lowQualScore : 1 33333 11 11 888888888888 1111111111111 1111 1111111 2 111 111111 22222222 111111 1 55555555555555 444444444444444444444444 1
lowQualScore : 0 22222 44 22 666 22 777777777777 1111111111111 5555 7 1 5 3333333 0 1 3 4 0 5555 555 3 3 888888 000 888888 33 888888 33 888888 5 66666666 5 222222 55 4 4 7 22222222222222 000000000000000000000000 5 0 3
lowQualScore : . ..... .. .. ... .. ............ ............. .... . . . ....... . . . . . .... ... . . ...... ... ...... .. ...... .. ...... . ........ . ...... .. . . . .............. ........................ . . .
lowQualScore : 0 88888 33 66 888 11 666666666666 9999999999999 5555 3 3 2 3333333 5 8 2 0 4 0000 111 1 5 888888 888 222222 99 222222 22 555555 7 22222222 2 888888 55 3 2 8 22222222222222 333333333333333333333333 0 8 0
consensus : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTTTAGACAC---TACCNT-AATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAACACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCCAAATCAATA---GG---AGTGGA------ATGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCCANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
Reference ( gi|1 ) : CTAGGTTTTTTTGTGTGAAAAC-TATCTATTATCCAT-A-ACTTTTTTTAGATACCGGTACTTT-AATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCCAAATCAATA---GT---AATGGA------ATGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCACCAAATTATGTTTTTTCATCAGCCATT
gi|3 : CTATGTTTTTTTTTGTGAAAAC-TATACATTATCCAT-A-ACTTTTTTTAGATAC------TTT-AATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-TAGTTTCATTTTAAAT------AAATTA---ATG------TATACAA--AAG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATTGGA-CTTGCATTATTTATACCCAAATCAATA---GG---AGTGGA------ATGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAAGTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATGAGCCATT
gi|4 : CTATGTTTTTTTATG--AAAAC-TATCCATTATCCAT-A-ACTTTTTTTAGATAC------TTT-AATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATGGAACAAATTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCCAAATCAATA---AG---AGTGGA------ATGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATCAGC
gi|6 : aCTATGTTTTTTT-TGTGAAAAC-TATCCATTGTCCAT-A-ACTTTTTTTAGATAC------TTT-AATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATAGAACAAATTCATGCAACAAAACTTAATAACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TACACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCCAAATCAATA---GG---AGTGGA------ATGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGT
gi|15 : aCTATGTTTTTTT-TGTGAAAAC-TATCCATTATCCAT-A-ACTTTCTTTAGATAC------TTT-AAAGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAACTTACACAG-AATACAACTGGTAAGTCATGATA
gi|12 : GATTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTTTAGGCAT---TACCAT---TGTGAATTTA-------TAACGCTA----TTT-AAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCCAAATTACATAGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------AAACA
gi|10 : GTTTTTTTTAATAAAATG-TACCCCTTATTTAT-T-ACTTTTTTTAGACAT---TACCAT---TGTGAATTTAAATTGTGT-----TA----TTT-AAATAAATTGTGATTATTTTT-CATATTATGT--C---TTTATACAACAAATCTAAATCACTAAGTAATACAACTGGTAAATCATGATA-AATAACACCTTAAAATA-----T--CA----GTTTCATTTTAAAT------ATATTA---ATA------TGTATAG--ATA------TAACATTATTAgta
gi|11 : TTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTTTAGGCAT---TACCAT---TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAAGAAATCCAAATTACATTGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------TAACA
gi|8 : aTTTTTTTAC---AAAATGTACCCCTTATTTATTA-CCTTTTTTTAGGCAT---TACCAT---TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTCGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCTAAATTACATAGTAATACAACTGCTAAGTCGTGATAT-ATAACGC--------------T--TAA-GAGTTTCATTTTAAGTATAACAATATTA---ATG------TATACAGTCATA------TAA-ATAATTATAACTTCTGTGC-TG-TGC--TTATATATAatatt
