lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 6666666666666666666 88888888888888888 1 1 22 11111 7777777777777777777777777777777777777777777 222 1 111111 3333333 222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 000000 3 3333333333333333333 99 3 0 44444444444444444 5 5 8 7 2 3 5 1 77 22222 1111111111111111111111111111111111111111111 77 5 000 2 0 0 3 5 5 7 444444 7777777 1 1 777 2 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 88 666 6
lowQualScore : ...... . ................... .. . . ................. . . . . . . . . .. ..... ........................................... .. . ... . . . . . . . ...... ....... . . ... . . .............................................................................................. .. ... .
lowQualScore : 000000 2 6666666666666666666 22 2 8 66666666666666666 0 7 7 3 1 7 3 4 66 55555 5555555555555555555555555555555555555555555 99 7 000 2 0 1 7 6 3 0 000000 8888888 9 0 444 0 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66 444 0
consensus : NNNNNNNNNNTTTAAAACACCAA---TTTCTGCATTCTACGTTC-----TA-T-AGCGT--TTAGGATAAAACAAGCTT----CTTAGGGATTCAAAT-CGGGTACCTCTTATGCACTGAAAATCC-ATAAA-----ACA-------A-CNCCTTG-G--TTTAAANCTCGTG-------TGAACTGACAATCCGT--A-A---CTTGCACACAACTCTGATTAACATCTCATTGTATGGATATACCATNNATTTAAAATATGTTANNCTGT-AAAAACATTCCAGTTAAT-GAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-ACAATG--T---------TG---------------------GTCAC-----------AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( gi|3 ) : ATTTTAATTTTTTAAAACACAAA---TTTCTGCATTCTGCATTC-----TA-----CGT--TTAGGATAAAACATGGTTTGGACATCGGGTTTCGAAT-CTGGCACCTTTCATGCAATGAAAGTCC-TTAAA-----ACA-------A-CACCTC-----TTTAAACCGTGTG-------TGAATTAACAATTTAT--A-A---CTTGCACACAGCTCTGATTAACATTTCATTATATGGGTATACTATACATTTAAAATATGTTACCCAGTGAAAAACATTCCAGTTACG-GAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-ACAATA--T---------TG---------------------ATCAG-----------AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAA
gi|4 : TTTAAAACACCAA---TTTCTGCAATCTACGTTC-----TATTAAGTGT--TTAGGATAAAACAAGCTT----CTTAGGGATTCAAAT-CAGGAACCTCTTATGCACTGATAATCC-ATAAA-----
gi|11 : ttgtaataTTTAAAAAAAAAACAATTTCTACATTCTACGTTC-----TA---------------GTAA---GTGTTTAGGA-A------TTCCAAT-CAGGTACCTGTTATGCATTGCAAACCC-ATAAACTCTTGCA-------G-CACCTcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|18 : ataTTTAAAACACCAA---TTTCTGCATTCT-----------TA-----CGT--Taactctgattaacttct
gi|6 : aattgttacaTTAAAACATTTG---TTT-TGTATTCTTTGTTC-----TAGTTAGTGT--TTAAGATAAAACAAACTC----CTTAGGGATTCAAAT-CGGGTACGTCTTATGCACTGAAAATCCATTAAC-----ACc
gi|10 : aatagTTAAAACACCAT---TATTTGCATTCTACGCTCTGGTATA-----AGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAAT-CGGGTACCTCTTATGCACTGAAAATCCATTAAA-----ttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : tataatgaGT--TTAGGATAAAACAAGCTT----CTTAGGGATTCAAAT-TGGGTAAATCTTATGCACTGAGAATCC-ATAAA-----ctctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|8 : gtGTTT---CACCGGGATT-GAATTCTGGTACCT--CATACACGAAAAGTAA---AAA-----ATA-------A-CACATTGCAT-TTTAAAAC----------------TTAACTATTTGC--A-A---CTTG------------ATTA-CATCTCATTGTATGGTTATACCAT-CAC---AAGC---TTATCATGTCAAAAAAACTCCACTTCAA-GAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---TATG--T---------TG----------------------TCAA-----------AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATAcacttgcatacagcactgattaacatctcattgtatagatatatcatcaatctaaaatatgttacagtaaaatgtagttaatgaatggtggtctgaaatgcatttatacgcaattgtttataatatcttgtgtaatgtaggtcactgcaatataacaagcactggacttacagccgccaggaataat
gi|1 : aagaaaaGGATTCAAAT-CTGATACTTCTTGTGCACTGAATGTCC---AAA-----ACCTCCTCCCA-CCCCCC-----ATTATAGTTTGAG-------TGAATTAACAATTTGT--A-A---CTTGTACACA-------------TCTCACTGTATGGATATAGCATAAATCTAAAATATGTTACTCTGTCAAAAACAATCCAGTAAAT-GAATGATT-------------------------------------------------T-ACAAT------------------------------------ATCAC-----------AAG--CACTG---GATTCACTGCCGCCAGGAATAATgcatgcagctgcag
