lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 1 2 33333333 22222 2 1 2 222 22 44444444444444444444444444444444444444444444 55555 2 55555 33333333 4444444 33 44444444444444 1 1 222 222222222222222222222222222222222222222222222222 1111111 3333333 22 111 2222222 111 11111 22222222222 555555555555555555 2222222 1111 6666666666666666 555555555555555555555555555555555555555555555555555555555555 1111111111 1111 111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 77 5 2 0 55555555 77777 0 5 4 3 0 4 111 55 4 77 44444444444444444444444444444444444444444444 2 3 4 77 77 00000 2 2 4 0 2 00000 2 55555555 7 5555555 66 11111111111111 6 88 3 6 3 7 7 0 333 666666666666666666666666666666666666666666666666 7 5555555 1111111 0 11 888 6 222 5 7 3333333 444 7 44444 33333333333 4 4 6 8 4 1 555 55 3 555555555555555555 44 555 3 6666666 3 3333 6666666666666666 3 999999999999999999999999999999999999999999999999999999999999 99999 5 1 9999999999 3 5 888 8 8888 555
lowQualScore : ..................................................................................................... . .. . . . ........ ..... . . . . . . ... .. . .. ............................................ . . . .. .. ..... . . . . . ..... . ........ . ....... .. .............. . .. . . . . . . ... ................................................ . ....... ....... . .. ... . ... . . ....... ... . ..... ........... . . . . . . ... .. . .................. .. ... . ....... . .... ................ . ............................................................ ..... . . .......... . . ... . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 55 5 5 0 00000000 55555 0 5 0 0 0 0 000 00 0 55 00000000000000000000000000000000000000000000 5 0 0 00 00 00000 5 5 0 0 5 00000 5 00000000 3 7777777 77 33333333333333 7 33 3 7 3 3 0 7 333 000000000000000000000000000000000000000000000000 3 0000000 2222222 6 44 888 7 555 0 6 1111111 999 1 66666 44444444444 4 4 4 2 0 2 888 44 3 888888888888888888 66 888 3 2222222 3 8888 8888888888888888 6 888888888888888888888888888888888888888888888888888888888888 00000 1 6 5555555555 6 0 888 0 4444 555
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTNTGTCAGAATCGTCCTTACTGAATAGCATTNTATTGAAATATAGCCTTTTATTAATCACGCAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTNGAATANCTCAATGACAANACATACCTTAAACAAACCAATTNNANCGATGGAACTATAGCATTAAACATCAATCAATGTTTACATACATTCGATGCAAGTGAANATTTGANAGNAANNTAAAANNGGGCAATGTATATTTNATTNATTNAAAGCCGANCAAACGCGCANTTTAAGTAATCCGTCACAAATATTTAATA------ATTTGGTACAACCAACGCCAGTTC-A---ATACATGCCAGTCAATACGA-AACAGCTTTTTGCT-TTACATTTTCCGA---AACG--A-----AACNTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTC-TT-CGGTCAGCGTTGACCTACTG--NAGAACATTNTAN-CGA-ATTTC-TCATGNAA-ACGTTTTTTT---CC--T--AA-T-GCGCACGTG-CAAAACGTG---GTTTCNG-T-C-ATA-AAAGTCGGATNTT--TTTCATGGTTCA---A-TA--GT--TTTGAT-TTTT---AAA----TC----GTAT-TAGTGTAGATTTT-AT------G------AA--AGA-AATTTTGATA--GT-AG--AGTTT--AGNATAAA---A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-A---ATTATAAAAGTGTTGCG-NATTTAAAGTCTGGG
Reference ( gi|1 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACA----------TT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-----CACTTTAAGTAATCCGTCACAAATATTTAATA------ATTTG--ACAACCAACGCCAGTTTGATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA---AACG--A-----AACCTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTCCTT-CAGTCCGCGTTGACCTACTG--CAGAATATTGTAA-CAA-GTTAC-TCATATAA-ACGTTTTTTT---CC--T--AA-T-GCACACGTG-CAAAACATG---GTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTCA---A-TG--GT--TTTGAT-TTTT---CAA---TTC----GTATACAGTGTAGATTTT-AT------G------AA--AGA-AATTTTAATT--GT-AG--AGATT--AGCACAAA---A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-A---ATAACGATAGTGTTGCG-AATTTAAAGTCTGGG
gi|2 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-----CACTTTAAGTAATCCGTCACAAATATTTAATA------ATTTG--ACAACCAACGCCAGTTTGATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA---AACG--A-----AACCTTCT---------TTG-------ACG-----TA---GACACTAATT--GT---GTT-----G-TTTTCCTT-CAGTCCGCGTTGACCTACTG--CAGAATATTGTAA-CAA-GTTAC-TCATATAA-ACGTTTTTTT---CC--T--AA-T-GCACACGTG-CAAAACATG---GTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTCA---A-TG--GT--TTTGAT-TTTT---CAA---TTC----GTATACAGTGTAGATTTT-AT------G------AA--AGA-AATTTTAATT--GT-AG--AGATT--AGCACAAA---A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-A---ATAACGATAGTGTTGCG-AATTTAAAGTCTGGG
gi|5 : TTTATGTCAGAATTGTCCT-ACTGAATAACATTTTATTGAA--------TTTT-----TCATGCAAATAAT-TTTTATGC
gi|3 : agacctatgcagtaaaaattcacaaaatttaatattcaatatttggtacaatcaccgtcagttctaatacaggccagtcagaatgacgatagcatatagcctacattttccaaagcgtgaggcattctaaatgctatctgcactattattcagaaacttattttattaacaagtgtACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATG----------TTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAACGCGCAGTTTAA----T---TCACTTATATTCAATA-------TTTGGTATAACTAA--------------ATACATGTCAGTCAATAATA-AACCG-TGTTTACTATTACAGTTTCCGAGTCAACA--AGAGTCAATTTTCG---------TAA-------ATGCTATCTATTTG-CACTAATTTGGTAACGTT-----GATGTTCTTTTCGGTCAGCGTTAACCTATTGAACAGCATTTTATAG--AA-TTTCT-TCATA--A-CCATCATTTT---CC--TGTAA-T-GCGTA-GTATCAAAACATA---GTTTCGG-T-C-A----------GGTCTT--CTTCAGTGTTCA---A-T---AT--TTTGAA-TTTT---AAA----TC----TTGTGTAGGGTCGATTTT-AT------G------CG--AGATAATTTGAA-A--GTAAG--AGTTTTAATTAAATA---A-AAT---C-ATGTTT---T------AATAAAAGATCTAATTG-A---ATaatgtgcaaaactaggtttagccttttcatggttcaataattttgatatttaaaacttaagtgtagattttatgctggagaatagaaagttgatagtcagtttaaaatagaataaatatatttaat
gi|5 : cTCACAAA-ATTTAATATTCAATATTTGGTACAATCACCGTCAGTTCTA---ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA---AGCGTGA-----GGCATTCTAAATGCTATCTGCACTATTATT-----CA---GAAACTTATT--TT---ATTAACAAG-TGTT--TT-ATGTCAGAATTGTCCTACTG--AATAACATTTTAT-TGA-ATTTT-TCATGCAA-ATAATTTTT------------A-T-GCA-ATGTG-CAAAACTAG---GTTT--------------AGC------CT--TTTCATGGTTCA---A-TA--AT--TTTGAT-ATTT---AAA----AC----TTA---AGTGTAGATTTT-ATGCTGGAG------AAT-AGA-AAGTTGA------T-AGTCAGTTT--AAAATAGA---ATAAA---T-ATAT-T---T------AAT-tataa
