lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111111111111111111111111111111111
lowQualScore : 2222222 55555555555555 1 11 11 6666666666666666666666666666666 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333333333 1111 2222 1111 000000000000000000000000000000000000000 22 11 222222 1
lowQualScore : 11 4444444 2 88888888888888 0 11 2 00 3 1 3 3 8888888888888888888888888888888 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 99 1 000000000 3333 0 9999 4444 7 3 444444444444444444444444444444444444444 99 55 7 99 11 77 222222 2
lowQualScore : .. ....... . .............. . .. . .. . . . . ............................... . .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .. .. . ......... .... . .... .... . . ....................................... .. .. . .. .. .. ...... .
lowQualScore : 77 7777777 2 55555555555555 0 00 5 00 2 2 2 0 0000000000000000000000000000000 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 66 4 666666666 0000 1 8888 2222 5 3 333333333333333333333333333333333333333 22 55 5 22 22 88 000000 0
consensus : NAAGGTATAAGATAATTCCGGTATAAAGGCGTNTTGGATCTATAA-AATATCGAATGAAGTTTTAAATAAATT--N----NGTACNAAACAGTANCAAGNTC--CTTCGGTAAGCAC--GT-----AC-------GAN--TTGTNTACNTT-TC-----CACATATT-TA-CATTNAAGA--GAAGCTTACGTG--ACTAATTCAAA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTG--GCCTGTTATTTCGACCATGCATTCTT-------TAAAAATGCTAAAT-------TTAACAGA--NTNTGTATGTG--GANTGTT----TN------T-GAA-TAN-TAT--CATTTCTTTT----AAATAACA--TATACATTCGAATCGCTGGTACT---GCGTTTAGACAAATCCTANGTATTCCCA----TGNA--TNTN----AA-----------CTT---TCG--G-ACC-TTG--T-TCTATATTGCCTNCGA-GC-G--A---TTTNATGCT-AGNCNTTCCGCCAAATNCACGGGC---TGACGTC---A------TCT--A---ATGCT----------CTTC-T------------AGATACTTGGACG--ATA--CTT-G-TACCTAN-TAT-TGATTTTTTT-CG-CTCAAATGGTAG---ACA-TTA-TNTNCCCTAGTGA--TCTCCAGCTCGACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACNTACAT--NTCTC---TATTAATAATGG-TTTTT--TAA------GNACAAAAA-TATAA-A---TGAC--AAAAGAGATGGTTTT--GATTTCGATATTGTT-A-NTTTTTCTCATT
Reference ( gi|1 ) : CAAGACATACGACGAGTCTAGTATAAA--TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAATAAATT--A----AGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCAC--GT-----AC-------CAA--TTGTACACGTT-TC-----CGCAAATT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTG--ACCTATTAGTGCGACAGTGC-TTACT-------TA------CTAAAT-------TTGACAGA--ATTTATATGTG--GACT--T----TG------A-GAA-CAC-TAT--CATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTGTTTAGACAACTTGCAAGTATTCCTA----TAAG--TTTT----AA-----------TTT---TGG--G-ACTATTG--T-TCCATACTGTCTACAA-GC-G--A---TTAAATGCT-GGTCGTT-CGCCATATTTACAGGC---TGTTATC---A------CCTG-A---ATGC-----------CTTC-T------------AGATACTTGGACG--ATA-GCTT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAAAACAGTAG---ACA-TTA-CATACACTAGTGA--TCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACATACAC--ATCTT---TATCAATGATGA-ATTTC--TAA------GTACAAGAG-TATAATATTCTGAC--AAATGAGATGACTTT--GATTTCGATAATGAT-A-TTTTTTCTGATTA
gi|2 : AAGATATAATAGAATTCTGATATAAAAGTGTTTT-GATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAG-CAGTATCTAGCTTGACT--GGTAAGCAA--TT-----ACGTTTTTTCAA--CGATGTTCCTT-TCTTTATCACACATT-T---GCTTAAAATCAAAGCTTAAATC--ACTAATTCGAG--ATATGATT--------------------TTCTG--GCCTGTTATTTTGACCATACATTCTT-------TAAAATG-CTTAAT-------TTAACAGATTGTCCGTCTGTT--GAATGTT----TC------T-GAA-TATATAC--CATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTGTTTAGACAAGTCCTAAGTATTCCCA----TGTA--TACC----AA-------------T---TGA--GCACCATT------------TGTC-GCGATGC-T--A---TTTTACGCTAGACCTTT-CATCAAGTGCGCAGGC---AGGTGTC---G------TCT------ATTC-----------CTCCATTATTACTACAAGAGATA--TGGACG--GTA--------TACCTAA-TAT----CTTTTTTACG-CTCAAATGGT
gi|8 : aaagaacatattaaactatatcttttttAAAGCATGCGATTATTCCGGTATAAC--TGTGTT-GATCAATAA-AAAATCGAATGAAA--TTGCATA---T--C----AG-ACGGTATAAT-GC----TC--CTTCGTTAAGCAC--AT-----AC-------GAC--TTGTCAACGTTGTA-----CAC-TATT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAATTTA-AAATCCATCCATGC-TTTCTTTATTTATA------GTAAAA-------TTGACAGA--GTT
gi|11 : AAGGTATAAGGTACGTCTGGTATAAA--TTTGTTG--TG--CAA-AAC-TCGA-TGAAGTTTTTAATAAAGT--A----CGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCAT--GA-----AC-------GAC--TT-T---CGTT-TC-------AAAGTT-TAACACTA
gi|3 : tgccgcctttaaagaacagatgaaattgtattgtgatAGTGTAAAGGCATTCTAG-TCTATAA-AATAT--------GTTTTAAATAAATC--T----TGTACTAAACAGAAACAACATT--ATTCGGTAAGCACTAGCGAAAGAT-------CAACGTTGTATAC-T--------------ATT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTG--GCCTGTTATTTCAACTTTGCATTTTT-------TAAAAATGCTAAAT-------TTAGCAGA--TTGTGTATGTA--AACT--TATCATGTCGTTTATGAATCAA-AAT--CATTTCTTT----AAAATATTA--TAATCATTC-GATC-------------CGTTTGGACAAACTGTATGTATTCATACGGGTAAAACTCTTACAGAA-----------CTTGTCTCA--G-AT--TTG--TCTCTATATTG-CTACGA-GTAG--AATGTT--ATGCA-AGACATTCCGCCAAATTCACCGAC---TGATGTC---A------TC---A---ATGCTTTCAATAATACTTC-T------------AGATACTTGctttaccta
gi|13 : ttcaaaattcataacACTTT-AC-----CACATATTAT--AATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGAC--AC--TACATTTCTG--GTCTGTAATTTCGACAATGCATTCTT-------TA-------TAAATACTTAAATTGAC--A--ATTTTTA--TG--AACT--T----
gi|10 : acactTTTCTG--GCCTGTTATTTTGACCATACATTCTT-------TAAAAATGCTTAAA-------TTAACAGA--TTGTACATCTGTTGAATGTT----TA------T-GAA-T-C-TATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTGTTTAGACAAATCCTAGGTATTCCCA----Tg
gi|4 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatTTTAGGCA-----CATGTATTCCTA----TGGG--TGTG----AACTGTGCATCATTTT---TCGCAG-ACT--TGGCT-TTTATATT-CCTTCGA-GA-GGAA---TTTAATGCT-TGGCATTTCGTGAAATATAAATAC---TGATGCC---ATTAATGCCTATA---ATGATA---------CTTC-T------------AGATACATTAACG--ATA--CTTAG-TAC--GA-TAA-TGATTTTGT--CA-CTCAAATGGTTGTCAACA-TTT-T-TCCA-TGGTAA-------AC-TCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGA-AT-CACTAATCTC---TATTAACAAT-A-GTT----TAATT----GGACAA-AA-TATAG------AAC--AAAT-AAATGGTTTT--GATTTCGAT-TTGTTAA-TTTCTTTCAATTgtataccaattgag
gi|5 : aaattgacaaattgaaatatAA-GC-G--A---TATCATGCT-AGCCTTT-CGCCAAATTTATGGGCCAATGTCATCAATA------TTTC-AATCATGC-----------A-TC-T------------AGGTTCTTGTACACTATA---------ACCTATGTATATGAT--------A-TTAAGTTAGCAA---ATATTTATCATGC-----TGA--GGTTCAGTTCAACAAAACTT---CTTC---------ACCTGCATAACTTTACCTACA-----TTT---TACTATTGATAACGGTTT--TAAAAAGTTGTGCAA-AA-CATA------TAAC--AAAAGAGATGATCTT--GATGTTGATAggaat
gi|7 : tttgattcttttattgccacga-----------CTTT-T------------AAATAACTGGACG--ATATACTT-GACATTTAT--AT-TTCTTTTTTTTTGTCTCAAATGGTAG---TCA-ATA-TCTTTCCCAGTGAGGTCT--AGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTTACAT--TTCTG---TATTGTTAAT---CTTTTAATAA------GTCGAAAAA-TATAA-A---TGAC--AAAGTAAATGGTTTT--GAGTTCGCTATTGTT-A-GTTTtcgttactgttctatatttagatgggaatattct
gi|20 : aatgccttttgata---ACT-TTA-TTTATCCTAATGA--TCTCCAGCTCGTCAAAGCT-AT-----CAATTCTGGAGCTGCCTTTCTTGACTTACAccatcgtttggat
gi|16 : cttaatgtagattcttctgtttcCCTGGTCAATGCTAACGTTTCTAATTCTGAAGATAACTTCTTT----TACAA--GTCTC---TATTAATAATGG-TTTTA--TGA------GAATAAAAA-TATA------TGGCCTAAA--AGATGATTTT--GA
gi|15 : AAGCTGCCTTT-TTAACTTACAT--TTCTCAAATATAAATACTGT-TTTTT--TTA------ATA-AAGTTCTATAATATTATAGC--AAAAAAGATGAATTCAAGATTTCGATATTGCT-ACTTTTTTCTCATT
gi|17 : TTCTTGTCATGCAT--CTCTT---TATTAATAATGG-TTTTG--TAA------GGACAAAAA-TAC-ACA---TGAC--AAAAGAGATGGTTTT--A---TAAATATTGTT-A-ATTTTCCTCATT
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AAACGCATATCTGGTCTGTTATGTTGGTGGCCCATTCTTTACTCATGTTGAAATAAACAGACTGTGTCTATGATCTTGCCTAGAGGTTACTTAATCATTACCATTATTTTAAATAAAATATTCATCTATTCGATGATACTTAGTTTTAAATTAGAGAAATTGTAAATATTTTTATTGATAACAATTATGCATCACTTGTTGAATACTTCATAAACTATTGCTACAAAAGTTAATGCTGTACTTTTCGCCAAATACATAGGCTGCTGTCAATAACATTTTCGATTAAACTTC
Unaligned ( gi|9 ): GAGGATCAGAAGTTTATGAATGCCAGTCCATATATTTAAAAAATATATTTAATCGATTAGGTGTTATTTTGATTTGTCTTCCCATGGGTACTAATTGGGCATCACTTGTTACAGACTCATTGTTTATATTGCTACGAGTGGAAGTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTCAATATTATATCTAAATACCTAGGGACGA
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|14 ): ATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCACTAGTATTAAATATTTCATAAACGCATAATATACGACAGCAGGGGTGGTTTTCATTTAGATATTGTCCATTTTCCTCATTTGGAT