gi|6 : TAAA-----ACA-------AACTCCTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAACA---CTTGCACAAAACTCTTATTATCATCTCATTGTATAGATATGCCACCAATTTAAAATATTTTACACTGT-AAAAGTATTCCAGGTAAT-GAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAACAGTA--T---------------------------------CC-------------AAG--CATTG---GATTCGCtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|5 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagaCA-------A-TCCCTT-----TTAAAACT---TG-------TGAATAAACACTTTAT--A-A---ATTGCACATACCTCTGATAAGCATATCATTGTATGGATGTAACATACATTTAAACTGTGTTAACCTGTCAAAAGCATTCCCATT-CGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-ACAA---------------A---------------------GTCAC-----------AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|7 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactTAAATCTTATG-------C--ACTGAGAATCCAT--A-AACACTTGCATACAGCACTGATTAACATCTCATTGTATAGATATATCATCAATCTAAAATATGTTA--CAGT--AAAATGT---AGTTAAT-GAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCT---------TGTGTAATGTAGGTCACTGCAATATAAC-----------AAG--CACTG---GACTTACAGCCGCCAGGAATAATtagtgtgaagctaca
gi|4 : gtgtttaggataaaacaagcttcttagggattcaaattgggAACCTCTTA-------TGCACTGATAATCCAT--A-AACATTTGCACGCAACTCTGAATAACATCTCATTCTATAGATAAACCATTCACTTAAAATATGTTACCCTGT-AAAAACATTCCAATCAAT-GAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-ACACTACCT---------TGTGTA-----------------AT--G-----------AAGATCACTGCAAGATTCG
gi|14 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggataaaacaagcttcttagggattcaaatcaggGAATTAACAATTTAT--G-A---CTTTCACATAACTCCAGTTGACATCTCATTATAAGGATATA----ACATTTA----ATGTTA
gi|9 : CACATAACTCTGATTAACATCTCATTGTAAAGATATACCAT-CAATTAAAATATTTTAAACTAT-ATAAACGTTCCAGATAAT-GAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-ATAATG--T---------AG---------------------GTCAATGTAATATAACAAG--CACTG---GGTTCCCTGCTGCCAGGAATAATttc
gi|10 : attgtaatacataaaacaccatttttatactttctagtaagtgttcaggataaaaAACTCTGATTAACATTTCATTGTATAGATATATTATCAATTTGAAATGTGTTAAACTGTAAAAAA-A-TACAGTTAAT-GAACGATTGTC
gi|2 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgataaaacaagcttcttaggaatttaaatcgggtacctcttatgcactgaaaatccattaTATAACACAAATTTGA--TATATTA---AA-AAAAAACATTCCAGTCAGT-GAGTGTTTGTCTGAA-------------------------TGGTT------------T-CCAATG--T----------------------------------CAC-----------ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|12 : -GAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-ACAATA--TCCAGTATAATGCAA------------------GTCAGTGAAATATAACAAG--CACTG---GGTTCGCTGCTGCCAGGAATAATtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|16 : ---------------------ATCAC-----------AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaat-----------AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444 1111 222222222 88888888888888888888888 1111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 88888888888 3 1 4444 444 5 777777777 1 99999999999999999999999 1 1 2 2 5 8888 7777 2 1 2 4 55 3 22 0 6 2 0 77777 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 77 555
lowQualScore : . . . ........... . . .... ... . ......... . ....................... . . . . . .... .... . . . . .. . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 55555555555 3 0 2222 222 3 222222222 0 00000000000000000000000 1 7 7 9 2 8888 4444 3 3 4 3 55 6 00 9 0 4 9 66666 55 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCT---AG-T--AAGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACA-------AGCTCCTTAGGGATTTAAANCGGG-AC-TCTTGTGAACTGACAATCCAT--A-A---CTTGCACACAACTCTGATTAACATCTCATTGTATGGATATACCATNAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCT---A--T--A-GCGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCGGGTACCTCTTATGCACTGAAAATCCATAAAACA-------A-CNCCTTGG---TTTAAANC-------TCGTGTGAACTGACAATCCGT--A-A---CTTGCACACAACTCTGATTAACATCTCATTGTATGGATATACCATNNATTTAAAATATG-TTANNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAACCTCCTCCCA-CCCCCCA-----TTATAGT-------TTGAGTGAATTAACAATTTGT--A-A---CTTGTACACA-------------TCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTA--T--AAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACA-------AGCTTCTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCAT--T-A------------AACTCTGATTAACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCT---AG-T--AAGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|12 : atatttaaaGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAATctcttgcagcacctaactctgattaacttct
gi|14 : GAATTAACAATTTAT--G-A---CTTTCACATAACTCCAGTTGACATCTCATTATAAGGATATA----ACATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGAA-------------------------TGGTT------------T-C------------CA--ATGT----------------C-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCT---A--------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACA-------A-CACCTC-----TTTAAACC-------GTGTGTGAATTAACAATTTAT--A-A---CTTGCACACAGCTCTGATTAACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCT---A--TTAA-GTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACA-------AGCTTCTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCAT--A-AACATTTGCACGCAACTCTGAATAACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggCA-------A-TCCCTT------TTAAAAC-------T--TGTGAATAAACACTTTAT--A-A---ATTGCACATACCTCTGATAAGCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactTTAAAACATTTGTTT-TGTATTC-TTTGTTCT---AGTT--A-GTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACA-------AACTCCTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAACA---CTTGCACAAAACTCTTATTATCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACA-------AGCTTCTTAGGGATTCAAATTGGGTAAATCTTATGCACTGAGAATCCAT--A-AACACTTGCATACAGCACTGATTAACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATA-------A-CACATTGCAT-TTTAAAAC-------TT-----AACT--------------A---TTTGCA----ACT-TGATTA-CATCTCATTGTATGGTTATACCATC--------ACAAGCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCT---AG-T--AAGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCACATAACTCTGATTAACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 222222222 555555555 2222 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 2 99 1 4444 444 1 0 000000000 3 00 5 2 3 000000000 4 3 1 4 7777 1111 3 666 0 1 2 2 2 3 33 0 6 2 0 77777 55 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 77 555
lowQualScore : . . . . .. . .... ... . . ......... . .. . . . ......... . . . . .... .... . ... . . . . . . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 5 22 0 2222 222 0 1 000000000 2 44 0 8 4 555555555 4 0 4 1 0000 7777 6 222 4 4 0 3 1 6 00 9 0 4 9 66666 55 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCC---------TTAGGGATTC-AAATCGGGT-A--C-TCTTATGNACTGANAATCCAT--A-A---CTTGCA-CAC--AACTCTGATTAACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCC---------TTAGGGATTT-AAANCGGG--A--C-TCTTGTGAACTGACAATCCAT--A-A---CTTGCA-CAC--AACTCTGATTAACATCTCATTGTATGGATATACCATNAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAACCTCCTCCCACCCCCCATTATAG-TTT-GA-----------------GTGAATTAACAATTTGT--A-A---CTTGTA-CAC--A-------------TCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTATAAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACAAGCTTC---------TTAGGAATTT-AAATCGGGT-A--CCTCTTATGCACTGAAAATCCAT--T-A---------------AACTCTGATTAACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCTAGTA--AGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|11 : atatttaaa---------TTAGGAATTC-CAATCAGGT-A--CCTGTTATGCATTGCAAACCCAT--A-AACTCTTGCAGCACCTAACTCTGATTAACTTCTctcttgcagcacctaactctgattaacttct
gi|12 : atatttaaaaaaaaaacaatttctacattctacgttctagtaagtgtGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAAT
gi|14 : GAATTAACAATTTAT--G-A---CTTTCA-CAT--AACTCCAGTTGACATCTCATTATAAGGATATAAC----ATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGA----------------------A---TGGTT------------T-C------------CA--AT----------------GTC-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCTA-------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACAA-CACC---------TC-----TTT-AAACCGTG----------TGTGAATTAACAATTTAT--A-A---CTTGCA-CAC--AGCTCTGATTAACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCTATTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACAAGCTTC---------TTAGGGATTC-AAATCAGG--AACC-TCTTATGCACTGATAATCCAT--A-AACATTTGCA-CGC--AACTCTGAATAACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggCTTGTGAATAAACACTTTAT--A-A---ATTGCA-CAT--ACCTCTGATAAGCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactcaatcccttttaaaaTTAAAACATTTGTTT-TGTATTC-TTTGTTCTAGTT--AGTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACAAACTCC---------TTAGGGATTC-AAATCGGGT-A--CGTCTTATGCACTGAAAATCCATTAACA---CTTGCA-CAA--AACTCTTATTATCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACAAGCTTC---------TTAGGGATTC-AAATTGGGTAA--A-TCTTATGCACTGAGAATCCAT--A-AACACTTGCA-TAC--AGCACTGATTAACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATAA-CACA---------TT--GCATTTTAAAAC------------TT---AACT--------------A---TTTGCA-------ACT-TGATTA-CATCTCATTGTATGGTTATACCATCA---CAA-----GCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCTAGTA--AGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCA-CAT--AACTCTGATTAACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 11111 33 222222222 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 2 99 1 4444 444 1 0 0 8888 22222 44 33 4 1 1 1 555555555 3 666 0 2 2 2 3 33 0 6 2 0 77777 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 77 555