gi|6 : agacctatgcagtaaaaatAAAT--GT---GCT--------TTTTATT-CGGTACGCGTTGACCTGCAG--CAGAAAATAG-AA-C----TTCT-TTATGGAA----TTTCTTT---CCCGT--AA-T-GCGCATAGG-CAAAATGT----GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTAA---ACTA--G---TTTGAT-ATCT---TAA---AAC----TTGTGTAATGTATATTGT-AT------G------A
gi|16 : gtcaaaattcaagtgtgttatatcgccttacattttccgattagtcattgctacatgtatctacactcgatctaaatctga---GTT-----A-TTTT---T-CGGTCACCGTTGACCTATT-----GAACAGTTTAT-TAA-ATTTCTTCATGACA-ACGATTTTCC---CT--T--AA-T-TCACATGTT-CAAATCAgttcttttcacaacaaacgttttcattaa
gi|11 : ttgggTT-TGGTCAGCATTGACTTATTG--GAGAAAATGGTAA-TTATATTGC-TT-CATGA-AC-TGTTTTC---CC--G--TA-TAGCGTAAGGG-CAACACGTG---GTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTA-TGTAG---TTTGAT-TTGT---AAA---AT-----GTGTATAGTGgag
gi|4 : TTGTCCTACTG--AATAACATTTTAT-TGA-ATTTT-TCATGTAA-AAAATTTTTC-----------A-T-GCA-ATGCA-CAATACTTG---GTTTTCG-T-C----------------TT--CTTCACAATTCA---A-TA--AT--TTTGAT-ATTT---AAA----AC----TTA---AGTGTAGATTTT-AT------GCCTGATAAT-AGA-AGTTTGA------T-AGTCAGTTT--AAAATAGA---ATAAA---T-CTATC----T------AAT-AA
gi|8 : aaacctgtgcagttaaaattcgcaaatactcaaattatttggtacgattgccatcagttctctaagatacaggccagtcagaatgacgatagcatatagcctacattttccaaaataagaggcattctaaatgctatctgcactattatttaaaaacttatttagaacaagtgttttatatcagaaTAATCTATTG--AAGAACGTT-TAATCGA-ATTTC-TTA-ACAATATTTTTTTTTTTTCCA-T--AA-T-GCGTGAATG-CA---CATGTTGGTTTTGG-T-CTATA-AAATCAGAATGTT--TT--ATGGTTCA---A-TA--------TAAC-T--------A---GTG----GT-----GTGTTGATTTT-AT------G------TACCAAA-A---TTGATA--GT-AG--GGTTT--------GA---A-AAT---T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAA-AATGCTGCA-CAATTAAAGT
gi|9 : TTT---CC--A--AAAG-GCACACGTG-CTAAACATG---GTTTCTG-TGT-GTA-AGATCAGA--GTT--TTTCATGGCTCA---A-TA--AT--TTTGAT-TTTTTTACAA------------ATGTAATGGTGATTTTCAT------G------CA--A-A-AATATTGATA--GT-GG----------GTATAAA---ATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATTatttagg
gi|14 : tgcGTT-CAAAACGGG---GTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTCA---A-TA--CT--TTTGAT-TTTT---AAATC-TTG----GT---TAGTTTAGATTTT-tacctataaatttgttgtgttatgaaaataatttggtgt
gi|7 : tAAAATGTG---GTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTTA---A-CC--ATATTTTGAT-TTTT---AAAAGCTTT----GTA----GTTGAGATTTT-AT------G------AG--AG------TTAATTTGAT-AG--TGGTT--G--AAAAT---A-AAA---T-ACATCT----------AAT-AA----CAAATTG-A---ATTATAGAAGTGTTGCG-tgtatgcgcgagactataaattg
gi|12 : aatcttcgtcaatacaatatttcttttgactggcaatgctgttgtttttggtcagcgttaaaaaaaaacaacattttatagaatttcttcattaaaaaatcatcaTG---GCTTCTG-T-C-TTT-AAAGTCTGA--------TC----TTCA---A---------TTTGATATTTA---CAA---CAC----GTGT--AGTGTAGAATTA-ATGG----G------AG--AGA-AA--TTGATA--GC-AA--AGTTT--AACAT-AA---A-ATG---C-ATTTATC--T------AAT-AAAGAACTAATTGAA---ATGATAAAAGTGTTACG-TAATCAGAGT
gi|10 : ---GTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTCA---A-TA--GC--TTTGAT-TTTT---AAA----TCGAGAGTAT----TGTGTATTTT-AT------G------TA--ACA-GAATTTGAT----------AGTTT--AGTTTAAAATGA-AAA---CTATGCAT---T------AAT-AAAAGAATAAATG-A---ATTATAAAATTGTTGCATAATTa
gi|17 : catttcaatcgtt---A-AAA---T-ATTTCTATCT------AAT-TAAGAACTAACTG-A---ATTATAAAAGTGTTGCT-TATTTAAAGTacag
gi|18 : gagcatttggtagtacagtttgatgc---T------AAT-AGAGACTTTATTG-A---ATTATAAAAGTGTTGCACAATTAAAAGTCTact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 4 4 22 33 6666666666666666666666666666666666666666666 55555 2 4444444 111 2222222 11 1 66666666666 1 11111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222 11 1 22222222 111 333333333333333333 11 3333333333333333333 22222222222222222 1 1111 111 1 1111 111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 55 6 1 0 6 0 1 1 0 44 1 0 77 22 1 00 6666666666666666666666666666666666666666666 1 1 1 22 22 00000 1 1 1 3 0 11 3333333 1 3 555 0 0 0 8 9999999 00 0 1 33333333333 0 0 1 22 6 1 1 2 6 7 11111111111111111111111111111111111111111111111111111111111111111111111111111 99 9999999999999999999999999 99 1 1 2 2 88 4 2 8 88 00000000 1 555 3 3 66 4 3 3 22 3 000000000000000000 555 6666 3 888 22 3 6666 3 6666666666666666666 1 3 55555555555555555 1 0000 000 3 0 6666 3 1 777777777777 3 4 55 55 2
lowQualScore : ..................................................................................................... . .. . . . . . . . . .. . . .. .. . .. ........................................... . . . .. .. ..... . . . . . .. ....... . . ... . . . . ....... .. . . ........... . . . .. . . . . . . ............................................................................. .. ......................... .. . . . . .. . . . .. ........ . ... . . .. . . . .. . .................. ... .... . ... .. . .... . ................... . . ................. . .... ... . . .... . . ............ . . .. .. .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 0 0 0 0 0 0 0 7 33 0 7 33 00 0 33 0000000000000000000000000000000000000000000 0 0 0 00 00 77777 0 0 0 3 7 77 2222222 0 2 222 2 8 8 0 0000000 66 4 4 44444444444 6 6 4 88 0 4 4 2 7 3 00000000000000000000000000000000000000000000000000000000000000000000000000000 22 2222222222222222222222222 66 9 4 4 4 88 0 0 0 66 88888888 7 777 6 6 77 9 3 1 22 1 000000000000000000 555 5555 1 555 55 1 5555 1 2222222222222222222 2 3 00000000000000000 0 5555 000 6 9 7777 6 0 888888888888 3 0 55 44 1
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CGAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCANCGCCAGTTCT----GATTTATACATGCCAGTCAATACGACAACAGCTTTTNGCC-TTACATTTTCCGA------AAC--G--AGA--CAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTT-NTTCGGTCAGCGTTGACCTACTGAAGAACATTTTATCGA-ATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-TAGTGTAGATTTT-AT------G------AA--AGAAANTTTGATAGT-AGAGTTTAANATAAA-A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCG-NANTTAAAGTCTGGG
