lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          22222222222222222222222222222222222222222222                                                                                                                                                                                           111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                  00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           22       1               2     33333333    22222     2       1                                                                                                                                                                                                                                                                     2          222                        22    44444444444444444444444444444444444444444444                        55555                       2      55555        33333333                4444444    33        44444444444444                    1              1             222    222222222222222222222222222222222222222222222222          1111111   3333333    22                       111           2222222  111        11111     22222222222                                    555555555555555555                      2222222           1111  6666666666666666               555555555555555555555555555555555555555555555555555555555555              1111111111                          1111        111              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                  11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    2      77       5             2 0     55555555    77777     0       5                                                                                                                                                                                                                                                       4     3       0   4      111             55 4       77    44444444444444444444444444444444444444444444 2      3  4  77     77 00000         2   2   4     0  2   00000  2     55555555       7        5555555    66        11111111111111           6     88 3     6        3 7 7  0      333    666666666666666666666666666666666666666666666666 7        5555555   1111111 0  11  888   6              222    5   7  3333333  444     7  44444     33333333333  4 4   6 8   4      1  555    55 3 555555555555555555  44            555 3 6666666      3    3333  6666666666666666            3  999999999999999999999999999999999999999999999999999999999999   99999  5 1 9999999999   3             5 888  8 8888        555              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                  .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .      ..       .             . .     ........    .....     .       .                                                                                                                                                                                                                                                       .     .       .   .      ...             .. .       ..    ............................................ .      .  .  ..     .. .....         .   .   .     .  .   .....  .     ........       .        .......    ..        ..............           .     .. .     .        . . .  .      ...    ................................................ .        .......   ....... .  ..  ...   .              ...    .   .  .......  ...     .  .....     ...........  . .   . .   .      .  ...    .. . ..................  ..            ... . .......      .    ....  ................            .  ............................................................   .....  . . ..........   .             . ...  . ....        ...              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                  00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    5      55       5             5 0     00000000    55555     0       5                                                                                                                                                                                                                                                       0     0       0   0      000             00 0       55    00000000000000000000000000000000000000000000 5      0  0  00     00 00000         5   5   0     0  5   00000  5     00000000       3        7777777    77        33333333333333           7     33 3     7        3 3 0  7      333    000000000000000000000000000000000000000000000000 3        0000000   2222222 6  44  888   7              555    0   6  1111111  999     1  66666     44444444444  4 4   4 2   0      2  888    44 3 888888888888888888  66            888 3 2222222      3    8888  8888888888888888            6  888888888888888888888888888888888888888888888888888888888888   00000  1 6 5555555555   6             0 888  0 4444        555              
consensus                     : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTNTGTCAGAATCGTCCTTACTGAATAGCATTNTATTGAAATATAGCCTTTTATTAATCACGCAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTNGAATANCTCAATGACAANACATACCTTAAACAAACCAATTNNANCGATGGAACTATAGCATTAAACATCAATCAATGTTTACATACATTCGATGCAAGTGAANATTTGANAGNAANNTAAAANNGGGCAATGTATATTTNATTNATTNAAAGCCGANCAAACGCGCANTTTAAGTAATCCGTCACAAATATTTAATA------ATTTGGTACAACCAACGCCAGTTC-A---ATACATGCCAGTCAATACGA-AACAGCTTTTTGCT-TTACATTTTCCGA---AACG--A-----AACNTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTC-TT-CGGTCAGCGTTGACCTACTG--NAGAACATTNTAN-CGA-ATTTC-TCATGNAA-ACGTTTTTTT---CC--T--AA-T-GCGCACGTG-CAAAACGTG---GTTTCNG-T-C-ATA-AAAGTCGGATNTT--TTTCATGGTTCA---A-TA--GT--TTTGAT-TTTT---AAA----TC----GTAT-TAGTGTAGATTTT-AT------G------AA--AGA-AATTTTGATA--GT-AG--AGTTT--AGNATAAA---A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-A---ATTATAAAAGTGTTGCG-NATTTAAAGTCTGGG
