lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 222222 111111111111111111111 111111 111111111 11111 11 666666666666666666666666666666666666666666666 222
lowQualScore : 5 444444 2 444 999999999999999999999 22 22 999999 1 1 22 44 1 4 222 1 5 22 444444444 1 22 77777 5555 88888 00 4 8 1 333333333333333333333333333333333333333333333 111
lowQualScore : . ...... . ... ..................... .. .. ...... . . .. .. . . ... . . .. ......... . .. ..... .... ..... .. . . . ............................................. ...
lowQualScore : 7 888888 9 444 666666666666666666666 44 44 000000 7 7 33 66 6 6 888 6 6 22 666666666 7 66 33333 0000 22222 66 4 2 2 000000000000000000000000000000000000000000000 555
consensus : NNNNNCAAT-TAAGGATTAAAAGC--G-A-A-TTTT---GAGTTTTCA------------TCG------GGTGATGAAAA--A--CATTA--GGCTA-GTTTAAT-G--T--CCGTGAAGCC-CGAA---G-GGCT--TC---TC-GGCAACATT-AAACTAG-CCTAAT----GTT----TTTCATCAC----CCGA--T-GAAAACTNAAAAATTCGNTTCTTTTAATCCTTGTATTTAGAAAAATCNTNATATNTCCCCAGCTTTTNTATATT
Reference ( gi|1 ) : TTTCACAAT-TAAGGATTAAAAGC--A-A-A-TTTT---GAGTTTTCA------------TCA------GGTGATGAAAA--A--CATTA--AACCA-GTTTAAT-G--T--CCGTGAAGCC-CGAA---G-GACT--TC---TC-AGCAACATT-AAACTAG-CCTAAA----GTT----TTTCATCAC----TCGA--T-GAAAACTAAAAAATTCGC--C---TGACCCCTGTA---A-------TATAATA-ACTTC---CTTTTGT-TATTGC
gi|9 : CAAT-TAAGAATTAAAAGC--ACA-A-TTTT---G---------------------TA------GGT--TTGAAA--A--CATTA--AGTTA-GTTTCAT-G--T--TAATGAAACC-AAAA---A-GACT--TC----A-GGCAGTATT-AAAC
gi|6 : attaacacatgcttgttttAATATAAGGATTAAAAGCC-G-A-A-TTTT---GAGTTTTCA------------TCG------AGTGATGAAAA--A--CATTA--GGCCA-GTTTAAT-G--T--TCGTGAAGTC-
gi|15 : cAAT-TAAGG-TT----GC--A-ACA-TTTT---CAGTTTTTAA-----------TCG------GTTGATCAAAA--T--TATTA--TGCGA-GTTTAAT-G--T--TTGTGAAGTC-CGAT---G-AGCT--TA---TC-GGtacattatattctccagctttttttagataaaacaattacg
gi|2 : T-TACGGATTAAAAGC--C-G-ACTTTT---TAGTTTTCA------------TCG------GGTGATGAAAA--A--CATTA--GGCTA-GTTTAAT-G--T--
gi|12 : acaaggacttacatagagatagacaagccgttgagtgcaataaatatataaaagggaatatatcagaatttttcT-TAAGGATTAAAACC--ACA-A-TTTT---GAGTTTATA------------TTG------GCTGATGG-----------TG--A--TA-GTTTATTGG--T--CC-CGAAGCC-CAAA---A-GGCC--TC---TC-GG---CATT-AATCTAtgc
gi|7 : atT-CAGGGATTCAGAGC--GTA-G-TTCT---GGGATTTCA------------TTG------CCTGATGAAAA--A--TATTG--TGT-A-TCTTATT-G--T--CCATGGAGCC-ATAA---G-GATTAAT----TC-A-TAACATT-AAACTAA-ATTAAA----
gi|10 : -TAAGGATTAACAGC--G-CTA-TTTC---GA-----------------------------GTGATGGAAA--A--CATT---CGTCATGTTAAAT-G--A--TTGTGAAGAC-TGAA---G-GACT--TC---TT-GGCAATATGAAAACTAG-tgtgctt
gi|11 : AGGATTAAAAGCGCA-A-T-TTTT---CA--TTTCA------------AAA------TTTGATGAAAA--AAACATTT--GGTTG-GTTTAAT-A--C--CTGTGAAGCA-CAAA-----------------C-GGCAACTTT-AAACCAaca
gi|3 : tGGATTGAAAGC--A-G-A-TTTTTTTATTTTTTTA------------TCT------GATGATGAAAA--A--CATAA--GACTG-GTTCTAT-G--T--CACTGAAGCC-CAGA---GTGGCT--GC---TC-TGTAACATT-GCACTAG-ACATAC----GAC----ATTCATCAC----AGCA--T-GAAAACTCAAAA
gi|18 : ttGATTAAAAAC--A-CTA-TTTT---TAGTTTTCA------------TCG------GGTGATGAAAA--A--TAATA--AGCAA-GTTTAAT-G--T--TCGTGA
gi|5 : AAAAGC--A-T-A-ATTT---GAGTATTAA------------GTT------GGTGATGAAAT--G--CATAA--TTCTA-GTTAAAT-G--T--T-ACAGAGAC-GGCA---G-G-CA--TC---AC-AG--ACATT-AAACTAT-TGTAAT----GTT----TTTCATCAC----T