gi|2 : TTTTTTCCACGAAACG-TATCCTTTATCCAT-ATATTTTTCTT-----CC---------AATGTGAATGTA-------T-----CA----ATT-AAGTAAATTG--ATTATTTTTTCAGATTCTGA--C---TC--TG-----GAATTAAATTACACAGTAATACAACTGATAAATCATGATATATCAATATCATAAAATAGAAG-T--AAA-TAGTTTCATTATGAAT------ATATTA---ATG------TATACAA--ATG------TAACGTGGATAT------TGTGCATGATGCAATTATCCATAAAATGGGA-CTTGTATTATTTATACCCAAATCAATATGAGTGGAAACGGACTTTTTATGTACCCGTT--TTGAAAACACTTTTGGGTCGCGCTCAGTTCCAGTGACTTTT-GCAG--------------AATTATTTTCCTTTAAATTT---------GTTTCTCAACAATTTATGTTTTT
gi|5 : gTTTTTTG-GTGAAATG-CATCT--T-TCCAT-A-ACTTTTTT-----ATTTATTCTTCCAAGGTGAATTAA-------T-----TG----TTG-AAGTAAACTG--ATTATTTTTTCAGATTACGG--C---TTCATGCAATAAAACTAAATTACACATTAATACAACTTGTAAATCATGATATACTGACACCTTAAAATAGCTG-T--AAA-GAGTTTCATTTT-GAT------ATATTG---ATGTATCGTTATATAA--ATG------TAACA-------------TGTGCATGCTGCAATTattgaagcca
gi|7 : AATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAATATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACAAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCCAAATCACTA---GG---AGTGGA------ATGTACTGGTT--TTGCAATCACTTTATGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATAATGTTTTTTCATCAGCCAtgagtgagaactagcttttttaaatacatgttttgtaaccacttttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaagtttctcaacaaattatgttattgtagcaacca
gi|14 : CAACTGGTAAATCATGATATA------CCTTAAAATAGCAGAT--AAA-AAGTTTCATTTT-GAT------ATATTG---ATG------TATATAA--ATG------TAACA-------------TATGCATGCTGCAATTg
gi|9 : cAATAATACTTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAGT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATGGGA-CTTGCATTATTTATACCTAAATCAATA---GG---AGTGGA------ATGTACTGGTA--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGAATATT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCAGCAGCCAtgagtggaaactggctatttgcaacctcttttgggttgcatttagttccatagacttttggcagtg
gi|19 : ACTTTAAAATAGCAG-TATCAAAGAGTTTCATTTT-AAT------ATATTG---ATG------TAT------ATG------TAACg
gi|13 : ------TATATAA--ATGAAGCATTAACATA--TATAAA---TGTGCATGCTGCAGTT-----TAAG-TGGAAACTGGCTTTGTT------------------------------------ATGTACTGGTT--TTGAAACCATTTTTTGGTTGCGTTTAGTTCCATTGACTTTTGGCAGTGTTATTGTCCTTTAATTA-------------CTTATAA----GTTTCTCAACGAATTATCTTATTGTAGCAGC
gi|14 : a---AGTGGA------A---ACTGGCTATTTGCAACCTCTTTTGGGTTGCATTTAGTTCCATAGACTTTTGGCAG--------------
gi|16 : ccaactggtaaatcatgatataccttaaaatagcagataaaaagtttcattttgatatattgatgtatataaatgtaacatatgcatgctgcaatttg------ATGAACCAGTT--TTGCAACCACTTTTAGATTGCATTTTGTTCCATCTACTTTTGGCAG--------------AGTTA-------------TT---------Gtg
gi|17 : caaatcagttggagtgaaaactgacttttttGTT--TTGCAACAACTTT-GGGTTGCATTTAGTTCCATTGACTTTTGGCAGTGTTATTGCTCTTTAATTA-------------TTTTCAAACAAGTTTCTCAACAAATGATGTTATTgccattgattatttataatcaagtttctcaacaaatatgtcaccatagcaacca
gi|5 : ---------GTTTCTCAACAAATTATGTTATTGTAGCAACCAatagcagt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TACATGAATCAGTTGGATGAAAACTTACTTTTTTAAAATGTTTTACAGATGATCATTTTTTGAGCATCTT
Unaligned ( gi|20 ): GTTTTTTTTACAAAATGTATCCCTTATTTATTACCTTTTTT
Alignments
lowQualScore : 222 11 222222 1111111 1111 111 1 111 111111 22222222222222222222222222 2 44444444444444 333333333333333333333333
lowQualScore : 000 22 2 555 3 1 666 555555 0000000 88888 4444 6 0 1 99 111 5 2 0 3 2 2 444 2 2 888888 000 777777 33 777777 11 666666 0 2 4 4 2 99999999999999999999999999 44 0 2 1 0 77777777777777 444444444444444444444444 0 1
lowQualScore : ... .. . ... . . ... ...... ....... ..... .... . . . .. ... . . . . . . ... . . ...... ... ...... .. ...... .. ...... . . . . . .......................... .. . . . . .............. ........................ . .