Unaligned ( gi|18 ): TTGTCGCATAATTTTGTAATATGCTACGAGAGAAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGCTGATGTCATCATTGTGCTTATTAATAC
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Unaligned ( gi|21 ): TAATGTCTCTATTAACAATGTTGATTTGAGGACAAACAATATGATAAACAAAAGGTGATTTCGATATTGTAAAGTTTCCTCATTTGGATGG
Unaligned ( gi|22 ): GATGCCTTTAATGATACTTTCAGATAACTGCTCGATACACTTTACCCATAATACTTTTTTCTTCACAATAGAAGTCAATTTTTATCCTA
Unaligned ( gi|23 ): TGTTACCGTGTATAGACGTAGTTCAATGGTATTCTGATGGGTACCAATTATGCACCATTTGTCGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1111 333333 22222 1111 11 2222222 33333333 1 444444444444444444444444444 11 222222222222222222 111 111111 4444444444444444444444444 22222 1111 11 11 11111 111111 11 111 3333333333333333333333333333333333333333333333333 111 111 2222222222 22 66666666666666666666666666666 33333333 11 3333333 11 111 111111111111111 22222222
lowQualScore : 3 0 0 7777 333333 1 66666 8 6 5 66 1 1 8 7777 22 1 1 1 11 0 8 8 1 6666666 55 1 22222222 0 8 777777777777777777777777777 2 11 666666666666666666 3 77 5 77 3 1 222 4 5 1 1 555555 5555555555555555555555555 1 88888 0 7777 11 6 0 5 6 55 88888 999999 33 3 0 1 000 0 9999999999999999999999999999999999999999999999999 8 111 000 6666666666 1 2 1 1 4 1 5 66 22 55555555555555555555555555555 1 22 1 99 22222222 6 66 8 55 5555555 3 6 6 1 33 8 55 1 44 000 6 0 777 66 0 1 1 777 333 666666666666666 1 4 4 77777777 66 66
lowQualScore : . . . .... ...... . ..... . . . .. . . . .... .. . . . .. . . . . ....... .. . ........ . . ........................... . .. .................. . .. . .. . . ... . . . . ...... ......................... . ..... . .... .. . . . . .. ..... ...... .. . . . ... . ................................................. . ... ... .......... . . . . . . . .. .. ............................. . .. . .. ........ . .. . .. ....... . . . . .. . .. . .. ... . . ... .. . . . ... ... ............... . . . ........ .. ..
lowQualScore : 0 8 6 0000 000000 0 00000 0 0 6 22 0 0 0 0000 00 0 0 0 00 8 2 0 0 0000000 44 0 22222222 6 0 666666666666666666666666666 2 00 888888888888888888 5 99 7 99 9 7 333 3 9 0 0 555555 6666666666666666666666666 0 88888 8 0000 00 6 8 0 0 00 66666 222222 00 3 7 0 555 7 7777777777777777777777777777777777777777777777777 0 777 333 3333333333 0 7 0 0 3 0 0 33 22 44444444444444444444444444444 7 55 0 22 22222222 4 88 0 66 8888888 2 2 6 0 88 0 44 4 22 333 0 1 888 11 1 0 0 888 000 000000000000000 0 4 4 88888888 11 00
consensus : NAAGGCATANGACGATTC----CGGTATAAA-GC-GTTTTGGATCTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT-------GTNNACGTTGTC-----CACATATT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--GT--ATG--------TG--GANT---------GTTTNTGAATCA-N-TACCATTTCTTTT----AAATAACA--TATTCATTCGAATCGCTGGTACT---GTGTTT------AGACAAATCGTAAGTATTCCTATGGGTACCAATT-----------TT--CG--GACCA----TTG-----T------------TC-TA---TATTGCCTACGA--GNG--A--TTTNATGCTNGNCNTTCCGCCAAATNCACAGGCTGATGTCATCT-AATGCT----------C--TT----C--T-----AGATACTTGGACG--ATA--CTT-G-TACCTAN-TAT-TGATTTTTTTC-G-CTCAAATGGTAGNCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCT---TT--CTTGACTTACATNTCTC---TATTAATAATGGTTTTN--T-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGTATAAGATAATTC----CGGTATAAAGGC-GTNTTGGATCTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTNNGTACNAAACAGTANCAAGNTC--CTTCGGTAAGCACGTA-CGANTT-------GTNTACNTT-TC-----CACATATT-TA-CATTNAAGA--GAAGCTTACGTG--ACTAATTCAAA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTAAAAATGCTAAATTTAACAGANTNT--GT--ATG--------TG--GANT---------GTTTNTGAAT-A-N-TATCATTTCTTTT----AAATAACA--TATACATTCGAATCGCTGGTACT---GCGTTT------AGACAAATCCTANGTATTCCCATGNATNTNAACT-----------TT--CG--GACC-----TTG-----T------------TC-TA---TATTGCCTNCGA--GCG--A--TTTNATGCTAGNCNTTCCGCCAAATNCACGGGCTGACGTCATCT-AATGCT----------C--TT----C--T-----AGATACTTGGACG--ATA--CTT-G-TACCTAN-TAT-TGATTTTTTTC-G-CTCAAATGGTAGACATTATNTNCCC-TAGTGATCTCCAGCTCGACAAAGCTAACGTTTCTAATTCTGAAGCTGCCT---TT--CTTGACNTACATNTCTC---TATTAATAATGGTTTTT--T-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTTCTCATT
gi|1 : AAGACATACGACGAGTC----TAGTATAAA--T-ATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT-------GTACACGTT-TC-----CGCAAATT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--AT--ATG--------TG--GACT-----------TTGAGAAC-A-C-TATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTGTTT------AGACAACTTGCAAGTATTCCTATAAGTTTTAATT-----------TT--GG--GACTA----TTG-----T------------TC-CA---TACTGTCTACAA--GCG--A--TTAAATGCTGGTCGTTC-GCCATATTTACAGGCTGTTATCACCTGAATGC-----------C--TT----C--T-----AGATACTTGGACG--ATAG-CTT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAAAACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCT---TT--CTTGACATACACATCTT---TATCAATGATGAATTTC--T-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--AC--ATC--------TGTTGAAT---------GTTTATGAAT-C-TATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTGTTT------AGACAAATCCTAGGTATTCCCATGTATACCAATT-----------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACGTC----TGGTATAAA--T-TTGTTG----TGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTT-------gag
gi|13 : tgccgcctttaaagaacagatgaaattgtattgtgatTACTTT-AC-----CACATATTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATTTT---T--ATG--------tcgtttcaaagtttaacactactttaccta
gi|14 : acacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCA--T-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCT---TT---TTAACTTACATTTCTCAAATATAAATACTGTTTTTT--TTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACT---T---CTT---TTACAAGTCTC---TATTAATAATGGTTTTA--T-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggt---TT--CTTGTCATGCATCTCTT---TATTAATAATGGTTTTG--T-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--GAG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGCTGATGTCATC--ATTGTG----------C--TT----A--T-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAATAGAATTC----TGATATAAAAGT-GTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTTTTCAACGATGTTCCTT-TCTTTATCACACATT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTCGAG--ATATG-------------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTT-AAAATGCTTAATTTAACAGATTGTCCGT--CTG--------TT--GAAT---------GTTTCTGAAT-ATA-TACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTGTTT------AGACAAGTCCTAAGTATTCCCATGTATACCAATT-------------------GA---------G-----C------------AC-CA---T-TTGTC-GCGAT-GCT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCAGGCAGGTGTCGTCT-ATTCCT----------CCATTATTAC--TACAAGAGATA--TGGACG--GTA--------TACCTAA-TAT-C--TTTTTTAC-G-CTCAAATGGT
gi|20 : aaagaacatattaaactatatcttttttACTTTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCT---TT--CTTGACTTACA
gi|21 : cttaatgtagattcttctgtttcATGTCTC---TATTAACAATGTTGATT--T-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|3 : taAATTCATAACAGTGTAAAGGC-ATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG-------ATCAACGTTGTA-----TAC-TATT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--GT--ATG--------TA--AACTTATCATGTCGTTTATGAATCA-A-AATCATTTCTTTA----AAATATTA--TAATCATTCGA-TC-------------CGTTT------GGACAAACTGTATGTATTCATACGGGTA-AAACT-----------CTTACA--GAAC-----TTG-----TCTCAGATTTGTCTC-TA---TATTGC-TACGA--GTAGAA--TGTTATGCAAGACATTCCGCCAAATTCACCGACTGATGTCATC--AATGCT-------------TT----CAAT-----A-ATACTTCTA-G--ATA--CTT-G-tggatgg
gi|4 : ttcaaTTT------AGGCACAT-----GTATTCCTATGGGTGTGAACTGTGCATCATTTTT--CGCAGACT-----TGGC----T------------TT-TA---TATT-CCTTCGA--GAGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAATACTGATGCCAT-T-AATGCCTATAATGATAC--TT----C--T-----AGATACATTAACG--ATA--CTTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCAAATGGTTGTCAACATTTTTCCATGGTAA------ACTCAACAAATATAACGTTTCTAATTCCGACGCTGTCT---TT--CTTGAATCACTAATCTC---TATTAACAATAG---TT--T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat---TATTGCC-ACGAAAGCG--A--TATCATGCTAGCCTTTC-GCCAAATTTATGGGCCAATGTCATC--AATATTTCAATCATG-C--AT----C--T-----AGGTTCTTGTACACTATA---------ACCTATGTATATGATATT----------AAGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCAT---AA--CTTTACCTACATTTTAC---TATTGATAACGGTTTTA--A-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTATGATCTTGCCTA--GAG----------GTTACTTAATCA-T-TACCATT-ATTTT----AAATAAAA--TATTCAT-CTATTCGATGATACT---TAGTTTTAAATTAGAGAAATTGTAAATATTTTTATTGATAACAATT-----------AT---G--CATCACTTGTTGAATACT------------TCATAAACTATTGC-TACAA--AAG------TTAATGCTGTACTTTTCGCCAAATACATAGGCTGCTGTCActatatttagatgggaatattct
