . . . . . . . . . G A C . G . . . . C . . . TAC
blockSeqs : . A N CAT . C T
blockSeqs : . A G NNN . A .
blockSeqs : . A C GAT . .
blockSeqs : . A A GAT .
blockSeqs : . T .
blockSeqs : . T .
blockSeqs : . C
blockSeqs : . C
blockSeqs : . C
blockSeqs : . G
blockSeqs : . C
blockSeqCons :
originalCons : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
finalCons : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 2222222222222222 111 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 222 55555555 22222222222222222222 111 1111 1 1 11 1 1 1 1 11 2222 11 4444444444 222 222 1 11 11 222 222 111 1 1 2222222
lowQualScore : 33 1 4 1111111111111111 000 2 6 7 7 000 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333 333 44444444 22222222222222222222 333 3333 0 5 1 5 88 5 1 5 5 1 5 88 4444 1 1 1 22 1 88 1111111111 111 111 1 1 2 2 44 88 7 1 333 0 7 555 000 77 3 7 0 3 4444444 0
lowQualScore : .. . . ................ ... . . . . ... ......................................................................................................................... . ... ... ........ .................... ... .... . . . . .. . . . . . . .. .... . . . .. . .. .......... ... ... . . . . .. .. . . ... . . ... ... .. . . . . ....... .
lowQualScore : 99 0 1 8888888888888888 000 5 0 3 3 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 333 333 00000000 00000000000000000000 333 0000 7 0 0 0 00 5 0 5 0 0 0 55 5555 0 0 0 00 0 55 5555555555 555 000 0 0 5 0 00 77 3 0 333 7 3 777 000 33 3 3 7 3 7777777 7
consensus : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
Reference ( family-2056 ) : AGTGTTCCGTTAGGGCCA--TCGTGNTATCGCTTTGTCAACAGGCACACGCGATGCCACGACAACAC---G--AT--------GATTATGACA---CGACAGTACCCTGGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCCGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTA--A-AT-GCGACATTGCGC------------NNNNNNNNATCTCTCTCTATATAGACGACCTTAAGCAACCACCACTTTTCTTCCGAGGAGTAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAGCACACTNCGACAATCATTTATNAGGCCATAGATTTGNAAGCCTGTAGGAAACACCAAATATATATATAGNCAAATANACTCTCANAATCATTCTATCTGTCATGGTNNACTNGATATATCTAAGGTTAAAAATTGTAATTTAAAGCCCTGAAAGTCTAAGAATANTCTCAAGAATGGTTGNCGAACACGACCCGGTGTATCTGTGAAAATCAGACATAGGTTTTAAGTTTATATGTCATTATCAATAACGTTAATTNCAACA---ATTAACACGATACAATGTGTAACAAACAAT--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATCGCAA-ACGAGTGTTGAACAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATCGACAA-ATCG---TATCATGTCCGACCGGTAAAC