lowQualScore : 999 11 3 444 6 0 444 333333 8888888 33333 2222 7 4 0 22 777 5 3 5 0 9 9 000 9 6 222222 000 777777 77 777777 33 888888 8 4 4 4 8 66666666666666666666666666 66 1 5 0 0 00000000000000 111111111111111111111111 2 0
consensus : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCNTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
Reference ( family-2016 ) : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGACAC---TACCNTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAACACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCCANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
gi|1 : CTAGGTTTTTTTGTGTGAAAAC-TATCTATTATCCAT-A-ACTTTTTT-TAGATACCGGTACTTTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGTAATGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCACCAAATTATGTTTTTTCATCAGCCATT
gi|10 : GTTTTTTTTAATAAAATG-TACCCCTTATTTAT-T-ACTTTTTT-TAGACAT---TACCAT--TGTGAATTTAAATTGTGT-----TA----TTT-AAATAAATTGTGATTATTTT-TCATATTATGT--C---TTTATACAACAAATCTAAATCACTAAGTAATACAACTGGTAAATCATGATA-AATAACACCTTAAAATA-----T--C----AGTTTCATTTTAAAT------ATATTA---ATA------TGTATAG--ATA------TAACATTATTA
gi|11 : TTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAAGAAATCCAAATTACATTGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------TAACA
gi|12 : aTTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------TAACGCTA----TTT-AAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCCAAATTACATAGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------AAACAatatt
gi|13 : ga------TATATAA--ATGAAGCATTAACATA--TATAAA---TGTGCATGCTGCAGTT-----TAAG-TG-GAAACTGGCTTTGTT------------------------------------A-------------TGTACTGGTT--TTGAAACCATTTTTTGGTTGCGTTTAGTTCCATTGACTTTTGGCAGTGTTATTGTCCTTTAATTA-------------CTTATAA----GTTTCTCAACGAATTATCTTATTGTAGCAGCgta
gi|14 : aCAACTGGTAAATCATGATATA------CCTTAAAATAGCAGAT--AAA-AAGTTTCATTTT-GAT------ATATTG---ATG------TATATAA--ATG------TAACA-------------TATGCATGCTGCAATT
gi|14 : cCAATTTGAGTGGA------------A----------------ACTGGCTATTTGCAACCTCTTTTGGGTTGCATTTAGTTCCATAGACTTTTGGCAG--------------tgagtggaaactggctatttgcaacctcttttgggttgcatttagttccatagacttttggcagtg
gi|15 : ccaactggtaaatcatgatataccttaaaatagcagataaaaagtttcattttgatatattgatgtatataaatgtaacatatgcatgctgCTATGTTTTTTTT-GTGAAAAC-TATCCATTATCCAT-A-ACTTTCTT-TAGATAC---T---TTAAAGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAACTTACACAG-AATACAACTGGTAAGTCATGATAtg
gi|16 : CAAATCAGTTGGAGTGAA------------AACTGACTTTTTTATGAACCAGTT--TTGCAACCACTTTTAGATTGCATTTTGTTCCATCTACTTTTGGCAG--------------AGTTA-------------TT---------G
gi|17 : GTT--TTGCAACAACTTT-GGGTTGCATTTAGTTCCATTGACTTTTGGCAGTGTTATTGCTCTTTAATTA-------------TTTTCAAACAAGTTTCTCAACAAATGATGTTATTATAGCAGgccattgattatttataatcaagtttctcaacaaatatgtcaccatagcaacca
gi|19 : ACTTTAAAATAGCAG-TATCAAAGAGTTTCATTTT-AAT------ATATTG---ATG------TAT------ATG------TAACt
gi|2 : TTTTTTCCACGAAACG-TATCCTTTATCCAT-ATATTTTTCT-T-----------CC--AATGTGAATGTA-------T-----CA----ATT-AAGTAAATTG--ATTATTTTTTCAGATTCTGA--C---TC--TG-----GAATTAAATTACACAGTAATACAACTGATAAATCATGATATATCAATATCATAAAATAGAAG-T--AAA-TAGTTTCATTATGAAT------ATATTA---ATG------TATACAA--ATG------TAACGTGGATAT------TGTGCATGATGCAATTATCCATAAAATG-GGA-CTTGTATTATTTATACCCAAATCAATATGAGTGGAAACGGACTTTTTA-------------TGTACCCGTT--TTGAAAACACTTTTGGGTCGCGCTCAGTTCCAGTGACTTTT-GCAG--------------AATTATTTTCCTTTAAATTT---------GTTTCTCAACAATTTATGTTTTT
