lowQualScore : 11111111 2222222222 11 22222222222222 555555555555 1111
lowQualScore : 0 2 99999999 33 3 7 3333333333 3 2 22 777 666 33333333333333 8 3 0 111111111111 9999 1 7 4444
lowQualScore : . . ........ .. . . .......... . . .. ... ... .............. . . . ............ .... . . ....
lowQualScore : 2 9 55555555 44 7 6 4444444444 6 1 00 888 999 33333333333333 4 5 2 444444444444 5555 1 0 7777
consensus : GGTGAAAGAGAACTCTGTC-GTCGATTGA-------TAC--TGATCATAAGTTTAC-C-GN-----TTTTAATTTTA-ATACCTGTCTT-TAT---TGT---AAAC--C-NC-C----T-TTTGCGTCCTTCA--TTGTCTTTTCTTTT--C-TTTATCAAGACC---GAGCTGTCAAAACAT
Reference ( gi|4 ) : GGTGAAAGAGAACTCTGTC-GTCGATTGT-------TAC--TGGTCATGAGTTTAC-C-GT-----TTTTAATTTTA-ATACCTGTCTT-AAT---TGT---AAAC--C-TC-C----T-TTTACGTCTTTCATTTTGTTTTTTGTTTT--C-TTTATCAAAACG---GAGCTGTCAAAACAT
gi|5 : GGTGAAAGAGAACTCTGTC-GTCGATTGT-------TAC--TGGTCATGAGTTTAC-C-GT-----TTTTAATTTTA-ATACCTGTCTT-AAT---TGT---AAAC--C-TC-C----T-TTTACGTCTTTCATTTTGTTTTTTGTTTT--C-TTTATCAAAACG---GAGCTGTCAAAACAT
gi|2 : GGTGAAATAGAACGCTATT-GTTGATTGA-------TAC--TGATCATTAGTCTAT-C-AG-----TTTTAATTTTA-ATACCTGTCTT-TAT---TGT---AAAT--CATT-C----T-TTTGCATCTTTTA--CTGTCTTTTCT-------TTTATAAAGATG---GAGCTGTCAAAACA
gi|3 : gactGGTGAAAGGGAACTCGGAC-ATGAATTGA-------TAC--GGATCATAAGTTTAC-C-CG-----TTTAAATTTTA-ATAACTGTCTT-TAT---TGT---AAAC--C-GC-CA---T-TTTTCGTCATTCA--TTG-----TATTTT--A-TTTATCAAGACC---ACGCTGTCAAAACATaag
gi|8 : actGGTGAAAGAGAACTCTATC-GTCAATAGA-------TAC--TGATCATAAG-TTA--------------------TA-ATACCTGTCTT-TAC---TG----AAAA--G-AC-C----T-GTTGCGTATTTCA--TTGTC-----TTTT--C-TTTAT----ACGGCCGAGTTGTCAAAATATtagg
gi|12 : tggaactGGTGAAAGAAAAGTCTGTC-GTCGATTGA-------TTC--TGATAATAAGTTT------T-----T----ATTTTA-ACAACTATCTT-TAT---TGT---AAAC--A-TC-C----G-TTTTCG---------TTGTCTCTT-TTTT--------TCACGACC---GAGCTTTCAAAACAtgg
gi|9 : tGATGAAAGACAACTCTGCC-GTCGATTAA-------TAC--TGATC---AGTTTACTC-G------TTTTAATTTTA-GTACAAGTCTT-TAT---TGT---AAGC----------------TGCGTCCTT-A-CTTGTCT----TTTC--C-TATATGAAGACC---AATCTGTC
gi|11 : tggtcaaactGGCAAAAGAGAACGCTAGC-GCTGATTGT-------TAC--TGATCATACGTTTAC-C-CG-----TTTAAGTTTTA-ATATCT---TT-ACT---TTTTAAAAAG--C--C-C----T-TTCTCGTCCTT--TGTTGGCTTTTCTTTT--C-
gi|20 : tGGCAGAAGAGAAATCTGTTTACCAATTGTCAGCTGATAC--TGGTTATAAGTCTAC-T-TG-----TTTTAATTTTA-ATGCCTgagaacgaaa