gi|4 : -A-A-TGTT---GAGCTTTCG------------TCA------GGTGATGATAC--A--CTTTA--GGCTG-GGTTAAT-G--T--CCGTAAAATC-CAAA---T-GGCT--TG---TC-GGTAACATG-AAACTGG-ACAATT----GTT----TATCATCATCCGATCGA--T-GAAAAGTTGAAAACTCtaactaataataa
gi|4 : atttt-A-TTTT---GAGTTTTCAACTTTTCATCGATCG------GATGATGATAA--A--CAATT--GTCCA-GTTTCAT-G--TTACCGACAAGCC----ATTTG-GATT--TT---AC-GG--ACATT-AACCCAG-CCTAAA----GTG----TATCATCAC----CTGA--C-GAAAGCTCAA
gi|3 : -TTTT---GAGTTTTCA------------TGC------TGTGATGAATG--T--CGTAT--GTCTA-GTGCAAT-G--TTACAGAGCAGCCACTCT---G-GGCT--TC------AGTGACATA-GAACCAG-TCTTAT----GTT----TTTCATCAT----CAGA--TAAAAAAATAAAAAAATCcatt
gi|14 : ttggattgaaagcaTTT---GAGTTT-CA------------TCAAGTGATGGTGATGGAAA--A--CATTAGGGGCTA-A-TTAA-----------TAAAGCC-CAAA---G-G-CT--TC---TA-AGTAATTAT-AAACTAGTCCTA
gi|19 : T---GAGTTTTCACA----------TCA------AGTAATGAAAA--A--TATAA--GGCAA-GTT------------CATGAAGCC-CGAA---A-GGCT--TC---TC-GG
gi|13 : AGTATTAA------------TTA------AG-GATTAAAAGTA--CAATA--A-----GTTTAAT-G--T--TAGTGAAGCC-CAAA---G----T--TCAACTT-GGCAACATT-AAACTAT-ACTTAT----GTT----T
gi|17 : CA------------CCA------TGTGATGAAAA--A--CATTG--GGCTG-GTTTAAT-G--T--TCTTGAAGCC-CAAA---at
gi|5 : gaaatttcattagattaaagataaaaaa------------TTA------AGTGATGAAAA--A--CATTA--CAATA-GTTTAAT-G--T--CTGTGATGCC-T--------GCCG--TC---TC-TGTAACATT-TAACTAG-AATTAT----GCA----TTTCATCAC----
gi|24 : aaaagcataatttgagtattaagttgTGATGAAAA--A--CATTA--CACTA-GTTTAAT-G--T--CCGTGAActaataataa
gi|21 : GATGAAAA--A--CATTA--GGCCA-GTTTTAT-G--T--TCGTGAAGCC-TGAA---G-GGCT--Tag
gi|20 : AAAA--A--CATAA--AGCTA-GTTGAAT-GTAT--CCGAGAAGCC-CTTT---G-GGCT--TC---
gi|16 : cgtA--A--CATGA--A------TTCAAT-G--G--TCGTGAAGTC-CAAA---G-GACT--TC---TTAAAAAACATT-GAACTAG-ATTAAATTAGGTTTCTGTTTCATtttc
gi|23 : A--GACCC-GTTTAAT-G--T--TCGTGAAGAC-CGAA---G-GGCT--TC---TC-GGC
gi|20 : CGTGAAGCC-CAAA---G-GGCT--TC---TC-GGATACATT-CAACTAG-CTTTAT----GTT----TTT
gi|22 : GTGAAGCC-TGAA---G-GGAT--TC---TC-AGCAACATT-AAACTAA-TCTtttc
gi|21 : AAGCC-CTTC---A-GGCT--TC---AC-G--AACATA-AAACTGG-CCTAAT----GTT----TTTCATCtac
gi|15 : AAGCT-CATC---G-GACT--TC---AC-A--AACATT-AAACTCG-CATAAT----AAT----TTTGATCAA----CCGAT-T-AAAAACTGAAAA
gi|17 : aattaaggttgcaaca---G-GGCT--TC------AAGAACATT-AAACCAG-CCCAAT----GTT----TTTCATCAC----atcgg
gi|6 : gaaatttcattagattaaagataaaaaacaccat-GACT--TC---AC-G--AACATT-AAACTGG-CCTAAT----GTT----TTTCATCAC----TCGA--T-GAAAACT-CAAAATTCGG--CTTTTAATCCTTATATTTA-------CATTATA-TTCTCCAGCTTTTTT-TAaaa
gi|2 : cGCAACATT-AAACTAG-CCTAAT----GTT----TTTCATCAC----CCGA--T-GAAAACTAAAAAGTCGGCTTT---TAATCC--GTA---AGAAAAATTCTGATATATTCC---CTTTTATATATTgataaaacaattacg
gi|18 : acaaggacttacatagagatagacaagccgttgagtgcaataAACATT-AAACTTG-CTTATT----ATT----TTTCATCAC----CCGA--T-GAAAACTAAAAA
gi|24 : gattaaaaacactaACATT-AAACTAG-TGTAAT----GTT----TTTCATCAcgtga
gi|19 : ttcacggT-GAACTTG-CCTTAT----ATT----TTTCATTAC----TTGATGT-GAAAACTag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ACTAAGGGACGGACCATTTTTTTCTTCATTGTTTGAGTGCCAAAATATTTTTTTGACTGGAAAGGTTAATTAGATATTTTTTTAAAGATAAACCCAGGCTAGATTTTTTTTTCA
Alignments
lowQualScore : 2222 11111 111111111111 1111 555 1 44444444444 2 222
lowQualScore : 0 6666 00000 44 333333333333 33 555 0 2 0 4 2 333 2 2 2 66 33 4444 99 0 666 2 55555555555 1 1 0 000 1
lowQualScore : . .... ..... .. ............ .. ... . . . . . ... . . . .. .. .... .. . ... . ........... . . . ... .