gi|3 : gCTATGTTTTTTTTTGTGAAAAC-TATACATTATCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-TAGTTTCATTTTAAAT------AAATTA---ATG------TATACAA--AAG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATT-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAAGTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATGAGCCATTattgaagcca
gi|4 : CTATGTTTTTTTA--TGAAAAC-TATCCATTATCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATGGAACAAATTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAAGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATCAGC
gi|5 : aTTTTTTGGTGAAATG-CATC--TT-TCCAT-A-ACTTTTTTATTTATTC---TTCC--AAGGTGAATTAA-------T-----TG----TTG-AAGTAAACTG--ATTATTTTTTCAGATTACGG--C---TTCATGCAATAAAACTAAATTACACATTAATACAACTTGTAAATCATGATATACTGACACCTTAAAATAGCTG-T--AAA-GAGTTTCATTTT-GAT------ATATTG---ATGTATCGTTATATAA--ATG------TAACA-------------TGTGCATGCTGCAATT-T-----GAGTGAGAA-CTAGC-TTTTTTA----------AATA-------C------------A-------------TG------TT--TTGTAACCACTTTTGG
gi|5 : ---------GTTTCTCAACAAATTATGTTATTGTAGCAACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaagtttctcaacaaattatgttattgtagcaacca
gi|6 : ttttttggtgaaatgcatctttccataacttttttatttattcttccaaggtgaattaattgttgaagtaaactgattattttttcagattacggcttcatgcaataaaactaaattacacattaatacaacttgtaaatcatgatatactgacaccttaaaatagctgtaaagagtttcattttgatatattgatgtatcgttatataaatgtaacatgtgcatgctgcaatttgagtgagaactagcttttttaaatacatgttttgtaaccacttttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaCTATGTTTTTTTT-GTGAAAAC-TATCCATTGTCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATAGAACAAATTCATGCAACAAAACTTAATAACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TACACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGT
gi|7 : aAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAATATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACAAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCACTAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTATGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATAATGTTTTTTCATCAGCCA
gi|8 : TTTTTTTAC---AAAATGTACCCCTTATTTATTA-CCTTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTCGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCTAAATTACATAGTAATACAACTGCTAAGTCGTGATAT-ATAACGC--------------T--TAA-GAGTTTCATTTTAAGTATAACAATATTA---ATG------TATACAGTCATA------TAA-ATAATTATAACTTCTGTGC-TG-TGC--TTATATATAg
gi|9 : AATAATACTTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAGT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCTAAATCAATAGGAGTGGA------------A-------------TGTACTGGTA--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGAATATT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCAGCAGCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACATGAATCAGTTGGATGAAAACTTACTTTTTTAAAATGTTTTACAGATGATCATTTTTTGAGCATCTT
Unaligned ( gi|20 ): GTTTTTTTTACAAAATGTATCCCTTATTTATTACCTTTTTT
Alignments
lowQualScore : 222 11 222222 1111111 1111 111 1 111 111111 22222222222222222222222222 2 44444444444444 333333333333333333333333
lowQualScore : 000 22 2 555 3 666 555555 0000000 88888 4444 6 0 1 99 111 5 2 3 2 2 444 2 2 888888 000 777777 33 777777 11 666666 0 2 4 4 2 99999999999999999999999999 44 0 1 1 0 77777777777777 444444444444444444444444 0 1
lowQualScore : ... .. . ... . ... ...... ....... ..... .... . . . .. ... . . . . . ... . . ...... ... ...... .. ...... .. ...... . . . . . .......................... .. . . . . .............. ........................ . .