gi|10 : ctgactGTGAAAGAGAATTATGTC-GTAGATTGA-------TAC--TGATCATAAGTTGAC-C-GT-----TTT--ATTTTA-ATACTTGTCTT-TAT---TGT------T--T-TC-CGACAT-TTTGCGTCTTTCA--TTG-----TATTTT--C-TTTATCAAGACC---GA
gi|1 : ctgactaGTGGAAGAGAGCTCCGTC-GTCGATTA--------TAC--ATATCACAAGTTTACTC-GT-----TTT--ATTTTCTTTATCTGTCTT-TAT---TTC---TAAC--C-GC-A----TATGTTCATCCTTCA--TTGTCTTTTCTTTT--A----ATCAAGACC---GAGTTGACAAAACAT
gi|7 : tctggattGAAAGAGAGCTCTGTT-GTCGTTTGA-------TAC--TGATCATAAGTCTAC-T-CC-----TTTTAAATGTA-ATACCTG---T-AATTCCTAT---AAAC--C-GC-C----CATTTGCATCTTTCGTTATATTTCCT---------TTTATCAAGACC---GAGCTATCAAAACAtgg
gi|15 : AAAGGGAAGTCCA-C-GTTGATTGT-------TAC--TGATCA--------------------TTTAATTTTA-ATACCTGTCTT-TAT---TGT---AAAC--C-TA---------TTGCGTCCTTTA--TTGTCTTATCTTTTAGC-T-------GACT---GAGCTGTCAAAACAT
gi|6 : AAGGAGAACTCTGCC-ATCGATTGG-------TACTTTGGTTAC--GTTTAC-T-CT-----TCCTGGTTTTA-ACAT---TCTCGAATTTGTGT---AAAC--C-AC-CA---T-TTTGCGTTGTCC------TTAATTGTTCT--C-TCTG--AAGCCT---GAGTTGTCAAAAtg
gi|14 : ttgcaTGTC-GTCTATTGA-------TAC--TGATGATAAGTTT---------------TATTTCTA-ATACCTGTCTT-TAT---TGT---AAAC--TACC-C----T-TTCGTGTCTTTTA-------TTTTCTTTT--CATTTATCAAGACT---AAGCTGTCAAAATAT
gi|18 : GATTGG-------TAC--TGATCATACGTTTAC-C-CG-----TTTAAGTTTTA-ATATCT---TT-ATT---TTTTA-AAAC--G-CC-C----T-TTCTCGTCCTTCG--TTGGCTTTTCTTTT--C-tgg
gi|16 : tagcgca-------TAC--TGTTCATAATTTGAC-C-TG-----TTTTAATGTTA-ATACCTGTCTT-TAT---TGT---AGAC--T-GCAC----T-TTTGCATCCTGCA---------CTGTCTT--CATTTATCTAGGCC---AAGCTGTCAAAACATgataacgaaat
gi|23 : aGATCATAAGTTTAC-C-GTACCCGTTTCAATTTTA-ATACCTGTCTT-TAT---TGT---tgg
gi|13 : TGGGTTTTT-C-AG-----TTTTAATATTA-ATACCTGTCTC-TAT---TGT---TAGCGGC--C-C----T-TTTGTGTCTTTCA--TTGTC-----TCTT--C-TTTATCAAGACC---GAGCTATCAAAAC
gi|19 : gtctgactggtgaaaagagaacGTTTAC-CCAT-----CATTATGTTTA--TACCCATCTT-TAT---TGT---AAAT--C-ACAC----T-TTTGTGTC---CAAATTGTATTTTCTTTT-------ATCAATAAT---GAGCTGTCAAAACA
gi|17 : tTTC--T-TTTATCGATACC---GAGCTGTCAAAACctgaag
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ACTGACTGGTCGGACTGGTGAAAGAGATTGAATTTACTCATTTTAACTGTAATACATGTCTCCTTCATTGT
Unaligned ( gi|22 ): GCCCTTTCGCGTGTTTCATTGTATTTTCATTTGGAGAACGACCTGCCAAAACAT
Alignments
lowQualScore : 1111111 111 1111111
lowQualScore : 99999999 33 7777777 0 2 333 333 222 4 6 4 333 55 555555 2222222
lowQualScore : ........ .. ....... . . ... ... ... . . . ... .. ...... .......
