lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 444444444 1111 111 11111 11 1 22222222 111111 111111 111 222222 1111 1 111111 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 6666666666666666666666 1 1 11111 1 444 1 2222222 1111 222222222222222222222222222222222222222222222 11 11111 11 11 1111 11 11111 222 1 22 2222222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 44444 11111 11 22222 333333 2 111111
lowQualScore : 3 88 2 6 3 555 3 444444444 0 8 3 3333 444 66666 66 1 5 2 3 00000000 666666 000000 1 444 8888 333333 0000 0 1 8 3 4 1 5 3 999999 0 3 888 2 66 999 5 66 7 999 8 0 2 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 6 2222222222222222222222 0 5 88 3 1 3 6 9 2 66666 2 2 4 3 444 7 5 6 6 77 3333333 4444 8 444444444444444444444444444444444444444444444 3 9 6 7 11 3 6 6 66666 99 6 1 1 33 3 1 33 4444 44 99 11111 666 1 88 9999999999 99 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 77 66 1 55555 0 7 8 88888 2 33 9 3 00000 333333 7 0 2 3 44 6 3 999999 77
lowQualScore : . .. . . . ... . ......... . . . .... ... ..... .. . . . . ........ ...... ...... . ... .... ...... .... . . . . . . . . ...... . . ... . .. ... . .. . ... . . . . .................................................................................................................................... . . ...................... . . .. . . . . . . ..... . . . . ... . . . . .. ....... .... . ............................................. . . . . .. . . . ..... .. . . . .. . . .. .... .. .. ..... ... . .. .......... .. ......................................................................................................................... .. .. .. . ..... . . . ..... . .. . . ..... ...... . . . . .. . . ...... ..
lowQualScore : 0 55 5 5 2 222 0 555555555 2 0 2 0000 000 77777 00 6 9 5 2 77777777 444444 999999 4 555 5555 000000 6666 8 4 1 7 0 7 7 0 222222 1 4 888 0 99 444 0 33 1 666 0 8 2 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 0 4444444444444444444444 2 0 66 5 7 7 7 3 2 77777 5 7 0 5 777 0 0 1 0 99 8888888 2222 3 333333333333333333333333333333333333333333333 5 8 0 3 88 7 7 7 77777 22 7 0 0 33 2 7 00 2222 00 22 88888 222 2 77 2222222222 22 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 88 44 66 4 33333 7 3 3 88888 0 88 0 2 88888 555555 5 2 0 2 00 5 2 555555 88
consensus : AAACNACAATTATTTAGATAGTATACAGTAGTAAATCAGTTNGAT-A--C---AAGTTACCGAATGAAA-TTNATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTNAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTGATA-CAAANAATTATACTAATAAATAT------CCAACACCTGC---TTCTGACTTATTA--AAAAC--ACT-ATTATTTCAATCAATTTTATTA-AGATTACTGTGTTTTGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAATAT-------TGNTT--------GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCAT-CAACTTACGT-----CAAAACTNGCGTGAATNTCATTTACAA-ANTGTTTATTCTGCCACTAAAATGAACAAAATCCCAA--TCCGAATACACAACCTGATTT----CTTTC----------------------AT---------------------TTTTCTCTAATCTCACTCTCCATTTCCACTTTATTTCCCTCAACCTCTCTCCTATT-C-CCT-----CCC--TCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTT-TCTTCCTTTCTCC----CTTACTA--ACTTTCTT--T--TTTTTCA--TCCCTTTAACTATTTTATTTTCTTTT-TAACTC----------AGTTT--TTCTTTCCTT--------TCT-TNT-------------T-TCCACA-TA---TTTTCT-CTTTCTTTCT-C-AA-AATAGTCTACATTATTT--------------------------ATAAGATACAATGTATAATCCCTATAAATATGGCTCTGTTGTTTATGTCATAATATATCAGCTGATAAAATTGTTGACAGAATTAAGTAACAATCATAAAN-T--TTTTGT--TCTGAATTAAAATAAAACGA-GATCAAATTGAA---GAAAAAAGAGTTGTATTCAAAAGAAATATATNAACTTTTTTT-ACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( gi|1 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGAT-T--C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTGATA-CAAACAATTATACTAATAAATAT------CCAACACTTGC---TTCTGACTTATCA--AAAAC--ACT-ATTATTTCAATCAATTTTATTA-AGA-TACTGGGTTTTGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA--------GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCAT-CACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA--TCTGAATATTCAACCTGATTT----CATTC----------------------TT---------------------TTTTCTTTAATCTCACTCTCCATCTCCACTTTATTTCGTTCAACCTCTCTCCTATT-C-CCT-----CCT--TCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCC----CTTATTA--ACTTTCTT--T--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTCATAACTC----------AGTTT--TTCTTTCCTT--------TCT-TAT-------------T-TCC---------TTTTCC-CTTTCTCTCTAC-AA-AACAATCCACATTATTT--------------------------ATAAGA-------TATAATCCCT-TAAATATGGCTCTGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCATAAAT-T--TTTCGT--TCTTAATTAAAATAAAACGA-GATCAAATTAAAC--GAAAACAGAGTCGTATTCAAAAGAAATATATCAACTTTTTTT-ACA--AACTCCTTTTGACTACATACAATAGGAA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGAT-A--C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTGATA-CAAACAATTATACTAATAACTAT------CCTACACTTGC---TTATGACTTACCA--AAAAC--ACT-ATCATTTCAATCAATTTTATTA-AGA-TACTGTGTTTTGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT--------GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCAT-CACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAA-TTTGTTTATACTGCCACTAAAATGAACAAAAATCCAA--TCTGAATATTCAACCTGATTT----CATTC----------------------AT---------------------TTTTATTTAATCTCACTCTCCATTTCCACTTTATTTCGTTCAACCTCTCTCCTATT-C-CCT-----CCT--TCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCC----CTTATTA--ACTTTCTT--T--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTTTAACTC----------AGTTT--TTCTTTCCTT--------TCT-TAT-------------T-TCC---------TTTTCC-CTTTCTCTCTACAAA-AAAAAGCCACATTATTT--------------------------ATAAGA-------TATAAT-CCT-TAAAAATGGCTTTGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCATCAAT-T--TTTCGT--TCTTAATTAAAATAAAACGA-GATCAAATAAAACAAAAAAAAAGAGTTGTATTCAAAAGAAATATATTAACTTTTTTT-AC
gi|8 : AAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAA-A-ATG----TATAACAGTTACTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGAT-A--CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCA--------CAAAACTGTGTTACTGTATTCTT--TTTTTAAA----TG----TATA------AATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTTATA-AAAACAATTATACTAATAAATAT------CCAACACCTGC---TTCTGACTTATTA--AAAA---ACT-ATTCTTTCAATCAATGTTATTA-TGATTACTG----TTGTTGGTT
gi|11 : AGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCT-ATGTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATT-ATGATTTTATATAATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTGA----AAATAAgttggg
gi|19 : ATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTAac
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCA--------CAACATTGTGT------AT--TC--TTTTTAAA-ATATG----TATA------ACTGTACATG