Reference ( family-1933 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTNTGTCAGAATCGTCCTTACTGAATAGCATTNTATTGAAATATAGCCTTTTATTAATCACGCAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTNGAATANCTCAATGACAANACATACCTTAAACAAACCAATTNNANCGATGGAACTATAGCATTAAACATCAATCAATGTTTACATACATTCGATGCAAGTGAANATTTGANAGNAANNTAAAANNGGGCAATGTATATTTNATTNATTNAAAGCCGANCAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTC-----A----ATACATGCCAGTCAATACGA-AACAGCTTTTTGCT-TTACATTTTCCGA------AAC--G--AAA--CNT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTT-CTTCGGTCAGCGTTGACCTACTGNAGAACATTNTANCGA-ATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCGGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-AT-TAGTGTAGATTTT-AT------G------AA--AGAAATTTTGATAGT-AGAGTTTAGNATAAA-A-AAA---C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCG-NATTTAAAGTCTGGG
gi|1 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CAAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTTT-----GATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA------AAC--G--AAA--CCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTTCCTTCAGTCCGCGTTGACCTACTGCAGAATATTGTAACAA-GTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATACAGTGTAGATTTT-AT------G------AA--AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCG-AATTTAAAGTCTGGG
gi|10 : AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T-GTGT--ATTTT-AT------G------TA--ACAGAATTTGATAGT-TTAGTTTAAAAT--G-A-AAA---CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCA-TAATTACAG
gi|11 : catttcTTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTATATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTATAGTG
gi|12 : -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT--AGTGTAGAATTA-AT------GGG----AG--AGAAATT--GATAGC-AAAGTTTAACATAAA-A-TG----C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACG-TAATCAGAGT
gi|14 : GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-TAGTTTAGATTTT-a
gi|16 : t---G-----T---T-------ATTTT---TCGGTCACCGTTGACCTATT---GAACAGTTTATTAA-ATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17 : ttgggTTTGGTAGT-ACAGTTT--GATGCA-A-AA----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCT-TATTTAAAGTtcagag
gi|18 : gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2 : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAG--TCGTCTTTACTGAATAGCATTGT-TTAAAATATAGCCTTTTATTAATCACG-AAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CA-----------------TTTACATACATT---TGCA----AACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAG-CAAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTTT-----GATTTATACATGCCAGGCAATACAA-AACAGCTTTTTGCT-TTAAATCTTCCGA------AAC--G--AAA--CCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----T---T-------GTTTTCCTTCAGTCCGCGTTGACCTACTGCAGAATATTGTAACAA-GTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATACAGTGTAGATTTT-AT------G------AA--AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA---C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCG-AATTTAAAGTCTGGGtta
gi|3 : ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTT----------CGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA-T------TCACTTATATTCAA-T-------ATTTGGTATAACTA---------------A----ATACATGTCAGTCAATAATA-AACCG-TGTTTACTATTACAGTTTCCGAGTC---AAC--A--AGAGTCAA---TT---------T---------T----------CGTAAATGCTATCTATTTGCACT--AATTTGGTAACG-----TTGAT-------GTTCT-TTTCGGTCAGCGTTAACCTATTGAACAGCATTTTATAGA-ATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCGG-T-C-A----------GGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGTAGGGTCGATTTT-AT------G------CG--AGATAATTTGAAAGTAAGAGTTTTAATTAAATA-AAAT--C-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4 : cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCTCTAAG----ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA------AATAAG--AGG--CAT---TCTAAATGCTAT---------CTGCACTATTATTTAAA-------------AACT--TATT--TA---GAACAAG---T-------GTTTT-AT---ATCAGAATTGTCCTACTGAATAACATTTTATTGA-ATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C----TT-A---AGTGTAGATTTT-AT------GCCTGATAAT-AGAAG-TTTGATAGT--CAGTTTAAAATAGA-ATAAA---T-CTATC----T------AAT-AA
gi|5 : TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCT----A----ATACAGGCCAGTCAGAATGACGATAGCATATAGCC-T-ACATTTTCCAA------AGC--GTGAGG--CAT---TC---------TAAATGCTATCTGCACTATTATTCAGA-------------AACT--TATT--TT---A-----T---TAACAAGTGTTTT-AT---GTCAGAATTGTCCTACTGAATAACATTTTATTGA-ATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C----TT-A---AGTGTAGATTTT-ATGCTGGAG------AAT-AGAAA-GTTGATAGT--CAGTTTAAAATAGA-ATAAA---T-ATAT-T---T------AAT-
gi|6 : agacctatgcagtaaaaatTCGCC-TTACATTTTCCGATTAGTCATT--G--CTA--CATGTATC---------TACAC-----TCG-------ATCTAAA-------------T-CTGAAAAT--GT---G-----C---T--------TTTT-ATTCGGTACGCGTTGACCTGCAGCAGAAAA---TA--GA-ACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGTAATGTATATTGT-AT------G------A
gi|7 : gtcaaaattcaagtgtgttataT---G-----C---T-------GTTGT-TTTTGGTCAGCGTTAAAAAA--AAACAACATTTTATAGA-ATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT-AG-T--TG-AGATTTT-AT------G------AG--AGTTAATTTGATAGT-GG--TTGAAAATAAA-A-TA----C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCG-gttcttttcacaacaaacgttttcattaa
gi|8 : aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGTTTAATCGA-ATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T-GTGTTGATTTT-AT------G------TACCAAAA---TTGATAGT-AGGGTTT------GA-A-AAT---T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCA-CAATTAAAGT
gi|9 : TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-TGGT---GATTTTCAT------G------CA--A-AAATATTGATAGT-GG------GTATAAA-ATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTG-atttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1 333333 222 2222 33333 11 4444444 11 2222222 11 44444444444 2 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222222 111 2222222222 11 4444444444444444444 11111111111111 111 11111 111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 6 88 3 3 888888 333 8888 33333 44 3333333 1 3 88 6 0 0 8 3333333 00 1 1 44444444444 0 0 1 22 0 6 1 1 22222222 999 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 5 99 1 1 2 0 55 55 7 2 8 88 00000000 1 555 3 3 66 4 3 3 22 3 5555555555 2 77 555 6666 3 888 22 3 6666 3 1111111111111111111 1 3 22222222222222 4 1 55 222 2 2 3 66666 3 1 777777777777 3 4 55 1 1 5