lowQualScore : . . . . .. . .... ... . . . .... ..... .. .. . . . . ......... . ... . . . . . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 5 22 0 2222 222 0 1 4 4444 55555 88 88 4 0 4 0 555555555 6 222 4 0 8 1 6 00 9 0 4 9 66666 55 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAA-----ATCGGGTACCTCTTA-TGNACTGANAATCCAT--A-A---CTTGCA-CAC--AACTCTGATTAACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAA-----ATCGGGTAC-TCTTA-TGNACTGANAATCCAT--A-A---CTTGCA-CAC--AACTCTGATTAACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAAC---CTCCTC------CCACCCCCCATTA--TAG-TTTGAGTGAATTAACAATTTGT--A-A---CTTGTA-CAC--A-------------TCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTATAAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACAAGCTTCTTAGGAATTTAA-----ATCGGGTACCTCTTA-TGCACTGAAAATCCAT--T-A---------------AACTCTGATTAACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCTAGTA--AGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|11 : atatttaaaTTAGGAATTCCA-----ATCAGGTACCTGTTA-TGCATTGCAAACCCAT--A-AACTCTTGCAGCACCTAACTCTGATTAACTTCTctcttgcagcacctaactctgattaacttct
gi|12 : atatttaaaaaaaaaacaatttctacattctacgttctagtaagtgtGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAAT
gi|14 : GAATTAACAATTTAT--G-A---CTTTCA-CAT--AACTCCAGTTGACATCTCATTATAAGGATATAAC----ATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGAA-------------------------TGGTT------------T-C------------CA--ATGT----------------C-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCTA-------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACAA-CACCTC-----TTTAA-----ACCGTGTG--------TGAATTAACAATTTAT--A-A---CTTGCA-CAC--AGCTCTGATTAACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCTATTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACAAGCTTCTTAGGGATTCAA-----ATCAGGAACCTCTTA-TGCACTGATAATCCAT--A-AACATTTGCA-CGC--AACTCTGAATAACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggCTTG-TGAATAAACACTTTAT--A-A---ATTGCA-CAT--ACCTCTGATAAGCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactcaatcccttttaaaaTTAAAACATTTGTTT-TGTATTC-TTTGTTCTAGTT--AGTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACAAACTCCTTAGGGATTCAA-----ATCGGGTACGTCTTA-TGCACTGAAAATCCATTAACA---CTTGCA-CAA--AACTCTTATTATCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACAAGCTTCTTAGGGATTCAA-----ATTGGGTAAATCTTA-TGCACTGAGAATCCAT--A-AACACTTGCA-TAC--AGCACTGATTAACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATAA--------------CAC-----ATT--GCA--TTTTA--AAACT--TAA-CTAT---------TTGC-------AACT-TGATT-ACATCTCATTGTATGGTTATACCATCA---CAA-----GCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCTAGTA--AGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCA-CAT--AACTCTGATTAACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 222222222 111111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 2 99 1 4444 444 1 0 0 77777 22 0 2 4 1 666 777777777 333333 3 2 2 2 3 33 0 6 2 0 77777 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 77 555
lowQualScore : . . . . .. . .... ... . . . ..... .. . . . . ... ......... ...... . . . . . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 5 22 0 2222 222 0 1 4 22222 88 2 5 4 0 555 111111111 888888 6 0 8 1 6 00 9 0 4 9 66666 55 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCAT--A-A---CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCAT--A-A---CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAAC---CTCCT--------CCCACC-----CCCCATTATAGTTTGAGTGAATTAAC--A-A---TTTGTA-------ACT-TG--TACACATCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTATAAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACAAGCTTCTTAGGAATTTAAATCGGGTACCTC-TTATGCACTGAA--AATCCAT--T-A---------------AACTCTGATTA-ACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCTAGTA--AGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|11 : atatttaaaTTAGGAATTCCAATCAGGTACCTG-TTATGCATTGCA--AACCCAT--A-AACTCTTGCAGCACCTAACTCTGATTA-ACTTCTctcttgcagcacctaactctgattaacttct
gi|12 : atatttaaaaaaaaaacaatttctacattctacgttctagtaagtgtGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAAT
gi|14 : GAATTAAC--AATTTAT--G-A---CTTTCA-CAT--AACTCCAGTTG-ACATCTCATTATAAGGATATAAC----ATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGAA-------------------------TGGTT------------T-C------------CA--ATGT----------------C-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCTA-------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACAA-CACCTC-----TTTAAACCGTGTG--------TGAATTAAC--AATTTAT--A-A---CTTGCA-CAC--AGCTCTGATTA-ACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCTATTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACAAGCTTCTTAGGGATTCAAATCAGGAACCTC-TTATGCACTGAT--AATCCAT--A-AACATTTGCA-CGC--AACTCTGAATA-ACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggC-TTGTGAATAAAC--ACTTTAT--A-A---ATTGCA-CAT--ACCTCTGATAA-GCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactcaatcccttttaaaaTTAAAACATTTGTTT-TGTATTC-TTTGTTCTAGTT--AGTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACAAACTCCTTAGGGATTCAAATCGGGTACGTC-TTATGCACTGAA--AATCCATTAACA---CTTGCA-CAA--AACTCTTATTA-TCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACAAGCTTCTTAGGGATTCAAATTGGGTAAATC-TTATGCACTGAG--AATCCAT--A-AACACTTGCA-TAC--AGCACTGATTA-ACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATAA--------------CACATTG----CATT-TTA-AAACT--T--AA-CTAT---------TTGCA-------ACT-TGATTA--CATCTCATTGTATGGTTATACCATCA---CAA-----GCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCTAGTA--AGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCA-CAT--AACTCTGATTA-ACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 222222222 111111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 2 99 1 4444 444 1 0 0 77777 22 0 2 4 1 666 777777777 333333 3 2 2 2 3 33 0 6 2 0 77777 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 77 555
lowQualScore : . . . . .. . .... ... . . . ..... .. . . . . ... ......... ...... . . . . . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 5 22 0 2222 222 0 1 4 22222 88 2 5 4 0 555 111111111 888888 6 0 8 1 6 00 9 0 4 9 66666 55 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCAT--A-A---CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCAT--A-A---CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAAC---CTCCT--------CCCACC-----CCCCATTATAGTTTGAGTGAATTAAC--A-A---TTTGTA-------ACT-TG--TACACATCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTATAAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACAAGCTTCTTAGGAATTTAAATCGGGTACCTC-TTATGCACTGAA--AATCCAT--T-A---------------AACTCTGATTA-ACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCTAGTA--AGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|11 : atatttaaaTTAGGAATTCCAATCAGGTACCTG-TTATGCATTGCA--AACCCAT--A-AACTCTTGCAGCACCTAACTCTGATTA-ACTTCTctcttgcagcacctaactctgattaacttct
gi|12 : atatttaaaaaaaaaacaatttctacattctacgttctagtaagtgtGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAAT
gi|14 : GAATTAAC--AATTTAT--G-A---CTTTCA-CAT--AACTCCAGTTG-ACATCTCATTATAAGGATATAAC----ATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGAA-------------------------TGGTT------------T-C------------CA--ATGT----------------C-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCTA-------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACAA-CACCTC-----TTTAAACCGTGTG--------TGAATTAAC--AATTTAT--A-A---CTTGCA-CAC--AGCTCTGATTA-ACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCTATTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACAAGCTTCTTAGGGATTCAAATCAGGAACCTC-TTATGCACTGAT--AATCCAT--A-AACATTTGCA-CGC--AACTCTGAATA-ACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggC-TTGTGAATAAAC--ACTTTAT--A-A---ATTGCA-CAT--ACCTCTGATAA-GCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactcaatcccttttaaaaTTAAAACATTTGTTT-TGTATTC-TTTGTTCTAGTT--AGTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACAAACTCCTTAGGGATTCAAATCGGGTACGTC-TTATGCACTGAA--AATCCATTAACA---CTTGCA-CAA--AACTCTTATTA-TCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACAAGCTTCTTAGGGATTCAAATTGGGTAAATC-TTATGCACTGAG--AATCCAT--A-AACACTTGCA-TAC--AGCACTGATTA-ACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATAA--------------CACATTG----CATT-TTA-AAACT--T--AA-CTAT---------TTGCA-------ACT-TGATTA--CATCTCATTGTATGGTTATACCATCA---CAA-----GCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCTAGTA--AGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCA-CAT--AACTCTGATTA-ACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
blockSeqs : A C T G . G TGGA ATC G G TAGGA GG C . C A AAACTC GCACCT . T C A C AA G T CAC GA ACACTTGTTAACAATATCCAGTATAATGCAAGTCAGTGAAATATAA G AT CAA
blockSeqs : A C . T . C . TTA A G TAGGA AG C . C A AAACAT CAT . A A A . TT C T CAA . GCAATTGTTTATAATATCTTGTGTAATGTAGGTCACTGCAATATAA . T .
blockSeqs : A C . G . C . TTA T A TAGGG GT C . A C TAACAC CAC . A A A . AA C T C . ACACTTGTTAATAATATCCAGTATAATGTAGGTCAATGTAATATAA . . .
blockSeqs : A C . G . T . ACC A G TAGGG AG G . A C AAACAC CGC . C T A . CC . T C . ACAGCTGTTTACACTACCTTGTGTAA . . .
blockSeqs : G . . . . . . . G . TAGGG GG A . C T GAC CAT . C A A . CC . T C . ATTGTTTACAATATTGATCA . . .
blockSeqs : . . . T . C GG A . A C AAC CAA . A C A . AC . C T . GCAACTGTTTACAAAGTCA . . .
blockSeqs : . G . . C A AAA TAC . C C A . CA . T C . AAGTGTTTTATGTTGTCA . . .
blockSeqs : . C G TA CAT . T C . . CA . . C . TGGTTTCCAATGTCA . . .
blockSeqs : A T . . . C C . . TC . . . . AGGTGTAACAGTATC . . .
blockSeqs : . . C . . . AA . . .
blockSeqs : . . .
blockSeqCons : ** TAGGG GG N** AAACC**** CAC*** C****
originalCons : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCAT--A-A---CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
finalCons : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCATAAACC----TTGCACAC---AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATTC----AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 3333 111111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 3 6 5 2 99 1 4444 444 1 0 0 77777 22 0 2 4 1 666 2 4444 111111 3 2 2 2 3 33 0 6 2 0 77777 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 77 555
lowQualScore : . . . . .. . .... ... . . . ..... .. . . . . ... . .... ...... . . . . . .. . . . . ..... .. ....................................................................................... . .. ...
lowQualScore : 9 6 7 5 22 0 2222 222 0 1 4 22222 88 2 5 4 0 555 6 8888 555555 6 0 8 1 6 00 9 0 4 9 66666 55 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 99 888
consensus : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCATAAAC-CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
Reference ( family-2001 ) : NNNNNNNNNNTTTAAAACACCAATTTCTGCATTC-TACGTTCTAGTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAAAGTCCATAAAACAAGCTCCTTAGGGATTCAAATCGGGTACCTC-TTATGNACTGAN--AATCCATAAAC-CTTGCA-CAC--AACTCTGATTA-ACATCTCATTGTATGGATATACCATCAATTTAAAATATG-TTACNCTGT-AAAAACATTCCAGTTAATGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATGT---------TG---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATA
gi|1 : GGATTCAAATCTGATACTTCTTGTGCACTGAATGTCCA--AAAC---CTCCT--------CCCACC-----CCCCATTATAGTTTGAGTGAATTAACAA---TTTGTA-------ACT-TG--TACACATCTCACTGTATGGATATAGCATAAATCTAAAATATG-TTACTCTGTCAAAAACAATCCAGTAAATGAATGAT-------------------------------------T------------T-A------------CA--AT----------------ATC-----------A-----------C-AAG--CACTG---GATTCACTGCCGCCAGGAATAAT