lowQualScore : 8 0000 99999 66 111111111111 22 444 5 1 2 2 1 999 2 1 5 99 88 2222 22 8 000 3 55555555555 0 0 5 555 0
consensus : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAG-NCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGG--CTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
Reference ( family-1866 ) : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAG-CCT-AATGTTTTTCATCACC----CGATGAAAACTNAAAAATTCGNTTCTTTTAATCCTTGTATTTAGAAAAATCNTNATATNTCCCCAGCTTTTNTATATT
gi|1 : CAATTAAGGATTAAAAGCA-A-ATTTT---G-AGT--TTTCA---TCA------GGTGATGAAAA--ACATTA--AACCAGTTTAAT-GTCCGTGAAGCCCGAAG-GACTTC---TC-AGCAACATT-AAACTAG-CCT-AAAGTTTTTCATCACT----CGATGAAAACTAAAAAATTCGC-----CTGACCCCTGTA
gi|10 : tttcaTAAGGATTAACAGCG-CTATT--------------------TCG------AGTGATGGAAA--ACATTC--GTCATGTTAAAT-GATTGTGAAGACTGAAG-GACTTC---TT-GGCAATATGAAAACTAG-atataataacttccttttgttattgc
gi|11 : AGGATTAAAAGCGCA-ATTTT-------TCATTTCAAAATTT------GATGA-AAAAA--ACATTT--GGTTGGTTTAAT-ACCTGTGAAGCACAAA------------C-GGCAACTTT-AAACCAaca
gi|12 : tTTAAGGATTAAAACCACA-ATTTT---G-AGT--TTATA---TTG------GCTGATGGTGA-------------TAGTTTATTGGTCC-CGAAGCCCAAAA-GGCCTC---TC-GG---CATT-AATCTA
gi|13 : atGATTAAAAGTACAATA------AGTTTAAT-GTTAGTGAAGCCCAAAG----TTCAACTT-GGCAACATT-AAACTAT-ACT-TATGTTT
gi|14 : agtattaattaagTTT---G-AGT--TT-CA---TCAAGTGATGGTGATGGAAA--ACATTAGGGGCTAA-TTAA-------TAAAGCCC-AAA-GGCTTC---TA-AGTAATTAT-AAACTAGTCCT-Aat
gi|15 : AATTAAGG-TT----GCA-ACATTTT---C-AGT--TTTTAA--TCG------GTTGATCAAAA--TTATTA--TGCGAGTTTAAT-GTTTGTGAAGTCCGATG-AGCTTA---TC-GG
gi|16 : AATTCAAT-GGTCGTGAAGTCCAAAG-GACTTC---TTAAAAAACATT-GAACTAG-ATT-AA
gi|17 : aacatgCA---CCA------TGTGATGAAAA--ACATTG--GGCTGGTTTAAT-GTTCTTGAAGCCCAAAattaggtttctgtttcat
gi|18 : gaaatttcattagattaaagataaaaaaGATTAAAAACA-CTATTTT---T-AGT--TTTCA---TCG------GGTGATGAAAA--ATAATA--AGCAAGTTTAAT-GTTCGTGA
gi|19 : T---G-AGT--TTTCACA-TCA------AGTAATGAAAA--ATATAA--GGCAAGTT--------CATGAAGCCCGAAA-GGCTTC---TC-GG
gi|2 : GCAACATT-AAACTAG-CCT-AATGTTTTTCATCACC----CGATGAAAACT-AAAAAGTCGG--CTTTTAATCC--GTA---AGAAAAATTCTGATATATTCC---CTTTTATATATT
gi|20 : acaaggacttacatagagatagacaagccgttgagtgcaataCGTGAAGCCCAAAG-GGCTTC---TC-GGATACATT-CAACTAG-CTT-TATGTTTTT
gi|21 : GATGAAAA--ACATTA--GGCCAGTTTTAT-GTTCGTGAAGCCTGAAG-GGCTTtttc
gi|22 : GTGAAGCCTGAAG-GGATTC---TC-AGCAACATT-AAACTAA-TCT-
gi|23 : A--GACCCGTTTAAT-GTTCGTGAAGACCGAAG-GGCTTC---TC-GGCtac
gi|24 : TGATGAAAA--ACATTA--CACTAGTTTAAT-GTCCGTGAA