lowQualScore : ..................................................................................................... . . .. . . ...... ... .... ..... .. ....... . . .. . . . . ....... .. . . ........... . . . .. . . . . ........ ... ..................................................................................... ... . .. . . . . .. .. . . . .. ........ . ... . . .. . . . .. . .......... . .. ... .... . ... .. . .... . ................... . . .............. . . .. ... . . . ..... . . ............ . . .. . . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7 33 3 3 333333 333 3333 33333 00 2222222 0 2 00 5 8 8 0 8888888 66 0 4 00000000000 6 6 4 88 0 2 4 0 00000000 555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888 0 99 9 4 1 7 55 55 3 0 0 66 88888888 7 777 6 6 77 9 3 1 22 1 7777777777 8 44 555 5555 1 555 55 1 5555 1 7777777777777777777 2 3 44444444444444 0 6 66 333 3 1 6 22222 6 0 888888888888 3 0 55 0 0 0
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCANCGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCTTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAANATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGNANTT-AAAGTCTGGG
gi|1 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10 : AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTTAAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11 : catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12 : -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTTAACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14 : GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16 : tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17 : ttgggTTTGGTAGT-ACAGTTTGATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18 : gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2 : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3 : ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTTTAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4 : cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTTAAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5 : TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTTAAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6 : agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7 : gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTGAAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8 : aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTT------GA-A-AAT-T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9 : TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTATAAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1 333333 222 2222 33333 11 4444444 11 2222222 11 44444444444 2 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222222 111 2222222222 11 4444444444444444444 11111111111111 111 22222 111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 6 88 3 3 888888 0 333 8888 33333 44 3333333 1 3 88 6 0 0 8 3333333 00 0 1 44444444444 0 0 1 22 0 1 1 1 22222222 999 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 5 99 1 1 2 0 55 55 7 2 8 88 00000000 1 555 3 3 66 4 3 3 22 3 5555555555 2 77 555 6666 3 888 22 3 6666 3 1111111111111111111 1 3 22222222222222 4 1 55 222 3 4 3 00000 3 1 777777777777 3 4 55 1 0 5
lowQualScore : ..................................................................................................... . . .. . . ...... . ... .... ..... .. ....... . . .. . . . . ....... .. . . ........... . . . .. . . . . ........ ... ..................................................................................... ... . .. . . . . .. .. . . . .. ........ . ... . . .. . . . .. . .......... . .. ... .... . ... .. . .... . ................... . . .............. . . .. ... . . . ..... . . ............ . . .. . . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7 33 3 3 333333 7 333 3333 33333 00 2222222 0 2 00 5 8 8 0 8888888 66 6 4 00000000000 6 6 4 88 0 0 4 0 00000000 555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888 0 99 9 4 1 7 55 55 3 0 0 66 88888888 7 777 6 6 77 9 3 1 22 1 7777777777 8 44 555 5555 1 555 55 1 5555 1 7777777777777777777 2 3 44444444444444 0 6 66 333 6 4 6 44444 6 0 888888888888 3 0 55 2 8 0
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10 : AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTT-AAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11 : catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12 : -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTT-AACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14 : GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16 : tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17 : ttgggTTTGGTAGT-ACAGTTT-GATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18 : gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2 : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3 : ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4 : cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5 : TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6 : agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7 : gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTG-AAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8 : aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTGAAAAT----------T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9 : TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTAT-AAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1 333333 222 2222 33333 11 4444444 11 2222222 11 44444444444 2 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222222 111 2222222222 11 4444444444444444444 11111111111111 111 22222 111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 6 88 3 3 888888 0 333 8888 33333 44 3333333 1 3 88 6 0 0 8 3333333 00 0 1 44444444444 0 0 1 22 0 1 1 1 22222222 999 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 5 99 1 1 2 0 55 55 7 2 8 88 00000000 1 555 3 3 66 4 3 3 22 3 5555555555 2 77 555 6666 3 888 22 3 6666 3 1111111111111111111 1 3 22222222222222 4 1 55 222 3 4 3 00000 3 1 777777777777 3 4 55 1 0 5