gi|10 : TTAAAACACCATTATTTGCATTC-TACGCTCTGGTATAAGTGATTATGATAAAACAAGCTT----CTTAGGAATTTAAATCGGGTACCTCTTATGCACTGAAAATCCATTAAACtagtgtgcatgtacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaagagtcaacccaccccgctcctaagcatttgctttcgtatgtacagaaaaaataccta
gi|10 : tataatgaATAAAACAAGCTTCTTAGGAATTTAAATCGGGTACCTC-TTATGCACTGAA--AATCCATTAA---------------ACTCTGATTA-ACATTTCATTGTATAGATATATTATCAATTTGAAATGTG-TTAAACTGT-AAAAAAA-TACAGTTAATGAACGATTGTCtctgattaacatttcattgtatagatatattatcaatttgaaatgtgttaaactgtaaaaaaatacagttaatgaacgattgtc
gi|11 : tataatgattaaaacaccattatttgcattctacgctctggtataagtgattatgAAAAAAACAATTTCTACATTC-TACGTTCTAGTA--AGTGTTTAGGA-----------------------ATTCCAATCAGGTACCTGTTATGCATTGCAAACCCATAAA
gi|11 : atatttaaaTTAGGAATTCCAATCAGGTACCTG-TTATGCATTGCA--AACCCATAAACTCTTGCAGCACCTAACTCTGATTA-ACTTCTctcttgcagcacctaactctgattaacttct
gi|12 : atatttaaaaaaaaaacaatttctacattctacgttctagtaagtgtGAATAGTTGTCTGAAATTCATT--C--AC--AC---ACACTTGTT------------A-A------------CA--ATATCCAGTATAATGCAAGTC-----------AGTGAAATATAAC-AAG--CACTG---GGTTCGCTGCTGCCAGGAATAAT
gi|14 : GAATTAAC--AATTTATGA---CTTTCA-CAT--AACTCCAGTTG-ACATCTCATTATAAGGATATAAC----ATTTA----ATG-TTATTC
gi|16 : TC-----------A-----------C-AAG--CACTG---GATTTACTGCTGTCGGGAATAAT
gi|17 : gtgactgcaata-----------A-----------C-AAG--CACTG---GATTCGCTGCCGCCAGGAATAATt
gi|18 : tcactgccgtaaaTTTAAAACACCAATTTCTGCATTCTTACGTTCt
gi|2 : aattgttacaTATAACACAAATTTGA--TATA-TTAAAA----AAAAACATTCCAGTCAGTGAGTGTTTGTCTGAA-------------------------TGGTT------------T-C------------CA--ATGT----------------C-----------A-----------C-ACG--CACTG---GATTCGGAGCCGCCAGGAATGAT
gi|3 : TTTAAAACACAAATTTCTGCATTC-TGCATTCTA-------CGTTTAGGATAAAACATGGTTTGGACATCGGGTTTCGAATCTGGCACCTTTCATGCAATGAAAGTCCTTAAAACAA-CACCTC-----TTTAAACCGTGTG--------TGAATTAAC--AATTTATAA---CTTGCA-CAC--AGCTCTGATTA-ACATTTCATTATATGGGTATACTATACATTTAAAATATG-TTACCCAGTGAAAAACATTCCAGTTACGGAATGGTTGTCTGAAATTCATT--C--AT--AC---A---TTGTT------------T-A------------CA--ATAT---------TG---ATC-----------A-----------G-AAG--CACTG---GATTCGCTGCCGCCAGAAATAATAtagtgtgcatctacagtgtttatatagatacaacctacttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttaacccgccccggctcccacgcctttgctttaatgtgtacagaaaataacatttattaatgttttcatcggaggtaaatgaacgatataaccgtaacgattctattattttaacaataacctaaaacaacagtaaatcaattatccaggta
gi|4 : attttaatttTTTAAAACACCAATTTCTGCAATC-TACGTTCTATTA--AGTGTTTAGGATAAAACAAGCTT----CTTAGGGATTCAAATCAGGAACCTCTTATGCACTGATAATCCATAAAa
gi|4 : ttgtaataATAAAACAAGCTTCTTAGGGATTCAAATCAGGAACCTC-TTATGCACTGAT--AATCCATAAACATTTGCA-CGC--AACTCTGAATA-ACATCTCATTCTATAGATAAACCATTCACTTAAAATATG-TTACCCTGT-AAAAACATTCCAATCAATGAATGGTTGTCTGAAAATAATTCAC--AT--AC---ACAGCTGTT------------T-A------------CACTACCT---------TGT--GTA-----------A-----------TGAAGATCACTGCAAGATTCGcatttgcacgcaactctgaataacatctcattctatagataaaccattcacttaaaatatgttaccctgtaaaaacattccaatcaatgaatggttgtctgaaaataattcacatacacagctgtttacactaccttgtgtaatgaagatcactgcaagattcg