Reference ( gi|1 )            : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACA----------TT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-----CACTTTAAGTAATCCGTCACAAATATTTAATA------ATTTG--ACAACCAACGCCAGTTTGATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA---AACG--A-----AACCTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTCCTT-CAGTCCGCGTTGACCTACTG--CAGAATATTGTAA-CAA-GTTAC-TCATATAA-ACGTTTTTTT---CC--T--AA-T-GCACACGTG-CAAAACATG---GTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTCA---A-TG--GT--TTTGAT-TTTT---CAA---TTC----GTATACAGTGTAGATTTT-AT------G------AA--AGA-AATTTTAATT--GT-AG--AGATT--AGCACAAA---A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-A---ATAACGATAGTGTTGCG-AATTTAAAGTCTGGG
gi|2                          : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-----CACTTTAAGTAATCCGTCACAAATATTTAATA------ATTTG--ACAACCAACGCCAGTTTGATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA---AACG--A-----AACCTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTCCTT-CAGTCCGCGTTGACCTACTG--CAGAATATTGTAA-CAA-GTTAC-TCATATAA-ACGTTTTTTT---CC--T--AA-T-GCACACGTG-CAAAACATG---GTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTCA---A-TG--GT--TTTGAT-TTTT---CAA---TTC----GTATACAGTGTAGATTTT-AT------G------AA--AGA-AATTTTAATT--GT-AG--AGATT--AGCACAAA---A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-A---ATAACGATAGTGTTGCG-AATTTAAAGTCTGGG
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTATGTCAGAATTGTCCT-ACTGAATAACATTTTATTGAA--------TTTT-----TCATGCAAATAAT-TTTTATGC
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  agacctatgcagtaaaaattcacaaaatttaatattcaatatttggtacaatcaccgtcagttctaatacaggccagtcagaatgacgatagcatatagcctacattttccaaagcgtgaggcattctaaatgctatctgcactattattcagaaacttattttattaacaagtgtACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATG----------TTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAACGCGCAGTTTAA----T---TCACTTATATTCAATA-------TTTGGTATAACTAA--------------ATACATGTCAGTCAATAATA-AACCG-TGTTTACTATTACAGTTTCCGAGTCAACA--AGAGTCAATTTTCG---------TAA-------ATGCTATCTATTTG-CACTAATTTGGTAACGTT-----GATGTTCTTTTCGGTCAGCGTTAACCTATTGAACAGCATTTTATAG--AA-TTTCT-TCATA--A-CCATCATTTT---CC--TGTAA-T-GCGTA-GTATCAAAACATA---GTTTCGG-T-C-A----------GGTCTT--CTTCAGTGTTCA---A-T---AT--TTTGAA-TTTT---AAA----TC----TTGTGTAGGGTCGATTTT-AT------G------CG--AGATAATTTGAA-A--GTAAG--AGTTTTAATTAAATA---A-AAT---C-ATGTTT---T------AATAAAAGATCTAATTG-A---ATaatgtgcaaaactaggtttagccttttcatggttcaataattttgatatttaaaacttaagtgtagattttatgctggagaatagaaagttgatagtcagtttaaaatagaataaatatatttaat
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            cTCACAAA-ATTTAATATTCAATATTTGGTACAATCACCGTCAGTTCTA---ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA---AGCGTGA-----GGCATTCTAAATGCTATCTGCACTATTATT-----CA---GAAACTTATT--TT---ATTAACAAG-TGTT--TT-ATGTCAGAATTGTCCTACTG--AATAACATTTTAT-TGA-ATTTT-TCATGCAA-ATAATTTTT------------A-T-GCA-ATGTG-CAAAACTAG---GTTT--------------AGC------CT--TTTCATGGTTCA---A-TA--AT--TTTGAT-ATTT---AAA----AC----TTA---AGTGTAGATTTT-ATGCTGGAG------AAT-AGA-AAGTTGA------T-AGTCAGTTT--AAAATAGA---ATAAA---T-ATAT-T---T------AAT-tataa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           agacctatgcagtaaaaatAAAT--GT---GCT--------TTTTATT-CGGTACGCGTTGACCTGCAG--CAGAAAATAG-AA-C----TTCT-TTATGGAA----TTTCTTT---CCCGT--AA-T-GCGCATAGG-CAAAATGT----GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTAA---ACTA--G---TTTGAT-ATCT---TAA---AAC----TTGTGTAATGTATATTGT-AT------G------A
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gtcaaaattcaagtgtgttatatcgccttacattttccgattagtcattgctacatgtatctacactcgatctaaatctga---GTT-----A-TTTT---T-CGGTCACCGTTGACCTATT-----GAACAGTTTAT-TAA-ATTTCTTCATGACA-ACGATTTTCC---CT--T--AA-T-TCACATGTT-CAAATCAgttcttttcacaacaaacgttttcattaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ttgggTT-TGGTCAGCATTGACTTATTG--GAGAAAATGGTAA-TTATATTGC-TT-CATGA-AC-TGTTTTC---CC--G--TA-TAGCGTAAGGG-CAACACGTG---GTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTA-TGTAG---TTTGAT-TTGT---AAA---AT-----GTGTATAGTGgag
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTCCTACTG--AATAACATTTTAT-TGA-ATTTT-TCATGTAA-AAAATTTTTC-----------A-T-GCA-ATGCA-CAATACTTG---GTTTTCG-T-C----------------TT--CTTCACAATTCA---A-TA--AT--TTTGAT-ATTT---AAA----AC----TTA---AGTGTAGATTTT-AT------GCCTGATAAT-AGA-AGTTTGA------T-AGTCAGTTT--AAAATAGA---ATAAA---T-CTATC----T------AAT-AA