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCA--------CAAAACTGTGT------AT--TC--TTTTTAAA-ATATG----TATA------ACTATACATGT----GTTATATTTGTCTGGTTAATTTAtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|14 : AGACGTTAAAGCT--------CAAAATTGTGT------ATTATT--TTT--AAA-ATATG----TATA------ACTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAA---TTGCGGATTCTAAC--ACCA--ACCTCTGACTTATTATTTCAATAAATTTTA
gi|12 : AA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTGGTA-CAAACAATTATAATAATTGAT----------AAC---TGC---TTCTGACTTATTA--AAAAC--ACT-ATTATTTCAATCAATTTTATTA-ATA-TACTGTGATTTGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAat
gi|3 : A-A-GTG----TGTA------ACTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTAATA-CAAAAAATTAAACTGATAAATAT------CCAACACCTGC---TACTGACTTATTA--AAAAC--ACT-ATTATTACATTCAATTTTATTA-AGATTACTGTGTTTTGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAtatagttccttgata
gi|4 : A-A-GTG----TGTA------ACTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTAATA-CAAAAAATTAAACTGATAAATAT------CCAACACCTGC---TACTGACTTATTA--AAAAC--ACT-ATTATTACATTCAATTTTATTA-AGATTACTGTGTTTTGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAtataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|10 : AACACCAAC---TTCTGACTTATTAGTAAAAA--A---ATTATTTCAATAAATTTTAATA-TAA----------TTACTGTTTTCCATTAC-GTACATAACtataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|18 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACACCTGC---TTCTGATTTATTA--AAAAA--AAA-ATTATTTCAATCAATTTTATTATGGT-TACTCATTTGTGCTGTT
gi|3 : taaTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT--------GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCAT-CAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAA-AATGTTTAT-CTGGCACTTAAATGAGCAAATTCCCAA--TCTGATTACACAACCTGATTT----CTTTC----------------------AT---------------------TTTTCTCTAATCTCACTCTCCATTTCCATTTT-TTCCCCTCAACCTCTCTCCTATT-C-CCT-----TCC--TCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCC----CTTA-TA--ACTTTCTT--T--TTTTTTACTTCTCTTTAACTATTTTATTTTCTTTT-TAACTC----------AGCTT--TTCTTTCCTTAATTAAGATTT-TTT-------------TATCCACAATA---TTTTAT-CTTTCTTTTT--------TGGTTTA---TATTG--------------------------ATAAGATACAATGTATAATCCCTATAAA-ATAGCTCT
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT--------GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCAT-CAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAA-AATGTTTAT-CTGGCACTTAAATGAGCAAATTCCCAA--TCTGATTACACAACCTGATTT----CTTTC----------------------AT---------------------TTTTCTCTAATCTCACTCTCCATTTCCATTTT-TTCCCCTCAACCTCTCTCCTATT-C-CCT-----TCC--TCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCC----CTTA-TA--ACTTTCTT--T--TTTTTTACTTCTCTTTAACTATTTTATTTTCTTTT-TAACTC----------AGCTT--TTCTTTCCTTAATTAAGATTT-TTT-------------TATCCACAATA---TTTTAT-CTTTCTTTTT--------TGGTTTA---TATTG--------------------------ATAAGATACAATGTATAATCCCTATAAA-ATAGCTC
gi|15 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT--------GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCAT-CAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAA-AATGTGTATTCTGCCACTAAAATGAACAAAACCCCAA--TC
gi|5 : ATTAAAACCGTTATAGTAAATGACAATAT-------TGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCAT-CAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT---TACACAACCTGATAT----CTTTC----------------------AT---------------------TTTTCTCTAACCTCACTCTCCATTTCCATTTTATTTCCTTCAATCTCTCTCCTATT-C-CCT-----CCT--TTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCC----CTTGCTA--ACTTTCTTTAT--TTCTTCT--TCCCTTTAGCTATTTTATTTTCTTTT-TAACTC----------AGTTT--TCCTTTCCTT--------TCT-TTT-------------T-TTCG--------TCCTCT-CTTTCTTCCTAC-AA-AA-ATTCAACATTATTTTTTCTTTCTTATATTTCTTTATATCGATAAGA-------CATAA-GCCT-AAAATATGG--CTGTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAA-T--GTTTATGATATGAATTAAAATAAAACGA-CATCAAATTGAA---GAAAAAAAAATCGGATTCAAAAGAAGTATATGAACTTTTTTT-TTAATAACTCCTTTTGACTACACACAATAGGAActtac
gi|6 : AGGATGCATACAG-TGAAAAAGAAACGCATTCAT-TTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA--TCCTTACAT--AACCTGATTTATTTCATTT----------------------TTCTCTGATATCTCTACGTTTCTTTCTCTCTAA-CTCACTCTCCATTTCCACTTTATTTCCCTCGA--TCTCTTCTATTAC-CCT-----CCC--TCACTATATG-TATCACTCTTTATCTG-TTCCAGCCCTAATTCCAT--------CTTTCTCC----CTTACCA--ATTTTCTT--CCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCATAGCTCTGTTTTCCTCAGTTTCCTTTTTTCCTTC-------TCTCTATCACCCTACAAAACT-TCCACATTATTTTTTTCTTCTTTCTTTCTTT---------TTTTCTTTATATCG------------------------ATCA-A-------TATAATCCCT-AAAAT---GCTCTGTTGTTAATGTCATAAGATATCAAC---TAAAATTGTTGACAGAATTTAGTAACAATCATAAAA-TGCTTTTGT--TCTGAATTAA------------ATCAAATT------GTAAA---AGTTGT--------GA-----ACCG--TTTATTA-ACA--AACTCCTTTTGACAAC--ACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : tattggaacaTATA-TGCCACTAAAATAAACAAAATCCTAA--TCCTTACA--CAATCTAATTT----CTTTCATTGTCTCTAATTTCTCTGTATTTCG-------------------TTTTCTCTAA-CTCACTTTCCATTTC-ACTTAATCTCTCTCCATCTCTCTGCAATT-CTCCTATTCACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTT-TCAATACTTTCTT--T--TTTCTC----CCATTT---TATTT--TCTTAT----TAACAT----------A-TTT--TTCTGT--------------T-TA-----------------CC---------CCCTCT-CTTTCTCTCTTC-AACAATAACCTAaaacacgttacacagaataatgaag
gi|13 : tacattttttaaaaaatgtccataaacaattgtattacttaatagaaatgAAATGT--TTTTGT--TCTGAATTAAAATAAAA--ATGATCAAATTGAAA--AAAAA-AGGGTTTTATTCAAAAGAAATATCTGAACTTTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAttcttttttttcccttctttctttatgtttttctttatatcgataatatataatccctaatacatcgctcatattg
gi|16 : agactcaaaTTGACTACATACAATAGGAAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 1 111111 111111 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4444444444444 1111 11111 222 1111111 44444444444444444444444444444 2222222222 1111 22222222 1 11 11111 11 222 3333333333 000000000000000000000000000000000000000000000000000000000000 1111 99999999999999999999999999999999999999999999999999999999 1 1 1 11 22 11 2222222 11 11
lowQualScore : 11 7 3 0 66 1 999999999 2 6 1 9999 111 44444 1 1 0 88888888 444444 3 66 0 4 000000 000000 7777 9999 1 5 0 1 4444444444444444444 66 3 1 0 3 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8888888888888 4444 1 0 1 0 44444 1 1 1 1 3 5 66 5 111 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 1 0 88 22222 77 55 111 5 5 7777777777 666666666666666666666666666666666666666666666666666666666666 1 2222 88888888888888888888888888888888888888888888888888888888 9 4 1 5 5 88 2 4 1 22 11 0 8888 0000000 5 0 1 99 33 0
lowQualScore : .. . . . .. . ......... . . . .... ... ..... . . . ........ ...... . .. . . ...... ...... .... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ............. .... . . . . ..... . . . . . . .. . ... ....... ............................. . . .......... .... . . ........ . . . .. . . . .. ..... .. .. ... . . .......... ............................................................ . .... ........................................................ . . . . . .. . . . .. .. . .... ....... . . . .. .. .