lowQualScore : ..................................................................................................... . . .. . . ...... . ... .... ..... .. ....... . . .. . . . . ....... .. . . ........... . . . .. . . . . ........ ... ..................................................................................... ... . .. . . . . .. .. . . . .. ........ . ... . . .. . . . .. . .......... . .. ... .... . ... .. . .... . ................... . . .............. . . .. ... . . . ..... . . ............ . . .. . . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7 33 3 3 333333 7 333 3333 33333 00 2222222 0 2 00 5 8 8 0 8888888 66 6 4 00000000000 6 6 4 88 0 0 4 0 00000000 555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888 0 99 9 4 1 7 55 55 3 0 0 66 88888888 7 777 6 6 77 9 3 1 22 1 7777777777 8 44 555 5555 1 555 55 1 5555 1 7777777777777777777 2 3 44444444444444 0 6 66 333 6 4 6 44444 6 0 888888888888 3 0 55 2 8 0
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10 : AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----A-AA----T-CGAGAGT-AT-T--GTGT--ATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTT-AAAAT--G-A-AAA-CTATGCAT---T------AAT-AAAAGAATAAATG-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11 : catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTCATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----A-AA----A-T----GT-GTAT-AGTG
gi|12 : -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA----CAC----GT-GT---AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTT-AACATAAA-A-TG--C-ATTTATC--T------AAT-AAAGAACTAATTGAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14 : GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----A-AA----T-C----TTGGT-T-AGTTTAGATTTT-a
gi|16 : tG---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-CATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAtgtatgcgcgagactataaattg
gi|17 : ttgggTTTGGTAGT-ACAGTTT-GATGCAAA-A-----T-ATTTCTATCT------AAT-TAAGAACTAACTG-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18 : gagca---T------AAT-AGAGACTTTATTG-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2 : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---AAC--GAAA--CCTTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-CATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT----C-AAT---T-C----GT-ATAC-AGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATT-AGCACAAA-A-AAA-C-ATTTCT---T------AAT-AAAGAACTAATTG-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3 : ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCAAC--AAGAGTCAATT---------TT----------CGTAA--ATGCTATCTATTTGCACT-------AAT-------TTGGTAACG-----T-------TGATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-CAT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----A-AA----T-C----TT-GTGT-AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATA-AAATC-ATGTTT---T------AATAAAAGATCTAATTG-AATTAT--AA
gi|4 : cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---AATAAGAGG--CATTCTAAATGCTATCTGCACTATTATTTAA--A-------------AACT-------TAT-------T--TA---GAACAAG-------TG---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-CTATC----T------AAT-AA
gi|5 : TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTA----A---TACAGGCCAGTCAGAATGACGATAGCATATAGCC-TACATTTTCCAA---AGCGTGAGG--CATTCTAAATGCTATCTGCACTATTATTCAG--A-------------AACT-------TAT-------T--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-CATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----A-AA----A-C--------T-TAAGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTT-AAAATAGA-ATAAA-T-ATAT-T---T------AAT-
gi|6 : agacctatgcagtaaaaatTCGCCTTACATTTTCCGA-----T--TAGT--CATTG---------CTAC-------ATGTATCTA-------------CACTCGATCTAAATCTGAAAAT--GT---G-----C-------T----TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAA-A--------ATAGAACTTCTT-TATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-T-GTTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAG-TTTGATATCTT----A-AA----A-C----TT-GTGT-AATGTATATTGT-AT------G------A
gi|7 : gtcaaaattcaagtgtgttataT---G-----C-------TG---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTCATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----A-AAAGCTT-T----GT------AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTG-AAAATAAA-A-TA--C-ATCT------------AAT-AA----CAAATTG-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8 : aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T---TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA------------T----A-AC----T-A----GT-GG-T--GTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTGAAAAT----------T-ATTGCT---TCAATCAAAT-AAAGAATTTATTG-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9 : TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACA-AA----T------GT-AA-T-GGT---GATTTTCAT------G------CA-A-AAATATTGATAGT--GGGTAT-AAAAT-AA-A-TGT-C-ATCTCTC--T------GAT-AAAAAATTAATTT-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A C AC G A CAATCA CGA GTGA GGCAA CG ACCTGTG C T GT C A TTCAATA GT C CTCTAAGA T CA C T T T GTCAAC AGT TAAATGCTATCTGCACTATTATTCAGAAACTTATTTTATTAACAAG ATG A CC T T G GG AA T T T GA TATTTTTT C TGT A A GT A T T CT C CTATAAAA A TT CAT CTGT T CCA GC A TTAC C TCGAGAGTATT A C GCCTGATA T C AT AAG G A T AAAT T G CTTCAATCA A A AA T A
blockSeqs : . . . . . . . . . A ACGCG G T . T . A GT T TGATTTA T AT C G T A AATAA A TAAATGCTATCTGCACTATTATTTAAAAACTTATTTAGAACAAG . . T T T C . . C T T AT CGA C CGT . . AC T . . AG . GTGTAAGA A TA C . . C CT . . . TTCGTATAC A . GCTGGAGA . G AA TT . A . TAAA . T CTATCT . . . T .