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aaacctgtgcagttaaaattcgcaaatactcaaattatttggtacgattgccatcagttctctaagatacaggccagtcagaatgacgatagcatatagcctacattttccaaaataagaggcattctaaatgctatctgcactattatttaaaaacttatttagaacaagtgttttatatcagaaTAATCTATTG--AAGAACGTT-TAATCGA-ATTTC-TTA-ACAATATTTTTTTTTTTTCCA-T--AA-T-GCGTGAATG-CA---CATGTTGGTTTTGG-T-CTATA-AAATCAGAATGTT--TT--ATGGTTCA---A-TA--------TAAC-T--------A---GTG----GT-----GTGTTGATTTT-AT------G------TACCAAA-A---TTGATA--GT-AG--GGTTT--------GA---A-AAT---T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAA-AATGCTGCA-CAATTAAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTT---CC--A--AAAG-GCACACGTG-CTAAACATG---GTTTCTG-TGT-GTA-AGATCAGA--GTT--TTTCATGGCTCA---A-TA--AT--TTTGAT-TTTTTTACAA------------ATGTAATGGTGATTTTCAT------G------CA--A-A-AATATTGATA--GT-GG----------GTATAAA---ATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATTatttagg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tgcGTT-CAAAACGGG---GTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTCA---A-TA--CT--TTTGAT-TTTT---AAATC-TTG----GT---TAGTTTAGATTTT-tacctataaatttgttgtgttatgaaaataatttggtgt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tAAAATGTG---GTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTTA---A-CC--ATATTTTGAT-TTTT---AAAAGCTTT----GTA----GTTGAGATTTT-AT------G------AG--AG------TTAATTTGAT-AG--TGGTT--G--AAAAT---A-AAA---T-ACATCT----------AAT-AA----CAAATTG-A---ATTATAGAAGTGTTGCG-tgtatgcgcgagactataaattg
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aatcttcgtcaatacaatatttcttttgactggcaatgctgttgtttttggtcagcgttaaaaaaaaacaacattttatagaatttcttcattaaaaaatcatcaTG---GCTTCTG-T-C-TTT-AAAGTCTGA--------TC----TTCA---A---------TTTGATATTTA---CAA---CAC----GTGT--AGTGTAGAATTA-ATGG----G------AG--AGA-AA--TTGATA--GC-AA--AGTTT--AACAT-AA---A-ATG---C-ATTTATC--T------AAT-AAAGAACTAATTGAA---ATGATAAAAGTGTTACG-TAATCAGAGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ---GTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTCA---A-TA--GC--TTTGAT-TTTT---AAA----TCGAGAGTAT----TGTGTATTTT-AT------G------TA--ACA-GAATTTGAT----------AGTTT--AGTTTAAAATGA-AAA---CTATGCAT---T------AAT-AAAAGAATAAATG-A---ATTATAAAATTGTTGCATAATTa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    catttcaatcgtt---A-AAA---T-ATTTCTATCT------AAT-TAAGAACTAACTG-A---ATTATAAAAGTGTTGCT-TATTTAAAGTacag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gagcatttggtagtacagtttgatgc---T------AAT-AGAGACTTTATTG-A---ATTATAAAAGTGTTGCACAATTAAAAGTCTact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1111111111111111111111111111111111111111111                                                                                                                                                                                             11111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           55                       4                           4                                                                                                                                                                                                                                                                             22                                    33    6666666666666666666666666666666666666666666                         55555                      2       4444444        111                     2222222     11       1        66666666666                    1                            11111111111111111111111111111111111111111111111111111111111111111111111111111         2222222222222222222222222     11                                            1          22222222        111                                  333333333333333333                           11                   3333333333333333333              22222222222222222     1         1111    111       1  1111      111111111111                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1      55     6               1 0  6                        0                                                                                                                                                                                                                                                               1     1  0    44  1 0   77               22 1       00    6666666666666666666666666666666666666666666  1      1  1  22     22 00000         1   1   1    3 0 11  3333333  1  3  555  0  0      0      8 9999999     00       0  1     33333333333     0     0   1 22 6      1 1 2   6 7           11111111111111111111111111111111111111111111111111111111111111111111111111111   99    9999999999999999999999999     99 1                 1  2        2  88  4     2 8   88   00000000     1  555  3 3  66 4   3       3      22 3 000000000000000000  555          6666 3 888  22      3    6666 3  6666666666666666666    1      3  55555555555555555     1         0000    000     3 0  6666 3  1 777777777777   3             4      55            55 2            
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .      ..     .               . .  .                        .                                                                                                                                                                                                                                                               .     .  .    ..  . .   ..               .. .       ..    ...........................................  .      .  .  ..     .. .....         .   .   .    . . ..  .......  .  .  ...  .  .      .      . .......     ..       .  .     ...........     .     .   . .. .      . . .   . .           .............................................................................   ..    .........................     .. .                 .  .        .  ..  .     . .   ..   ........     .  ...  . .  .. .   .       .      .. . ..................  ...          .... . ...  ..      .    .... .  ...................    .      .  .................     .         ....    ...     . .  .... .  . ............   .             .      ..            .. .            