lowQualScore : 999 11 3 444 6 444 333333 8888888 33333 2222 7 4 0 22 777 5 3 0 9 9 000 9 6 222222 000 777777 77 777777 33 888888 8 4 4 4 8 66666666666666666666666666 66 1 0 0 0 00000000000000 111111111111111111111111 2 0
consensus : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCNTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
Reference ( family-2016 ) : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCNTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
gi|1 : CTAGGTTTTTTTGTGTGAAAAC-TATCTATTATCCAT-A-ACTTTTTT-TAGATACCGGTACTTTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGTAATGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCACCAAATTATGTTTTTTCATCAGCCATT
gi|10 : GTTTTTTTTAATAAAATG-TACCCCTTATTTAT-T-ACTTTTTT-TAGACAT---TACCAT--TGTGAATTTAAATTGTGT-----TA----TTT-AAATAAATTGTGATTATTTT-TCATATTATGT--C---TTTATACAACAAATCTAAATCACTAAGTAATACAACTGGTAAATCATGATA-AATAACACCTTAAAATA-----T--C----AGTTTCATTTTAAAT------ATATTA---ATA------TGTATAG--ATA------TAACATTATTA
gi|11 : TTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAAGAAATCCAAATTACATTGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------TAACA
gi|12 : aTTTTTTTAC---AAAATGTACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------TAACGCTA----TTT-AAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCCAAATTACATAGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------AAACAatatt
gi|13 : ga------TATATAA--ATGAAGCATTAACATA--TATAAA---TGTGCATGCTGCAGTT-----TAAG-TG-GAAACTGGCTTTGTT------------------------------------A-------------TGTACTGGTT--TTGAAACCATTTTTTGGTTGCGTTTAGTTCCATTGACTTTTGGCAGTGTTATTGTCCTTTAATTA-------------CTTATAA----GTTTCTCAACGAATTATCTTATTGTAGCAGCgta
gi|14 : aCAACTGGTAAATCATGATATA------CCTTAAAATAGCAGAT--AAA-AAGTTTCATTTT-GAT------ATATTG---ATG------TATATAA--ATG------TAACA-------------TATGCATGCTGCAATT
gi|14 : cCAATTTGAGTGGA------------A----------------ACTGGCTATTTGCAACCTCTTTTGGGTTGCATTTAGTTCCATAGACTTTTGGCAG--------------tgagtggaaactggctatttgcaacctcttttgggttgcatttagttccatagacttttggcagtg
gi|15 : ccaactggtaaatcatgatataccttaaaatagcagataaaaagtttcattttgatatattgatgtatataaatgtaacatatgcatgctgCTATGTTTTTTTT-GTGAAAAC-TATCCATTATCCAT-A-ACTTTCTT-TAGATAC---T---TTAAAGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAACTTACACAG-AATACAACTGGTAAGTCATGATAtg
gi|16 : CAAATCAGTTGGAGTGAA------------AACTGACTTTTTTATGAACCAGTT--TTGCAACCACTTTTAGATTGCATTTTGTTCCATCTACTTTTGGCAG--------------AGTTA-------------TT---------G
gi|17 : GTT--TTGCAACAACTTT-GGGTTGCATTTAGTTCCATTGACTTTTGGCAGTGTTATTGCTCTTTAATTA-------------TTTTCAAACAAGTTTCTCAACAAATGATGTTATTATAGCAGgccattgattatttataatcaagtttctcaacaaatatgtcaccatagcaacca
gi|19 : ACTTTAAAATAGCAG-TATCAAAGAGTTTCATTTT-AAT------ATATTG---ATG------TAT------ATG------TAACt
gi|2 : TTTTTTCCACGAAACG-TATCCTTTATCCAT-ATATTTTTCT-T-----------CC--AATGTGAATGTA-------T-----CA----ATT-AAGTAAATTG--ATTATTTTTTCAGATTCTGA--C---TC--TG-----GAATTAAATTACACAGTAATACAACTGATAAATCATGATATATCAATATCATAAAATAGAAG-T--AAA-TAGTTTCATTATGAAT------ATATTA---ATG------TATACAA--ATG------TAACGTGGATAT------TGTGCATGATGCAATTATCCATAAAATG-GGA-CTTGTATTATTTATACCCAAATCAATATGAGTGGAAACGGACTTTTTA-------------TGTACCCGTT--TTGAAAACACTTTTGGGTCGCGCTCAGTTCCAGTGACTTTT-GCAG--------------AATTATTTTCCTTTAAATTT---------GTTTCTCAACAATTTATGTTTTT
gi|3 : gCTATGTTTTTTTTTGTGAAAAC-TATACATTATCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-TAGTTTCATTTTAAAT------AAATTA---ATG------TATACAA--AAG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATT-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAAGTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATGAGCCATTattgaagcca
gi|4 : CTATGTTTTTTTA--TGAAAAC-TATCCATTATCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATGGAACAAATTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAAGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATCAGC
gi|5 : aTTTTTTGGTGAAATG-CATC--TT-TCCAT-A-ACTTTTTTATTTATTC---TTCC--AAGGTGAATTAA-------T-----TG----TTG-AAGTAAACTG--ATTATTTTTTCAGATTACGG--C---TTCATGCAATAAAACTAAATTACACATTAATACAACTTGTAAATCATGATATACTGACACCTTAAAATAGCTG-T--AAA-GAGTTTCATTTT-GAT------ATATTG---ATGTATCGTTATATAA--ATG------TAACA-------------TGTGCATGCTGCAATT-T-----GAGTGAGAA-CTAGC-TTTTTTA----------AATA-------C------------A-------------TG------TT--TTGTAACCACTTTTGG