gi|3 : GGATTGAAAGCA-G-ATTTTTTTA-TTT--TTTTA---TCT------GATGATGAAAA--ACATAA--GACTGGTTCTAT-GTCACTGAAGCCCAGAGTGGCTGC---TC-TGTAACATT-GCACTAG-ACA-TACGACATTCATCACA----GCATGAAAACTCAAAAag
gi|4 : tt-A-ATGTT---G-AGC--TTTCG---TCA------GGTGATGATAC--ACTTTA--GGCTGGGTTAAT-GTCCGTAAAATCCAAAT-GGCTTG---TC-GGTAACATG-AAACTGG-ACA-ATTGTTTATCATCATCCGATCGATGAAAAGTTGAAAACTC
gi|5 : attttGTGATGAAAA--ACATTA--CAATAGTTTAAT-GTCTGTGATGCCT-----GCCGTC---TC-TGTAACATT-TAACTAG-AAT-TATGCATTTCATCACC----AACTTAATACTCAAA
gi|6 : aaaagcataa-GACTTC---AC-G--AACATT-AAACTGG-CCT-AATGTTTTTCATCACT----CGATGAAAACTC-AAAATTCGG--CTTTTAATCCTTATATTTA-------CATTATAT-TCTCCAGCTTTTTttaactaataataa
gi|7 : cTCAGGGATTCAGAGCGTA-GTTCT---G-GGA--TTTCA---TTG------CCTGATGAAAA--ATATTG--TG-TATCTTATT-GTCCATGGAGCCATAAG-GATTAA---TT-CATAACATT-AAACTAA-ATTAAATGTtagataaaacaattacg
gi|9 : CAATTAAGAATTAAAAGCACA-ATTTT---GTAGG--TTT---------------------GAAA--ACATTA--AGTTAGTTTCAT-GTTAATGAAACCAAAAA-GACTTC----A-GGCAGTATT-AAACgctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTAAGGGACGGACCATTTTTTTCTTCATTGTTTGAGTGCCAAAATATTTTTTTGACTGGAAAGGTTAATTAGATATTTTTTTAAAGATAAACCCAGGCTAGATTTTTTTTTCA
Alignments
lowQualScore : 2222 11111 111111111111 1111 11 1 44444444444 1 222
lowQualScore : 0 6666 00000 44 333333333333 33 555 0 2 0 4 2 333 2 2 2 1 55 4444 55 3 2 55555555555 1 1 5 000 1
lowQualScore : . .... ..... .. ............ .. ... . . . . . ... . . . . .. .... .. . . ........... . . . ... .
lowQualScore : 8 0000 99999 66 111111111111 22 444 5 1 2 2 1 999 2 1 5 0 00 2222 00 2 0 55555555555 0 0 5 555 0
consensus : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
Reference ( family-1866 ) : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
gi|1 : CAATTAAGGATTAAAAGCA-A-ATTTT---G-AGT--TTTCA---TCA------GGTGATGAAAA--ACATTA--AACCAGTTTAAT-GTCCGTGAAGCCCGAAG-GACTTC---TC-AGCAACATT-AAACTAGCCT-AAAGTTTTTCATCACT----CGATGAAAACTAAAAAATTCGCC---TGACCCCTGTA
gi|10 : tttcaTAAGGATTAACAGCG-CTATT--------------------TCG------AGTGATGGAAA--ACATTC--GTCATGTTAAAT-GATTGTGAAGACTGAAG-GACTTC---TT-GGCAATATGAAAACTAGACatataataacttccttttgttattgc
gi|11 : AGGATTAAAAGCGCA-ATTTT-------TCATTTCAAAATTT------GATGA-AAAAA--ACATTT--GGTTGGTTTAAT-ACCTGTGAAGCACAAA------------C-GGCAACTTT-AAACCAa
gi|12 : tTTAAGGATTAAAACCACA-ATTTT---G-AGT--TTATA---TTG------GCTGATGGTGA-------------TAGTTTATTGGTCC-CGAAGCCCAAAA-GGCCTC---TC-GG---CATT-AATCTA
gi|13 : atGATTAAAAGTACAATA------AGTTTAAT-GTTAGTGAAGCCCAAAG----TTCAACTT-GGCAACATT-AAACTATACT-TATGTTT
gi|14 : agtattaattaagTTT---G-AGT--TT-CA---TCAAGTGATGGTGATGGAAA--ACATTAGGGGCTAA-TTAA-------TAAAGCCC-AAA-GGCTTC---TA-AGTAATTAT-AAACTAGTCat