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    0      00     0               0 0  0                        0                                                                                                                                                                                                                                                               0     0  7    33  0 7   33               00 0       33    0000000000000000000000000000000000000000000  0      0  0  00     00 77777         0   0   0    3 7 77  2222222  0  2  222  2  8      8      0 0000000     66       4  4     44444444444     6     6   4 88 0      4 4 2   7 3           00000000000000000000000000000000000000000000000000000000000000000000000000000   22    2222222222222222222222222     66 9                 4  4        4  88  0     0 0   66   88888888     7  777  6 6  77 9   3       1      22 1 000000000000000000  555          5555 1 555  55      1    5555 1  2222222222222222222    2      3  00000000000000000     0         5555    000     6 9  7777 6  0 888888888888   3             0      55            44 1            
consensus                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CGAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCANCGCCAGTTCT----GATTTATACATGCCAGTCAATACGACAACAGCTTTTNGCC-TTACATTTTCCGA------AAC--G--AGA--CAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTT-NTTCGGTCAGCGTTGACCTACTGAAGAACATTTTATCGA-ATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-TAGTGTAGATTTT-AT------G------AA--AGAAANTTTGATAGT-AGAGTTTAANATAAA-A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCG-NANTTAAAGTCTGGG
Reference ( family-1933 )     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTNTGTCAGAATCGTCCTTACTGAATAGCATTNTATTGAAATATAGCCTTTTATTAATCACGCAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTNGAATANCTCAATGACAANACATACCTTAAACAAACCAATTNNANCGATGGAACTATAGCATTAAACATCAATCAATGTTTACATACATTCGATGCAAGTGAANATTTGANAGNAANNTAAAANNGGGCAATGTATATTTNATTNATTNAAAGCCGANCAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTC-----A----ATACATGCCAGTCAATACGA-AACAGCTTTTTGCT-TTACATTTTCCGA------AAC--G--AAA--CNT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTT-CTTCGGTCAGCGTTGACCTACTGNAGAACATTNTANCGA-ATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCGGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-AT-TAGTGTAGATTTT-AT------G------AA--AGAAATTTTGATAGT-AGAGTTTAGNATAAA-A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCG-NATTTAAAGTCTGGG
gi|1                          :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CAAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTTT-----GATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA------AAC--G--AAA--CCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTTCCTTCAGTCCGCGTTGACCTACTGCAGAATATTGTAACAA-GTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATACAGTGTAGATTTT-AT------G------AA--AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCG-AATTTAAAGTCTGGG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T-GTGT--ATTTT-AT------G------TA--ACAGAATTTGATAGT-TTAGTTTAAAAT--G-A-AAA---CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCA-TAATTACAG
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          catttcTTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTATATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTATAGTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT--AGTGTAGAATTA-AT------GGG----AG--AGAAATT--GATAGC-AAAGTTTAACATAAA-A-TG----C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACG-TAATCAGAGT
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-TAGTTTAGATTTT-a
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   t---G-----T---T-------ATTTT---TCGGTCACCGTTGACCTATT---GAACAGTTTATTAA-ATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ttgggTTTGGTAGT-ACAGTTT--GATGCA-A-AA----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCT-TATTTAAAGTtcagag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2                          : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CAAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTTT-----GATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA------AAC--G--AAA--CCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTTCCTTCAGTCCGCGTTGACCTACTGCAGAATATTGTAACAA-GTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATACAGTGTAGATTTT-AT------G------AA--AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCG-AATTTAAAGTCTGGGtta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTT----------CGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA-T------TCACTTATATTCAA-T-------ATTTGGTATAACTA---------------A----ATACATGTCAGTCAATAATA-AACCG-TGTTTACTATTACAGTTTCCGAGTC---AAC--A--AGAGTCAA---TT---------T---------T----------CGTAAATGCTATCTATTTGCACT--AATTTGGTAACG-----TTGAT-------GTTCT-TTTCGGTCAGCGTTAACCTATTGAACAGCATTTTATAGA-ATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCGG-T-C-A----------GGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGTAGGGTCGATTTT-AT------G------CG--AGATAATTTGAAAGTAAGAGTTTTAATTAAATA-AAAT--C-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCTCTAAG----ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA------AATAAG--AGG--CAT---TCTAAATGCTAT---------CTGCACTATTATTTAAA-------------AACT--TATT--TA---GAACAAG---T-------GTTTT-AT---ATCAGAATTGTCCTACTGAATAACATTTTATTGA-ATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C----TT-A---AGTGTAGATTTT-AT------GCCTGATAAT-AGAAG-TTTGATAGT--CAGTTTAAAATAGA-ATAAA---T-CTATC----T------AAT-AA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCT----A----ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA------AGC--GTGAGG--CAT---TC---------TAAATGCTATCTGCACTATTATTCAGA-------------AACT--TATT--TT---A-----T---TAACAAGTGTTTT-AT---GTCAGAATTGTCCTACTGAATAACATTTTATTGA-ATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C----TT-A---AGTGTAGATTTT-ATGCTGGAG------AAT-AGAAA-GTTGATAGT--CAGTTTAAAATAGA-ATAAA---T-ATAT-T---T------AAT-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agacctatgcagtaaaaatTCGCC-TTACATTTTCCGATTAGTCATT--G--CTA--CATGTATC---------TACAC-----TCG-------ATCTAAA-------------T-CTGAAAAT--GT---G-----C---T--------TTTT-ATTCGGTACGCGTTGACCTGCAGCAGAAAA---TA--GA-ACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGTAATGTATATTGT-AT------G------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gtcaaaattcaagtgtgttataT---G-----C---T-------GTTGT-TTTTGGTCAGCGTTAAAAAA--AAACAACATTTTATAGA-ATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT-AG-T--TG-AGATTTT-AT------G------AG--AGTTAATTTGATAGT-GG--TTGAAAATAAA-A-TA----C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCG-gttcttttcacaacaaacgttttcattaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGTTTAATCGA-ATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T-GTGTTGATTTT-AT------G------TACCAAAA---TTGATAGT-AGGGTTT------GA-A-AAT---T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCA-CAATTAAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-TGGT---GATTTTCAT------G------CA--A-AAATATTGATAGT-GG------GTATAAA-ATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTG-atttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1                                     