gi|7 : ----------C--TT----T--T-----AAATAACTGGACG--ATATACTT-GACATTTA--TAT-TTCTTTTTTTTTGTCTCAAATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTT---TT--CTTGGCTTACATTTCTG---TATTGTTAAT--CTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aatgccttttgataAAAGCATGCGATTATTC----CGGTATAA---CTGTGTTG-ATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT-------GTCAACGTTGTA-----CAC-TATT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAGTtggat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAGGATCAGAAGTTTATGAATGCCAGTCCATATATTTAAAAAATATATTTAATCGATTAGGTGTTATTTTGATTTGTCTTCCCATGGGTACTAATTGGGCATCACTTGTTACAGACTCATTGTTTATATTGCTACGAGTGGAAGTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTCAATATTATATCTAAATACCTAGGGACGA
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Unaligned ( gi|22 ): GATGCCTTTAATGATACTTTCAGATAACTGCTCGATACACTTTACCCATAATACTTTTTTCTTCACAATAGAAGTCAATTTTTATCCTA
Unaligned ( gi|23 ): TGTTACCGTGTATAGACGTAGTTCAATGGTATTCTGATGGGTACCAATTATGCACCATTTGTCGT
Alignments
lowQualScore : 11 444444444444 1111 11 55555555555555555555555555555555555 11 11 222222222222 111 111111 4444444444444444444444444 1111 11 111 1111 222222222222 22222222222 8888888888888888888888888888888888888888888888888888888888 11 22222 1111111111 777777777777777777777777777777777 4444444444 11 111 33333 111 11111 11111 1111 22222222
lowQualScore : 1 33 6666 333333333333 44 8 6 5 66 1 1 8 7777 1 1 1 1 11 0 8 8 1 0 22 2 3 11111111111111111111111111111111111 66 11 0 11 6 6 666666666666 3 77 5 77 3 1 555 1 1 2 111111 0000000000000000000000000 1 99 1 1 4444 99 3 2 7 33 3 777 5 0000 333333333333 33333333333 0 8888888888888888888888888888888888888888888888888888888888 999 00 1 77777 1 1 1 2 55 1 66 777 8888888888 444444444444444444444444444444444 3 66 0 66 3333333333 3 44 555 3 22222 6 3 1 6 99 1 1 000 6 0 2 0 11111 1 777 1 2 11111 5555 1 4 4 77777777 66 66
lowQualScore : . .. .... ............ .. . . . .. . . . .... . . . . .. . . . . . .. . . ................................... .. .. . .. . . ............ . .. . .. . . ... . . . ...... ......................... . .. . . .... .. . . . .. . ... . .... ............ ........... . .......................................................... ... .. . ..... . . . . .. . .. ... .......... ................................. . .. . .. .......... . .. ... . ..... . . . . .. . . ... . . . . ..... . ... . . ..... .... . . . ........ .. ..
lowQualScore : 0 88 8888 444444444444 66 0 0 6 22 0 0 0 0000 4 4 0 0 00 8 2 0 0 2 00 5 2 00000000000000000000000000000000000 44 00 8 00 0 0 222222222222 5 99 7 99 9 7 666 0 0 5 333333 2222222222222222222222222 0 22 0 0 2222 22 5 5 8 33 0 999 0 6666 666666666666 88888888888 2 0000000000000000000000000000000000000000000000000000000000 444 66 0 00000 0 0 0 6 66 0 11 888 1111111111 888888888888888888888888888888888 2 11 2 99 7777777777 7 22 000 2 22222 7 7 0 7 88 4 4 333 0 1 0 1 11111 0 888 9 6 11111 6666 0 4 4 88888888 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTTGTCAACGTTGTNC-----------ACATATT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--GT--ATG--------TG--GANT---------GTTTATGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--GNG--A--TTTNATGCTNGNCNTTTCGCCAAATNCACA--GGC---TGATGTCA-----TCT-AATGCT----------C--T-T----------CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA-G-CGTTTTGGATCTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTTGTNNACGTTGTCC-----------ACATATT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--GT--ATG--------TG--GANT---------GTTTNTGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCGCTGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCTATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--GNG--A--TTTNATGCTNGNCNTTCCGCCAAATNCACA--GGC---TGATGTCA-----TCT-AATGCT----------C--T-T----------CT-----AGATACTT--GGACG--ATA--C--TT-G-TACCTAN-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGNCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA---TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATTGTACACGTT-TCC-----------GCAAATT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--AT--ATG--------TG--GACT-----------TTGAGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT------------TT-GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAA--GCG--A--TTAAATGCTGGTCGTTC-GCCATATTTACA--GGC---TGTTATCA-----CCTGAATGC-----------C--T-T----------CT-----AGATACTT--GGACG--ATAG-C--TT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--AC--ATC--------TGTTGAAT---------GTTTATGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT------------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA------TTTGT-TGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTgag
gi|12 : tgccgcctttaaagaacagatgaaattgtattgtgat-T-----TT--A-----CATTGCC-ACGA--GAG--AAATGTTATGATAGT---------AAACTTACATTGAC---TAAAGTCG-----T-T-AATGCT----------T--T-TGATAATGCATCT-----AGATACCG--TAACG--ATA--C--tcgtttcaaagtttaacactactttaccta
gi|13 : taggtacttgaaccaaatgtacgccacttgtagcaaatttgcaCC-----------ACATATTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--TT--ATG--------acaagagtaattttg
gi|14 : acactactttaATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--GAG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCA--GGC---TGATGTCA-----TC--ATTGTG----------C--T-T----------AT-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAAT--AGAATTCTGATATAAAAG-TGTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTTTTCAACGATGTTCCTTTCTTTATCACACATT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCGT--CTG--------TT--GAAT---------GTTTCTGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-GCT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCA--GGC---AGGTGTCG-----TCT-ATTCCT----------CCAT-TATTA------CTACAAGAGATA--T--GGACG--GTA----------TACCTAA-TAT-C--TTTTTTAC-G-CTCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCC------TTT-AATGATA---------C--T-T----------TC-----AGATAACT--GCTCG--ATA--CACTT---TACCCAT-AAT---ACTTTTTTC---TTCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT------------AT--G--CA-------C-CA---TT
gi|3 : CAGTGTAAA-GGCATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAGATCAACGTTGTAT-----------AC-TATT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--GT--ATG--------TA--AACTTATCATGTCGTTTATGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCGA-TC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC------------TTACA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTGC-TACGA--GTAGAA--TGTTATGCAAGACATTCCGCCAAATTCACC--GAC---TGATGTCA-----TC--AATGCTTTCAATAATAC--T-T----------CT-----AGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT------------TT-CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGA--GAGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAA--TAC---TGATGCCA-----T-T-AATGCCTATAATGATAC--T-T----------CT-----AGATACAT--TAACG--ATA--C--TTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAGCG--A--TATCATGCTAGCCTTTC-GCCAAATTTATG--GGC---CAATGTCA-----TC--AATATTTCAATCATG-C--A-T----------CT-----AGGTTCTT--GTACACTATA-----------ACCTATGTATATGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTATGATCTTGCCTA--GAG----------GTTACTTAAT--CATTACCATT-ATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT------------AT--G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAA--AAG------TTAATGCTGTACTTTTCGCCAAATACATA--GGC---TGCTGTCA-----tatatttagatgggaatattct