blockSeqs : . G . . . . A GT T CTAA A TG . A A A AGCGT G CTACATGTATCTACACTCGATCTAAATCTGAAAATGTGC . . T T C A . . A T . GT CGT T AT . . AC C . . CT . CTACAAA T TC C . . . GT . . . ATGTGTAT A . GT . G TT AA . A . TAAA . T ATCT . . . T .
blockSeqs : . . . . A A TG . A A A AAC G TTCGTAAATGCTATCTATTTGCACTAATTTGGTAACGT . . A T T A . . T . . GC CAT T G . . GT T . . CA . CTTTAAA A AC G . . . AT . . . TCTTGGTT C . GG . G AT AC . A . AAA . T CTCT . . . C .
blockSeqs : C T T TTTGACGTAGACACTAATTGTGT . . A T C A . . T . . GG AAA C T . . GC T . . CT . CATAAAA G TA T . . . AT . . . TCTTGTGT A . GA . A GT AG . A . AAA . G ATT . . . A .
blockSeqs : . . A T C C . . A . . TA TAA T T . . GT T . . CG . CTTACAT A TC C . . . AT . . . ACTTGTGT A . GC . G AT GG . A . TGT . A CTT . . . C .
blockSeqs : . . T . C A . . A . . AA CT T A . . AC C . . TC . CATAGA C TG C . . . G . . . AGCTTTGT A . GA . G TA AG . A . TG . A TTT . . . T .
blockSeqs : . T A . . C . . G T T . . . A A . . GT . ATGAA A TC T . . . T . . . CACGTGT A . GA . C G C . . . TA . C CT . . .
blockSeqs : . . . . . . . . . . . . . A C . . CG . TTA A A T . . . G . . . TAGTGGT T . GT . . A C . . . . . T TT . . .
blockSeqs : . . . . . . . . TG . C A G T . . . T . . . TGTAAT . . GC G . . . . . C . .
blockSeqs : . . CT . A . . T . . . . . . . ACTTA . . .
blockSeqs : . . . . . . . . . . . . . . ACTTA
blockSeqCons : GT AACG**** N* ACTTGTGT*********** TAAA*
originalCons : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---AAC--GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AA----T-C----GT-GT-T-AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-A-AAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
finalCons : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGAAACG----GAGA--CATTC---------TTTG-------ACGTAG--A-------------CACT-------AAT-------T--GT---G-----T-------TG---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-CATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----A-AAACTTGTGT-----------AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTT-AAAATAAA-ATAAA-C-ATNTCT---T------AAT-AAAGAACTAATTG-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA
Unaligned ( gi|15 ): GTGTAGGAATAAGATAAATTTGATAAAGAAATGATTTTTTGTATGCATTAAAAAAAATTTGACATATAAAAGTGTTGCGTTATTAAAGTATTTCAGTGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1 1 333333 222 2222 33333 11 4444444 11 2222222 11 33333333333 2 1111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222 22222222 111 2222222222 11111111111111 111 111111111 111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 6 88 3 3 888888 0 333 8888 33333 44 3333333 1 3 88 6 0 0 8 3333333 00 0 1 99999999999 0 0 1 22 0 1 1 1 7 3333333333333333333333333333333333333333333333333333333333333333333333333 99 99999999999999999999999999 5 99 1 1 2 66666 88 8 888 88 00000000 1 555 3 3 66 4 3 3 22 3 5555555555 2 77 555 6666 3 888 9 3 66666 33 0 2 88 3 22222222222222 4 1 55 222 777 666666666 1 777777777777 3 1 3 3 55 0 4
lowQualScore : ..................................................................................................... . . .. . . ...... . ... .... ..... .. ....... . . .. . . . . ....... .. . . ........... . . . .. . . . . . ......................................................................... .. .......................... . .. . . . ..... .. . ... .. ........ . ... . . .. . . . .. . .......... . .. ... .... . ... . . ..... .. . . .. . .............. . . .. ... ... ......... . ............ . . . . .. . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7 33 3 3 333333 7 333 3333 33333 00 2222222 0 2 00 5 8 8 0 8888888 66 6 4 22222222222 6 6 4 88 0 0 4 0 3 3333333333333333333333333333333333333333333333333333333333333333333333333 22 88888888888888888888888888 0 99 9 4 1 99999 44 0 666 66 88888888 7 777 6 6 77 9 3 1 22 1 7777777777 8 44 555 5555 1 555 1 1 99999 88 3 4 55 3 44444444444444 0 6 66 333 444 888888888 0 888888888888 1 2 6 6 00 1 4