11    1      1   333333     222     2222                        33333                       11     4444444        11                       2222222    11                44444444444                   2                           22222222           2222222222222222222222222222222222222222222222222222222222222222222222222222222222222                                                           1          22222222        111                                  2222222222                                   11                   4444444444444444444               11111111111111                 111               11111      111111111111                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          6                          88    3      3   888888     333     8888                        33333                       44     3333333  1  3  88   6  0      0      8  3333333    00       1  1     44444444444    0     0   1 22 0      6 1 1                22222222   999     2222222222222222222222222222222222222222222222222222222222222222222222222222222222222  888  5  99 1                 1  2    0  55 55    7       2 8   88   00000000     1  555  3 3  66 4   3       3      22 3 5555555555   2  77  555          6666 3 888  22      3    6666 3  1111111111111111111     1      3  22222222222222 4 1   55        222       2  2  3 66666 3  1 777777777777   3             4      55            1 1  5          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          .          .                          ..    .      .   ......     ...     ....                        .....                       ..     .......  .  .  ..   .  .      .      .  .......    ..       .  .     ...........    .     .   . .. .      . . .                ........   ...     .....................................................................................  ...  .  .. .                 .  .    .  .. ..    .       . .   ..   ........     .  ...  . .  .. .   .       .      .. . ..........   .  ..  ...          .... . ...  ..      .    .... .  ...................     .      .  .............. . .   ..        ...       .  .  . ..... .  . ............   .             .      ..            . .  .          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          7                          33    3      3   333333     333     3333                        33333                       00     2222222  0  2  00   5  8      8      0  8888888    66       0  4     00000000000    6     6   4 88 0      2 4 0                00000000   555     6666666666666666666666666666666666666666666666666666666666666666666666666666666666666  888  0  99 9                 4  1    7  55 55    3       0 0   66   88888888     7  777  6 6  77 9   3       1      22 1 7777777777   8  44  555          5555 1 555  55      1    5555 1  7777777777777777777     2      3  44444444444444 0 6   66        333       3  1  6 22222 6  0 888888888888   3             0      55            0 0  0          
consensus                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 )     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCANCGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCTTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAANATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGNANTT-AAAGTCTGGG
gi|1                          :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTTAAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTTAACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttgggTTTGGTAGT-ACAGTTTGATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2                          : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTTTAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTTAAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTTAAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTGAAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTT------GA-A-AAT-T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTATAAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1                                     11    1      1   333333     222     2222                        33333                       11     4444444        11                       2222222    11                44444444444                   2                           22222222           2222222222222222222222222222222222222222222222222222222222222222222222222222222222222                                                           1          22222222        111                                  2222222222                                   11                   4444444444444444444               11111111111111                 111                22222      111111111111                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          6                          88    3      3   888888  0  333     8888                        33333                       44     3333333  1  3  88   6  0      0      8  3333333    00       0  1     44444444444    0     0   1 22 0      1 1 1                22222222   999     2222222222222222222222222222222222222222222222222222222222222222222222222222222222222  888  5  99 1                 1  2    0  55 55    7       2 8   88   00000000     1  555  3 3  66 4   3       3      22 3 5555555555   2  77  555          6666 3 888  22      3    6666 3  1111111111111111111     1      3  22222222222222 4 1   55        222     3     4  3 00000 3  1 777777777777   3             4      55            1 0  5          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          .          .                          ..    .      .   ......  .  ...     ....                        .....                       ..     .......  .  .  ..   .  .      .      .  .......    ..       .  .     ...........    .     .   . .. .      . . .                ........   ...     .....................................................................................  ...  .  .. .                 .  .    .  .. ..    .       . .   ..   ........     .  ...  . .  .. .   .       .      .. . ..........   .  ..  ...          .... . ...  ..      .    .... .  ...................     .      .  .............. . .   ..        ...     .     .  . ..... .  . ............   .             .      ..            . .  .          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          7                          33    3      3   333333  7  333     3333                        33333                       00     2222222  0  2  00   5  8      8      0  8888888    66       6  4     00000000000    6     6   4 88 0      0 4 0                00000000   555     6666666666666666666666666666666666666666666666666666666666666666666666666666666666666  888  0  99 9                 4  1    7  55 55    3       0 0   66   88888888     7  777  6 6  77 9   3       1      22 1 7777777777   8  44  555          5555 1 555  55      1    5555 1  7777777777777777777     2      3  44444444444444 0 6   66        333     6     4  6 44444 6  0 888888888888   3             0      55            2 8  0          