gi|7 : ATGCCT-----TTT-GATACT----------T--T-T-----------------AAATAACT--GGACG--ATATAC--TT-GACATTTA--TAT-TTCTTTTTTTTTGTCTCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aAAAGCATGCG--ATTATTCCGGTATAACTG-TGTT---GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTTGTCAACGTTGTAC-----------AC-TATT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTATGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTG-CTACGA--GTGGAA--GTTCATGTTTAGCCTTTCGTCTTATGCACA--GACACGTTTTGCCACTGCCTTC-AATATT----------A--TAT----------CT-----AAATACCTAGGGACG--Agtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Alignments
lowQualScore : 11 333333333333 1111 11 22222 444444444444444444444444444444444444 11 11 222222222222 111 11111 33333333333333333333333 1111 22 111 1111 222222222222 22222222222 9999999999999999999999999999999999999999999999999999999999 1 222222222222 111111111 6666666666666666666666666666 4444444444 111 22222 111 11111 11111 1111 22222222
lowQualScore : 1 33 6666 777777777777 22 8 6 5 66 1 1 8 7777 1 1 1 1 11 0 8 8 1 00000 5 1 555555555555555555555555555555555555 66 11 0 11 6 6 666666666666 3 77 5 77 3 1 555 1 1 2 77777 99 44444444444444444444444 1 99 1 1 4444 99 3 2 99 3 777 5 0000 333333333333 1 33333333333 0 5555555555555555555555555555555555555555555555555555555555 6 3 444444444444 1 1 1 5 1 888 0 777777777 7777777777777777777777777777 33 66 77 9999999999 3 6 555 3 55555 6 3 6 99 1 1 000 6 0 2 0 11111 1 777 1 2 11111 5555 1 4 4 77777777 66 66
lowQualScore : . .. .... ............ .. . . . .. . . . .... . . . . .. . . . . ..... . . .................................... .. .. . .. . . ............ . .. . .. . . ... . . . ..... .. ....................... . .. . . .... .. . . .. . ... . .... ............ . ........... . .......................................................... . . ............ . . . . . ... . ......... ............................ .. .. .. .......... . . ... . ..... . . . .. . . ... . . . . ..... . ... . . ..... .... . . . ........ .. ..
lowQualScore : 0 88 8888 666666666666 44 0 0 6 22 0 0 0 0000 4 4 0 0 00 8 2 0 0 22222 0 0 777777777777777777777777777777777777 44 00 8 00 0 0 222222222222 5 99 7 99 9 7 666 0 0 5 88888 22 22222222222222222222222 5 22 0 0 2222 22 5 5 55 0 999 0 6666 666666666666 1 88888888888 2 8888888888888888888888888888888888888888888888888888888888 0 2 666666666666 0 0 0 9 0 888 1 000000000 9999999999999999999999999999 44 99 99 7777777777 7 7 000 2 55555 7 7 7 88 4 4 333 0 1 0 1 11111 0 888 9 6 11111 6666 0 4 4 88888888 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGTAC-----------ACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG--------TNGANT---------GTTTATGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCNTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGTNC-----------ACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG--------TGGANT---------GTTTATGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGNCNTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA---TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT--G--TACACGTT-TCC-----------GCAAA-TT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--A--TA--TG--------TGGACT-----------TTGAGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT---------TT----GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAA--G--CG--A--TTAAATGCTGGTCGTT-CGCCATATTTACAGGC---TGTTATCA-----CCTGAATGC-----------C--T-T----CT-----AGATACTT--GGACG--ATAG-C--TT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--A--CATCTG--------TTGAAT---------GTTTATGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT---------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA------TTTGT-TGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTTCGTTTCAAAGTTTAAC-----------AC-TACTT-TA-Cgag
gi|13 : tgccgcctttaaagaacagatgaaattgtattgtgatC-----------ACATA-TTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--T--TA--TG--------cta
gi|14 : acactactttacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--G--AG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGC---TGATGTCA-----TC--ATTGTG----------C--T-T----AT-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAAT--AGAATTCTGATATAAAAG-TGTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTT--T--TCAACGATGTTCCTTTCTTTATCACACA-TT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCG--TC--TG--------TTGAAT---------GTTTCTGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-G--CT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCAGGC---AGGTGTCG-----TCT-ATTCCT----------CCAT-TATTACTACAAGAGATA--T--GGACG--GTA----------TACCTAA-TAT-C--TTTTTTAC-G-CTCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCC------TTT-AATGATA---------C--T-T----TC-----AGATAACT--GCTCG--ATA--CACTT---TACCCAT-AAT---ACTTTTTTC---TTCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : -TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT---------AT-----G--CA-------C-CA---TT
gi|3 : CAGTGTAAA-GGCATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG--A--TCAACGTTGTAT-----------AC-TA-TT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--G--TA--TG--------TAAACTTATCATGTCGTTTATGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCG-ATC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC---------TTA---CA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTG-CTACGA--GTAGA--A--TGTTATGCAAGACATTCCGCCAAATTCACCGAC---TGATGTCA-----TC--AATGCTTTCAATAATAC--T-T----CT-----AGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT---------TT----CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGA--G--AGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAATAC---TGATGCCA-----T-T-AATGCCTATAATGATAC--T-T----CT-----AGATACAT--TAACG--ATA--C--TTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAG--CG--A--TATCATGCTAGCC-TTTCGCCAAATTTATGGGC---CAATGTCA-----TC--AATATTTCAATCATG-C--A-T----CT-----AGGTTCTT--GTACACTATA-----------ACCTATGTATATGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTA--TGATCTTGCCTAGAG----------GTTACTTAAT--CATTACCA-TTATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT---------AT-----G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAA--A--AG------TTAATGCTGTACTTTTCGCCAAATACATAGGC---TGCTGTCA-----tatatttagatgggaatattct
gi|7 : ATGCCT-----TTT-GATACT----------T--T-T-----------AAATAACT--GGACG--ATATAC--TT-GACATTTAT-ATT-TCTTTTTTTTT-GTCTCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aAAAGCATGCG--ATTATTCCGGTATAACTG-TGTT---GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT--G--TCAACGTTGTAC-----------AC-TA-TT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTATGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTG-CTACGA--G--TGGAA--GTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTC-AATATT----------A--TAT----CT-----AAATACCTAGGGACG--Agtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Alignments
lowQualScore : 11 333333333333 1111 11 22222 4444444444444444444444444444444444444444 11 11 222222222222 111 11111 111 333333333 1111 22 111 1111 222222222222 22222222222 9999999999999999999999999999999999999999999999999999999999 1 222222222222 111111111 6666666666666666666666666666 4444444444 111 22222 111 11111 11111 1111 22222222
lowQualScore : 1 33 6666 777777777777 22 8 6 5 66 1 1 8 7777 1 1 1 1 11 0 8 8 1 00000 5555555555555555555555555555555555555555 66 11 0 11 6 6 666666666666 3 77 5 77 3 1 555 1 1 2 77777 99 111 1 1 888888888 6 99 1 1 4444 99 3 2 99 3 777 5 0000 333333333333 1 33333333333 0 5555555555555555555555555555555555555555555555555555555555 6 3 444444444444 1 1 5 1 1 888 0 777777777 7777777777777777777777777777 33 66 77 9999999999 3 6 555 3 55555 6 3 6 99 1 1 000 6 0 2 0 11111 1 777 1 2 11111 5555 1 4 4 77777777 66 66
lowQualScore : . .. .... ............ .. . . . .. . . . .... . . . . .. . . . . ..... ........................................ .. .. . .. . . ............ . .. . .. . . ... . . . ..... .. ... . . ......... . .. . . .... .. . . .. . ... . .... ............ . ........... . .......................................................... . . ............ . . . . . ... . ......... ............................ .. .. .. .......... . . ... . ..... . . . .. . . ... . . . . ..... . ... . . ..... .... . . . ........ .. ..