consensus : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---A---ACG-GAGACAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-C-ATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----AAAA-CTTGTGT--AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAAATAAA---C-ATNTCT---T------AAT-AAAGAACTAATT-G-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
Reference ( family-1933 ) : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACGTT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-GAGTAAAC--GCGCANTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTGGTACAACCAACGCCAGTTCTGATTTA---TACATGCCAGTCAATACGACAACAGCNTTTNGCCTTACATTTTCCGA---A---ACG-GAGACAT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTN-TTCGGTCAGCGTTGACCTACTGAAGAACAT--T--TTATCGAATTTC-T-C-ATGNAAACG-----TTTTTTTCC--TAA-T-GCGCACGTG-CAAAACG-TGGTTTCNG-T-C-ATA-AAAGTCAGATNTT--TTTCATGGTTC----A-A---TAGTTTTGAT-TTTT----AAAA-CTTGTGT--AGTGTAGATTTT-AT------G------AA-AGAAANTTTGATAGT-AGAGTTTAAAATAAAATAAA---C-ATNTCT---T------AAT-AAAGAACTAATT-G-AATTAT--AAAAGTGTTGCGTAATT-AAAGTCTGGG
gi|1 : CGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---A---ACG-AA-ACCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-C-ATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT-----CAA-TTCGTATACAGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAAA-AAA---C-ATTTCT---T------AAT-AAAGAACTAATT-G-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGG
gi|10 : AATCG-TTGTTTCTGCT-C-ATA-GA-GTCAAATTTT--CTTCATTGTTC----A-A---TAGCTTTGAT-TTTT----AAAT-CGAGAGT--ATTGTGTATTTT-AT------G------TA-ACAGAATTTGATAGT-TTAGTTTAAAATGA---AAA---CTATGCAT---T------AAT-AAAAGAATAAAT-G-AATTAT--AAAATTGTTGCATAATT-ACAG
gi|11 : catttc-TTTGGTCAGCATTGACTTATTGGAGAAAATGGTAATTAT---ATTGC-TTC-ATG--AAC------TGTTTTCCC--GTA-TAGCGTAAGGG-CAACACG-TGGTTTAGG-T-C--TACAAAGTCAGATATT--CTGCATGGTTCCTGTATG---TAG-TTTGAT-TTGT----AAAA-TGTGTAT--AGTG
gi|12 : -TGGCTTCTG-T-C-TTT-AAAGTCTGATCTT------------C----A-A---T----TTGAT-ATTT----ACAA-CACGTGT--AGTGTAGAATTA-AT------G------GG-AGAGAAATTGATAGC-AAAGTTTAACATAAAAT--G---C-ATTTATC--T------AAT-AAAGAACTAATT-GAAATGAT--AAAAGTGTTACGTAATC-AGAGT
gi|14 : GTT-CAAAACG-GGGTTTCAG-T-T--TA----GTCAGAACTT--GTTCATGGTTC----A-A---TACTTTTGAT-TTTT----AAAT-CTTGGTT--AGTTTAGATTTT-a
gi|15 : tT-AAAAAA--AATTTG-ACATAT--AAAAGTGTTGCGTTATT-AAAGTtgtatgcgcgagactataaattg
gi|16 : gtgtaggaataagataaatttgataaagaaatgattttttgtatgcat-------G---TTATTT-TTCGGTCACCGTTGACCTATT---GAACAG--T--TTATTAAATTTCTT-C-ATGACAACG-----ATTTTCCCT--TAA-T-TCACATGTT-CAAAatttcagtgca
gi|17 : ttgggTTTGGTAGT-ACAGTTTGATGCAAAATA--------TTTCTATCT------AAT-TAAGAACTAACT-G-AATTAT--AAAAGTGTTGCTTATTT-AAAGTtcagag
gi|18 : gagca---T------AAT-AGAGACTTTATT-G-AATTAT--AAAAGTGTTGCACAATTAAAAGTCTact
gi|2 : cCGGCGCAGATACATATTCTGCGCTATTACTGCGGTCATATGCAGGAAATAGGTAACGACCGATAAGAGCAAACTATATTTAGTTTATATAATTACTAAAAAATTCCTGAAATACAACGTGCACTTGTACCACTTATATCTATATGAACACAAGAAGGAATAAAACTATGAATAAAATACTCACGCAGAGTAGTAGTGTTTATTATATACTTTACGATCAATTTAGCTCTGTGAACTAAAAGACACAGGTGAAAATGGCACATAACAAACATATTGTTTTTACTTTCATCTATAGATAAATTGTCTTGTTATGTTTATATCTTATATATATAAAGCAGGTGTTATCAACTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACTCATTACTGCATTTCACATTAATCACGTGATCACTTTATAGATGATATTTATTATAAGGTTGTACATTGGATTTATATTAAGAAATAGCCAACGTTAAGTTACACATGTAGATAATTGTTAAACTTAATTTTTCTAGCATATGTTTTTATATGTGTGTTGATAATAGCATAGTTTATATGGAAACGTGTATATATCTAAAGAAGACTACGTCACCATAAGTCCCCACATGTTATGTAAAACCTGTTGCTCCATTTTGTCAATGATCGGCATTTTGAAATCGTTTTGCTCCGGAAGGAACGATGACACCCTCCATGTAAGTCAGCGATTTTGATGTATCGATGTATGAAATGTATTCAAACAACACCATTACAGTTTAACATAACATATACAAGTTTAACATGACATATTACTACCAAGAGCTATACACAGGACATGTTTTATATATGTTTTATATAAGTAGTCATTGTTGTCATTTCTGTCAGTCGTCTTTACTGAATAGCATTGTTTAAAATATAGCCTTTTATTAATCACGAAATAATATTTTATGCCTGCAAGCATTCATCTTAATGAAACTATAATGTATTTAGAAATAATAAATGTCTTTTTTGTTTGGTTTCTTTTCTTTTAAAGAAAAAAACATTTGTGAAAATATATCATCGCTCCGTCGTATTCTTATATGCTTAACTAATAAAGCTGAATCGTAACTTTAACCCACTCGCTGCTTTCTTGTATCTTGTATATTTTTATTGTTGTTATAAACACCGTATTACTTTTATGGTGCGACACTTGAATAACTTAATG-TAATATATATCTTAAACAAACCAATTCCAACGATGGA--TATA-CATTTA-CAT------ACATT---TGCAA----ACATTTGAAAGTAAAATAAAATTG-----TGTATATTTCATTCATTAAAAGC-AAGTAA-------CACTTTAAGTAATCCGTCACAAATATTTAA-TA------ATTTG--ACAACCAACGCCAGTT-TGATTTA---TACATGCCAGGCAATACAA-AACAGCTTTTTGCTTTAAATCTTCCGA---A---ACG-AA-ACCT---TC---------T---------TTG-------ACGTAGA-------------CACT--AATT--GT---G-----TT-------G---TT-TTCCTTCAGTCCGCGTTGACCTACTGCAGAATAT--T--GTAACAAGTTAC-T-C-ATATAAACG-----TTTTTTTCC--TAA-T-GCACACGTG-CAAAACA-TGGTTTCTG-T-C-ATA-AAAGTAGGATATT--TTTCATGGTTC----A-A---TGGTTTTGAT-TTTT-----CAA-TTCGTATACAGTGTAGATTTT-AT------G------AA-AGAAATTTTAATTGT-AGAGATTAGCACAAAA-AAA---C-ATTTCT---T------AAT-AAAGAACTAATT-G-AATAAC--GATAGTGTTGCGAATTT-AAAGTCTGGGtta
gi|3 : ACACTAAAATACTTCAATAACAAAACATAC---AAATAAACCAATTAAATCAATAGAACTATAGCATTAAACATCAATCAATGTTCGATGTAAGTGAAGATTTAACAGAAATCTAAAAGAGGGCAATATATATTTAATTAATTTAAAGCCGACCAAAC--GCGCAGTTTAA----T---TCACTTATATTCAA-TA-------TTTGGTATAACTAA---------------A---TACATGTCAGTCAATAATA-AACCGTGTTTACTATTACAGTTTCCGAGTCA---ACAAGAGTCAA---TT---------T---------T----------CGTAAATGCTATCTATTTGCACT--AATTTGGTAACG-----TT-------GATGTT-CTT-TTCGGTCAGCGTTAACCTATTGAACAGCAT--T--TTATAGAATTTCTT-C-AT--AACCA-----TCATTTTCCTGTAA-T-GCGTA-GTATCAAAACA-TAGTTTCG-------------GTCAGGTCTT--CTTCAGTGTTC----A-A---TA-TTTTGAA-TTTT----AAAT-CTTGTGT--AGGGTCGATTTT-AT------G------CG-AGATAATTTGAAAGTAAGAGTTT-TAATTAAATAAAAT-C-ATGTTT---T------AATAAAAGATCTAATT-G-AATTAT--AA
gi|4 : cAAACCTGTGCAGTT-AA--AATTCG---CAAATACTCAAATT------ATTTGGTACGATTGCCATCAGTTCT---CTAAGATACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---A---ATAAGAGGCAT---TCTAAATGCTAT---------CTGCACTATTATTTAAA-------------AACT--TATT--TA---GAACAAGT-------G---TT-TTA-T---ATCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-C-ATGTAAAAA-----ATTTTTC------A-T-GCA-ATGCA-CAATACT-TGGTTTTCG-T-C----------------TT--CTTCACAATTC----A-A---TAATTTTGAT-ATTT----AAAA-CTTA-----AGTGTAGATTTT-AT------GCCTGATAA-TAGAAGTTTGATAGT--CAGTTTAAAATAGAATAAA---T-CTATC----T------AAT-AA
gi|5 : TCACAAA-ATTTAA-TATTCAATATTTGGTACAATCACCGTCAGTTCTAAT-------ACAGGCCAGTCAGAATGACGATAGCATATAGCCT-ACATTTTCCAA---A---GCGTGAGGCAT---TC---------TAAATGCTATCTGCACTATTATTCAGA-------------AACT--TATT--TT---A-----TTAACAAGTG---TT-TTA-T---GTCAGAATTGTCCTACTGAATAACAT--T--TTATTGAATTTT-T-C-ATGCAAATA-----ATTTTT-------A-T-GCA-ATGTG-CAAAACT-AGGTTT--------------AGCC------T--TTTCATGGTTC----A-A---TAATTTTGAT-ATTT----AAAA-CTTA-----AGTGTAGATTTT-ATGCTGGAG------AATAGAAAG-TTGATAGT--CAGTTTAAAATAGAATAAA---T-ATAT-T---T------AAT-
gi|6 : agacctatgcagtaaaaatTCGCCTTACATTTTCCGATT-AGTCATT-GCTACATGTATC---------TACAC-----TCG-------ATCTAAA-------------T-CTGAAAAT--GT---G-----CT-----------TT-TTA-TTCGGTACGCGTTGACCTGCAGCAGAAAAT-------A--GAACTTC-T-TTATGGAA--------TTTCTTTCCCGTAA-T-GCGCATAGG-CAAAATG-TG-TTTGTG-T-C-TTA-CATGTACTATGTTCATTT--TGTTTA----A-AC--TAGTTT-GATATCTT----AAAA-CTTGTGT--AATGTATATTGT-AT------G------A
gi|7 : gtcaaaattcaagtgtgttataT---G-----CT-------G---TT-GTT-TTTGGTCAGCGTTAAAAAA--AAACAACAT--T--TTATAGAATTTC-TTC-ATTAAAA-------------------AA-T------CATC-AAAAATG-TGGTTTCGG-T---ATG-AA-GTCAGATCCT--TTTCAACTTTT----A-ACCATA-TTTTGAT-TTTT----AAAAGCTT-TGT--AGTTGAGATTTT-AT------G------AG-AGTTAATTTGATAGT-GG--TTGAAAATAAAATA-----C-ATCT------------AAT-AA----CAAATT-G-AATTAT--AGAAGTGTTGCGgttcttttcacaacaaacgttttcattaa
gi|8 : aatcttcgtcaatacaatatttcttttgactggcaaTAATCTATTGAAGAACGT--T--TAATCGAATTTC-T----TAACAATATTTTTTTTTTTTCCA-TAA-T-GCGTGAATG-C-ACATGTTGGTTTTGG-T-CTATA-AAA-TCAGA-ATG--TTTTATGGTTC----A-A---TA-T-----------------AA-CTAGTGG--TGTGTTGATTTT-AT------G------TA-CCAAAA-TTGATAGT-AGGGTTTG----AAAAT------T-ATTGCT---TCAATCAAAT-AAAGAATTTATT-G-AATTATAAAAAAATGCTGCACAATT-AAAGT
gi|9 : TTTCC--AAAAG-GCACACGTG-CTAAACA-TGGTTTCTG-TGT-GTA-AGA-TCAGA-GTT--TTTCATGGCTC----A-A---TAATTTTGAT-TTTTTTACAAA------TGT--AATGGTGATTTTCAT------G------CA-A-AAATATTGATAGT--GGGT-----ATAAAATAAATGTC-ATCTCTC--T------GAT-AAAAAATTAATT-T-ACCTAT--AAATTTGTTGTGTTATG-AAAATatttagg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATATTCAACACACGGAACACCGCGAGTTTTAATACCGACAATGCATTAGCCAACATATGTCTGTCTTATTTTTCTGAAACGGGAAGGCATTTTAAATACTATCTGTACTAATTTTGAAACTAA