gi|5 : ttgtaatatttaaaacaccaatttctgcaatctacgttctattaagtgtttaggC-TTGTGAATAAAC--ACTTTATAAA---TTGCA-CAT--ACCTCTGATAA-GCATATCATTGTATGGATGTAACATACATTTAAACTGTG-TTAACCTGTCAAAAGCATTCCCATTCGTGAATGGTTGTCTAAAATTCACT--C--AT--ACGCAA---CTGTT------------T-A------------CA--A-------------A---GTC-----------A-----------C-AAG--CACTG---GATTCGCTGTCATCAGGAAGAAT
gi|6 : tttcaaacctaatcttgtttacgataatatcgaaagtaaatcactcaatcccttttaaaaTTAAAACATTTGTTT-TGTATTC-TTTGTTCTAGTT--AGTGTTTAAGATAAAACAAACTC----CTTAGGGATTCAAATCGGGTACGTCTTATGCACTGAAAATCCATTAAtagtgtgaagctaca
gi|6 : aatagATAAAACAAACTCCTTAGGGATTCAAATCGGGTACGTC-TTATGCACTGAA--AATCCATTAACACTTGCA-CAA--AACTCTTATTA-TCATCTCATTGTATAGATATGCCACCAATTTAAAATATT-TTACACTGT-AAAAGTATTCCAGGTAATGAATGGTTGTCTGATATTTATT--CAAAT--AC---A----GGTG------------TAA------------CA--GTAT---------C------------------------------C-AAG--CATTG---GATTCGCcacttgcacaaaactcttattatcatctcattgtatagatatgccaccaatttaaaatattttacactgtaaaagtattccaggtaatgaatggttgtctgatatttattcaaatacaggtgtaacagtatccaagcattggattcgc
gi|7 : aatagttaaaacatttgttttgtattctttgttctagttagtgtttaagATAAAACAAGCTTCTTAGGGATTCAAATTGGGTAAATC-TTATGCACTGAG--AATCCATAAACACTTGCA-TAC--AGCACTGATTA-ACATCTCATTGTATAGATATATCATCAATCTAAAATATG-TTACA--GT-AAAA----TGTAGTTAATGAATGGTGGTCTGAAATGCATT--T--AT--ACGCAA---TTGTT------------T-ATAATATCTTGTGTA--ATGT---------AG---GTCACTGCAATATAA-----------C-AAG--CACTG---GACTTACAGCCGCCAGGAATAAT
gi|8 : gtgtttaggAAGAAAAGTTT----CACCGGGATTGAATTCTGGTACCTC--ATACACGAAAAGT--AAAAAATAA--------------CACATTG----CATT-TTA-AAACT--T--AA-CTAT------TTGC-------AACT-TGATT--ACATCTCATTGTATGGTTATACCATCA---CAA-----GCTTATCATGTCAAAAAAACTCCACTTCAAGAATGGTTGTTTGAATTTCATT--C--ATGAACA--A---GTGTT------------T---------------T--ATGT---------T----GTC-----------A-----------A-AAAT-CATTA---GATTCGCCTACGCCAGGAAAAATA
gi|9 : TAAAACACCA-TTT-----TTA-TACTTTCTAGTA--AGTGTTCAGGATAAAACAgcatgcagctgcag
gi|9 : attgtaatacaCA-CAT--AACTCTGATTA-ACATCTCATTGTAAAGATATACCATCAATT-AAAATATT-TTAAACTAT-ATAAACGTTCCAGATAATGAATAGTTGTCTGAAATTCATT--C--AT--AC---ACACTTGTTAATAATATCCAGT-A------------TA--ATGT---------AG---GTCAATGTAATATAA-----------C-AAG--CACTG---GGTTCCCTGCTGCCAGGAATAATcataactctgattaacatctcattgtaaagatataccatcaattaaaatattttaaactatataaacgttccagataatgaatagttgtctgaaattcattcatacacacttgttaataatatccagtataatgtaggtcaatgtaatataacaagcactgggttccctgctgccaggaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CCCGCTCGGCTGCTACGCATTTGCCTTCATGTGTGTACAGACAAAAAATAGATGTGACACAATTTCATCGGCGGTAAATTAACATTA
Unaligned ( gi|15 ): CACCCGCCCCAGCTTCTACACCTTTCCTTTCATGTGTACAGAAAATAACATTTATTAC