lowQualScore : 0 88 8888 666666666666 44 0 0 6 22 0 0 0 0000 4 4 0 0 00 8 2 0 0 22222 4444444444444444444444444444444444444444 44 00 8 00 0 0 222222222222 5 99 7 99 9 7 666 0 0 5 88888 22 777 0 0 333333333 7 22 0 0 2222 22 5 5 55 0 999 0 6666 666666666666 1 88888888888 2 0000000000000000000000000000000000000000000000000000000000 0 2 666666666666 0 0 4 0 0 888 1 000000000 9999999999999999999999999999 44 99 99 7777777777 7 7 000 2 55555 7 7 7 88 4 4 333 0 1 0 1 11111 0 888 9 6 11111 6666 0 4 4 88888888 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TNGANT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCNTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA---TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT--G--TACACGTT-T----------C-CGCAAA-TT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--A--TA--TG---TGGACT-----------TTG-AGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT------------TT-GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAA--G--CG--A--TTAAATGCTGGTCGTT-CGCCATATTTACAGGC---TGTTATCA-----CCTGAATGC-----------C--T-T----CT-----AGATACTT--GGACG--ATAG-C--TT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--A--CATCTG---TTGAAT---------GTTTA-TGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT------------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA------TTTGT-TGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTTCGTTTCAAAGTTTA----------A-CAC-TACTT-TA-Cgag
gi|13 : tgccgcctttaaagaacagatgaaattgtattgtgat-CACATA-TTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--T--TA--TG---cta
gi|14 : acactactttacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--G--AG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGC---TGATGTCA-----TC--ATTGTG----------C--T-T----AT-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAAT--AGAATTCTGATATAAAAG-TGTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTT--T--TCAACGATGTTCCTTTCTTTATCACACA-TT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCG--TC--TG---TTGAAT---------GTTTC-TGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-G--CT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCAGGC---AGGTGTCG-----TCT-ATTCCT----------CCAT-TATTACTACAAGAGATA--T--GGACG--GTA----------TACCTAA-TAT-C--TTTTTTAC-G-CTCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCC------TTT-AATGATA---------C--T-T----TC-----AGATAACT--GCTCG--ATA--CACTT---TACCCAT-AAT---ACTTTTTTC---TTCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : -TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT------------AT--G--CA-------C-CA---TT
gi|3 : CAGTGTAAA-GGCATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG--A--TCAACGTTGT----------A-TAC-TA-TT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--G--TA--TG---TAAACTTATCATGTCGTTTA-TGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCG-ATC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC------------TTACA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTG-CTACGA--GTAGA--A--TGTTATGCAAGACATTCCGCCAAATTCACCGAC---TGATGTCA-----TC--AATGCTTTCAATAATAC--T-T----CT-----AGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT------------TT-CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGA--G--AGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAATAC---TGATGCCA-----T-T-AATGCCTATAATGATAC--T-T----CT-----AGATACAT--TAACG--ATA--C--TTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAG--CG--A--TATCATGCTAG-CCTTTCGCCAAATTTATGGGC---CAATGTCA-----TC--AATATTTCAATCATG-C--A-T----CT-----AGGTTCTT--GTACACTATA-----------ACCTATGTATATGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTA--TGATCTTGCCTAGA------GGTTACTTAAT--CATTACCA-TTATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT------------AT--G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAA--A--AG------TTAATGCTGTACTTTTCGCCAAATACATAGGC---TGCTGTCA-----tatatttagatgggaatattct
gi|7 : ATGCCT-----TTT-GATACT----------T--T-T-----------AAATAACT--GGACG--ATATAC--TT-GACATTTAT-ATT-TCTTTTTTTTT-GTCTCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aAAAGCATGCG--ATTATTCCGGTATAACTG-TGTT---GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT--G--TCAACGTTGT----------A-CAC-TA-TT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTA-TGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTG-CTACGA--G--TGGAA--GTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTC-AATATT----------A--TAT----CT-----AAATACCTAGGGACG--Agtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Alignments
lowQualScore : 11 333333333333 1111 11 22222 4444444444444444444444444444444444444444 11 11 222222222222 111 11111 111 333333333 1111 22 111 1111 222222222222 22222222222 9999999999999999999999999999999999999999999999999999999999 1 222222222222 111111111 6666666666666666666666666666 4444444444 111 22222 111 11111 11111 1111 22222222
lowQualScore : 1 33 6666 777777777777 22 8 6 5 66 1 1 8 7777 1 1 1 1 11 0 8 8 1 00000 5555555555555555555555555555555555555555 66 11 0 11 6 6 666666666666 3 77 5 77 3 1 555 1 1 2 77777 99 111 1 888888888 6 99 1 1 4444 99 3 2 99 3 777 5 0000 333333333333 1 33333333333 0 5555555555555555555555555555555555555555555555555555555555 6 3 444444444444 1 5 2 1 888 0 777777777 7777777777777777777777777777 33 66 77 9999999999 3 6 555 3 55555 6 3 6 99 1 1 000 6 0 2 0 11111 1 777 1 2 11111 5555 1 4 4 77777777 66 66
lowQualScore : . .. .... ............ .. . . . .. . . . .... . . . . .. . . . . ..... ........................................ .. .. . .. . . ............ . .. . .. . . ... . . . ..... .. ... . ......... . .. . . .... .. . . .. . ... . .... ............ . ........... . .......................................................... . . ............ . . . . ... . ......... ............................ .. .. .. .......... . . ... . ..... . . . .. . . ... . . . . ..... . ... . . ..... .... . . . ........ .. ..
lowQualScore : 0 88 8888 666666666666 44 0 0 6 22 0 0 0 0000 4 4 0 0 00 8 2 0 0 22222 4444444444444444444444444444444444444444 44 00 8 00 0 0 222222222222 5 99 7 99 9 7 666 0 0 5 88888 22 777 0 333333333 7 22 0 0 2222 22 5 5 55 0 999 0 6666 666666666666 1 88888888888 2 8888888888888888888888888888888888888888888888888888888888 0 2 666666666666 0 9 2 0 888 1 000000000 9999999999999999999999999999 44 99 99 7777777777 7 7 000 2 55555 7 7 7 88 4 4 333 0 1 0 1 11111 0 888 9 6 11111 6666 0 4 4 88888888 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA---TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT--G--TACACGTT-T----------C-CGCAAA-TT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--A--TA--TG---TGGACT-----------TTG-AGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT---------TT----GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAA--G--CG--A--TTAAATGCT-GGTCGTTCGCCATATTTACAGGC---TGTTATCA-----CCTGAATGC-----------C--T-T----CT-----AGATACTT--GGACG--ATAG-C--TT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--A--CATCTG---TTGAAT---------GTTTA-TGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT---------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA------TTTGT-TGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTTCGTTTCAAAGTTTA----------A-CAC-TACTT-TA-Cgag
gi|13 : tgccgcctttaaagaacagatgaaattgtattgtgat-CACATA-TTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--T--TA--TG---cta
gi|14 : acactactttacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--G--AG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGC---TGATGTCA-----TC--ATTGTG----------C--T-T----AT-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAAT--AGAATTCTGATATAAAAG-TGTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTT--T--TCAACGATGTTCCTTTCTTTATCACACA-TT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCG--TC--TG---TTGAAT---------GTTTC-TGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-G--CT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCAGGC---AGGTGTCG-----TCT-ATTCCT----------CCAT-TATTACTACAAGAGATA--T--GGACG--GTA----------TACCTAA-TAT-C--TTTTTTAC-G-CTCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCC------TTT-AATGATA---------C--T-T----TC-----AGATAACT--GCTCG--ATA--CACTT---TACCCAT-AAT---ACTTTTTTC---TTCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : -TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT---------AT-----G--CA-------C-CA---TT
gi|3 : CAGTGTAAA-GGCATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG--A--TCAACGTTGT----------A-TAC-TA-TT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--G--TA--TG---TAAACTTATCATGTCGTTTA-TGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCG-ATC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC---------TTA---CA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTG-CTACGA--GTAGA--A--TGTTATGCAAGACATTCCGCCAAATTCACCGAC---TGATGTCA-----TC--AATGCTTTCAATAATAC--T-T----CT-----AGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT---------TT----CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGA--G--AGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAATAC---TGATGCCA-----T-T-AATGCCTATAATGATAC--T-T----CT-----AGATACAT--TAACG--ATA--C--TTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAG--CG--A--TATCATGCTAG-CCTTTCGCCAAATTTATGGGC---CAATGTCA-----TC--AATATTTCAATCATG-C--A-T----CT-----AGGTTCTT--GTACACTATA-----------ACCTATGTATATGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTA--TGATCTTGCCTAGA------GGTTACTTAAT--CATTACCA-TTATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT---------AT-----G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAA--A--AG------TTAATGCTGTACTTTTCGCCAAATACATAGGC---TGCTGTCA-----tatatttagatgggaatattct
gi|7 : ATGCCT-----TTT-GATACT----------T--T-T-----------AAATAACT--GGACG--ATATAC--TT-GACATTTAT-ATT-TCTTTTTTTTT-GTCTCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aAAAGCATGCG--ATTATTCCGGTATAACTG-TGTT---GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT--G--TCAACGTTGT----------A-CAC-TA-TT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTA-TGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTG-CTACGA--G--TGGAA--GTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTC-AATATT----------A--TAT----CT-----AAATACCTAGGGACG--Agtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Alignments
lowQualScore : 11 333333333333 1111 11 22222 4444444444444444444444444444444444444444 11 11 222222222222 111 11111 111 333333333 1111 22 111 1111 222222222222 22222222222 9999999999999999999999999999999999999999999999999999999999 1 222222222222 111111111 6666666666666666666666666666 4444444444 111 22222 111 11111 11111 1111 22222222
lowQualScore : 1 33 6666 777777777777 22 8 6 5 66 1 1 8 7777 1 1 1 1 11 0 8 8 1 00000 5555555555555555555555555555555555555555 66 11 0 11 6 6 666666666666 3 77 5 77 3 1 555 1 1 2 77777 99 111 1 888888888 6 99 1 1 4444 99 3 2 99 3 777 5 0000 333333333333 1 33333333333 0 5555555555555555555555555555555555555555555555555555555555 6 3 444444444444 1 5 2 1 888 0 777777777 7777777777777777777777777777 33 66 77 9999999999 3 6 555 3 55555 6 3 6 99 1 1 000 6 0 2 0 11111 1 777 1 2 11111 5555 1 4 4 77777777 66 66
lowQualScore : . .. .... ............ .. . . . .. . . . .... . . . . .. . . . . ..... ........................................ .. .. . .. . . ............ . .. . .. . . ... . . . ..... .. ... . ......... . .. . . .... .. . . .. . ... . .... ............ . ........... . .......................................................... . . ............ . . . . ... . ......... ............................ .. .. .. .......... . . ... . ..... . . . .. . . ... . . . . ..... . ... . . ..... .... . . . ........ .. ..
lowQualScore : 0 88 8888 666666666666 44 0 0 6 22 0 0 0 0000 4 4 0 0 00 8 2 0 0 22222 4444444444444444444444444444444444444444 44 00 8 00 0 0 222222222222 5 99 7 99 9 7 666 0 0 5 88888 22 777 0 333333333 7 22 0 0 2222 22 5 5 55 0 999 0 6666 666666666666 1 88888888888 2 8888888888888888888888888888888888888888888888888888888888 0 2 666666666666 0 9 2 0 888 1 000000000 9999999999999999999999999999 44 99 99 7777777777 7 7 000 2 55555 7 7 7 88 4 4 333 0 1 0 1 11111 0 888 9 6 11111 6666 0 4 4 88888888 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA---TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT--G--TACACGTT-T----------C-CGCAAA-TT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGCCAGAGACAAAC--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--A--TA--TG---TGGACT-----------TTG-AGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AATT--TAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT---------TT----GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAA--G--CG--A--TTAAATGCT-GGTCGTTCGCCATATTTACAGGC---TGTTATCA-----CCTGAATGC-----------C--T-T----CT-----AGATACTT--GGACG--ATAG-C--TT-G-TACTTAT-TAT-TGATTTTTTTCCA-CTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAG-A-GTATAATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--A--CATCTG---TTGAAT---------GTTTA-TGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT---------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA------TTTGT-TGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTTCGTTTCAAAGTTTA----------A-CAC-TACTT-TA-Cgag
gi|13 : tgccgcctttaaagaacagatgaaattgtattgtgat-CACATA-TTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGCC--AGA-CA-C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--T--TA--TG---cta
gi|14 : acactactttacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATA-A--TATA------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTAT-A-ATATTA-----TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAA-A-ATAT---A---TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAA-A-ATACAC-A---TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGA--G--AG--AAGTTTTATGTTTAGCCTTTCGTCAAATACGCAGGC---TGATGTCA-----TC--ATTGTG----------C--T-T----AT-----TAATAC
gi|2 : ttgtcgcataattttgtaatatgAAGATATAAT--AGAATTCTGATATAAAAG-TGTTTTG-ATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTT--T--TCAACGATGTTCCTTTCTTTATCACACA-TT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCG--TC--TG---TTGAAT---------GTTTC-TGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-G--CT--A--TTTTACGCTAGACCTTTCATCAAGTGCGCAGGC---AGGTGTCG-----TCT-ATTCCT----------CCAT-TATTACTACAAGAGATA--T--GGACG--GTA----------TACCTAA-TAT-C--TTTTTTAC-G-CTCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA-ATATGA-T---AAACAAAAGG--------T--GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCC------TTT-AATGATA---------C--T-T----TC-----AGATAACT--GCTCG--ATA--CACTT---TACCCAT-AAT---ACTTTTTTC---TTCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : -TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT---------AT-----G--CA-------C-CA---TT
gi|3 : CAGTGTAAA-GGCATTCTAG-TCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG--A--TCAACGTTGT----------A-TAC-TA-TT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATA-AAACATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--G--TA--TG---TAAACTTATCATGTCGTTTA-TGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCG-ATC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC---------TTA---CA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTG-CTACGA--GTAGA--A--TGTTATGCAAGACATTCCGCCAAATTCACCGAC---TGATGTCA-----TC--AATGCTTTCAATAATAC--T-T----CT-----AGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT---------TT----CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGA--G--AGGAA--TTTAATGCTTGGCATTTCGTGAAATATAAATAC---TGATGCCA-----T-T-AATGCCTATAATGATAC--T-T----CT-----AGATACAT--TAACG--ATA--C--TTAG-TAC--GA-TAA-TGATTTTGT-C-A-CTCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AA-A-ATATAG-A-----AC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAG--CG--A--TATCATGCTAG-CCTTTCGCCAAATTTATGGGC---CAATGTCA-----TC--AATATTTCAATCATG-C--A-T----CT-----AGGTTCTT--GTACACTATA-----------ACCTATGTATATGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAA-ACATATAA--------CAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattcttt-AAACG-CATAT--CTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTA--TGATCTTGCCTAGA------GGTTACTTAAT--CATTACCA-TTATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT---------AT-----G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAA--A--AG------TTAATGCTGTACTTTTCGCCAAATACATAGGC---TGCTGTCA-----tatatttagatgggaatattct
gi|7 : ATGCCT-----TTT-GATACT----------T--T-T-----------AAATAACT--GGACG--ATATAC--TT-GACATTTAT-ATT-TCTTTTTTTTT-GTCTCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATGTT-CAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAA-A-ATATAA-A---TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : aAAAGCATGCG--ATTATTCCGGTATAACTG-TGTT---GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT--G--TCAACGTTGT----------A-CAC-TA-TT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACG-TTACCGCAGA-AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTA-TGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTG-CTACGA--G--TGGAA--GTTCATGTTTAGCCTTTCGTCTTATGCACAGACACGTTTTGCCACTGCCTTC-AATATT----------A--TAT----CT-----AAATACCTAGGGACG--Agtt
blockSeqs : A GT GAAT AGTGTTTTGA GT C T A AA T T T TTTT A C T T GA G G C TCGTT GTTCCTTTCTTTATCACACATTTGCTTAAAATCAA TA GT AG T T ACATAAAACAT A AA G GG A A AAA T A G CCG TC ATC T TATCATGTC C GC A C . . T G GC G TA A TAAA TAGTTCAATG C GTGAACTGTGC GGGCATCACTTGTTACAGACTCATTGTTTA T T GAGAAG T T G A ACG CTGCCTTC TCCATTATTACTACAAG AC AG CT TACTTGA C G ATG T TTGT C G A TC C T AAC T G GATAA T AAA A A TAATA AGTT C C C ACAT AA CT
blockSeqs : A . TTAT GGCATTCTAG TT . A A AA A A . . G T T C . T . T T GTATACTATTTTATCAAA TA . . A T GCAGAAATC T . . . A A TAA T A G GTC . . T AGA . . A C . . T G GC G . . . AATCCTAG C . TTACAGAACTTGTCTCAGATTTGTCTCTA C T GTAGAA T A A G . TCT TTTCAATAATACTTCT CT . . CACTT C . TG T ACG . A . GG T A AAC T T . T . T T . TT T . . GATA . A
blockSeqs : C . CG TGTGTTGA CT . A . . T A . . T T A A . A . A A GTACACTATTTACCATT T . . A T AGACAC A . . . A A AAA T T G A . . A . . . A C . . T G GA T . . . AGTCCTAA G . ATGCATCACTTGTTGAATACTTCATAAAC C T GAGGAA T A A T . TTT CTATAATGATACTTCT CA . . CTTAG C . TC G TC . G . GG C A AAT T T . G . G A . . A . . AAAT . A
blockSeqs : TTTGT CA . . . . . . . . G C T C . . . C G . . . . . . A . . . T A CTC A T G T . . T . . . T A . . A T GG A . . . AACTGTAT T . TTCGCAGACTTGGCTTTTA . T AAGCGA A T G A . TTT TTCAATCATGCATCT CT . . . T . C T CA . G . A . A A A T . C . G G . . G . . TAT . A
blockSeqs : . . . . A A TTT G A . G . . . . . G A . . . G . T . . . AATTGTAA T . GAGCACCA . T GTGGAA C A A T . TC TACTTTC AC . . . . . . . . . . . . . T . G . T T . . G . . AGA . A
blockSeqs : . . . . T AA A A . . . . CAT T . . . TGCTA A G G A . TC TATATCT CC . . A . A . G A . . G . . AC . C
blockSeqs : . . . C . . AAG C T . G . TT GCTTAT . . T . T . G A . . T . . AT . G
blockSeqs : TC TTTT . . T . T . . . T . . AA .
blockSeqCons : CGTTTTGN**** ** AGAAC******* NAA **** ** GN *** GAGGAA****** TC******* TTATATACTTCT**************** CTT******* NN*** AT******
originalCons : NAAGGCATANG--ACGATTCCGGTATAAA-G-TGTTTTGGATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCGCAGA-AAAC--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCG-TGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGA--G--NG--A--TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCA-----TCT-AATGCT----------C--T-T----CT-----AGATACCT--GGACG--ATA--C--TT-G-TACCTAT-TAT-TGATTTTTTTC-G-CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAA-A---TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
finalCons : NAAGGCATANG--ACGATTCCGGTATAAACGTTTTGN----TNTATAA-AATATCGAATG--GTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGCCAGAAC-------TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TA--TG---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCGNTGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT---------TT----CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGAGAGGAA------TTTNATGCTNGGCCTTTCGCCAAATNCACAGGC---TGATGTCATC-------AATGCTTATATACTTCT----------------AGATACCT--GGACG--ATACTT-------TACCTAT-TAT-TGATTTTTTNN---CTCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAA-A-ATATAT------GACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAGGTACTTGAACCAAATGTACGCCACTTGTAGCAAATTTGCATTTACATTGCCACGAGAGAAATGTTATGATAGTAAACTTACATTGACTAAAGTCGTTAATGCTTTTGATAATGCATCTAGATACCGTAACGATACACAAGAGTAATTTTG
Unaligned ( gi|19 ): AATTTGTTTTTTATATTGCTATTGGAAGGAGATCGCTAAATATACAGACTGGTTTTATCAATGCCGTCAGTAATACGTCTTGCAACCTGGGCAA
Alignments
lowQualScore : 11 3333 33 1111 11 22222 4444444444444444444444444444444444444444 11 11 5555555555555555555 111 11111 111 333333333 1111 111 1111 222222222222 22222222222 8888888888888888888888888888888888888888888888888888888888 11 111111111 5555555555555555555555555 3333333333333333333333333333 111111 11111 11111 11111 1111 111111111
lowQualScore : 1 33 6666 3333 8 1 22 8 6 5 33 1 1 8 7777 1 1 1 1 11 0 8 8 1 00000 5555555555555555555555555555555555555555 66 11 0 11 6 3333333333333333333 3 77 5 77 3 1 555 1 1 2 77777 99 111 1 888888888 6 99 1 1 4444 99 3 2 888 3 777 5 0000 333333333333 1 33333333333 0 8888888888888888888888888888888888888888888888888888888888 999 4 11 1 888 0 1 55 666666666 0 55 55 7777777777777777777777777 1 55 5555555555555555555555555555 3 999999 6 3 6 99 1 1 55555 6 0 2 0 11111 1 777 1 2 11111 5555 1 7777 444444444 0 66 66
lowQualScore : . .. .... .... . . .. . . . .. . . . .... . . . . .. . . . . ..... ........................................ .. .. . .. . ................... . .. . .. . . ... . . . ..... .. ... . ......... . .. . . .... .. . . ... . ... . .... ............ . ........... . .......................................................... ... . .. . ... . . .. ......... . .. .. ......................... . .. ............................ . ...... . . . .. . . ..... . . . . ..... . ... . . ..... .... . .... ......... . .. ..
lowQualScore : 0 88 8888 0000 0 0 44 0 0 6 00 0 0 0 0000 4 4 0 0 00 8 2 0 0 22222 4444444444444444444444444444444444444444 44 00 8 00 0 8888888888888888888 5 99 7 99 9 7 666 0 0 5 88888 22 777 0 333333333 7 22 0 0 2222 22 5 5 333 0 999 0 6666 666666666666 1 88888888888 2 0000000000000000000000000000000000000000000000000000000000 444 9 11 0 111 1 0 55 000000000 5 00 00 4444444444444444444444444 0 55 4444444444444444444444444444 2 333333 7 7 7 88 4 4 88888 0 1 0 1 11111 0 888 9 6 11111 6666 0 8888 333333333 9 11 00
consensus : NAAGGCATANG--ACGATTCCGGTATAAA-GTGTTTT-GATNTATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGC----CAGA-----A--C--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TAT--G---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCGNTGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGAGAGGAATTTNATGCTNGGCCTTTCGCCAAATNCACA--G---------GCTGATGTCATC--A--ATGC-----T-----T---AT--A----TACTTCTAGATACCT--GGACGATA--C--TT--TA-CCTAT-TAT-----TGATTTTTT-CNC--TCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAAAAT--AT--A------TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
Reference ( family-1788 ) : NAAGGCATANG--ACGATTCCGGTATAAA--CGTTTT-GNTNTATAA-AATATCGAATG--GTTTTAAAT-AA----ATTGCGTACCAAACAGTATCAAGNTT--CTTCGGTAAGCACGTA-CGANTT--G--TCAACGTTGT----------A-CACATA-TT-TA-CATTNAAGA--GAAGCTTACATG--ACTAATTCAGA--AAACGTTTGC----CAGA-----A--C--TATATTTCTGGCCTGTT--AT-TT--CGACCATGCATTCTTTANAAATGCTNAANTTGACAGATTGT--G--TAT--G---TTGACT---------GTTTA-TGAAT--CANTACCATTTCTTTT----AAATAACA--TATTCATTCGAATCGNTGGTACT---GTG-T----TTAGACAAATCGT--AA--GTATTCCCATGGGT-----------ACCAATT------------TT-CG--GA-------C-CA---TTG--T-T-----CT--A-----TATTGCCTACGAGAGGAATTTNATGCTNGGCCTTTCGCCAAATNCACA--G---------GCTGATGTCATC--A--ATGC-----T-----T---AT--A----TACTTCTAGATACCT--GGACGATA--C--TT--TA-CCTAT-TAT-----TGATTTTTT-NNC--TCA-AATGGTAGTCAATATTTATCC-TAGTGANNTCCAGCTCAACAAAGCTAACGTTTCTAATTCTGAAGCTGCCTTTCTTGACTT-----ACATNTCTC---TATTAATAATGGTTTTNT-----AA----GNACAAAAAT--AT--A------TGACAAAAGAGATGGTTTT--GATTTCGATATTGTTA-NTTTTCCTCATT
gi|1 : AAGACATACG--ACGAGTCTAGTATAAA--TATTTTAGATAAATAA-AATATCGAATGAAGTTTTAAAT-AA----ATTAAGAACAAGATAGTAGCAAGATT--CTTCGGTAAGCACGTA-CCAATT--G--TACACGTT-T----------C-CGCAAA-TT-T--CACTAAAGA--GAAGCTTACATA--ACTAATTCAGA--AAACGATTGC----CAGAGACAAA--C--TACATTTCTGACCTATT--AG-TG--CGACAGTGC-TTACTTA------CTAAATTTGACAGAATTT--A--TAT--G---TGGACT-----------TTG-AGAA---CACTATCATTTTTTTTTAAAAAATAACACGTGTTCATTC-AAT--TTAGTACTTTTGTG-T----TTAGACAACTTGC--AA--GTATTCCTATAAGT-----------TTTAATT------------TT-GG--GA-------C-TA---TTG--T-T-----CC--A-----TACTGTCTACAAGCG--ATTAAATGCT-GGTCGTTCGCCATATTTACA--G---------GCTGTTATCACCTGA--ATGC--------------------------CTTCTAGATACTT--GGACGATAG-C--TTG-TA-CTTAT-TAT-----TGATTTTTT-TCCACTAA-AACAGTAGACATTACATACAC-TAGTGATCTTCACCTCATTAAAGCTTATGTTTCCAATTCTGAAGCTGCCTTTCTTGACAT-----ACACATCTT---TATCAATGATGAATTTCT-----AA----GTACAAGAGT--AT--AATATTCTGACAAATGAGATGACTTT--GATTTCGATAATGATA-TTTTTTCTGATT