lowQualScore : 77777777 11 9999999 5 1 777 777 999 2 3 2 555 55 111111 8888888
consensus : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACCCG-----TTTTAATTTTAATACCTGT-C---TTTATTGT---AAACC-GC-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
Reference ( family-1799 ) : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACCGN-----TTTTAATTTTAATACCTGT-C---TTTATTGT---AAACC-NC-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
gi|1 : GTGGAAGAGAGCTCCGTC--------GTCGATT-ATACA--TATCACAAGTTTACTCG-----TTTTATTTTCTTTATCTGT-C---TTTATTTC---TAACC-GC-A-TATGTTCAT---CCTTCA--TTGTCTT--TTCTTTT--A----ATCAAGACCGAGTTGACAAAACAT
gi|10 : tctggattGTGAAAGAGAATTATGTC--------GTAGATTGATACT--GATCATAAGTTGACCGT-----TTT--ATTTTAATACTTGT-C---TTTATTGT---TTTCCGAC-A-T-TTTGCGT---CTTTCA--TTG-------TATTTT--C-TTTATCAAGACCGAtgg
gi|11 : ctgactaGGCAAAAGAGAACGCTAGC--------GCTGATTGTTACT--GATCATACGTTTACCCG-----TTTAAGTTTTAATATCTTTAC---TTT-TTAA---AAAGC--C-C-T-TTCTCGT---CCTTTG--TTGGCTT--TTCTTTT--C-
gi|12 : tGGTGAAAGAAAAGTCTGTC--------GTCGATTGATTCT--GATAATAAGTTT----------TT---ATTTTAACAACTAT-C---TTTATTGT---AAACA-TC-C-G-TT----------TTCG--TTGTCTC--TTTTTT---------TCACGACCGAGCTTTCAAAACAgagaacgaaa
gi|13 : tGTTTTTCAG-----TTTTAATATTAATACCTGT-C---TCTATTGT---TAGCG-GC-CCT-TTTGTGT---CTTTCA--TTGTCTC--TTCT--------TTATCAAGACCGAGCTATCAAAAC
gi|14 : gtctgactggtgaaaagagaactggTGTC--------GTCTATTGATACT--GATGATAAGTTT-------------TATTTCTAATACCTGT-C---TTTATTGT---AAACTACC-C-T-TTCGTGT---CTTTTA-------TT--TTCTTTT--CATTTATCAAGACTAAGCTGTCAAAATAT
gi|15 : AAAGGGAAGTCCA-C--------GTTGATTGTTACT--GATCA------------------TTTAATTTTAATACCTGT-C---TTTATTGT---AAA----C-C-T-ATTGCGT---CCTTTA--TTGTCTT--ATCTTTTAGC-T-------GACTGAGCTGTCAAAACATtgg
gi|16 : ATACT--GTTCATAATTTGACCTG-----TTTTAATGTTAATACCTGT-C---TTTATTGT---AGACT-GCAC-T-TTTGCAT---CCTGCA--CTGTC---------TT--CATTTATCTAGGCCAAGCTGTCAAAACATtg
gi|17 : TTGC-----CCTTTA--GTGTCCTCATTCCTTC--T-TTTATCGATACCGAGCTGTCAAAACtgg
gi|18 : tccattgttcaattcagtaaccgacagttatttgtatacatgcaatcattttctgttaaaGATTGGTACT--GATCATACGTTTACCCG-----TTTAAGTTTTAATA----T-C---TTTATTTTTTAAAACG-CC-C-T-TTCTCGT---CCTTCG--TTGGCTT--TTCTTTT--C-
gi|19 : tagcgcaGTTTACCCA-----TCATTATGTTTATACCCAT-C---TTTATTGT---AAATC-ACAC-T-TTTGTGT---CC-AAA--TTGTATT--TTCT-------TTTATCAATAATGAGCTGTCAAAACAgataacgaaat
gi|2 : tGGTGAAATAGAACGCTATT--------GTTGATTGATACT--GATCATTAGTCTATCAG-----TTTTAATTTTAATACCTGT-C---TTTATTGT---AAATCATT-C-T-TTTGCAT---CTTTTA--CTGTCTT--TTCT-------TTTATAAAGATGGAGCTGTCAAAACActgaag
gi|20 : gactGGCAGAAGAGAAATCTGTTTACCAATTGTCAGCTGATACT--GGTTATAAGTCTACTTG-----TTTTAATTTTAATGCCTaag
gi|22 : ctgactC-C-T-TTCGCGT---GTTTCA--TTGTATT--TTCATT---------TGGAGAACGACCTGCCAAAACAT
gi|23 : gc--GATCATAAGTTTACCGTACCCGTTTCAATTTTAATACCTGT-C---TTTATTGT---