lowQualScore : 77 3 2 8 66 0 888888888 8 7 0 3333 777 33333 0 1 1 11111111 444444 2 99 1 5 555555 555555 7777 4444 0 0 4 0 3333333333333333333 11 9 1 8 2 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555555555 2222 7 1 7 4 33333 0 4 0 0 2 0 99 0 444 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 4 1 00 00000 99 77 111 7 7 1111111111 333333333333333333333333333333333333333333333333333333333333 7 1111 99999999999999999999999999999999999999999999999999999999 0 1 7 7 0 55 5 0 0 00 00 8 8888 0000000 6 6 0 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT--TGT--------TTGC----GAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGA-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCA-TTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTCT----------TTCCTT--------T----CTTTT-------------------T-TCCACAAT-A-----------TTTTCC----CTTTCTTTCTAC--AAAATA-GTCTACATTAT----------TTATAT------AGAT--ACAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTTCGT--TCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAACNACAATTATTTAGATAGTATACAGTAGTAAATCAGTTNGATA---C---AAGTTACCGAATGAAA-TTNATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAANAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAATATTGN--------TTGC----GAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTNGCGTGAATNTCATTTACAAANTGTTT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGAATACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCA-TTT-TCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTCT----------TTCCTT--------T----CTTNT-------------------T-TCCAC-AT-A-----------TTTTCT----CTTTCTTTCT-C--AAAATA-GTCTACATTAT----------TTATA-------AGAT--ACAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATATCAGCTGATAAAATTGTTGACAGAATTAAGTAACAATCATAAANT--TTTTGT--TCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTTGTATTCAAAAGAAATATATNAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGAT-ACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT--TGT--------TAGC----GAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCA-TTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTCT----------TTCCTT--------T----CTTAT-------------------T-TCC------------------TTTTCC----CTTTCTCTCTAC--AAAACA-ATCCACATTAT----------TTATA-------AGA---------TATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCATAAATT--TTTCGT--TCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCAC--------AACATTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCTAT-GTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATTATGATTTTATATA------ATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATGTTTTTGT--TCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCTC--------AAAATTGTGT------ATTATT--TTT--AAAATATG------TATA------A----CTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAA-----TTGCTTGGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAAAATGTGT-ATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCAC--------AAAACTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGAT-ACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT--TGT--------TTGC----AAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTGTTT-ATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCA-TTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTCT----------TTCCTT--------T----CTTAT-------------------T-TCC------------------TTTTCC----CTTTCTCTCTACAAAAAAAA-G-CCACATTAT----------TTATA-------AGA---------TATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCATCAATT--TTTCGT--TCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : AA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT--TGG--------TTGC----GAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTT-TCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTCT----------TTCCTTAATTAAGAT----TTTTT-------------------TATCCACAAT-A-----------TTTTAT----CTTTCTTTTT--------TG-GTTTA---TAT----------TGATA-------AGAT--ACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT--TGG--------TTGC----GAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTT-TCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTCT----------TTCCTTAATTAAGAT----TTTTT-------------------TATCCACAAT-A-----------TTTTAT----CTTTCTTTTT--------TG-GTTTA---TAT----------TGATA-------AGAT--ACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGG----GAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT--TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCA-TCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCCT----------TTCCTT--------T----CTTTT-------------------T-TTCG-----------------TCCTCT----CTTTCTTCCTAC--AAAA-A-TTCAACATTATTTTTTCTTTCTTATATTTCTTTATATCGATAAGACATAAGCC-TA-AAATATGGCT---GTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAAT--GTTTATGATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT--TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCCA-GCCCTAATTCCA-T--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT------TTCCTT--------TTTTCCTTCTCTCTATCACCCTACAAAACT-TCCAC-ATTA-----------TTTTTTTCTTCTTTCTTTCT-T----------TTT---TTCT----------TTATAT------CGAT---CAAT--ATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAACT---AAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTTTGT--TCTGAATTAA------------ATCAAATTG----------TAAAAGTTG-----------------TGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : AAATGTAT-AT---GCCACTAAAATAAACAAAATCCTAA-TCCT--TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCG-TTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTCTGTTTACCCCCTCTCTT--------T----CTCTC-------------------T-TCAACAAT-AACCTATTCTTTTTTTTC----CCTTCTTTCT-T------TATGTTT---TTCT----------TTATAT------CGAT----AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAAA-ATG------TATAACAGTTA----CTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGTTACTGTATTCTT--TTTTTAAA---TG------TATA------A----ATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 1 111111 111111 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555555 11111 333 1111111 44444444444444444444444444444 2222222222 1111 22222222 11111 11 222 3333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333333333 1 1 1 11 1 111 2222222 11 11
lowQualScore : 7 3 0 66 0 999999999 6 1 9999 111 44444 1 1 1 0 88888888 444444 3 66 0 4 000000 000000 7777 9999 1 5 0 1 4444444444444444444 66 3 1 0 3 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 1 6 1 0 1 0 44444 0 1 1 0 1 5 66 5 555 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 0 88 22222 77 55 111 5 5 7777777777 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 55555555555 9 4 1 5 5 88 2 1 0 8 555 0 8888 0000000 0 222 0 0 99 33 0
lowQualScore : . . . .. . ......... . . .... ... ..... . . . . ........ ...... . .. . . ...... ...... .... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ......... . . . . . . ..... . . . . . . .. . ... ....... ............................. . . .......... .... . . ........ . . . .. . . .. ..... .. .. ... . . .......... ..................................................................................................................... . ........... . . . . . .. . . . . ... . .... ....... . ... . . .. .. .