gi|15 : AATTAAGG-TT----GCA-ACATTTT---C-AGT--TTTTAA--TCG------GTTGATCAAAA--TTATTA--TGCGAGTTTAAT-GTTTGTGAAGTCCGATG-AGCTTA---TC-GGcta
gi|16 : AATTCAAT-GGTCGTGAAGTCCAAAG-GACTTC---TTAAAAAACATT-GAACTAGATT-AA
gi|17 : aacatgCA---CCA------TGTGATGAAAA--ACATTG--GGCTGGTTTAAT-GTTCTTGAAGCCCAAAattaggtttctgtttcat
gi|18 : gaaatttcattagattaaagataaaaaaGATTAAAAACA-CTATTTT---T-AGT--TTTCA---TCG------GGTGATGAAAA--ATAATA--AGCAAGTTTAAT-GTTCGTGA
gi|19 : T---G-AGT--TTTCACA-TCA------AGTAATGAAAA--ATATAA--GGCAAGTT--------CATGAAGCCCGAAA-GGCTTC---TC-GG
gi|2 : GCAACATT-AAACTAGCCT-AATGTTTTTCATCACC----CGATGAAAACT-AAAAAGTCGGCTTTTAATCC--GTA---AGAAAAATTCTGATATATTCC---CTTTTATATATT
gi|20 : acaaggacttacatagagatagacaagccgttgagtgcaataCGTGAAGCCCAAAG-GGCTTC---TC-GGATACATT-CAACTAGCTT-TATGTTTTT
gi|21 : GATGAAAA--ACATTA--GGCCAGTTTTAT-GTTCGTGAAGCCTGAAG-GGCTTtttc
gi|22 : GTGAAGCCTGAAG-GGATTC---TC-AGCAACATT-AAACTAATCT-
gi|23 : A--GACCCGTTTAAT-GTTCGTGAAGACCGAAG-GGCTTC---TC-GGCtac
gi|24 : TGATGAAAA--ACATTA--CACTAGTTTAAT-GTCCGTGAA
gi|3 : GGATTGAAAGCA-G-ATTTTTTTA-TTT--TTTTA---TCT------GATGATGAAAA--ACATAA--GACTGGTTCTAT-GTCACTGAAGCCCAGAGTGGCTGC---TC-TGTAACATT-GCACTAGACA-TACGACATTCATCACA----GCATGAAAACTCAAAAag
gi|4 : tt-A-ATGTT---G-AGC--TTTCG---TCA------GGTGATGATAC--ACTTTA--GGCTGGGTTAAT-GTCCGTAAAATCCAAAT-GGCTTG---TC-GGTAACATG-AAACTGGACA-ATTGTTTATCATCATCCGATCGATGAAAAGTTGAAAACTC
gi|5 : attttGTGATGAAAA--ACATTA--CAATAGTTTAAT-GTCTGTGATGCCT-----GCCGTC---TC-TGTAACATT-TAACTAGAAT-TATGCATTTCATCACC----AACTTAATACTC--AAATTATGCTTTT
gi|6 : -GACTTC---AC-G--AACATT-AAACTGGCCT-AATGTTTTTCATCACT----CGATGAAAACTC-AAAATTCGGCTTTTAATCCTTATATTTA-------CATTATAT-TCTCCAGCTTTTTttaactaataataa
gi|7 : cTCAGGGATTCAGAGCGTA-GTTCT---G-GGA--TTTCA---TTG------CCTGATGAAAA--ATATTG--TG-TATCTTATT-GTCCATGGAGCCATAAG-GATTAA---TT-CATAACATT-AAACTAAATTAAATGTtagataaaacaattacg
gi|9 : CAATTAAGAATTAAAAGCACA-ATTTT---GTAGG--TTT---------------------GAAA--ACATTA--AGTTAGTTTCAT-GTTAATGAAACCAAAAA-GACTTC----A-GGCAGTATT-AAACgctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTAAGGGACGGACCATTTTTTTCTTCATTGTTTGAGTGCCAAAATATTTTTTTGACTGGAAAGGTTAATTAGATATTTTTTTAAAGATAAACCCAGGCTAGATTTTTTTTTCA
Alignments
lowQualScore : 2222 11111 111111111111 1111 11 1 44444444444 1 222
lowQualScore : 0 6666 00000 44 333333333333 33 555 0 2 0 4 2 333 2 2 2 1 55 4444 55 3 2 55555555555 1 1 5 000 1
lowQualScore : . .... ..... .. ............ .. ... . . . . . ... . . . . .. .... .. . . ........... . . . ... .