gi|3 : GGTGAAAGGGAACTCGGAC--------ATGAATTGATACG--GATCATAAGTTTACCCG-----TTTAAATTTTAATAACTGT-C---TTTATTGT---AAACC-GC-CAT-TTTTCGT---CATTCA--TTG-------TATTTT--A-TTTATCAAGACCACGCTGTCAAAACAT
gi|4 : actGGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACCGT-----TTTTAATTTTAATACCTGT-C---TTAATTGT---AAACC-TC-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACATtagg
gi|5 : GGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACCGT-----TTTTAATTTTAATACCTGT-C---TTAATTGT---AAACC-TC-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACAT
gi|6 : AAGGAGAACTCTGCC--------ATCGATTGGTACTTTGGT--TACGTTTACTCT-----TCCTGGTTTTAACAT-TCT-CGAATTTGT-GT---AAACC-AC-CAT-TTTGCGTTGTCCTTAA--TTGT-----------T--C-TCTCTGAAGCCTGAGTTGTCAAAA
gi|7 : ttgcaGAAAGAGAGCTCTGTT--------GTCGTTTGATACT--GATCATAAGTCTACTCC-----TTTTAAATGTAATACCTGT-A---ATTCCTAT---AAACC-GC-C-CATTTGCAT---CTTTCG--TTATATT--TCCT-------TTTATCAAGACCGAGCTATCAAAACA
gi|8 : GGTGAAAGAGAACTCTATC--------GTCAATAGATACT--GATCATAAGTT----------------AT---AATACCTGT-C---TTTACTG----AAAAG-AC-C-T-GTTGCGT---ATTTCA--TTG-------TCTTTT--C-TTTAT-ACGGCCGAGTTGTCAAAATAT
gi|9 : tggaactGATGAAAGACAACTCTGCC--------GTCGATTAATACT--GATC---AGTTTACTCG-----TTTTAATTTTAGTACAAGT-C---TTTATTGT---AAGC-----------TGCGT---CCTTAC--TTGTCTT--TTC------C-TATATGAAGACCAATCTGTCtgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACTGACTGGTCGGACTGGTGAAAGAGATTGAATTTACTCATTTTAACTGTAATACATGTCTCCTTCATTGT
Alignments
lowQualScore : 111 1111111
lowQualScore : 99999999 33 7777777 2 333 22 222 4 6 4 333 55 555555 2222222
lowQualScore : ........ .. ....... . ... .. ... . . . ... .. ...... .......
lowQualScore : 77777777 11 4444444 1 777 99 777 2 3 2 555 55 111111 8888888
consensus : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
Reference ( family-1799 ) : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
gi|1 : GTGGAAGAGAGCTCCGTC--------GTCGATT-ATACA--TATCACAAGTTTACT-----CGTTTTATTTTCTTTATCTGT-C---TTTA--TTTCTAACCG-C-A-TATGTTCAT---CCTTCA--TTGTCTT--TTCTTTT--A----ATCAAGACCGAGTTGACAAAACAT
gi|10 : tctggattGTGAAAGAGAATTATGTC--------GTAGATTGATACT--GATCATAAGTTGA-C-----CGTTTT-ATTTTAATACTTGT-C---TTTA--TTGTTTTCCGAC-A-T-TTTGCGT---CTTTCA--TTG-------TATTTT--C-TTTATCAAGACCGAtgg
gi|11 : ctgactaGGCAAAAGAGAACGCTAGC--------GCTGATTGTTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATATCTTTAC---TTT---TTAAAAAGC--C-C-T-TTCTCGT---CCTTTG--TTGGCTT--TTCTTTT--C-
gi|12 : tGGTGAAAGAAAAGTCTGTC--------GTCGATTGATTCT--GATAATAAGTTT----------TT---ATTTTAACAACTAT-C---TTTA--TTGTAAACAT-C-C-G-TT----------TTCG--TTGTCTC--TTTTTT---------TCACGACCGAGCTTTCAAAACAgagaacgaaa
gi|13 : tGTTTTTC-----AGTTTTAATATTAATACCTGT-C---TCTA--TTGTTAGCGG-C-CCT-TTTGTGT---CTTTCA--TTGTCTC--TTCT--------TTATCAAGACCGAGCTATCAAAAC