lowQualScore : 3 2 8 66 6 888888888 7 0 3333 777 33333 1 0 1 1 11111111 444444 2 99 1 5 555555 555555 7777 4444 0 0 4 4 3333333333333333333 11 9 1 8 2 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 5 7 7 1 7 4 33333 7 4 0 8 0 0 99 0 666 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 1 33 00000 99 77 111 7 7 1111111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 33333333333 0 1 7 7 0 55 5 0 6 0 666 8 8888 0000000 6 000 8 8 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGA-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTCT----------TTCCTT--TT------------T----CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTTNC----CTTTCTTTCT-------ATGGTTTA-A-TTATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGA-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTCT----------TTCCTT----------------T----CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTTCC----CTTTCTTTCTAC--AAAATAGTCTACA-TTATTTATATAGATACAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGAT-ACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA-GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTCT----------TTCCTT----------------T----CTTAT-------------------T-TCC-----------------------------TTTTCC----CTTTCTCTCTAC--AAAACAATCCACA-TTATTTATA-AGA-------TATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCAT-AAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCAC--------AACATTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCTAT-GTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATTATGATTTTATATA------ATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATG-TTT-TTGTTCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCTC--------AAAATTGTGT------ATTATT--TTT--AAAATATG------TATA------A----CTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT-GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAAAATGTGT-ATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCAC--------AAAACTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGAT-ACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT-GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTGTTT-ATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTCT----------TTCCTT----------------T----CTTAT-------------------T-TCC-----------------------------TTTTCC----CTTTCTCTCTACAAAAAAAAG-CCACA-TTATTTATA-AGA-------TATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCAT-CAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : AA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTCT----------TTCCTTAATTAAGA--------T----TTTTT-------------------TATCC-ACAA-----------TA-----------TTTTAT----CTTTCTTTTT--------TGGTTTA----TATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTCT----------TTCCTTAATTAAGA--------T----TTTTT-------------------TATCC-ACAA-----------TA-----------TTTTAT----CTTTCTTTTT--------TGGTTTA----TATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT--TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCCT----------TTCCTTTCTTTTTTTCGTCCTCT----CTTTC-------------------T-TCCTACAAAAATTCAACATTA-----------TTTT--------TTCTTTCT-------------TATATTTCTTTATATCGAT--AAGACATAA-GCCTA-AAATATGG--C-TGTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAATG-TTTAT-GATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT--TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCCA-GCCCTAATTCCAT--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT------TTCCTT----------------TTTTCCTTCTCTCTATCACCCTACAAAACT-TCC-ACAT-----------TA-----------TTTTTTTCTTCTTTCTTTCT--------T--TTT----TTCTTTATATCGAT-CAAT--ATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAACT---AAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTT-T-GTTCTGAATTAA------------ATCAAATTG-----------------------TAAAAG---T-TGTGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : AAATGTAT-AT---GCCACTAAAATAAACAAAATCCTAA-TCCT--TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTCTGTTTACCCCCTCTCTT----------------T----CTCTC-------------------T-TCA-ACAA-----------TAACCTATTCTTTTTTTTC----CCTTCTTTCTTT-----AT-GTTT----TTCTTTATATCGAT--AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAAA-ATG------TATAACAGTTA----CTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGTTACTGTATTCTT--TTTTTAAA---TG------TATA------A----ATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 111 222222 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555555 11111 333 1111111 44444444444444444444444444444 2222222222 1111 22222222 11111 11 222 1111 1111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222 7777777777777777777777 22 333333 1 1 1 11 1 111 2222222 11 11
lowQualScore : 7 3 0 66 0 999999999 6 1 9999 111 44444 1 1 1 1 88888888 444444 3 66 0 222 7777 000000 9999 1 5 0 1 4444444444444444444 66 3 1 0 3 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 1 6 1 0 1 0 44444 0 1 1 0 1 5 66 5 555 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 0 88 22222 77 55 111 5 5 2222 5 8888888 000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 77 7777777777777777777777 1 00 555555 9 4 1 5 5 88 3 1 0 8 555 0 8888 0000000 0 222 0 0 99 33 0
lowQualScore : . . . .. . ......... . . .... ... ..... . . . . ........ ...... . .. . ... .... ...... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ......... . . . . . . ..... . . . . . . .. . ... ....... ............................. . . .......... .... . . ........ . . . .. . . .. ..... .. .. ... . . .... . ....... ................................................................................. . .. ...................... . .. ...... . . . . . .. . . . . ... . .... ....... . ... . . .. .. .
lowQualScore : 3 2 8 66 6 888888888 7 0 3333 777 33333 1 0 1 9 11111111 444444 2 99 1 444 7777 999999 4444 0 0 4 4 3333333333333333333 11 9 1 8 2 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 5 7 7 1 7 4 33333 7 4 0 8 0 0 99 0 666 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 1 33 00000 99 77 111 7 7 1111 7 6666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444444444 3 33 777777 0 1 7 7 0 55 2 0 6 0 666 8 8888 0000000 6 000 8 8 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGA-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTTNCCTTTCTTTC--TAC-------GG-----TTTA--TTATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCGA-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTTNCCTTTCTTTC--TAT-------GG-----TTTA-ATTATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGAT-ACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA-GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTC----T-TT-------CCTT--T--------------------CTTAT-------------------T-TCC-----------------------------TTTTCCCTTTCTCTC--TAC-------AAAACAATCCACATTATTTATA-AGAT-------ATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCAT-AAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCA--------CAACATTGTGT------AT--TC--TTTTTAAA-ATATG----TATA------ACTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCT-ATGTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATT-ATGATTTTATATAATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATG-TTT-TTGTTCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCT--------CAAAATTGTGT------ATTATT--TTT--AAA-ATATG----TATA------ACTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT-GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAAAATGTGT-ATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCA--------CAAAACTGTGT------AT--TC--TTTTTAAA-ATATG----TATA------ACTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCA--------CAAAACTGTGT------ATTATT--TTTTTAAA-A-ATG----TATA------ACTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGAT-ACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT-GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTGTTT-ATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAATATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTTCCCTTTCTCTC--TACAAAAAAAAG-----CCAC-ATTATTTATA-AGA-------TATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCAT-CAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : A-A-GTG----TGTA------ACTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTTATCTTTCTTTT--T-T-------GG-----TTTA---TATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-A-GTG----TGTA------ACTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTGATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTTATCTTTCTTTT--T-T-------GG-----TTTA---TATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT--TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCC----T-TT-------CCTT--TC----TTTTTTTCGTCCTCTCTTTC-------------------T-TCCTACAAAAATTCAACATTA-----------TTTTTTCTTTCTT-A--TAT--------------------TTCTTTATATCGAT--AAGACATAAGCC-TA-AAATATGGCT---GTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAATG-TTTAT-GATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT--TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCC-AGCCCTAATTCCAT--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT-TT-------CCTT--TT----TTC------------CTTCTCTCTATCACCCTACAAAACT-TCC-ACAT-----------TA-----------TTTTTTTCTTCTTTC--T-T-------TC-----TTTT-TTTCTTTATATCGAT-CAA--TATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAAC---TAAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTT-T-GTTCTGAATTAA------------ATCAAATTG-----------------------TAAAAG---T-TGTGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : AAATGTAT-AT---GCCACTAAAATAAACAAAATCCTAA-TCCT--TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTC----TGTTTACCCCCTCTC--TT----T--------------CTCTC-------------------T-TCA-ACAA-----------TAACCTATTCTTTTTTTTCCCTTCTTTCTTTAT--------G-----TTT---TTCTTTATATCGAT--AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAA-A-ATG----TATAACAGTTACTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCA--------CAAAACTGTGTTACTGTATTCTT--TTTTTAAA----TG----TATA------AATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 1 111111 111111 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555555 11111 3333 1111111 44444444444444444444444444444 2222222222 1111 22222222 11111 11 222 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 777777777777777777777777777 33333333333 1 1 1 11 1 111 2222222 11 11
lowQualScore : 7 3 0 66 0 999999999 6 1 9999 111 44444 1 1 1 0 88888888 444444 3 66 0 4 000000 000000 7777 9999 1 5 0 1 4444444444444444444 66 3 1 0 3 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 1 6 1 0 1 0 44444 0 1 1 0 1 5 66 5 5555 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 0 88 22222 77 55 111 5 5 2222 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333 333333333333333333333333333 77 88888888888 9 4 1 5 5 88 3 1 0 8 555 0 8888 0000000 0 222 0 0 99 33 0
lowQualScore : . . . .. . ......... . . .... ... ..... . . . . ........ ...... . .. . . ...... ...... .... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ......... . . . . . . ..... . . . . . . .. . .... ....... ............................. . . .......... .... . . ........ . . . .. . . .. ..... .. .. ... . . .... . ............................................................................................ ..... ........................... .. ........... . . . . . .. . . . . ... . .... ....... . ... . . .. .. .