gi|1 : AGTGTTCCGTTAGGGCCA--TCGTGCTATCGCTTTGCCAACAGGCAAACGCGATATCACGATAACAC---G--AT--------GATTATGGCA---CGACAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCAGCTTTATATCGTGTTTTTTTTTTATTCATTTTGAAATTGTATTTATTTATTTAATTTAATTTTATTCATAATTACATTGCTAATAAATACATTGATGTTTTCATCACATCAAAGATGATATTGTTTCAGCAAGTAAAGAAGTGTATAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTACTCTGTTTTGTTATCCCCAGTA--ACATTGCAACATTACAC------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACTATCACTTTTCTTCCAAGGAGTAGTGAGCAAAATTAACTTTGAATCTAACAGAAAACTTGTGACGTTCCAGATATCAGACTCAAGAATGAACTTTGAAAAACACACTTCGA-AATCATTT-TTAGACCATA-ATTTGCAA-CCTGTAGGA--CACCAAATATATATATAGACAAATACACTCTCAAAATCATTCTATCTATCATGGTCCACTCGATAT--CTAAGGTTAAAAATTGTAATTTAAAACTTTGAAAGTCTAAGAATAATTTCAAGAATAGTTGTCTAACACGACCCGGTGTATCTGTGAAAATCAGATATAG-TTTTAAGTTTATATATCATTATCAATAA-GTTAATTCCAACA---ATTAACATGATACAATGTGTAACAAACAATATGTTTTTTTTCTAAGAATTAAGTCACTTTGACTATTGCAA-ACGAGTGTTGAATAAAGAGGTGTCAATACAATTAATATAGGAAACCCAGCTTATATAGATTATTATTTATCATTGACAA-ATCG---TAT-ATGTCCAACCGGTAAAC
gi|10 : GTGTTCCGTTAGGTCCA--TCGTAACATCGCTGTGTCAACAGCCATACGCGATGGCATGACA
gi|11 : tatgTTAGGGCCA--TCATGTTATCGCTTTGTCAATGGATACACGAGATGGCAC-ATCATAC---C--AT--------AATTGTctgagatggcaccaatg
gi|12 : tacggtatacaaGTGTTCTGTTAGGGTCA--TCATTACATCGCTTTGTCGACAGGAACACACGATGCCACGATAACAC---
gi|13 : tgGTGCCCCGAAATGGACA--TCGTAATATTGCTTTGTCGACAGGGACACGCGATGCCAC
gi|14 : acgGTGTTCCATTAGGGCCA--TCATGATATTGTTTTGTCAACAAGCATACACGATGCCA
gi|16 : acgGTGTTCTGTTAGGGTCA--TCGCGATACCGTTTTGTGGACAGGAACACGCGATG
gi|17 : tacgTCCGTTAGGGTCGATTCGTGTTATCGCTTTGTCAACGGCCATA
gi|18 : ACA---CAGCGATAACATGATGGTCCTAACGGAAAGCCGTAGT
gi|18 : aaTTCCGTTAGGACCA--TCATGTTATCGCTGTGT
gi|2 : aaactacggctAGTATTCCGTTAGGGGCA--TCGTGCTATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--NN--------NNNNNNNNNN---NNNCAGTATCCTAGTGGCCCTAACGGAACATCGTAATACATCCGGCTTTATATCGTGTTTT-TTTTTATTCATTTTGAAATTGTATTTATTTATTTTATTTAATTTTATTCATAATTACATTGCTAATAAATACATTAATGTTTTCATCACATCAAAGATGATATTGTTTCAACAAGTAAAGAAGTATATA
gi|2 : tcacGATATATGTATGTGGTACATGACAATACTATGAATAGAACAAAACTTTCTGGACAAACTGT---TTTTAAT---ACAGTTATTGCTCTGTTTTGTTATCCCCAGTAAGA-AT-ACGATATTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAACCACCACTTTTCTTCCAAGGAGAAGTGAGTAAAATTAATTTTGAATCTAACAGAAAACTTGTGACGtgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|2 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtaGGTGTATTTGTGAAAATCAGACATAGATTTTA-GTTTATATGTCATTATCAATAAC-TTAATTAAAACA---ATTAACATGATACAATGTGT---------T--GTTTTTTTTCTAAGAATTAGGTCACTTTGACTATTGCAA-ATTAGTGTTGAACAAAGAGGTGTCATTACAATTAATATAGGAAACCCAGCTTATATTGATTATTATTTATCATTGACAA-ATCG---TA-CATGTCCAACCGGTAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgtatttgtgaaaatcagacatagattttagtttatatgtcattatcaataacttaattaaaacaattaacatgatacaatgtgttgttttttttctaagaattaggtcactttgactattgcaaattagtgttgaacaaagaggtgtcattacaattaatataggaaacccagcttatattgattattatttatcattgacaaatcgtacatgtccaaccggtaaac