consensus                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 )     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1                          :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTT-AAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTT-AACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttgggTTTGGTAGT-ACAGTTT-GATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2                          : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTG-AAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTGAAAAT----------T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTAT-AAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1                                     11    1      1   333333     222     2222                        33333                       11     4444444        11                       2222222    11                44444444444                   2                           22222222           2222222222222222222222222222222222222222222222222222222222222222222222222222222222222                                                           1          22222222        111                                  2222222222                                   11                   4444444444444444444               11111111111111                 111                22222      111111111111                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          6                          88    3      3   888888  0  333     8888                        33333                       44     3333333  1  3  88   6  0      0      8  3333333    00       0  1     44444444444    0     0   1 22 0      1 1 1                22222222   999     2222222222222222222222222222222222222222222222222222222222222222222222222222222222222  888  5  99 1                 1  2    0  55 55    7       2 8   88   00000000     1  555  3 3  66 4   3       3      22 3 5555555555   2  77  555          6666 3 888  22      3    6666 3  1111111111111111111     1      3  22222222222222 4 1   55        222     3     4  3 00000 3  1 777777777777   3             4      55            1 0  5          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          .          .                          ..    .      .   ......  .  ...     ....                        .....                       ..     .......  .  .  ..   .  .      .      .  .......    ..       .  .     ...........    .     .   . .. .      . . .                ........   ...     .....................................................................................  ...  .  .. .                 .  .    .  .. ..    .       . .   ..   ........     .  ...  . .  .. .   .       .      .. . ..........   .  ..  ...          .... . ...  ..      .    .... .  ...................     .      .  .............. . .   ..        ...     .     .  . ..... .  . ............   .             .      ..            . .  .          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          7                          33    3      3   333333  7  333     3333                        33333                       00     2222222  0  2  00   5  8      8      0  8888888    66       6  4     00000000000    6     6   4 88 0      0 4 0                00000000   555     6666666666666666666666666666666666666666666666666666666666666666666666666666666666666  888  0  99 9                 4  1    7  55 55    3       0 0   66   88888888     7  777  6 6  77 9   3       1      22 1 7777777777   8  44  555          5555 1 555  55      1    5555 1  7777777777777777777     2      3  44444444444444 0 6   66        333     6     4  6 44444 6  0 888888888888   3             0      55            2 8  0          
consensus                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 )     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1                          :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTT-AAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTT-AACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttgggTTTGGTAGT-ACAGTTT-GATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2                          : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTG-AAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTGAAAAT----------T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTAT-AAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg


blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          A          C                          AC    G      A   CAATCA     CGA     GTGA                        GGCAA                       CG     ACCTGTG  C  T  GT   C                A  TTCAATA    GT          C     CTCTAAGA                 T CA C      T T T                GTCAAC     AGT     TAAATGCTATCTGCACTATTATTCAGAAACTTATTTTATTAACAAG                                         ATG  A  CC T                 T  G       GG AA    T       T T   GA   TATTTTTT     C  TGT  A A  GT A   T       T      CT C CTATAAAA     A  TT  CAT          CTGT T CCA  GC      A    TTAC C  TCGAGAGTATT             A      C  GCCTGATA       T C   AT        AAG     G     A  T AAAT  T  G CTTCAATCA      A             A      AA            T    A