gi|14 : gtctgactggtgaaaagagaactggTGTC--------GTCTATTGATACT--GATGATAAGTTT-------------TATTTCTAATACCTGT-C---TTTA--TTGTAAACTACC-C-T-TTCGTGT---CTTTTA-------TT--TTCTTTT--CATTTATCAAGACTAAGCTGTCAAAATAT
gi|15 : AAAGGGAAGTCCA-C--------GTTGATTGTTACT--GATCAT------------------TTAATTTTAATACCTGT-C---TTTA--TTGTAAA----C-C-T-ATTGCGT---CCTTTA--TTGTCTT--ATCTTTTAGC-T-------GACTGAGCTGTCAAAACATtgg
gi|16 : ATACT--GTTCATAATTTGACC-----TGTTTTAATGTTAATACCTGT-C---TTTA--TTGTAGACTG-CAC-T-TTTGCAT---CCTGCA--CTGTC---------TT--CATTTATCTAGGCCAAGCTGTCAAAACATtg
gi|17 : TTGC-----CCTTTA--GTGTCCTCATTCCTTC--T-TTTATCGATACCGAGCTGTCAAAACtgg
gi|18 : tccattgttcaattcagtaaccgacagttatttgtatacatgcaatcattttctgttaaaGATTGGTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATA----T-C---TTTATTTTTTAAAACGCC-C-T-TTCTCGT---CCTTCG--TTGGCTT--TTCTTTT--C-
gi|19 : tagcgcaGTTTACC-----CATCATTATGTTTATACCCAT-C---TTTA--TTGTAAATCA-CAC-T-TTTGTGT---CC-AAA--TTGTATT--TTCT-------TTTATCAATAATGAGCTGTCAAAACAgataacgaaat
gi|2 : tGGTGAAATAGAACGCTATT--------GTTGATTGATACT--GATCATTAGTCTATC-----AGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAATCATT-C-T-TTTGCAT---CTTTTA--CTGTCTT--TTCT-------TTTATAAAGATGGAGCTGTCAAAACActgaag
gi|20 : gactGGCAGAAGAGAAATCTGTTTACCAATTGTCAGCTGATACT--GGTTATAAGTCTACT-----TGTTTTAATTTTAATGCCTaag
gi|22 : ctgact-C-C-T-TTCGCGT---GTTTCA--TTGTATT--TTCATT---------TGGAGAACGACCTGCCAAAACAT
gi|23 : gc--GATCATAAGTTTACCGTACCCGTTTCAATTTTAATACCTGT-C---TTTA--TTGT
gi|3 : GGTGAAAGGGAACTCGGAC--------ATGAATTGATACG--GATCATAAGTTTACC-----CGTTTAAATTTTAATAACTGT-C---TTTA--TTGTAAACCG-C-CAT-TTTTCGT---CATTCA--TTG-------TATTTT--A-TTTATCAAGACCACGCTGTCAAAACAT
gi|4 : actGGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACATtagg
gi|5 : GGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACAT
gi|6 : AAGGAGAACTCTGCC--------ATCGATTGGTACTTTGGT--TACGTTTACT-----CTTCCTGGTTTTAACAT-TCT-CGAATTTG--T-GTAAACCA-C-CAT-TTTGCGTTGTCCTTAA--TTGT-----------T--C-TCTCTGAAGCCTGAGTTGTCAAAA
gi|7 : ttgcaGAAAGAGAGCTCTGTT--------GTCGTTTGATACT--GATCATAAGTCTACT-----CCTTTTAAATGTAATACCTGT-A---ATTC--CTATAAACCG-C-C-CATTTGCAT---CTTTCG--TTATATT--TCCT-------TTTATCAAGACCGAGCTATCAAAACA
gi|8 : GGTGAAAGAGAACTCTATC--------GTCAATAGATACT--GATCATAAGTT----------------AT---AATACCTGT-C---TTTA--CTG-AAAAGA-C-C-T-GTTGCGT---ATTTCA--TTG-------TCTTTT--C-TTTAT-ACGGCCGAGTTGTCAAAATAT
gi|9 : tggaactGATGAAAGACAACTCTGCC--------GTCGATTAATACT--GATCA---GTTTACT-----CGTTTTAATTTTAGTACAAGT-C---TTTA--TTGTAAGC-----------TGCGT---CCTTAC--TTGTCTT--TTC------C-TATATGAAGACCAATCTGTCtgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACTGACTGGTCGGACTGGTGAAAGAGATTGAATTTACTCATTTTAACTGTAATACATGTCTCCTTCATTGT
Alignments
lowQualScore : 111 1111111
lowQualScore : 99999999 33 7777777 2 333 22 222 4 6 4 333 55 555555 2222222
lowQualScore : ........ .. ....... . ... .. ... . . . ... .. ...... .......