lowQualScore : 8 0000 99999 66 111111111111 22 444 5 1 2 2 1 999 2 1 5 0 00 2222 00 2 0 55555555555 0 0 5 555 0
consensus : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
Reference ( family-1866 ) : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
gi|1 : CAATTAAGGATTAAAAGCA-A-ATTTT---G-AGT--TTTCA---TCA------GGTGATGAAAA--ACATTA--AACCAGTTTAAT-GTCCGTGAAGCCCGAAG-GACTTC---TC-AGCAACATT-AAACTAGCCT-AAAGTTTTTCATCACT----CGATGAAAACTAAAAAATTCGCC---TGACCCCTGTA
gi|10 : tttcaTAAGGATTAACAGCG-CTATT--------------------TCG------AGTGATGGAAA--ACATTC--GTCATGTTAAAT-GATTGTGAAGACTGAAG-GACTTC---TT-GGCAATATGAAAACTAGACatataataacttccttttgttattgc
gi|11 : AGGATTAAAAGCGCA-ATTTT-------TCATTTCAAAATTT------GATGA-AAAAA--ACATTT--GGTTGGTTTAAT-ACCTGTGAAGCACAAA------------C-GGCAACTTT-AAACCAa
gi|12 : tTTAAGGATTAAAACCACA-ATTTT---G-AGT--TTATA---TTG------GCTGATGGTGA-------------TAGTTTATTGGTCC-CGAAGCCCAAAA-GGCCTC---TC-GG---CATT-AATCTA
gi|13 : atGATTAAAAGTACAATA------AGTTTAAT-GTTAGTGAAGCCCAAAG----TTCAACTT-GGCAACATT-AAACTATACT-TATGTTT
gi|14 : agtattaattaagTTT---G-AGT--TT-CA---TCAAGTGATGGTGATGGAAA--ACATTAGGGGCTAA-TTAA-------TAAAGCCC-AAA-GGCTTC---TA-AGTAATTAT-AAACTAGTCat
gi|15 : AATTAAGG-TT----GCA-ACATTTT---C-AGT--TTTTAA--TCG------GTTGATCAAAA--TTATTA--TGCGAGTTTAAT-GTTTGTGAAGTCCGATG-AGCTTA---TC-GGcta
gi|16 : AATTCAAT-GGTCGTGAAGTCCAAAG-GACTTC---TTAAAAAACATT-GAACTAGATT-AA
gi|17 : aacatgCA---CCA------TGTGATGAAAA--ACATTG--GGCTGGTTTAAT-GTTCTTGAAGCCCAAAattaggtttctgtttcat
gi|18 : gaaatttcattagattaaagataaaaaaGATTAAAAACA-CTATTTT---T-AGT--TTTCA---TCG------GGTGATGAAAA--ATAATA--AGCAAGTTTAAT-GTTCGTGA
gi|19 : T---G-AGT--TTTCACA-TCA------AGTAATGAAAA--ATATAA--GGCAAGTT--------CATGAAGCCCGAAA-GGCTTC---TC-GG
gi|2 : GCAACATT-AAACTAGCCT-AATGTTTTTCATCACC----CGATGAAAACT-AAAAAGTCGGCTTTTAATCC--GTA---AGAAAAATTCTGATATATTCC---CTTTTATATATT
gi|20 : acaaggacttacatagagatagacaagccgttgagtgcaataCGTGAAGCCCAAAG-GGCTTC---TC-GGATACATT-CAACTAGCTT-TATGTTTTT
gi|21 : GATGAAAA--ACATTA--GGCCAGTTTTAT-GTTCGTGAAGCCTGAAG-GGCTTtttc
gi|22 : GTGAAGCCTGAAG-GGATTC---TC-AGCAACATT-AAACTAATCT-
gi|23 : A--GACCCGTTTAAT-GTTCGTGAAGACCGAAG-GGCTTC---TC-GGCtac
gi|24 : TGATGAAAA--ACATTA--CACTAGTTTAAT-GTCCGTGAA
gi|3 : GGATTGAAAGCA-G-ATTTTTTTA-TTT--TTTTA---TCT------GATGATGAAAA--ACATAA--GACTGGTTCTAT-GTCACTGAAGCCCAGAGTGGCTGC---TC-TGTAACATT-GCACTAGACA-TACGACATTCATCACA----GCATGAAAACTCAAAAag
gi|4 : tt-A-ATGTT---G-AGC--TTTCG---TCA------GGTGATGATAC--ACTTTA--GGCTGGGTTAAT-GTCCGTAAAATCCAAAT-GGCTTG---TC-GGTAACATG-AAACTGGACA-ATTGTTTATCATCATCCGATCGATGAAAAGTTGAAAACTC
gi|5 : attttGTGATGAAAA--ACATTA--CAATAGTTTAAT-GTCTGTGATGCCT-----GCCGTC---TC-TGTAACATT-TAACTAGAAT-TATGCATTTCATCACC----AACTTAATACTC--AAATTATGCTTTT
gi|6 : -GACTTC---AC-G--AACATT-AAACTGGCCT-AATGTTTTTCATCACT----CGATGAAAACTC-AAAATTCGGCTTTTAATCCTTATATTTA-------CATTATAT-TCTCCAGCTTTTTttaactaataataa
gi|7 : cTCAGGGATTCAGAGCGTA-GTTCT---G-GGA--TTTCA---TTG------CCTGATGAAAA--ATATTG--TG-TATCTTATT-GTCCATGGAGCCATAAG-GATTAA---TT-CATAACATT-AAACTAAATTAAATGTtagataaaacaattacg
gi|9 : CAATTAAGAATTAAAAGCACA-ATTTT---GTAGG--TTT---------------------GAAA--ACATTA--AGTTAGTTTCAT-GTTAATGAAACCAAAAA-GACTTC----A-GGCAGTATT-AAACgctt
blockSeqs : GCT TTTA CA TCAAGTGAT GT GGG G G T AAC A C A A AA CGAT CA T T TTTA A T . CAG T
blockSeqs : GCA GT . AAATTT . G . A . . . C . A T . TG T .