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  .          .                          .     .      .   .          .       .                           .                           A      ACGCG    G  T  .    T                .  A          GT          T     TGATTTA                  T AT C      G T A                AATAA      A       TAAATGCTATCTGCACTATTATTTAAAAACTTATTTAGAACAAG                                           .    .  T  T                 T  C       .  .     C       T T   AT   CGA          C  CGT  . .  AC T   .       .      AG . GTGTAAGA     A  TA  C            .    . C    CT      .    .    .  TTCGTATAC               A      .  GCTGGAGA       . G   AA        TT      .     A  . TAAA  .  T CTATCT         .             .      .             T    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           .        G  .  .    .                .  A          GT          T     CTAA                     A TG .      A A A                AGCGT      G       CTACATGTATCTACACTCGATCTAAATCTGAAAATGTGC                                                .    .  T  T                 C  A       .  .     A       T .   GT   CGT          T  AT   . .  AC C   .       .      CT . CTACAAA      T  TC  C            .    . .    GT      .    .    .  ATGTGTAT                A      .  GT             . G   TT        AA      .     A  . TAAA  .  T ATCT           .             .      .             T    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                .  .          .           .     A                        A TG .      A A A                AAC        G       TTCGTAAATGCTATCTATTTGCACTAATTTGGTAACGT                                                 .    .  A  T                 T  A       .  .     T       . .   GC   CAT          T  G    . .  GT T   .       .      CA . CTTTAAA      A  AC  G            .    . .    AT      .    .    .  TCTTGGTT                C      .  GG             . G   AT        AC      .     A  . AAA   .  T CTCT           .             .      .             C    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         C                T          T       TTTGACGTAGACACTAATTGTGT                                                                .    .  A  T                 C  A       .  .     T       . .   GG   AAA          C  T    . .  GC T   .       .      CT . CATAAAA      G  TA  T            .    . .    AT      .    .    .  TCTTGTGT                A      .  GA             . A   GT        AG      .     A  . AAA   .  G ATT            .             .      .             A    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .    .  A  T                 C  C       .  .     A       . .   TA   TAA          T  T    . .  GT T   .       .      CG . CTTACAT      A  TC  C            .    . .    AT      .    .    .  ACTTGTGT                A      .  GC             . G   AT        GG      .     A  . TGT   .  A CTT            .             .      .             C    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .    .  T  .                 C  A       .  .     A       . .   AA   CT           T  A    . .  AC C   .       .      TC . CATAGA       C  TG  C            .    . .    G       .    .    .  AGCTTTGT                A      .  GA             . G   TA        AG      .     A  . TG    .  A TTT            .             .      .             T    .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               .                 T  A       .  .     C       . .   G    T            T  .    . .  A  A   .       .      GT . ATGAA        A  TC  T            .    . .    T       .    .    .  CACGTGT                 A      .  GA             . C   G         C       .     .  . TA    .  C CT             .             .      .                   
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 .  .       .  .     .       . .   .    .            .  .    . .  A  C   .       .      CG . TTA          A  A   T            .    . .    G       .    .    .  TAGTGGT                 T      .  GT             . .   A         C       .     .  . .     .  T TT             .             .      .                   
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     .  .    . .  .  .   .       .      TG . C            A  G   T            .    . .    T       .    .    .  TGTAAT                  .      .  GC                             G       .     .  . .     .  C .              .                                        
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         .       .      CT . A            .  .   T            .    . .    .       .    .    .  ACTTA                   .      .                                                                              .                                        
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 .      .  . .            .  .   .            .    . .    .       .    .    .  ACTTA                                                                                                                                                  


blockSeqCons                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GT                                                                          AACG****                                                                                                          N*                                                                                                                                                                                 ACTTGTGT***********                                                                 TAAA*
originalCons                  :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
finalCons                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGAAACG----GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AAACTTGTGT-----------AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-ATAAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                     
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1                                     11    1      1   333333     222     2222                        33333                       11     4444444        11                       2222222    11                33333333333                   2                           1111111111111111111111111111111111111111111111111111111111111111111111111         22222222222222222222222222                                                                  22222222        111                                  2222222222                                                                                 11111111111111                 111              111111111    111111111111                                                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          6                          88    3      3   888888  0  333     8888                        33333                       44     3333333  1  3  88   6  0      0      8  3333333    00       0  1     99999999999    0     0   1 22 0      1 1 1    7           3333333333333333333333333333333333333333333333333333333333333333333333333   99    99999999999999999999999999  5  99 1                 1  2       66666   88       8 888  88   00000000     1  555  3 3  66 4   3       3      22 3 5555555555   2  77  555          6666 3 888  9       3    66666  33  0 2  88            3  22222222222222 4 1   55        222     777      666666666  1 777777777777   3      1     3 3      55            0    4          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   .....................................................................................................                