lowQualScore : 77777777 11 4444444 1 777 99 777 2 3 2 555 55 111111 8888888
consensus : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
Reference ( family-1799 ) : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
gi|1 : GTGGAAGAGAGCTCCGTC--------GTCGATT-ATACA--TATCACAAGTTTACT-----CGTTTTATTTTCTTTATCTGT-C---TTTA--TTTCTAACCG-C-A-TATGTTCAT---CCTTCA--TTGTCTT--TTCTTTT--A----ATCAAGACCGAGTTGACAAAACAT
gi|10 : tctggattGTGAAAGAGAATTATGTC--------GTAGATTGATACT--GATCATAAGTTGA-C-----CGTTTT-ATTTTAATACTTGT-C---TTTA--TTGTTTTCCGAC-A-T-TTTGCGT---CTTTCA--TTG-------TATTTT--C-TTTATCAAGACCGAtgg
gi|11 : ctgactaGGCAAAAGAGAACGCTAGC--------GCTGATTGTTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATATCTTTAC---TTT---TTAAAAAGC--C-C-T-TTCTCGT---CCTTTG--TTGGCTT--TTCTTTT--C-
gi|12 : tGGTGAAAGAAAAGTCTGTC--------GTCGATTGATTCT--GATAATAAGTTT----------TT---ATTTTAACAACTAT-C---TTTA--TTGTAAACAT-C-C-G-TT----------TTCG--TTGTCTC--TTTTTT---------TCACGACCGAGCTTTCAAAACAgagaacgaaa
gi|13 : tGTTTTTC-----AGTTTTAATATTAATACCTGT-C---TCTA--TTGTTAGCGG-C-CCT-TTTGTGT---CTTTCA--TTGTCTC--TTCT--------TTATCAAGACCGAGCTATCAAAAC
gi|14 : gtctgactggtgaaaagagaactggTGTC--------GTCTATTGATACT--GATGATAAGTTT-------------TATTTCTAATACCTGT-C---TTTA--TTGTAAACTACC-C-T-TTCGTGT---CTTTTA-------TT--TTCTTTT--CATTTATCAAGACTAAGCTGTCAAAATAT
gi|15 : AAAGGGAAGTCCA-C--------GTTGATTGTTACT--GATCAT------------------TTAATTTTAATACCTGT-C---TTTA--TTGTAAA----C-C-T-ATTGCGT---CCTTTA--TTGTCTT--ATCTTTTAGC-T-------GACTGAGCTGTCAAAACATtgg
gi|16 : ATACT--GTTCATAATTTGACC-----TGTTTTAATGTTAATACCTGT-C---TTTA--TTGTAGACTG-CAC-T-TTTGCAT---CCTGCA--CTGTC---------TT--CATTTATCTAGGCCAAGCTGTCAAAACATtg
gi|17 : TTGC-----CCTTTA--GTGTCCTCATTCCTTC--T-TTTATCGATACCGAGCTGTCAAAACtgg
gi|18 : tccattgttcaattcagtaaccgacagttatttgtatacatgcaatcattttctgttaaaGATTGGTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATA----T-C---TTTATTTTTTAAAACGCC-C-T-TTCTCGT---CCTTCG--TTGGCTT--TTCTTTT--C-
gi|19 : tagcgcaGTTTACC-----CATCATTATGTTTATACCCAT-C---TTTA--TTGTAAATCA-CAC-T-TTTGTGT---CC-AAA--TTGTATT--TTCT-------TTTATCAATAATGAGCTGTCAAAACAgataacgaaat
gi|2 : tGGTGAAATAGAACGCTATT--------GTTGATTGATACT--GATCATTAGTCTATC-----AGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAATCATT-C-T-TTTGCAT---CTTTTA--CTGTCTT--TTCT-------TTTATAAAGATGGAGCTGTCAAAACActgaag
gi|20 : gactGGCAGAAGAGAAATCTGTTTACCAATTGTCAGCTGATACT--GGTTATAAGTCTACT-----TGTTTTAATTTTAATGCCTaag
gi|22 : ctgact-C-C-T-TTCGCGT---GTTTCA--TTGTATT--TTCATT---------TGGAGAACGACCTGCCAAAACAT
gi|23 : gc--GATCATAAGTTTACCGTACCCGTTTCAATTTTAATACCTGT-C---TTTA--TTGT
gi|3 : GGTGAAAGGGAACTCGGAC--------ATGAATTGATACG--GATCATAAGTTTACC-----CGTTTAAATTTTAATAACTGT-C---TTTA--TTGTAAACCG-C-CAT-TTTTCGT---CATTCA--TTG-------TATTTT--A-TTTATCAAGACCACGCTGTCAAAACAT
gi|4 : actGGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACATtagg
gi|5 : GGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACAT
gi|6 : AAGGAGAACTCTGCC--------ATCGATTGGTACTTTGGT--TACGTTTACT-----CTTCCTGGTTTTAACAT-TCT-CGAATTTG--T-GTAAACCA-C-CAT-TTTGCGTTGTCCTTAA--TTGT-----------T--C-TCTCTGAAGCCTGAGTTGTCAAAA
gi|7 : ttgcaGAAAGAGAGCTCTGTT--------GTCGTTTGATACT--GATCATAAGTCTACT-----CCTTTTAAATGTAATACCTGT-A---ATTC--CTATAAACCG-C-C-CATTTGCAT---CTTTCG--TTATATT--TCCT-------TTTATCAAGACCGAGCTATCAAAACA
gi|8 : GGTGAAAGAGAACTCTATC--------GTCAATAGATACT--GATCATAAGTT----------------AT---AATACCTGT-C---TTTA--CTG-AAAAGA-C-C-T-GTTGCGT---ATTTCA--TTG-------TCTTTT--C-TTTAT-ACGGCCGAGTTGTCAAAATAT
gi|9 : tggaactGATGAAAGACAACTCTGCC--------GTCGATTAATACT--GATCA---GTTTACT-----CGTTTTAATTTTAGTACAAGT-C---TTTA--TTGTAAGC-----------TGCGT---CCTTAC--TTGTCTT--TTC------C-TATATGAAGACCAATCTGTCtgg
blockSeqs : TACCAATT TT GTACCCG A GAA TT CGA A C A TGT TT TCCTCA TTTAGC
blockSeqs : . . CG . . . TAC A A . . TT GCTT TTTCA
blockSeqs : . . CG . . . CGC . A . . . TCTC TTTC
blockSeqs : . . AG . . . CAT . . . . . TCTC TTTC
blockSeqs : . . TG . . . AT . . . . . TCTT TTCA
blockSeqs : . . CG . . . GG . . . . . GCTT TTCT
blockSeqs : . . CA . . . TG . . . . . TATT TTTC
blockSeqs : . . AG . . . CA . . . . . TCTT TTTA
blockSeqs : . . TG . . . CG . . . . . TATT TTTC
blockSeqs : . . CG . . . CT . . . . . TTTT TTTC
blockSeqs : . . GT . . . CT . . . . . TTTT TTTC
blockSeqs : . . GT . . . CA . . . . . TATT TT
blockSeqs : . . CT . . . CG . . . . . TCTT TT
blockSeqs : . . CC . . . GA . . . . . TT TC
blockSeqs : . CG . . . C . . . . . TC C
blockSeqs : . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
finalCons : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACTGACTGGTCGGACTGGTGAAAGAGATTGAATTTACTCATTTTAACTGTAATACATGTCTCCTTCATTGT
Alignments
lowQualScore : 111 1111111
lowQualScore : 99999999 33 7777777 2 333 22 222 4 6 4 333 55 555555 2222222
lowQualScore : ........ .. ....... . ... .. ... . . . ... .. ...... .......
lowQualScore : 77777777 11 4444444 1 777 99 777 2 3 2 555 55 111111 8888888
consensus : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
Reference ( family-1799 ) : GGTGAAAGAGAACTCTGTC--------GTCGATTGATACT--GATCATAAGTTTACC-----CGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAACCG-C-C-T-TTTGCGT---CCTTCA--TTGTCTT--TTCTTTT--C-TTTATCAAGACCGAGCTGTCAAAACAT
gi|1 : GTGGAAGAGAGCTCCGTC--------GTCGATT-ATACA--TATCACAAGTTTACT-----CGTTTTATTTTCTTTATCTGT-C---TTTA--TTTCTAACCG-C-A-TATGTTCAT---CCTTCA--TTGTCTT--TTCTTTT--A----ATCAAGACCGAGTTGACAAAACAT
gi|10 : tctggattGTGAAAGAGAATTATGTC--------GTAGATTGATACT--GATCATAAGTTGA-C-----CGTTTT-ATTTTAATACTTGT-C---TTTA--TTGTTTTCCGAC-A-T-TTTGCGT---CTTTCA--TTG-------TATTTT--C-TTTATCAAGACCGAtgg
gi|11 : ctgactaGGCAAAAGAGAACGCTAGC--------GCTGATTGTTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATATCTTTAC---TTT---TTAAAAAGC--C-C-T-TTCTCGT---CCTTTG--TTGGCTT--TTCTTTT--C-
gi|12 : tGGTGAAAGAAAAGTCTGTC--------GTCGATTGATTCT--GATAATAAGTTT----------TT---ATTTTAACAACTAT-C---TTTA--TTGTAAACAT-C-C-G-TT----------TTCG--TTGTCTC--TTTTTT---------TCACGACCGAGCTTTCAAAACAgagaacgaaa