gi|10 : cTTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTAAAAATGCTTAAATTAACAGATTGT--A--CATCTG---TTGAAT---------GTTTA-TGAAT--CTATACTATTTCTTTT----AAATAACA--TATACATTTGAATCGCTGGTACT---GTG-T----TTAGACAAATCCT--AG--GTATTCCCATGTAT-----------ACCAATT------------a
gi|11 : caaatcatttctttcaaattatatttcttgaacgctaagagagatgatAAGGTATAAGGTACG--TCTGGTATAAA-----TTT-GTTGTGCAA-AAC-TCGA-TGAAGTTTTTAAT-AA----AGTACGTACCTAACAGTATCAAGTTC--CTTCGGTAAGCATGAA-CGACTTTCGTTTCAAAGTTTA----------A-CAC-TACTT-TA-Cgag
gi|12 : tgccgcctttaaagaacagatgaaattgtattgtgat-T-----TT--A-----CATTGCC-ACGAGAGAAATGTTATGATAG---------TAAACTTACATTG---------ACTAAAGTCGTT--A--ATGC-----T-----TTTGAT--AA---TGCATCTAGATACCG--TAACGATA--C--cta
gi|13 : taggtacttgaaccaaatgtacgccacttgtagcaaatttgca-CACATA-TTATA--ATTTACGA--GAGATTTACATG--ACTAATTCAGA--AATCGTTTGC----CAGAC----A--C--TACATTTCTGGTCTGTA--AT-TT--CGACAATGCATTCTTTATAAATACTTAAATTGACA-ATT-T--T--TAT--G---acaagagtaattttg
gi|14 : acactactttacATTCTGAGATTGCCTCGTTTGGTTTGATAAACATTTCAC---TAGTATTAAATATTTCAT-----AA----ACGCATAA-T--AT--A------CGACAGCAGGGGTGGTTTT--CATTTAGATATTGTCC-ATTTTCCTCATTaacttg
gi|15 : AAGCTGCCTTT-TTAACTT-----ACATTTCTCAAATATAAATACTGTTTTTTTTAATAAA----GTTCTATAAT--ATT-A------TAGCAAAAAAGATGAATTCAAGATTTCGATATTGCTACTTTTTTCTCATTtggat
gi|16 : CAATGCTAACGTTTCTAATTCTGAAGATAACTT-CTT---TT-----ACAAGTCTC---TATTAATAATGGTTTTAT-----GA----GAATAAAAAT--AT--A------TGGCCTAAAAGATGATTTT--GA
gi|17 : cctggtTTCTTGTCAT-----GCATCTCTT---TATTAATAATGGTTTTGT-----AA----GGACAAAAATACAC--A------TGACAAAAGAGATGGTTTT--A---TAAATATTGTTA-ATTTTCCTCATT
gi|18 : CTACGAGAGAAGTTTTATGTTTAGCCTTTCGTCAAATACGCA--G---------GCTGATGTCATC--ATTGTGC-----T-----T---ATTAA----TAC
gi|19 : ttgtcgcataattttgtaatatgTCGCTAAATATACA--G---------ACTGGTTTTATC--A--ATGC-----CGTCAGT---A---A----TACGTCTTGCAACCT--GGGCAA
gi|2 : aatttgttttttatattgctattggaaggagaAAGATATAAT--AGAATTCTGATATAAAAGTGTTTT-GATTTATAACAATTTCGGATGAAGTTATAAATTAATTTTATTGCATACTAAGCAGTATCTAGCTTGACT--GGTAAGCAATTA-CGTTTT--T--TCAACGATGTTCCTTTCTTTATCACACA-TT-TG-C--TTAAAATCAAAGCTTAAATC--ACTAATTC-GA--GA---TATG---------------------AT-TTTCTGGCCTGTT--AT-TT--TGACCATACATTCTTTA-AAATGCTTAATTTAACAGATTGTCCG--TCT--G---TTGAAT---------GTTTC-TGAAT--ATATACCATTTCTTTT----AAATAACA--TATACATTTGAACCGCTGGTACT---GTG-T----TTAGACAAGTCCT--AA--GTATTCCCATGTAT-----------ACCAATT-------------------GA-------G-CA----------------CC--A-----T-TTGTC-GCGAT-GCTATTTTACGCTAGACCTTTCATCAAGTGCGCA--G---------GCAGGTGTCGTC--T--ATTCCTCCAT-----T---AT-------TACTACAAGAGATAT--GGACGGTA---------TA-CCTAA-TAT-----C--TTTTTTACGC--TCA-AATGGT
gi|20 : aaagaacatattaaactatatcttttttTATTTATCC-TAATGATCTCCAGCTCGTCAAAGCTA-----TC-AATTCTGGAGCTGCCTTTCTTGACTT-----ACA
gi|21 : cttaatgtagattcttctgtttcacttATGTCTC---TATTAACAATGTTGATTT-----GA----GGACAAACA---AT--A------TGATAAACAAAA-GGT-----GATTTCGATATTGTAA-AGTTTCCTCATT
gi|22 : taGATGCCTTT--A--ATG--------------------A----TACTTTCAGATAACT--GCTCGATA--CACTT--TA-CCCAT-AAT-------ACTTTTT-TCT--TCACAATAGAAGTCAATTTTTATCC-TAtggatgg
gi|23 : TGTTACC---GTG-T----ATAGACG--TAGTTCAATGGTATTCTGATGGGT-----------ACCAATT------------AT--G--CA-------C-CA---TT
gi|3 : CAGTGTAAAGGCATTCT-AGTCTATAA-AATAT--------GTTTTAAAT-AA----ATCTTGTACTAAACAGAAACAACATT--ATTCGGTAAGCAC-TAGCGAAAG--A--TCAACGTTGT----------A-TAC-TA-TT-T--TATCAAA---------TT---CG--ATTAATTCATA--CAACGTTTGCAACATAAA-----A--CATTATTTTTCTGGCCTGTT--AT-TT--CAACTTTGCATTTTTTAAAAATGCTAAATTTAGCAGATTGT--G--TAT--G---TAAACTTATCATGTCGTTTA-TGAAT--CAAAATCATTTCTTTA----AAATATTA--TAATCATTCG-ATC-------------CG-T----TTGGACAAACTGT--AT--GTATTCATACGGGT-----------AAAACTC------------TTACA--GAACTTGTCT-CAGATTTG--TCT-----CT--A-----TATTG-CTACGAGTAGAATGTTATGCAAGACATTCCGCCAAATTCACC--G---------ACTGATGTCATC--A--ATGC-----T-----TTCAATA-A----TACTTCTAGATACTT--Gtgtcgt
gi|4 : ttcaaaattcataa-T----TTAGGCACAT---------GTATTCCTATGGGTGTGAACTGTGCATCATTT------------TT-CGCAGA-------C------TTGGCT-T-----TT--A-----TATT-CCTTCGAGAGGAATTTAATGCTTGGCATTTCGTGAAATATAAA--T---------ACTGATGCCATT--A--ATGC-----C-----T---AT--AATGATACTTCTAGATACAT--TAACGATA--C--TTAGTA-C--GA-TAA-----TGATTTTGT-CAC--TCA-AATGGTTGTCAACATTTTTCCATGGTAAA------CTCAACAAATATAACGTTTCTAATTCCGACGCTGTCTTTCTTGAATC-----ACTAATCTC---TATTAACAATAGTT---T-----AATT--GGAC-AAAAT--AT--A------GAAC-AAATAAATGGTTTT--GATTTCGAT-TTGTTA-ATTTCTTTCA
gi|5 : aaattgacaaattgaaatat-----TATTGCC-ACGAAAGCGATATCATGCTAG-CCTTTCGCCAAATTTATG--G---------GCCAATGTCATC--A--ATAT-----T-----TCA-ATC-A----TGCATCTAGGTTCTT--GTAC---A--C--TA--TAACCTATGTATA----TGATATT----------A-AGT--TAGCAAATATTTATCA-TGCTGAGGTTCAGTTCAACAAAACT------TCT---TC---ACCTGCATAACTTTACCT-----ACATTTTAC---TATTGATAACGGTTTTAA-----AAAGTTGTGCAAAA-C--AT--A------TAACAAAAGAGATGATCTT--GATGTTGATATCGTTA-CTGTTCattggaat
gi|6 : tttgattctttATATCTGGTCTGTT--ATGTTGGTGGCC---CATTCTTTACTCATGTTGAAATAAACAGACTGT--GTCTAT--GATCTTGCCTAGA------GGTTACTTAAT--CATTACCA-TTATTTT----AAATAAAA--TATTCA-TCTATTCGATGATACTTA-GTT-TTAAATTAGAGAAATTGT--AA--ATATTTTTATTGAT-----------AACAATT------------AT--G--CA-------T-CAC--TTG--T-TGAATACTTCATAAACTATTG-CTACAAAAG----TTAATGCTGTACTTTTCGCCAAATACATA--G---------GCTGCTGTCAtatatttagatgggaatattct
gi|7 : aaacgc--A--ATGC-----C-----T---TTTGA----TACTTTTAAATAACT--GGACGATATAC--TT--GA-CAT-T-TATATTTCTTTTTTTTT-GTC--TCA-AATGGTAGTCAATATCTTTCC-CAGTGAGGTCTAGCCAAATAAAATTAATG-TTCAAATTCTGAGATTGCTTTTCTTGGCTT-----ACATTTCTG---TATTGTTAATCTTTTAAT-----AA----GTCGAAAAAT--ATAAA------TGACAAAGTAAATGGTTTT--GAGTTCGCTATTGTTA-GTTTCCATCGTTataacattttcgattaaacttc
gi|8 : AAAGCATGCG--ATTATTCCGGTATAAC--TGTGTT-GATCAATAA-AAAATCGAATG------------AA----ATTGCATATCAGACGGTATAATGCTC--CTTCGTTAAGCACATA-CGACTT--G--TCAACGTTGT----------A-CAC-TA-TT-TACCATT---------AGCT--CGTGGTACTAATTAAAAAGAAACGTTACCG---CAGA-----AATC--TATATTTTTGGAAT-TTAAAA-TC--CATCCATGCTTTCTTTATTTATAGTAAAATTGACAGAtggat
gi|9 : ---------GTTTA-TGAATGCCAGT-CCATATATTTA----AAA-AATA--TATTTAATCGATTAGGTGTTATT---TTGAT----TT-----------------GTCTTCCCATGGGT-----------ACTAATTGGGCATCACTTGTTACA--GA-------CTCA---TTG--T-T------T--A-----TATTGC-TACGAGTGGAAGTTCATGTTTAGCCTTTCGTCTTATGCACA--GACACGTTTTGCCACTGCCTTC--A--ATA------T-----T---AT--A--------TCTAAATACCTAGGGACGAgtt