gi|5 : ---------GTTTCTCAACAAATTATGTTATTGTAGCAACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaagtttctcaacaaattatgttattgtagcaacca
gi|6 : ttttttggtgaaatgcatctttccataacttttttatttattcttccaaggtgaattaattgttgaagtaaactgattattttttcagattacggcttcatgcaataaaactaaattacacattaatacaacttgtaaatcatgatatactgacaccttaaaatagctgtaaagagtttcattttgatatattgatgtatcgttatataaatgtaacatgtgcatgctgcaatttgagtgagaactagcttttttaaatacatgttttgtaaccacttttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaCTATGTTTTTTTT-GTGAAAAC-TATCCATTGTCCAT-A-ACTTTTTT-TAGATAC---T---TTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATAGAACAAATTCATGCAACAAAACTTAATAACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TACACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGT
gi|7 : aAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAATATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACAAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCACTAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTATGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATAATGTTTTTTCATCAGCCA
gi|8 : TTTTTTTAC---AAAATGTACCCCTTATTTATTA-CCTTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTCGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCTAAATTACATAGTAATACAACTGCTAAGTCGTGATAT-ATAACGC--------------T--TAA-GAGTTTCATTTTAAGTATAACAATATTA---ATG------TATACAGTCATA------TAA-ATAATTATAACTTCTGTGC-TG-TGC--TTATATATAg
gi|9 : AATAATACTTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAGT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCTAAATCAATAGGAGTGGA------------A-------------TGTACTGGTA--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGAATATT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCAGCAGCCA
blockSeqs : TAA TG C AT A . ACCAT AATTGTG AACGC CACT T T AA AAA T A C C A ATC A A ATAACA ATC TATCGT TC AAGCAT AT AACTTC C A A T AACTGACTTTTTTA AT C T G TGTTATTGTCCTTT TTTTCCTTTAAATTT G
blockSeqs : CCA TG C TA . . ACCAT . . CACT T T AA AAA T A C C . C . A . ATC . . . GA AAA T . . G AACGGACTTTTTA . C T G TGTTATTGCTCTTT TTTTCAAACAA G
blockSeqs : TTG TG C T . . ACCAT . . . . T . . T A T A . A . A . . . . . AC . T . . T A . C T G . CTTATAA T
blockSeqs : TGG G A T . . ACCAT . . . . A . . T A C T . A . G . . . . . AC . T . . G A . C T G . TT T
blockSeqs : AC C T T . . TCCA . . . . T . . T A C T . C . A . . . . . AC . T . . A A . C G . . TT G
blockSeqs : AC G A A . . TTA . . . . A . . T A C C . C . A . . . . . AC . A . . G A . A A . . TT T
blockSeqs : TG C A A . . CCA . . . . A . . . A C T . A . A . . . . . AT . T . . G A . A A . . TT G
blockSeqs : TG C A A . . TTA . . . . T . . . A C T . C . A . . . . . AC . . . . G A . A A . . TT
blockSeqs : AC G C A . . TTA . . . . A . . . A C T . C . A . . . . . . . . . A . A A . .
blockSeqs : A C . A . . TTA . . . . A . . . . T . . T . A . . . . . . . . A .
blockSeqs : . . . . T . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : TG* *** ACCAT*
originalCons : CTATGTTTTTTTNCGTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCNTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
finalCons : CTATGTTTTTTTTG-TGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCAT-ATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACATGAATCAGTTGGATGAAAACTTACTTTTTTAAAATGTTTTACAGATGATCATTTTTTGAGCATCTT
Unaligned ( gi|20 ): GTTTTTTTTACAAAATGTATCCCTTATTTATTACCTTTTTT
Alignments
lowQualScore : 1 222 1111111 1111 111 1 111 111111 22222222222222222222222222 2 44444444444444 333333333333333333333333
lowQualScore : 666 999 2 555 3 666 3 888 0000000 88888 4444 6 0 1 99 111 5 2 3 2 2 444 2 2 888888 000 777777 33 777777 11 666666 0 2 4 4 2 99999999999999999999999999 44 0 1 1 0 77777777777777 444444444444444444444444 0 1
lowQualScore : ... ... . ... . ... . ... ....... ..... .... . . . .. ... . . . . . ... . . ...... ... ...... .. ...... .. ...... . . . . . .......................... .. . . . . .............. ........................ . .
lowQualScore : 333 111 3 444 6 444 4 111 8888888 33333 2222 7 4 0 22 777 5 3 0 9 9 000 9 6 222222 000 777777 77 777777 33 888888 8 4 4 4 8 66666666666666666666666666 66 1 0 0 0 00000000000000 111111111111111111111111 2 0
consensus : CTATGTTTTTTT-T-GCGAAANN-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCATA-TGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
Reference ( family-2016 ) : CTATGTTTTTTT-T-GTGAAAAC-TATCCNTTATCCAT-A-ACTTTTTT-TAGATAC---TACCATA-TGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATNATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAGTAATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAACCACTTTTGGGTCGCGCTTAGTTCNANTGACTTTTGGCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCANCAGCCATT
gi|1 : CTAGGTTTTTTTGT-GTGAAAAC-TATCTATTATCCAT-A-ACTTTTTT-TAGATACCGGTACTTTAATGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGTAATGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCACCAAATTATGTTTTTTCATCAGCCATT
gi|10 : GTTTTTTT-T-AATAAAATGTACCCCTTATTTAT-T-ACTTTTTT-TAGACAT---TACCAT--TGTGAATTTAAATTGTGT-----TA----TTT-AAATAAATTGTGATTATTTT-TCATATTATGT--C---TTTATACAACAAATCTAAATCACTAAGTAATACAACTGGTAAATCATGATA-AATAACACCTTAAAATA-----T--C----AGTTTCATTTTAAAT------ATATTA---ATA------TGTATAG--ATA------TAACATTATTA
gi|11 : TTTTTT-T-ACAAAATG-TACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAAGAAATCCAAATTACATTGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------TAACA
gi|12 : aTTTTTT-T-ACAAAATG-TACCCCTTATTTAT-T-ACCTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------TAACGCTA----TTT-AAGTAAACTTTGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCCAAATTACATAGTAATACAACTGGTAAGTCATGATAT-ATAACAC--TA--------------AA-GAGTTTCATTTTAAAT------ATATTAATCATG------TGTATAA--ATA------AAACAatatt
gi|13 : ga------TATATAA--ATGAAGCATTAACATA--TATAAA---TGTGCATGCTGCAGTT-----TAAG-TG-GAAACTGGCTTTGTT------------------------------------A-------------TGTACTGGTT--TTGAAACCATTTTTTGGTTGCGTTTAGTTCCATTGACTTTTGGCAGTGTTATTGTCCTTTAATTA-------------CTTATAA----GTTTCTCAACGAATTATCTTATTGTAGCAGCgta
gi|14 : aCAACTGGTAAATCATGATATA------CCTTAAAATAGCAGAT--AAA-AAGTTTCATTTT-GAT------ATATTG---ATG------TATATAA--ATG------TAACA-------------TATGCATGCTGCAATT
gi|14 : cCAATTTGAGTGGA------------A----------------ACTGGCTATTTGCAACCTCTTTTGGGTTGCATTTAGTTCCATAGACTTTTGGCAG--------------tgagtggaaactggctatttgcaacctcttttgggttgcatttagttccatagacttttggcagtg
gi|15 : ccaactggtaaatcatgatataccttaaaatagcagataaaaagtttcattttgatatattgatgtatataaatgtaacatatgcatgctgCTATGTTTTTTT-T-GTGAAAAC-TATCCATTATCCAT-A-ACTTTCTT-TAGATAC---T-TTAAA--GTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAACTTACACAG-AATACAACTGGTAAGTCATGATAtg
gi|16 : CAAATCAGTTGGAGTGAA------------AACTGACTTTTTTATGAACCAGTT--TTGCAACCACTTTTAGATTGCATTTTGTTCCATCTACTTTTGGCAG--------------AGTTA-------------TT---------G
gi|17 : GTT--TTGCAACAACTTT-GGGTTGCATTTAGTTCCATTGACTTTTGGCAGTGTTATTGCTCTTTAATTA-------------TTTTCAAACAAGTTTCTCAACAAATGATGTTATTATAGCAGgccattgattatttataatcaagtttctcaacaaatatgtcaccatagcaacca
gi|19 : ACTTTAAAATAGCAG-TATCAAAGAGTTTCATTTT-AAT------ATATTG---ATG------TAT------ATG------TAACt
gi|2 : GTTTTTTC-C-ACGAAACG-TATCCTTTATCCAT-ATATTTTTCT-T-----------CCA-A-TGTGAATGTA-------T-----CA----ATT-AAGTAAATTG--ATTATTTTTTCAGATTCTGA--C---TC--TG-----GAATTAAATTACACAGTAATACAACTGATAAATCATGATATATCAATATCATAAAATAGAAG-T--AAA-TAGTTTCATTATGAAT------ATATTA---ATG------TATACAA--ATG------TAACGTGGATAT------TGTGCATGATGCAATTATCCATAAAATG-GGA-CTTGTATTATTTATACCCAAATCAATATGAGTGGAAACGGACTTTTTA-------------TGTACCCGTT--TTGAAAACACTTTTGGGTCGCGCTCAGTTCCAGTGACTTTT-GCAG--------------AATTATTTTCCTTTAAATTT---------GTTTCTCAACAATTTATGTTTTT