lowQualScore : 3 2 8 66 6 888888888 7 0 3333 777 33333 1 0 1 1 11111111 444444 2 99 1 5 555555 555555 7777 4444 0 0 4 4 3333333333333333333 11 9 1 8 2 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 5 7 7 1 7 4 33333 7 4 0 8 0 0 99 0 6666 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 1 33 00000 99 77 111 7 7 1111 7 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111 111111111111111111111111111 00 44444444444 0 1 7 7 0 55 2 0 6 0 666 8 8888 0000000 6 000 8 8 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTC--T-----AC--------GGTT--TATT-ATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTC--T-----AC--------GGTT--TATT-ATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGAT-ACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA-GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTG-AATATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTC--TACAAAAC--------AATCCACATT-ATTTATA-AGA-------TATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCAT-AAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCAC--------AACATTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCTAT-GTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATTATGATTTTATATA------ATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATG-TTT-TTGTTCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCTC--------AAAATTGTGT------ATTATT--TTT--AAAATATG------TATA------A----CTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT-GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAAAATGTGT-ATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCAC--------AAAACTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGA-TACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT-GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTGTTT-ATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAA-TATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTC--T-----ACAAAAAAAAGCCA--CATT-ATTTATA-AGA-------TATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCAT-CAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : AA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTT--T------T--------GGTT--TA-T-ATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTT--T------T--------GGTT--TA-T-ATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT---TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCC----T-TT-------CCTT--TC----TTTTTTTCGTCCTCTCTTTC-------------------T-TCCTACAAAAATTCAACATTA-----------TTTT----TTCTTTCTT----------A---------------TATTTCTTTATATCGAT--AAGACATAAGCC-TA-AAATATGGCT---GTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAATG-TTTAT-GATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT---TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCC-AGCCCTAATTCCAT--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT-TT-------CCTT--TT----TTC------------CTTCTCTCTATCACCCTACAAAACT-TCC-ACAT-----------TA-----------TTTTTTTCTTCTTTCTTTC--T-----------------TT--TTTT-CTTTATATCGAT-CAA--TATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAAC---TAAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTT-T-GTTCTGAATTAA------------ATCAAATTG-----------------------TAAAAG---T-TGTGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : AAATGTAT-AT---GCCACTAAAATAAACAAAATCCTAA-TCCT---TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTC----TGTTTACCCCCTCTC--TT----T--------------CTCTC-------------------T-TCA-ACAA-----------TAACCTATTCTTTTTTT----TCCCTTCTTTCTTT-----AT---------GTT--T-TT-CTTTATATCGAT--AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAAA-ATG------TATAACAGTTA----CTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGTTACTGTATTCTT--TTTTTAAA---TG------TATA------A----ATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 1 111111 111111 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555555 11111 3333 1111111 44444444444444444444444444444 2222222222 1111 22222222 11111 11 222 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 777777777777777777777777777 33333333333 1 1 1 11 1 111 2222222 11 11
lowQualScore : 7 3 0 66 0 999999999 6 1 9999 111 44444 1 1 1 0 88888888 444444 3 66 0 4 000000 000000 7777 9999 1 5 0 1 4444444444444444444 66 3 1 0 3 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 1 6 1 0 1 0 44444 0 1 1 0 1 5 66 5 5555 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 0 88 22222 77 55 111 5 5 2222 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333 333333333333333333333333333 77 88888888888 9 4 1 5 5 88 3 1 0 8 555 0 8888 0000000 0 222 0 0 99 33 0
lowQualScore : . . . .. . ......... . . .... ... ..... . . . . ........ ...... . .. . . ...... ...... .... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ......... . . . . . . ..... . . . . . . .. . .... ....... ............................. . . .......... .... . . ........ . . . .. . . .. ..... .. .. ... . . .... . ............................................................................................ ..... ........................... .. ........... . . . . . .. . . . . ... . .... ....... . ... . . .. .. .
lowQualScore : 3 2 8 66 6 888888888 7 0 3333 777 33333 1 0 1 1 11111111 444444 2 99 1 5 555555 555555 7777 4444 0 0 4 4 3333333333333333333 11 9 1 8 2 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 5 7 7 1 7 4 33333 7 4 0 8 0 0 99 0 6666 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 1 33 00000 99 77 111 7 7 1111 7 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111 111111111111111111111111111 00 44444444444 0 1 7 7 0 55 2 0 6 0 666 8 8888 0000000 6 000 8 8 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTC--T-----AC--------GGTT--TATT-ATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTC--T-----AC--------GGTT--TATT-ATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGAT-ACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA-GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTG-AATATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTC--TACAAAAC--------AATCCACATT-ATTTATA-AGA-------TATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCAT-AAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCAC--------AACATTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCTAT-GTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATTATGATTTTATATA------ATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATG-TTT-TTGTTCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCTC--------AAAATTGTGT------ATTATT--TTT--AAAATATG------TATA------A----CTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT-GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAAAATGTGT-ATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCAC--------AAAACTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGA-TACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT-GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTGTTT-ATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAA-TATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTC--T-----ACAAAAAAAAGCCA--CATT-ATTTATA-AGA-------TATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCAT-CAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : AA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTT--T------T--------GGTT--TA-T-ATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAAAATGTTT-A-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTT--T------T--------GGTT--TA-T-ATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAAAATTTGT-ATTCTGCCACTATAACGAACAAAATCCCAAATCCT---TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCC----T-TT-------CCTT--TC----TTTTTTTCGTCCTCTCTTTC-------------------T-TCCTACAAAAATTCAACATTA-----------TTTT----TTCTTTCTT----------A---------------TATTTCTTTATATCGAT--AAGACATAAGCC-TA-AAATATGGCT---GTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAATG-TTTAT-GATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAAATTTTGT-ATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT---TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCC-AGCCCTAATTCCAT--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT-TT-------CCTT--TT----TTC------------CTTCTCTCTATCACCCTACAAAACT-TCC-ACAT-----------TA-----------TTTTTTTCTTCTTTCTTTC--T-----------------TT--TTTT-CTTTATATCGAT-CAA--TATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAAC---TAAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTT-T-GTTCTGAATTAA------------ATCAAATTG-----------------------TAAAAG---T-TGTGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : AAATGTAT-AT---GCCACTAAAATAAACAAAATCCTAA-TCCT---TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTC----TGTTTACCCCCTCTC--TT----T--------------CTCTC-------------------T-TCA-ACAA-----------TAACCTATTCTTTTTTT----TCCCTTCTTTCTTT-----AT---------GTT--T-TT-CTTTATATCGAT--AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAAA-ATG------TATAACAGTTA----CTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGTTACTGTATTCTT--TTTTTAAA---TG------TATA------A----ATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT
blockSeqs : T G TA TATAAC C T TAT GGT AACAT T T C TCCTTATT TACTGT T AC T ATTTTA ACAGTT TTGA TTAT G A T TGATTATCTAATTGCGGAT GT A C T G T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ATTGCCAAT C T A G TTTGA G C G . TT A GAA TATTTCA TCTGATATCTCTACGTTTCTT T GTTTTCTCTA ACTT A C TCTGCAAT A C GC A GC CTTTC AT AT ACT A . TCAG G CCTTTCTTTTTTTCGTCCTCTCTTTCTTCCTACAAAAATTCAACATTA TTTCT TACAAAAAAAAGCCACAT TC AGATACAATG T T G A C AA T T A C TT CGA AACAAA TTT CG AT
blockSeqs : . A TT TACGAC . A AT . . G T C . . T . T . . . . C . C . . C A T . . ATTGTCAAT T . T A . A T T . TA . GAT . ATTGTCTCTAA . . . A C . . . CA A TT TT . CA ACT . . . . CCTTTTTTCCTTCTCTCTATCACCCTACAAAACTTCCACATTA C TTTATGTTTT A AGATACAATG T T A . C AA T A A . AT CGA AAA TGT T .