blockSeqs : ACA G . CATCA . G . A . . . C . T A . A T
blockSeqs : AAC G . ATCG . T . A . . . T . A A . C
blockSeqs : ACT C . TCG . G . G . . . A . C T . C
blockSeqs : GTA T . TTG . A . A . . . C . C T
blockSeqs : ACA G . CCA . G . A . . . A . T A
blockSeqs : AG G . TCG . G . G . . . C . A T
blockSeqs : G . TCT . G . A . . . C . A A
blockSeqs : . . TCA . C . G . . . T . A
blockSeqs : . . TTG . G . G . . . T . C
blockSeqs : . . G . G . . . T . A
blockSeqs : . C . A . . . T .
blockSeqs : . T . A . . . C .
blockSeqs : . A . T . . . . .
blockSeqs : . . . A . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : GCA* C*
originalCons : NNNNNCAATTAAGGATTAAAAGCG-A-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTCAAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
finalCons : NNNNNCAATTAAGGATTAAAAGCGCA-ATTTT---G-AGT--TTTCA---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACC----CGATGAAAACTC-AAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTAAGGGACGGACCATTTTTTTCTTCATTGTTTGAGTGCCAAAATATTTTTTTGACTGGAAAGGTTAATTAGATATTTTTTTAAAGATAAACCCAGGCTAGATTTTTTTTTCA
Alignments
lowQualScore : 111111111111111 333333333333 1 44444444444 1 222
lowQualScore : 55 55 44 555555555555555 33 555 0 2 0 4 2 333 2 2 2 1 55 444444444444 6 3 2 55555555555 1 1 5 000 1
lowQualScore : .. .. .. ............... .. ... . . . . . ... . . . . .. ............ . . . ........... . . . ... .
lowQualScore : 00 88 22 000000000000000 22 444 5 1 2 2 1 999 2 1 5 0 00 222222222222 7 2 0 55555555555 0 0 5 555 0
consensus : NNNNNCAATTAAGGATTAAAAGCGCAA--TTTTG-AGT--TTTC--A---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACCCGA------------TGAAAACT-CAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
Reference ( family-1866 ) : NNNNNCAATTAAGGATTAAAAGCGCAA--TTTTG-AGT--TTTC--A---TCG------GGTGATGAAAA--ACATTA--GGCTAGTTTAAT-GTCCGTGAAGCCCGAAG-GGCTTC---TC-GGCAACATT-AAACTAGNCT-AATGTTTTTCATCACCCGA------------TGAAAACT-CAAAATTCGGCTTTTAATCCCTGTATTTAGAAAAATCNTNATATATCCCCAGCTTTTNTATATT
gi|1 : CAATTAAGGATTAAAAGCA-AA--TTTTG-AGT--TTTC--A---TCA------GGTGATGAAAA--ACATTA--AACCAGTTTAAT-GTCCGTGAAGCCCGAAG-GACTTC---TC-AGCAACATT-AAACTAGCCT-AAAGTTTTTCATCACTCGA------------TGAAAACTAAAAAATTCGCC---TGACCCCTGTA
gi|10 : tttcaTAAGGATTAACAGCGCTA--TTT-------------------CG------AGTGATGGAAA--ACATTC--GTCATGTTAAAT-GATTGTGAAGACTGAAG-GACTTC---TT-GGCAATATGAAAACTAGACatataataacttccttttgttattgc
gi|11 : AGGATTAAAAGCGCAA--TTTT----TCATTTC--AAAATTT------GATGA-AAAAA--ACATTT--GGTTGGTTTAAT-ACCTGTGAAGCACAAA------------C-GGCAACTTT-AAACCAa
gi|12 : tTTAAGGATTAAAACCACAA--TTTTG-AGT--TTAT--A---TTG------GCTGATGGTGA-------------TAGTTTATTGGTCC-CGAAGCCCAAAA-GGCCTC---TC-GG---CATT-AATCTA
gi|13 : atAATTAAGGATTAAAAGTACAA-----TA-AGT--TT
gi|13 : agtattGATTAAAAGTACAATA------AGTTTAAT-GTTAGTGAAGCCCAAAG----TTCAACTT-GGCAACATT-AAACTATACT-TATGTTTaatgttagtgaagcccaaagttcaacttggcaacattaaactatacttatgtttat
gi|14 : agtattaattaagTTTG-AGT--TT-C--A---TCAAGTGATGGTGATGGAAA--ACATTAGGGGCTAA-TTAA-------TAAAGCCC-AAA-GGCTTC---TA-AGTAATTAT-AAACTAGTCat
gi|15 : AATTAAGG-TT------GCAACATTTTC-AGT--TTTT--AA--TCG------GTTGATCAAAA--TTATTA--TGCGAGTTTAAT-GTTTGTGAAGTCCGATG-AGCTTA---TC-GGcta
gi|16 : AATTCAAT-GGTCGTGAAGTCCAAAG-GACTTC---TTAAAAAACATT-GAACTAGATT-AA
gi|17 : aacatgC--A---CCA------TGTGATGAAAA--ACATTG--GGCTGGTTTAAT-GTTCTTGAAGCCCAAAattaggtttctgtttcat
gi|18 : gaaatttcattagattaaagataaaaaaGATTAAAAACACTA--TTTTT-AGT--TTTC--A---TCG------GGTGATGAAAA--ATAATA--AGCAAGTTTAAT-GTTCGTGA
gi|19 : TG-AGT--TTTC--ACA-TCA------AGTAATGAAAA--ATATAA--GGCAAGTT--------CATGAAGCCCGAAA-GGCTTC---TC-GG
gi|2 : GCAACATT-AAACTAGCCT-AATGTTTTTCATCACCCGA------------TGAAAACT-AAAAAGTCGGCTTTTAATCC--GTA---AGAAAAATTCTGATATATTCC---CTTTTATATATT
gi|20 : acaaggacttacatagagatagacaagccgttgagtgcaataCGTGAAGCCCAAAG-GGCTTC---TC-GGATACATT-CAACTAGCTT-TATGTTTTT
gi|21 : GATGAAAA--ACATTA--GGCCAGTTTTAT-GTTCGTGAAGCCTGAAG-GGCTTtttc
gi|22 : GTGAAGCCTGAAG-GGATTC---TC-AGCAACATT-AAACTAATCT-
gi|23 : A--GACCCGTTTAAT-GTTCGTGAAGACCGAAG-GGCTTC---TC-GGCtac
gi|24 : TGATGAAAA--ACATTA--CACTAGTTTAAT-GTCCGTGAA
gi|3 : GGATTGAAAGCAGAT--TTTTT-TAT--TTTTTTA---TCT------GATGATGAAAA--ACATAA--GACTGGTTCTAT-GTCACTGAAGCCCAGAGTGGCTGC---TC-TGTAACATT-GCACTAGACA-TACGACATTCATCACAGCA------------TGAAAACT-CAAAAag
gi|4 : ttAA--TGTTG-AGC--TTTC--G---TCA------GGTGATGATAC--ACTTTA--GGCTGGGTTAAT-GTCCGTAAAATCCAAAT-GGCTTG---TC-GGTAACATG-AAACTGGACA-ATTGTTTATCATCATCCGATCGATGAAAAGTTGAAAACT-CAAAAT
gi|5 : GTGATGAAAA--ACATTA--CAATAGTTTAAT-GTCTGTGATGCCT-----GCCGTC---TC-TGTAACATT-TAACTAGAAT-TATGCATTTCATCACCAAC------------TTAATACT-C-AAATTATGCTTTT
gi|6 : -GACTTC---AC-G--AACATT-AAACTGGCCT-AATGTTTTTCATCACTCGA------------TGAAAACT-CAAAATTCGGCTTTTAATCCTTATATTTA-------CATTATAT-TCTCCAGCTTTTTttaactaataataa
gi|7 : cTCAGGGATTCAGAGCGTAG--TTCTG-GGA--TTTC--A---TTG------CCTGATGAAAA--ATATTG--TG-TATCTTATT-GTCCATGGAGCCATAAG-GATTAA---TT-CATAACATT-AAACTAAATTAAATGTtagataaaacaattacg
gi|9 : CAATTAAGAATTAAAAGCACAA--TTTTGTAGG--TTT-----------------------GAAA--ACATTA--AGTTAGTTTCAT-GTTAATGAAACCAAAAA-GACTTC----A-GGCAGTATT-AAACgctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTAAGGGACGGACCATTTTTTTCTTCATTGTTTGAGTGCCAAAATATTTTTTTGACTGGAAAGGTTAATTAGATATTTTTTTAAAGATAAACCCAGGCTAGATTTTTTTTTCA