gi|3 : tcacagtattccgttaggggcatcgtgctatcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtatcctagtggccctaacggaacatcgtaatacatccggctttatatcgtgtttttttttattcattttgaaattgtatttatttattttatttaattttattcataattacattgctaataaatacattaatgttttcatcacatcaaagatgatattgtttcaacaagtaaagaagtatatatgtattcatgtttatgcatatttatatttgtatttatacatgtttatgcacatttatatatgtatacatgtttatgcatattaaacatgtatacatgtatatgctggtgtatgtatgtagatatatgtatgtggtacatgacaatactatgaatagaacaaaactttctggacaaactgtttttaatacagttattgctctgttttgttatccccagtaagaatacgatattgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaccaccacttttcttccaaggagaagtgagtaaaattaattttgaatctaacagaaaacttgtgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTTTCATTAGG-CCA--TCGTGCTATCGCTTTGCCAACAGGCACACGCGGTACCACGAAAACAC---G--AT--------GATTATGCCA---CGACAATACCCTAGTGGCGCT-----AACATCGTAATATATCCGGCTTTATGTCGTGTTTTTTTT------ATCTTGATATTGTATTTATTTATTTTATTTCATTTTCTTTATAGTAACATTGCTAATCAATACA--------TTCCTCTCATCAATGATAATAGTATTTCAACAGGTAAAGATGTGTATA
gi|3 : acgaGATATGTGTATGTGGTACATGGCAATGATATGAAGAGAACAAAACATTACGGTCAAACTGTATTTCTTACTGTAACCGTTTTTGCTCTGTTTGGGTATCCCCTGTA--------TGACATTGCGC--------------------ATCTCTCTCTATATAGACGACCTT---CAA-------TTTACTTCCGAGGAATAGATAGTAAACATAATTTTGAATTTAAGATTAAACCTGTCACATTCCAGATATCAGAtgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctagatatgtgtatgtggtacatggcaatgatatgaagagaacaaaacattacggtcaaactgtatttcttactgtaaccgtttttgctctgtttgggtatcccctgtatgacattgcgcatctctctctatatagacgaccttcaatttacttccgaggaatagatagtaaacataattttgaatttaagattaaacctgtcacattccagatatcaga
gi|4 : acgatgtttcattaggccatcgtgctatcgctttgccaacaggcacacgcggtaccacgaaaacacgatgattatgccacgacaataccctagtggcgctaacatcgtaatatatccggctttatgtcgtgttttttttatcttgatattgtatttatttattttatttcattttctttatagtaacattgctaatcaatacattcctctcatcaatgataatagtatttcaacaggtaaagatgtgtatatgtatatatgtttatgcaggtttctatatgtatacatgtttttgcatatttatatatgtatacctgtttatgcaggtgtatgcatctaATCTGTAAATATCAGACATAGGTTTTAA-TTTATATGTCATTATCAACAACATT-ATTGCAGCATTTAATAACACAATACAATCTGTAACAAACAA--------------GATAAT---GTCACTCTGACTATC-CAATACGAATGTTGAACAAAAAAGAGTCAATCGAATTAATATAGGAAACAGAGCTGATATTGA-----------CATCAAAAATATTGTTTTATTATGTCCGACCGGGAAAC
gi|5 : ATTTTGAAAAGCACA-TATGACAAT--TTTATGAGGCC-TAGATTTGAAAGCTTGTAGGAAACACTAAATATATA----GCCAAATAAACTCTCACAATTATTCTATCTGTCATGATAAACTAGATATATCTAA----------TGTA---TAAAGCCC---AAGTCTAAGAATATTCTCAAGAATGGTTGGTGAATACGAtaatataaatactcgcacagggcataatgtagaacattacagttcataattttatacaacacaaaactgtctatcactgttataactcattaatatatatttcatatttaaaaacaaaataataattatctaaatataaccaaaccccaggtgtacaccatgttttgaagttagaacaatgaattacctgtttccaacggtaatgcaagtgtatgtgggtgatactcattagaatacttatcatatctgttttctatcattg
gi|7 : tgTCCGTTAGGACTA--TCGTGCTATTGCTTTCTCAGCATGCACACTCGATGCCACCACAACACTTTGTCAC--------GATAATGACAAGGCGATAGTAC---GATGGCCCTTACGGTACACCGTATTA
gi|8 : GTGATTCGTTAAACCCA--TTATGGTATCACTTTGTCAACAAGTACACGCGATGCCACAACGATAC---A--ATACCAATAGGCTAATGATA---CGACAACAC
gi|9 : ctGTGTCCAGTTAGGGCCA--TCGTGCTATCGATTTAT-AACCGCCACACGCGATGCC---ACATCAC---G--AT--------GG-TACAATA---CGACAGCACACTGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGTAATCATTACAATGACCAGTATGATTCTATCAATGATAAGTATTCATCAAACATATAATGTAATGTATATATGTATATGTATATATGTATACATGTTTAGTTAATATTAAGAATTTATAGTAGTAATTTGTTTA
Unaligned ( gi|15 ): TGAATAAACATCTGACCTATGCCTTTCTGGTAAACTTTTAAGATACTTCAAATGTATA
Unaligned ( gi|19 ): CATTTAAGTTTGCAAGTCGGTGTGCCTTTAAG