blockSeqs : G A TAC . C C . . T T C . . T . T . . . . A . A . . A C T . . . G . A G . A G T . TT . GAT . ATT . . . A C . . . CA A TT CT . . A . . . . TACCCCCTCTCTTTCTCTCTTCAACAATAACCTATTCTTT A TTGGTTTA A TCGATAAGA . C A . . . . A A . C AT AAG CGG . .
blockSeqs : . . C . G T . . C A C . . T . T . . . . A . C . . C C T . . . G . A G . A G T . TT . T . ATT . . . A T . . . CC C GT CC . . T . . . . CCTTAATTAAGATTTTTTTATCCACAATA A TTGGTTTA A TCGATAATA . . G . . . T . . . .
blockSeqs : . C T . . C A C . . T . . . . . . T . A . . C C T . . . T . A A . G C G . T . T . ATT . . . . T . . . CC A C T . . T . . . . CCTTAATTAAGATTTTTTTATCCACAATA T TTTTTT C TCGATCAA . . C .
blockSeqs : . T A C . . . . . . . . . T . A . . C C . . . . . A T G . T . T . ATT . . . . . . . . . . . T . . . . . . . CCTTTCTTATTTCC T ATAT C AGA . . . .
blockSeqs : T A . . . . . . . . . . A . C . . . . . A . T .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : TAC****** TTGGTTTN******************* TNGATACAANA T** AAG****
originalCons : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTC--T-----AC--------GGTT--TATT-ATTTATATAGAT-CAATGTATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
finalCons : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATAC------AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAAAATGTNT-ATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTCTTGGTTTN-------------------T-ATTTATATNGATACAANATATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTTT--GTTCTGAATTAAAATAAAACGA-GATCAAATTGAAG----AAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 111 11111 11111111 111111 1 111111 111111 4444444444444444444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 555555555 11111 3333 1111111 44444444444444444444444444444 2222222222 1111 22222222 11111 11 222 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 5555555555555 111 11 1 1 1 11 1 111 2222222 11 11
lowQualScore : 7 3 0 66 0 999999999 6 1 9999 111 44444 1 1 1 0 88888888 444444 3 66 0 4 000000 000000 7777 9999 1 5 0 1 4444444444444444444 66 3 1 0 9 0 5 6 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 1 6 1 0 1 0 44444 0 1 1 5 0 1 66 5 5555 8888888 33333333333333333333333333333 5 0 5555555555 2222 5 1 00000000 5 0 5 11 1 0 88 22222 77 55 111 5 5 2222 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 999999 2222222222222 1 1 99 000 00 3 9 4 1 5 5 88 3 1 0 8 333 0 8888 0000000 0 222 0 0 99 33 0
lowQualScore : . . . .. . ......... . . .... ... ..... . . . . ........ ...... . .. . . ...... ...... .... .... . . . . ................... .. . . . . . . . . .................................................................................................................................... ......... . . . . . . ..... . . . . . . .. . .... ....... ............................. . . .......... .... . . ........ . . . .. . . .. ..... .. .. ... . . .... . ............................................................................................ ...... ............. . . .. ... .. . . . . . . .. . . . . ... . .... ....... . ... . . .. .. .
lowQualScore : 3 2 8 66 6 888888888 7 0 3333 777 33333 1 0 1 1 11111111 444444 2 99 1 5 555555 555555 7777 4444 0 0 4 4 3333333333333333333 11 9 1 8 4 2 0 7 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 5 7 7 1 7 4 33333 7 4 0 0 8 0 99 0 6666 6666666 11111111111111111111111111111 7 1 0000000000 1111 0 7 77777777 7 4 7 44 4 1 33 00000 99 77 111 7 7 1111 7 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111 4444444444444 0 3 77 333 33 0 0 1 7 7 0 55 2 0 6 0 000 8 8888 0000000 6 000 8 8 00 88 8
consensus : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAA-AATGTNTATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTCT--------T--AGTTTNTATTTATATCGATACAANATATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-C-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
Reference ( family-1891 ) : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAACAACTCAATTGAATACTNAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGANTTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAAGATTACTGTGTTT-TGCTGTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTAAAACCGTTATAGTAAAGGACAAT---------TGTTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAAACGCATCAACTTACGT-----CAAAACTGGCGTGAATNTCATTTACAA-AATGTNTATTCTGCCACTAAAATGAACAAAATCCCAA-TCCG-A-TACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCCCTCAACCTC--------TCTCCTATT-CCCTCCCTCACTATATG-TATCACTCTTTATCTGCTCCAAGCCCTAATTCCATTTGCCTTCCTTTCTCCCTTACT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-CTTTT-TAACTCAGTTTTTC----T-TT-------CCTT--TT----T--------------CTTTT-------------------T-TCC-ACAA-----------TA-----------TTTT----NCCTTTCTTTCT--------T--GGTTTNTATTTATATNGATACAANATATAATCCCTATAAATATGGCTC-TGTTGTTTATGTCATAATATGTCAGCTGATAAAATTGTTGACAGAATTAAGTNACAATCATAAAATG-TTT-T-GTTCTGAATTAAAATAAAACGA-GATCAAATTG---AA-GAAAAAAGAGTCGTATTCAAAAGAAATATATGAAC--TTTTTTTACA--AACTCCTTTTGACTACACACAATAGGAA