gi|13 : tGTTTTTC-----AGTTTTAATATTAATACCTGT-C---TCTA--TTGTTAGCGG-C-CCT-TTTGTGT---CTTTCA--TTGTCTC--TTCT--------TTATCAAGACCGAGCTATCAAAAC
gi|14 : gtctgactggtgaaaagagaactggTGTC--------GTCTATTGATACT--GATGATAAGTTT-------------TATTTCTAATACCTGT-C---TTTA--TTGTAAACTACC-C-T-TTCGTGT---CTTTTA-------TT--TTCTTTT--CATTTATCAAGACTAAGCTGTCAAAATAT
gi|15 : AAAGGGAAGTCCA-C--------GTTGATTGTTACT--GATCAT------------------TTAATTTTAATACCTGT-C---TTTA--TTGTAAA----C-C-T-ATTGCGT---CCTTTA--TTGTCTT--ATCTTTTAGC-T-------GACTGAGCTGTCAAAACATtgg
gi|16 : ATACT--GTTCATAATTTGACC-----TGTTTTAATGTTAATACCTGT-C---TTTA--TTGTAGACTG-CAC-T-TTTGCAT---CCTGCA--CTGTC---------TT--CATTTATCTAGGCCAAGCTGTCAAAACATtg
gi|17 : TTGC-----CCTTTA--GTGTCCTCATTCCTTC--T-TTTATCGATACCGAGCTGTCAAAACtgg
gi|18 : tccattgttcaattcagtaaccgacagttatttgtatacatgcaatcattttctgttaaaGATTGGTACT--GATCATACGTTTACC-----CGTTTAAGTTTTAATA----T-C---TTTATTTTTTAAAACGCC-C-T-TTCTCGT---CCTTCG--TTGGCTT--TTCTTTT--C-
gi|19 : tagcgcaGTTTACC-----CATCATTATGTTTATACCCAT-C---TTTA--TTGTAAATCA-CAC-T-TTTGTGT---CC-AAA--TTGTATT--TTCT-------TTTATCAATAATGAGCTGTCAAAACAgataacgaaat
gi|2 : tGGTGAAATAGAACGCTATT--------GTTGATTGATACT--GATCATTAGTCTATC-----AGTTTTAATTTTAATACCTGT-C---TTTA--TTGTAAATCATT-C-T-TTTGCAT---CTTTTA--CTGTCTT--TTCT-------TTTATAAAGATGGAGCTGTCAAAACActgaag
gi|20 : gactGGCAGAAGAGAAATCTGTTTACCAATTGTCAGCTGATACT--GGTTATAAGTCTACT-----TGTTTTAATTTTAATGCCTaag
gi|22 : ctgact-C-C-T-TTCGCGT---GTTTCA--TTGTATT--TTCATT---------TGGAGAACGACCTGCCAAAACAT
gi|23 : gc--GATCATAAGTTTACCGTACCCGTTTCAATTTTAATACCTGT-C---TTTA--TTGT
gi|3 : GGTGAAAGGGAACTCGGAC--------ATGAATTGATACG--GATCATAAGTTTACC-----CGTTTAAATTTTAATAACTGT-C---TTTA--TTGTAAACCG-C-CAT-TTTTCGT---CATTCA--TTG-------TATTTT--A-TTTATCAAGACCACGCTGTCAAAACAT
gi|4 : actGGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACATtagg
gi|5 : GGTGAAAGAGAACTCTGTC--------GTCGATTGTTACT--GGTCATGAGTTTACC-----GTTTTTAATTTTAATACCTGT-C---TTAA--TTGTAAACCT-C-C-T-TTTACGT---CTTTCATTTTGTTTT--TTGTTTT--C-TTTATCAAAACGGAGCTGTCAAAACAT
gi|6 : AAGGAGAACTCTGCC--------ATCGATTGGTACTTTGGT--TACGTTTACT-----CTTCCTGGTTTTAACAT-TCT-CGAATTTG--T-GTAAACCA-C-CAT-TTTGCGTTGTCCTTAA--TTGT-----------T--C-TCTCTGAAGCCTGAGTTGTCAAAA
gi|7 : ttgcaGAAAGAGAGCTCTGTT--------GTCGTTTGATACT--GATCATAAGTCTACT-----CCTTTTAAATGTAATACCTGT-A---ATTC--CTATAAACCG-C-C-CATTTGCAT---CTTTCG--TTATATT--TCCT-------TTTATCAAGACCGAGCTATCAAAACA
gi|8 : GGTGAAAGAGAACTCTATC--------GTCAATAGATACT--GATCATAAGTT----------------AT---AATACCTGT-C---TTTA--CTG-AAAAGA-C-C-T-GTTGCGT---ATTTCA--TTG-------TCTTTT--C-TTTAT-ACGGCCGAGTTGTCAAAATAT
gi|9 : tggaactGATGAAAGACAACTCTGCC--------GTCGATTAATACT--GATCA---GTTTACT-----CGTTTTAATTTTAGTACAAGT-C---TTTA--TTGTAAGC-----------TGCGT---CCTTAC--TTGTCTT--TTC------C-TATATGAAGACCAATCTGTCtgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACTGACTGGTCGGACTGGTGAAAGAGATTGAATTTACTCATTTTAACTGTAATACATGTCTCCTTCATTGT