gi|3 : CTATGTTTTTTT-TTGTGAAAAC-TATACATTATCCAT-A-ACTTTTTT-TAGATAC---T-TTA-A-TGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-TAGTTTCATTTTAAAT------AAATTA---ATG------TATACAA--AAG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATT-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAAGTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATGAGCCATTattgaagcca
gi|4 : CTATGTTTTTTT---ATGAAAAC-TATCCATTATCCAT-A-ACTTTTTT-TAGATAC---T-TTA-A-TGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATGGAACAAATTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAAGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCATCAGC
gi|5 : aTTTTTT-G-GTGAAATG-CATC--TT-TCCAT-A-ACTTTTTTATTTATTC---TTCCA-A-GGTGAATTAA-------T-----TG----TTG-AAGTAAACTG--ATTATTTTTTCAGATTACGG--C---TTCATGCAATAAAACTAAATTACACATTAATACAACTTGTAAATCATGATATACTGACACCTTAAAATAGCTG-T--AAA-GAGTTTCATTTT-GAT------ATATTG---ATGTATCGTTATATAA--ATG------TAACA-------------TGTGCATGCTGCAATT-T-----GAGTGAGAA-CTAGC-TTTTTTA----------AATA-------C------------A-------------TG------TT--TTGTAACCACTTTTGG
gi|5 : ---------GTTTCTCAACAAATTATGTTATTGTAGCAACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaagtttctcaacaaattatgttattgtagcaacca
gi|6 : ttttttggtgaaatgcatctttccataacttttttatttattcttccaaggtgaattaattgttgaagtaaactgattattttttcagattacggcttcatgcaataaaactaaattacacattaatacaacttgtaaatcatgatatactgacaccttaaaatagctgtaaagagtttcattttgatatattgatgtatcgttatataaatgtaacatgtgcatgctgcaatttgagtgagaactagcttttttaaatacatgttttgtaaccacttttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaCTATGTTTTTTT-T-GTGAAAAC-TATCCATTGTCCAT-A-ACTTTTTT-TAGATAC---T-TTA-A-TGTGAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTGTTCATATTATAGAACAAATTCATGCAACAAAACTTAATAACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAAAATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TACACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCAATAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTTGGGTCATGCTTAGT
gi|7 : aAATTTA-------T-----TA----ATT-AAGTAAACTGTGATAATTTTTTCATATTATGG--C---TTCATGCAACAAAACTAAATTACACAG-AATACAACTGGTAAGTCATGATATAATAATACCTTAATATAGTAG-T--CAA-GAGTTTCATTTTAAAT------ATATTA---ATG------TATACAA--ATG------TAACATGACAAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCCAAATCACTAGGAGTGGA------------A-------------TGTACTGGTT--TTGCAATCACTTTATGGTCATGCTTAGTTCAAATGACTTTT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATAATGTTTTTTCATCAGCCA
gi|8 : TTTTTT-T-ACAAAATG-TACCCCTTATTTATTA-CCTTTTTT-TAGGCAT---TACCAT--TGTGAATTTA-------T-----TACACTATTTAAGTAAACTTCGATTATTTTTTCATATTATGT--C---TTCATACAACAAATCTAAATTACATAGTAATACAACTGCTAAGTCGTGATAT-ATAACGC--------------T--TAA-GAGTTTCATTTTAAGTATAACAATATTA---ATG------TATACAGTCATA------TAA-ATAATTATAACTTCTGTGC-TG-TGC--TTATATATAg
gi|9 : AATAATACTTTAAAATAGTAG-T--CAA-AAGTTTCATTTTAAGT------ATATTA---ATG------TATACAA--ATG------TAACATGACTAT------TGTGCATGCTGCAATTATTCATAAAATG-GGA-CTTGCATTATTTATACCTAAATCAATAGGAGTGGA------------A-------------TGTACTGGTA--TTGCAATCACTTTTGGGTCATGCTTAGTTCAAATGAATATT-GCAG--------------AATTA-------------TT---------GTTTCTCAACAAATTATGTTTTTTCAGCAGCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACATGAATCAGTTGGATGAAAACTTACTTTTTTAAAATGTTTTACAGATGATCATTTTTTGAGCATCTT
Unaligned ( gi|20 ): GTTTTTTTTACAAAATGTATCCCTTATTTATTACCTTTTTT