gi|1 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATT---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTTAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAAATA-------------------TCCAACACTTGCTTCTGACTTATCA--AAAACACTATTATTTCAATCAATTTTATTAAGA-TACTGGGTTT-TGCTGTTTTTCA-TACTGTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTGAAGGACAAT---------TGTTA-GCGAATTTTTAATAAGTATAGTAATTAGGACGTATACGGAGGGAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAATTTTTTTTATACTACCACTAAAATGAACAAAATCCCAA-TCTGAA-TATTCAACCTGATT-------TCATTC------------T------TT--------TTTCTTTA-ATCTC----------ACTC----TCCATCTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTT-ATTTCATAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTCTACAAAA--C--AATCCACAT---TATT--TATAAGATATAATCCCT-TAAATATGGCTC-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTGACAGAATTAAGTTACAATCAT-AAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATTA---AACGAAAACAGAGTCGTATTCAAAAGAAATATATCAAC--TTTTTTTACA--AACTCCTTTTGACTACATACAATAGGAA
gi|10 : TTA-----CTCTTTAGAATAATTCATTTCAATACTTAGTCGTTAAAGCAC--------AACATTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTGTACATG
gi|10 : AACACCAACTTCTGACTTATTAGTAAAAAA--ATTATTTCAATAAATTTTAATATAATTA-----------CTGTTTTCCATTAC-GTACATAACtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacaccaacttctgacttattagtaaaaaaattatttcaataaattttaatataattactgttttccattacgtacataac
gi|11 : ttactctttagaataattcatttcaatacttagtcgttaaagcacaacattgtgtattctttttaaaatatgtataactgtacatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGATA-TATATAG------ATTAGCATGA-----C---AAGTTACCAAATGACA-TTTAGTCA-TATCA---ATTA-----CTTGTTAAAAGAATTCAATTGAATACTTAAT-GCTAT-GTATTCCTTATTAAAGATGTAT------TTTATTACTTTGTAAATTATGATTTTATATA------ATTGACTGTACATAATTATGTAATATATACCAATTCTTATTATTCCTTCCAGTTTATATGCTATAAAACTTT----AGTTTG-A---AAATAA
gi|12 : AAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCTGTTCTATTTATTCGTTACAGTTTATACGCTATAAAACTTTCTTGACTTTG-GTACAAACAATTATAATAATTGATA----------------------A----CTGCTTCTGACTTATTA--AAAACACTATTATTTCAATCAATTTTATTAATA-TACTGTGATT-TGCTGTTTTTCA-TACTGTACATAACACAAGGACCTATAGGTGACAac
gi|13 : TCAAAAAATG-TTT-TTGTTCTGAATTAAAATAAAA--ATGATCAAATTG---AA-AAAAAAAGGGTTTTATTCAAAAGAAATATCTGAACT-TTTTTTTACT--AACTCCTTTTGACTACACACAATAGGAAtatagttccttgata
gi|14 : agacAGACGTTAAAGCTC--------AAAATTGTGT------ATTATT--TTT--AAAATATG------TATA------A----CTGTACATGT----GTTAAATTTACCAATTCTATTTATTCCTTCCAATTTACACGCTATAACACTTCCTTTAATTTGAAAACAAAAAATTGTATTAACAAATATGATTATCTAATTGCGGATTCTAACACCAACCTCTGACT--------------TATTATTTCAATAAATTTTAtatataatttacattgaataatgaagaaataaaattttaaagaatgaccttgatttaaaaaaggacgaaaaataagaaaaatatcacaaaaaaact
gi|15 : AAATTAAAACAGTTATAGTAAAGGACAATATTGCCAATTGCTT-GGGAATTTGTGATACATATTGTAACTAAGACGTATACTGGGGGAATGGAAACGCATCAACTTACGT-----CAAAACTCGCGTAAATCTCATTTACAA-AATGTGTATTCTGCCACTAAAATGAACAAAACCCCAA-TCCat
gi|16 : TTGACTACATACAATAGGAAttac
gi|17 : TCTTTAAAATAATCCATTTCAATACTTAGT-GTTAAAGCAC--------AAAACTGTGT------AT--TC--TTTTTAAAATATG------TATA------A----CTATACATGT----GTTATATTTGTCTGGTTAATTTAtatacatgtttacatagaataatgaagaaataaaatttttaagaattataaaaaaaggacgaaaataagaaaaaatctaagctgtgaaatgttttcattttctaagattaaaaaaaagaaaatttaccgtgcataaataa
gi|18 : AACACCTGCTTCTGATTTATTA--AAAAAAAAATTATTTCAATCAATTTTATTATGGTTACT-CATTTGTGCTGTT
gi|19 : taaATGAAA-TTAATTCA-C--CA---AATA-----CTCTTTAAAACAACTCAATTGATTACTAAGTC-TTA
gi|2 : AAATAACAATTATTTAGATAGTATACAGTAGTAAATCAGTTTGATA---C---AAGTTACCAAATGAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAATCAACTAAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGT------ATTATT--TTTTTAAAA-ATG------TATA------A----CTGTACATGA----GAAATATTTACCAGTTCTATTTAGTCGTTACAGTTTATACGCTACAAAACTTCCTTGAATTTG-ATACAAACAATTATACTAATAACTA-------------------TCCTACACTTGCTTATGACTTACCA--AAAACACTATCATTTCAATCAATTTTATTAAGA-TACTGTGTTT-TGCTGTTTTTCA-TACTTTACATAACACAAGGATCTCTATGTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAAACCGTTATAGTAAATAACAAT---------TGTTT-GCAAATTTTTAATACGTATAGTAACTTGGACGTATACGGAGGAAAAGGAAACGCATCACCTTACGT-----CAAAACTGGCATGATTTTTATTTACAA-TTTGTTTATACTGCCACTAAAATGAACAAAAATCCAA-TCTGAA-TATTCAACCTGATT-------TCATTC------------A------TT--------TTTATTTA-ATCTC----------ACTC----TCCATTTCCACTTTATTTCGTTCAACCTC--------TCTCCTATT-CCCTCCTTCACTATATG-TATCATTCTTTATCTGCTTCAAGCGCTAATTCCATTTGCCTTCCTTTCTCCCTTATT---A--ACTTTCTTT--TTTTTCA--TCCCTTTAACTATTTTATTTTATTTTT-TAACTCAGTTTTTC----T-TT-------CC----TT----T--------------CTTAT-------------------T-TCC-----------------------------TTTT----CCCTTTCTCTCTACAAAAAAA--AG-CCACAT---TATT--TATAAGATATAATCCTTA-AAA-ATGGCTT-TGTTGTTTATGT-AT--TATGTCAGCTGATAAAATTGTTAACAGAATTAAGTTACAATCAT-CAATT-TTT-C-GTTCTTAATTAAAATAAAACGA-GATCAAATAAAACAA-AAAAAAAGAGTTGTATTCAAAAGAAATATATTAAC--TTTTTTTAC
gi|3 : AA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|3 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAA-AATGTTTA-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTTT--------T--GGTTTATATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-Ttataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctct
gi|4 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GTG------TGTA------A----CTGTACACGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAAACTTCCTTGATTTTA-ATACAAAAAATTAAACTGATAAATA-------------------TCCAACACCTGCTACTGACTTATTA--AAAACACTATTATTACATTCAATTTTATTAAGATTACTGTGTTT-TGCTTTTTTCCA-TACTGTACATAACACAAGGACCTATATGTGATA
gi|4 : TAAATTAAAACCGTTATAGTAAAGGACAAT---------TGGTT-GCGAATTTGTAATACGTATAGTAACTAGGACGCATACGGAGGGAAAGGAGACGCATCAACTTACAT-----CAAAACTGGCATGAATGTCATTTACAA-AATGTTTA-TCTGGCACTTAAATGAGCAAATTCCCAA-TCTG-ATTACACAACCTGATT-------TCTTTC------------A------TT--------TTTCTCTA-ATCTC----------ACTC----TCCATTTCCATTTT-TTCCCCTCAACCTC--------TCTCCTATT-CCCTTCCTCACTATATG-TATCACTATTTATCTGCTCCAAGCCATAATTCCATTTTTCTTCCTTTCTCCCTTA-T---A--ACTTTCTTT--TTTTTTACTTCTCTTTAACTATTTTATTTT-CTTTT-TAACTCAGCTTTTC----T-TT-------CCTTAATTAAGAT--------------TTTTT-------------------TATCC-ACAA-----------TA-----------TTTT----ATCTTTCTTTTT--------T--GGTTTATATTGATA-AGATACAATGTATAATCCCTATAAA-ATAGCTC-tataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaaaccgttatagtaaaggacaattggttgcgaatttgtaatacgtatagtaactaggacgcatacggagggaaaggagacgcatcaacttacatcaaaactggcatgaatgtcatttacaaaatgtttatctggcacttaaatgagcaaattcccaatctgattacacaacctgatttctttcatttttctctaatctcactctccatttccattttttcccctcaacctctctcctattcccttcctcactatatgtatcactatttatctgctccaagccataattccatttttcttcctttctcccttataactttctttttttttacttctctttaactattttattttctttttaactcagcttttctttccttaattaagatttttttatccacaatattttatctttcttttttggtttatattgataagatacaatgtataatccctataaaatagctc
gi|5 : aagtgtgtaactgtacacgagaaatatttaccagttctatttattcgttccagtttatacgctataaaacttccttgattttaatacaaaaaattaaactgataaatatccaacacctgctactgacttattaaaaacactattattacattcaattttattaagattactgtgttttgcttttttccatactgtacataacacaaggacctatatgtgatatataattccttgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAAACCGTTATAGTAAATGACAATATTGTCAATTGTTTTGGGAATTTGTGAAACGTAGAGTA--T--GACGTATACGGAGG-AAAGGAAATCCATCAACTTACTT-----CATAACTCGTGTAAATCTCATTTACAA-AATTTGTATTCTGCCACTATAACGAACAAAATCCCAAATCCT---TACACAACCTGATA-------TCTTTC------------A------TT--------TTTCTCTA-ACCTC----------ACTC----TCCATTTCCATTTTATTTCCTTCAATCTC--------TCTCCTATT-CCCTCCTTTACTATATG-TATCACTCTTTATCCGCTCCAAGTCCTACTTCCATCTGTCTTCCTTTCTCCCTTGCT---A--ACTTTCTTTATTTCTTCT--TCCCTTTAGCTATTTTATTTT-CTTTT-TAACTCAGTTTTCC----T-TT-------CCTT--TC----TTTTTTTCGTCCTCTCTTTC-------------------T-TCCTACAAAAATTCAACATTA-----------TTTT--------TTCTTTCT--------T--A-TATTTCTTTATATCGATA--AGACATAAGCC-TA-AAATATGGCT---GTTGTTTATGTCATAATAGATCAGATGATAAAAGTGTTGACAGAATTAAGTAATAATCATAAAATG-TTTAT-GATATGAATTAAAATAAAACGA-CATCAAATTG---AA-GAAAAAAAAATCGGATTCAAAAGAAGTATATGAAC--TTTTTTTTTAATAACTCCTTTTGACTACACACAATAGGAA
gi|6 : TATTGGAACAAGGATGCATACAG-TGAAAAAGAAACGCATTCATTTACATTTTGACAATACTCGCAAAAATTTCATTTACAA-ATTTTGTATTCTGCCACTAAGATGAACAAAATCTCAA-TCCT---TACATAACCTGATTTATTTCATTTTTCTCTGATATCTCTACGTTTCTT--------TCTCTCTA-A-CTC----------ACTC----TCCATTTCCACTTTATTTCCCTCGA--TC--------TCTTCTATTACCCTCCCTCACTATATG-TATCACTCTTTATCTGTTCC-AGCCCTAATTCCAT--------CTTTCTCCCTTACC---A--ATTTTCTTCCATTTTACT--CCCCTTTAACTATTTTCTTTT-CTTCA-TAGCTCTGTTTTCCTCAGT-TT-------CCTT--TT----TTC------------CTTCTCTCTATCACCCTACAAAACT-TCC-ACAT-----------TA-----------TTTTTTTCTTCTTTCTTTCT--------T----TTTTTCTTTATATCGAT-CA--ATATAATCCCTA-AAAT---GCTC-TGTTGTTAATGTCATAAGATATCAAC---TAAAATTGTTGACAGAATTTAGTAACAATCATAAAATGCTTT-T-GTTCTGAATTAA------------ATCAAATTG-----------------------TAAAAG---T-TGTGAACCGTTTATTAACA--AACTCCTTTTGAC-A-ACACAATAtataaaatttacatagactaatgaagatcacataaaaagtttaa
gi|7 : A-AATGTATAT---GCCACTAAAATAAACAAAATCCTAA-TCCT---TACACAATCTAATT-------TCTTTC------------A------TTGTCTCTAATTTCTCTGTATTTCGTTTTCTCTAACTCACTTTCCATTT-CACTTAATCTCTCTCCATCTCTCTGCAATTCTCCTATT-CACCTAATCACTATAGGCTATCATACTTGATCTGCTCCAA----TA--CCCGTTT-CCATCCCTACCCCGTCACTTTCAATACTTTCTTT--TTTCTC------------CCATTTTATTTT-CTTAT-TAACATA-TTTTTC----TGTTTACCCCCTCTC--TT----T--------------CTCTC-------------------T-TCA-ACAA-----------TAACCTATTCTTTTTTT----TCCCTTCTTTCT--------TTATGTTTTTCTTTATATCGAT--AATATATAATCCCTA-ATACATCGCTCATATTGaaacacgttacacagaataatgaag
gi|8 : tacattttttaaaaaatgtccataaacaattgtattacttaatagAAACCACAA--ATTTA--TAAAA-ACA--AGTAAATCAGTTGGATATAAC---AAGTGATCAAATGAAACTTGGCTCAAT--CAGGTATTAAACATTTCTTTAAAATAACTCGATTGAATGTTAAGTCATT-----------------AGCTGTGT------ATTA-------TTAAAA-ATG------TATAACAGTTA----CTGTACAT
gi|9 : ttgaattgtcagattataaaaaaaatgtctgtgtgcaggttttgacagtcttttaaataatgggaaactagactactcaaattaaaaagtcatcgaaacattaaatgatcggaagttcatactattacaaaatacaaaattatatatacatgttttatttttttaaaaaATTTAGAGAGTATACAGTTGTAAATTAGTTGGATA---CGACAAGTTAATGAATAAAA-TTCATTCA-T--CA---ATTA-----CTCTTTAAAATAACTCAATTGAATACTAAGTCGTTAAAGCAC--------AAAACTGTGTTACTGTATTCTT--TTTTTAAA---TG------TATA------A----ATGTACATGA----GAAATATTTACCAGTTCTATTTATTCGTTCCAGTTTATACGCTATAAGACATCCTTGAATTTT-ATAAAAACAATTATACTAATAAATA-------------------TCCAACACCTGCTTCTGACTTATTA--AAAA-ACTATTCTTTCAATCAATGTTATTATGATTACTGTTGTT-GGTTGTT