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          .          .                          ..    .      .   ......  .  ...     ....                        .....                       ..     .......  .  .  ..   .  .      .      .  .......    ..       .  .     ...........    .     .   . .. .      . . .    .           .........................................................................   ..    ..........................  .  .. .                 .  .       .....   ..       . ...  ..   ........     .  ...  . .  .. .   .       .      .. . ..........   .  ..  ...          .... . ...  .       .    .....  ..  . .  ..            .  .............. . .   ..        ...     ...      .........  . ............   .      .     . .      ..            .    .          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          3          7                          33    3      3   333333  7  333     3333                        33333                       00     2222222  0  2  00   5  8      8      0  8888888    66       6  4     22222222222    6     6   4 88 0      0 4 0    3           3333333333333333333333333333333333333333333333333333333333333333333333333   22    88888888888888888888888888  0  99 9                 4  1       99999   44       0 666  66   88888888     7  777  6 6  77 9   3       1      22 1 7777777777   8  44  555          5555 1 555  1       1    99999  88  3 4  55            3  44444444444444 0 6   66        333     444      888888888  0 888888888888   1      2     6 6      00            1    4          
consensus                     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---A---ACG-GAGACAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-C-ATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----AAAA-CTTGTGT--AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAAATAAA---C-ATNTCT---T------AAT-AAAGAACTAATT-G-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 )     :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---A---ACG-GAGACAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-C-ATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----AAAA-CTTGTGT--AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAAATAAA---C-ATNTCT---T------AAT-AAAGAACTAATT-G-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1                          :  CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---A---ACG-AA-ACCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-C-ATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT-----CAA-TTCGTATACAGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAAA-AAA---C-ATTTCT---T------AAT-AAAGAACTAATT-G-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----AAAT-CGAGAGT--ATTGTGTATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTTAAAATGA---AAA---CTATGCAT---T------AAT-AAAAGAATAAAT-G-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTC-ATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----AAAA-TGTGTAT--AGTG
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA-CACGTGT--AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTTAACATAAAAT--G---C-ATTTATC--T------AAT-AAAGAACTAATT-GAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----AAAT-CTTGGTT--AGTTTAGATTTT-a
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tT-AAAAAA--AATTTG-ACATAT--AAAAGTGTTGCGTTATT-AAAGTtgtatgcgcgagactataaattg
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gtgtaggaataagataaatttgataaagaaatgattttttgtatgcat-------G---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-C-ATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAatttcagtgca
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ttgggTTTGGTAGT-ACAGTTTGATGCAAAATA--------TTTCTATCT------AAT-TAAGAACTAACT-G-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gagca---T------AAT-AGAGACTTTATT-G-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2                          : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---A---ACG-AA-ACCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-C-ATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT-----CAA-TTCGTATACAGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAAA-AAA---C-ATTTCT---T------AAT-AAAGAACTAATT-G-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCA---ACAAGAGTCAA---TT---------T---------T----------CGTAAATGCTATCTATTTGCACT--AATTTGGTAACG-----TT-------GATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-C-AT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----AAAT-CTTGTGT--AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATAAAAT-C-ATGTTT---T------AATAAAAGATCTAATT-G-AATTAT--AA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---A---ATAAGAGGCAT---TCTAAATGCTAT---------CTGCACTATTATTTAAA-------------AACT--TATT--TA---GAACAAGT-------G---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-C-ATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----AAAA-CTTA-----AGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTTAAAATAGAATAAA---T-CTATC----T------AAT-AA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTAAT-------ACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---A---GCGTGAGGCAT---TC---------TAAATGCTATCTGCACTATTATTCAGA-------------AACT--TATT--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-C-ATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----AAAA-CTTA-----AGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTTAAAATAGAATAAA---T-ATAT-T---T------AAT-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     agacctatgcagtaaaaatTCGCCTTACATTTTCCGATT-AGTCATT-GCTACATGTATC---------TACAC-----TCG-------ATCTAAA-------------T-CTGAAAAT--GT---G-----CT-----------TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAAAAT-------A--GAACTTC-T-TTATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-TG-TTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAGTTT-GATATCTT----AAAA-CTTGTGT--AATGTATATTGT-AT------G------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gtcaaaattcaagtgtgttataT---G-----CT-------G---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTC-ATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----AAAAGCTT-TGT--AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTGAAAATAAAATA-----C-ATCT------------AAT-AA----CAAATT-G-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T----TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA-T-----------------AA-CTAGTGG--TGTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTG----AAAAT------T-ATTGCT---TCAATCAAAT-AAAGAATTTATT-G-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACAAA------TGT--AATGGTGATTTTCAT------G------CA-A-AAATATTGATAGT--GGGT-----ATAAAATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATT-T-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA