lowQualScore : 11111111111111111111111111111111111111111111111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111111111111111111 11111111111111111111111111111111111111111111111111
lowQualScore : 22 33333 11 11111 222222 111 111 11 1 1111 33333333333333333 22 99999999999999999999999999999999999999999999999999 333333333 111 1111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 22 3333 1 1 222 22 444 11111111111111111111111111111111 33 111 00000000000000000000000000000000000000000000000000 3333333333333 111 22 1 1 555555555555 222 7777777777 2222
lowQualScore : 6 33 66 11111 11 0 77777 000000 5 888 000 44 1 1 7 4444 3 33333333333333333 1 00 11111111111111111111111111111111111111111111111111 9 3 1 222222222 0 7 333 6 8888888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 33 1111 6 6 6 6 6 6 7 5 111 33 6 7 666 11 0 6 6 66666666666666666666666666666666 4 77 6 0 222 3 2 8 99999999999999999999999999999999999999999999999999 6 2222222222222 777 9 11 0 3 5 666666666666 6 6 77 0 8 4 333 9999999999 0 1111 6
lowQualScore : . .. .. ..... .. . ..... ...... . ... ... .. . . . .... . ................. . .. .................................................. . . . ......... . . ... . ....... ............................................................................................................................................................ . .. .... . . . . . . . . ... .. . . ... .. . . . ................................ . .. . . ... . . . .................................................. . ............. ... . .. . . . ............ . . .. . . . ... .......... . .... .
lowQualScore : 7 00 77 66666 00 8 77777 333333 7 444 000 77 7 0 2 2222 5 88888888888888888 2 55 22222222222222222222222222222222222222222222222222 0 2 2 222222222 7 0 333 0 7777777 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 0000 0 0 0 0 0 0 0 0 000 00 0 3 777 77 7 0 0 77777777777777777777777777777777 7 00 0 7 222 5 5 8 55555555555555555555555555555555555555555555555555 0 8888888888888 555 2 00 0 2 8 555555555555 0 0 00 7 3 7 777 3333333333 7 7777 7
consensus : NNNCAATTCCCATTTAACGTTTTAATTCGATG-TTCAT--ATTA---AGTAGGAGCAGGACTAAA-A---TTTCG-TGACAAG---CTN-TTTAAAAAGCTTGAA----TGCATAC-AACTATATGCCTTTNGCGCAGCTACGCTA-AAAAAG--A-----------TCAT-------A----------GT------A-A-GTCAAAATTCCAAAAAAAATCAACCCATT-CAT-TTTTTACCTCGTCAAAACTTTC-GTTGACGGCCG-TTTTGAAACATACTGCAATAACAGNNTCTCGCGAGAATGGAACGTA-GATTTCATGTTCCCATATTTNGTNCTGTTTACTACAGNTTGTGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTTTGTCTTCGCTTTACTACGATTTCCTTATTTGGTAGAATAC-A---TTTA-CTCCGCNCACAAATTT--TAGCCGAAAGTATCCNANTGTNAACGGAAGTAT-GTATTTNANT-T----GG-TTTAC---CNCAA-A-CA-ATC-AGNAGGTCTTTGAAAANAACGG---ATTAA---AACACTCGAAAA-CATTTTANCA---ANTATAN-TAAACAGCTACAGGTTAGAGNTAAACGNTATATTGT----AG-CAACTATAATGTTTNATAGCTG
Reference ( gi|1 ) : TGTCAATTCCCACATAACATTTCAATTTGAT--TTCAT--ATTA---ATTAGGAGCAGGACTAAA-A---GTTTG-TGCCCAG---CTT-TTTGAAAAGTTTAAA----TGTATAC-TACCTTCTGCCTCTCATACAGCTATGCTT-AAAAA---------------TCA--------A----------AT------A-A-GTCAAAATTTAAAAAAAAATCAACCAATT-TAA-TTTTTACCTTGTCAGAAATTTCTGTTAAAAGCTA-TTTTGAAAT------CAGT--TGGGACCTTGAAAGTAT--AATGTACAACTTCCCATTTCTATATTTGGTTATGTTTACTAT-GTTTGGGTGAA--AATCAAAGTCATTCTTTCCGTTACAGAAGAAACAGATT-TTCTGCTTTGGTTCTAATTAGTTCTTACGGCATAATATTAAAATAATATTTCTTAAGGACACATCTAAAACAATATTCTGAACTGGCATTCACCATTTT---TTCACCTTACTGCAATTTC--TAATTG-CAGAATACAA---TTTAGCTA-GCTCACAAATTTA-TAACCGAAAGTATCCAAATGTGAACAGAA--AT-GAATTTGAAT-T----G--TTTACTTTCCCAA-A-CA-ATTAAACAGATCTTTGGAAAAAAAGG---ATTAA---AACACTTTAAAA-CATTTTATCA---AATATAA--AAATAACCACAAATTGGTGATAAAACATATATAATTACAAGCCAACCATAAAGTTTGATAGTTGA
gi|6 : CAATTTC-ATTTAACGTTTTAATTTG----TTCAT--ATTA---AGTAGAAGCACGACTAAA-C---TTTTG-TGACAAG---CTA-TTTAAAAAGCTTGAA----TGCATAC-GACTATATGCTTTTTGCGTAACTGAGGTA-AAAAAGGCAATAAATTTCAGTCA--------A----------GT------A-T-GTTAAAATTTCAAAAGAAATCAACCCATTACAT-TTTTTACCTCGACAGAACTTTCAGTTGATGGCCA-TTTTGAA
gi|5 : caatacagaaactcccattcATTCCCATTTAATGTTTTAATTCGATG-TTCAT--ATTA---AGTAGGAGTAGTACTAAA-A---TTTAA-AGTCACG---CTA-CTTAAAGAATTCATACCTCTATATAAATATATCCT-----TGGTATAAATATGCTTCAAAAAGTAATG---------TTATATTGTTTA----------GT------A-A-GTCAAACTTTAAAAAAAAAACAGCCAATT-TTT-TTTCTACCTTGTCAAAACATTCTGATGACAGCCG-TTTTAAAA--------AATAACAGGTTCTCGCGAGAATGGAACG-A-GATTTCATGTTCCCATATTTGGTT-TGTTTACTAT-GATTGt
gi|12 : tacataaatgcacATTCTCATTTAATGTTCTAATTTAATGTTTCATGAATTATAGAGTATGAGTAGGACTAAA-A---TTTCA-TGACAAG---CTttgtttatgactgaaaatctgacatatggaaggaaacacataact
gi|8 : aatacagaaatttctatttcTTTCAATTCGATG-TTCAT--A-TA---AGTAGGAGCTGGACT-GC-A---GTCTGCTGACAAG---TTA-TGTAAAAAGCTGTTA----TGCGTAC-AACTATATGCCTTTTGCACAGCTACACTA-AAAAG---------------TCA--------ATGAATCATGTAT------ACATGTCAAAATTCCCGAAAAAATCAACC-----CAC-TTTTTACCTgtgaagattgagtaatac
gi|15 : ttcaatacagaaacgcacaattcccatttttttgttgTCAACTT--T--TTCAT--AT-A---AGTAGGAGCAGAACTAAA-A---TATCA-TGGCAAG---CTG-TTT-AAAAGCCTGAA----TGCATAC-
gi|2 : TA---AGTAGGAGCAGTCCTAAA-A---CTATG-TGACAAG---TTT-TATAAAAAGTTTTAA----TGCATAG-AACTAAATGCCTTTAGTGCAGCTATGCCA-AAAAT---------------TCATTGA----A----------GTTCTGTCA-A-GTCAAAATTCCAAAAA---CCAACTCATT-TAAGTTTTTACCTTATCAAAAATT---GTTGACAG-TACTTTTGAAACATACTGCA----TAACATCTCGCGAGAAT--AACAT-----------TTTCTATATTTTGTGCTGTTTACTACAGTTTGTGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATT-T---TTCACCTTACatcta
gi|11 : cattaTAGGAGCAGGAGTAAATAAATATTTG-TATTTAAAATCTTCTTTAGGAAGCTTGAA----TGCATAC-AACcttgagctgaactgtgaactgaattgtatttgaaatcaagatttaccaaaacaaattagcaggtccttgaacacaatgaattaaaacacctgaaaacattttagcaaccaattaatttaacaactgcagattgttgttaaaattttttttgttgcaaccatctattgatacttg
gi|4 : gCATTTTGTCTTTGCTTTACTACGATTTCCTTATTTG---GTAGACTA---TTTACCTCCGCCCACAAGTTT--TAGCCAAAAGTATCCGAATGTTAACGGAAGTAT-ACATTTTATT-T----GGATTTAC---CGCAA-CTCA-AT--AGGAGGTTTTTG--AAAAACGGTTAATTAA---ATC-CTCAAAAA-CG-TTTAACAT--ATTATGT--AAACAGCTACAGGTAAGAGATAAACGGTATATTGT----AG-CAACCATAATGTTTTATAGtgtgtatatgtcttttggctaattacactaaataagggcaatgagctt
gi|3 : CATTTTGTTTTTGCTTTACTACGATTTCCTTATTTGGTAGACT-C-----TTTAGCTCCGCACACAGATTT--TAGCCGAATAAAT---AATGTTATCGGAAGTAT-ATATTTTATT-T----GGCTTAAC---CGCAACA-CA-GT--AGGAGGTTTTTG---AATAATG---GTTAATTAAACCCTCAAAAAACATTTTA-CA---GAT-TAAGTAAACAGCTACAGGTTAGAGGTAAACGATATATTAT----AG-CAACTGTAATGTTTCATAGCTGccgctaaaaatgtaaaagtacttgaaaatcttacggaagagaatcgcttccgcccagctccatatgcatcgatttactacccgtcttgacgaggggctatcaagtcaaaggcagtaatattatttct
gi|9 : cataatatttatatcagtgtgtatatttacatcggagagagacccacaatcaactgttttgcaacaaaaagaggtagctctagtaaatacaGAATACAAAAATT---CCA--CTCACAAACTCAAGAGTCAAAAGTATCCTGTTGTGAACGGAA--GTTGA--TTGGATAT----G--GATATTTACCCAA-A-CATATCAG-CAAGTCTTTGAAAACAACGA---ATTAA---AACACTAGAAAA-CATTTTATCA---ATTATTT--AAACAACTACAtttagaatgtcaaagtacctggaaaccttgcggaactgaatagcttccgcactgctccactacaaccatatgcattgactaactactgtatgagaggctatgagtcaaaggtagtaataatatttct
gi|2 : AACTGTGAACTGAA--TT-GTATTTGAAA-TCAAGA--TTTAC----CAAA-A-CA-AATTAGCAGGTCCTTGAACACAATGA---ATTAA---AACACCTGAAAA-CATTTTAGCAACCAAT-TAATTTAACAACTGCAGATTGTTGTTAAAATTTTTTTTGTTGCAA-CCATCTA------TTGATACTTG
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GTTTTTTAAAAGATAGAATTTAAGCACTCAAAAACATTTTATAAATAAATTATTTTAACAATACAGGTTGGAGATACATCCTTAGTAATTTGTTGCAACCTTAATTTTTGATATCCCAGTAAATTTACCCAAAAATTTGAAAACCTTGCAGAAGTGAATAGCTTTCGCACTGCTCCATTCCAAGGCTATGTATAATTGATTTACTACCC
Unaligned ( gi|10 ): AATTTACCTTAATTACTGAAAACCTTGCGGAAGTAAATAGATTCTACGTTGCTCCATTACAGGCTACCTTATGTATGGATTTACTACCATGATGGACTATGTTCTAATAGTAAAAGTTTTAATTTTTATATTTCAGTTG
Unaligned ( gi|13 ): CTTCATATTTAGTAGTCGCCGGATAAATGTCGTGACACTCTACTTAAAAAGCTTGAATGCGTACAATCATATGCTTTGGTACATTTTCGCTGAAAAGCAATGAAAT
Unaligned ( gi|14 ): TATTATGTAGGTGCAGAACTTAACTTTTATGACAAGCTTGAATGCATACAACTATGCCTTTTAATGCTTTTATGCAT
Unaligned ( gi|16 ): AGTTTCAGTACAGAAACACATATTCCCATTTAATATTTCATTTTGATGTTTATACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 1111 222222222222222222222222222222222222222222222222222 1 11111 3 777777777777777777 444444444444444444 11 22 1 7777777777777777777777 1 2 22 8888888888 2222 22222222222 22 111 22222222 111 111 11111 222 333333333 1111 11 11111
lowQualScore : 7777 6 5 66 1 777 777 4 3 777 66 3 2 1 8888 9999 1 1 6 5 0 0 5 0 444444444444444444444444444444444444444444444444444 0 0 55555 2 2 3 0 22 44 000000000000000000 888888888888888888 0 0 1 66 44 1 3 88 7 4 7777777777777777777777 5 0 77 7777777777 4 4 4 4 4 3 3 3 4 1111 6 6 3 88888888888 1 33 2 4 1 1 666 9 1 22 99999999 8 444 8 111 77777 99 3 7 3 333 1 7 2 6 33 6 1 888888888 0 1 1 4444 8 11 88888 8 3 1
lowQualScore : .... . . .. . ... ... . . ... .. . . . .... .... . . . . . . . . ................................................... . . ..... . . . . .. .. .................. .................. . . . .. .. . . .. . . ...................... . . .. .......... . . . . . . . . . .... . . . ........... . .. . . . . ... . . .. ........ . ... . ... ..... .. . . . ... . . . . .. . . ......... . . . .... . .. ..... . . .
lowQualScore : 0000 4 7 99 9 888 000 0 0 000 44 3 2 6 5555 4444 4 0 3 7 4 4 7 3 000000000000000000000000000000000000000000000000000 8 0 88888 0 5 2 0 22 55 000000000000000000 333333333333333333 7 7 0 00 33 0 3 33 3 0 5555555555555555555555 5 0 55 5555555555 0 0 0 0 0 0 0 0 0 5555 7 7 0 88888888888 0 88 5 5 0 0 444 0 0 44 22222222 0 000 8 888 44444 00 2 5 7 333 8 3 2 7 55 7 0 555555555 7 4 0 0000 0 00 44444 0 0 0
consensus : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAAA------AG-------------GTCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCNATT-TA-NTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-CGTTTCTATATTTGGTT-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTACA-TTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAATGTGAACGGAAGTATGTATTTGATTT---GGA--TTTA-C---CGCAA-A-CA-A-TTAGN-AGGTCTTTGAAAANAACGG---ATTAAANCACTCGAAAA-CATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
Reference ( family-1749 ) : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAAA------AG-------------ATCA-------T---AGT------A-A---GTCAAAATTCCAAAAAAAATCAACCCATT-CA-TTTTTTACCTCGTCAAAACTTTC-GTTGACGGCCGTTTTGAAACATACTGCAATAACAGNNTCTCGCGAGAATGGAACGTA-GATTTCATGTTCCCATATTTNGTNCTGTTTACTACAGNTTG-TGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTTTGTCTTCGCTTTACTACGATTTCCTTATTTGGTAGAATACA-TTTA-C-TCCGCNCACAAATTT--TAGCCGAAAGTATCCNANTGTNAACGGAAGTATGTATTTNANTT---GG---TTTA-C---CNCAA-A-CA-A-TCAGN-AGGTCTTTGAAAANAACGG---ATTAAAACACTCGAAAA-CATTTTANCA-ANTATANTA----AACAGCTACAGGTTAGAGNTAAA-CGNTA-TA--TTGT----AG-CAACTATAATGTTTNATAGCTG
gi|1 : CAATTCCCACAT----AACATTTCAATTTGAT-TT-CAT--ATTA---ATTAGGAGCAGGACTAAA---AG-TTTGTG---CCCAGCTT-TTTGAAAAGTTTAAATGT----ATACTAC----CTTCTGCCTCTCATAC-AGCTATGC-TTAAAA------A---------------TCA-----------AAT------A-A---GTCAAAATTTAAAAAAAAATCAACCAATT-TA-ATTTTTACCTTGTCAGAAATTTCTGTTAAAAGCTATTTTGAAAT------CAGT--TGGGACCTTGAAAGTAT--AATGTACAACTTCCCATTTCTATATTTGGTTATGTTTACTAT-GTTTG-GGTGAA--AATCAAAGTCATTCTTTCCGTTACAGAAGAAACAGATT-TTCTGCTTTGGTTCTAATTAGTTCTTACGGCATAATATTAAAATAATATTTCTTAAGGACACATCTAAAACAATATTCTGAACTGGCATTCACCATTTT---TTCACCTTACTGCAATTTC--TAATTG-CAGAATACAATTTA-G-CTAGCTCACAAATTTA-TAACCGAAAGTATCCAAATGTGAACAGAA--ATGAATTTGAATT---G----TTTA-CTTTCCCAA-A-CA-A-TTAAACAGATCTTTGGAAAAAAAGG---ATTAAAACACTTTAAAA-CATTTTATCA-AATATAA-A----AATAACCACAAATTGGTGATAAA-ACATA-TA--TAATTACAAGCCAACCATAAAGTTTGATAGTTG
gi|11 : tgtGTAGGAGCAGGAGTAAATAAATATTTGTATTTAAAATCTTCTTTAGGAAGCTTGAATGC----ATACAACTGTGTATATGTCTTTTG-GCTAATTACAC-TAAATA------AG-------------a
gi|12 : ATTCTCATTT----AATGTTCTAATTTAATGTTTCATGAATTATAGAGTATGAGTAGGACTAAA---AT-TTCATG---ACAAGCTG-T----GAAGATTGAGTA-----ATACggcaatgagctt
gi|13 : aatacagaaatttctatttcTT-CAT--ATTT---AGTAGTCGCCGGAT--AA---AT-GTCGTG---ACACTCTA-CTTAAAAAGCTTGAATGC----GTACAAT----CATATG-CTTTGGTAC-ATTTTCGC-TGAAAA------
gi|14 : cT--ATTA---TGTAGGTGCAGAACTTAA---CT-TTTATG---ACAA-------------GCTTGAATGC----ATACAAC------TATGCCTTTgcaatgaaat
gi|15 : TT-CAT--AT-A---AGTAGGAGCAGAACTAAA---AT-ATCATG---GCAAGCTG-TTT-AAAAGCCTGAATGC----ATACATC----TAtaatgcttttatgcat
gi|2 : tcaactttTA---AGTAGGAGCAGTCCTAAA---AC-TATGTG---ACAAGTTT-TATAAAAAGTTTTAATGC----ATAGAAC----TAAATGCCTTTAGTGC-AGCTATGC-CAAAAA------T---------------TCA-------TTGAAGTTCTGTCA-A---GTCAAAATTCCAAAAA---CCAACTCATT-TAAGTTTTTACCTTATCAAAAATT---GTTGACAGTACTTTTGAAACATACTGCA-TAACA---TCTCGCGAGAAT--AACAT-----------TTTCTATATTTTGTGCTGTTTACTACAGTTTG-TGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTT----TTCACCTTAC
gi|2 : cattaACTGTGAACTGAA-T-TGTATTTGAAATCAAGA---TTTA-C---CA-AA-A-CA-AATTAGC-AGGTCCTTGAACACAATGA---ATTAAAACACCTGAAAA-CATTTTAGCA-ACCA-ATTAATTTAACAACTGCAGATTGTTGTTAAA-ATTTT-TT--TTGT----TG-CAACCATcttgagctgaactgtgaactgaattgtatttgaaatcaagatttaccaaaacaaattagcaggtccttgaacacaatgaattaaaacacctgaaaacattttagcaaccaattaatttaacaactgcagattgttgttaaaattttttttgttgcaaccatctattgatacttg
gi|3 : cattataagtaggagcagtcctaaaactatgtgacaagttttataaaaagttttaatgcatagaactaaatgcctttagtgcagctatgccaaaaattcattgaagttctgtcaagtcaaaattccaaaaaccaactcatttaagtttttaccttatcaaaaattgttgacagtacttttgaaacatactgcataacatctcgcgagaataacattttctatattttgtgctgtttactacagtttgtgtacatgaataaaaatcaaaattattctcttcttctaatagcattatatttgaatattgatttttgagaacacgtttaaaacagttttatgaaattgcacacgccatttttcaccttaccttgagctgaCATTTTGTTTTTGCTTTACTACGATTTCCTTATTTGGTAGACT-C--TTTAGC-TCCGCACACAGATTT--TAGCCGAATAAAT---AATGTTATCGGAAGTATATATTTTATTT---GG---CTTAAC---CGCAACA-CA-G-T-AGG-AGGTTTTTGAA--TAATGGTTAATTAAACC-CTCAAAAAACATTTTACAG-ATTA-AGTA----AACAGCTACAGGTTAGAGGTAAA-CGATA-TA--TTAT----AG-CAACTGTAATGTTTCATAGCTGctattgatacttg
gi|4 : cataatatttatatcagtgtgtatatttacatcggagagagacccacaatcaactgttttgcaacaaaaagaggtagctctagtaaatacaCATTTTGTCTTTGCTTTACTACGATTTCCTTATTTGGTAGACTA---TTTA-CCTCCGCCCACAAGTTT--TAGCCAAAAGTATCCGAATGTTAACGGAAGTATACATTTTATTT---GGA--TTTA-C---CGCAA-CTCA-A-T-AGG-AGGTTTTTGAAAA--ACGGTTAATTAAATC-CTCAAAAA-CGTTT-AACATATTAT-GTA----AACAGCTACAGGTAAGAGATAAA-CGGTA-TA--TTGT----AG-CAACCATAATGTTTTATAGCCGtttagaatgtcaaagtacctggaaaccttgcggaactgaatagcttccgcactgctccactacaaccatatgcattgactaactactgtatgagaggctatgagtcaaaggtagtaataatatttct
gi|5 : ATTCCCATTT----AATGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGTAGTACTAAA---AT-TTAAAG---TCACGCTA-CTTAAAGAATTC--ATACCTCTATATAAA----TATAT--CCTTGGTAT-AAATATGCTTCAAAA------AGTAAT---------GTTATATTGTTT---AGT------A-A---GTCAAACTTTAAAAAAAAAACAGCCAATT-TT-TTTTCTACCTTGTCAAAACATTCTGATGACAGCCGTTTTAAAA--------AATAACAGGTTCTCGCGAGAATGGAACG-A-GATTTCATGTTCCCATATTTGGTT-TGTTTACTAT-GATTGTTGTTTATGACTGAAAATCctaaaaatgtaaaagtacttgaaaatcttacggaagagaatcgcttccgcccagctccatatgcatcgatttactacccgtcttgacgaggggctatcaagtcaaaggcagtaatattatttct
gi|6 : tacataaatgcacCAATTTC-ATTT----AACGTTTTAATT---TGTT-CAT--ATTA---AGTAGAAGCACGACTAAA---CT-TTTGTG---ACAAGCTA-TTTAAAAAGCTTGAATGC----ATACGAC----TATATGCTTTTTGCGT-AACTGAGG-TAAAAA------AGGCAATAAATTTCAGTCA-----------AGT------A-T---GTTAAAATTTCAAAAGAAATCAACCCATTACA-TTTTTTACCTCGACAGAACTTTCAGTTGATGGCCATTTTGAAtgacatatggaaggaaacacataact
gi|7 : caatacagaaactcccattcGTTTTTTAAAAGATAGA---ATTTAAGCACTCAAAAA-CATTTTAT-A-AATAAATTATTTTAACAA-TACAGGTTGGAGATACATCCTTAGTAATTTGT----TG-CAACCTTAATTTTTGATAt
gi|8 : CAATTCCCATTTTTTTGTTGTTTCAATTCGATGTT-CAT--AT-A---AGTAGGAGCTGGACTGCA---GT-CTGCTG---ACAAGTTA-TGTAAAAAGCTGTTATGC----GTACAAC----TATATGCCTTTTGCAC-AGCTACAC-TAAAAAGTCAATGA-------------ATCA-------T----GT------ATACATGTCAAAATTCCCGAAAAAATCAACC-----CA-CTTTTTACCTtcccagtaaatttacccaaaaatttgaaaaccttgcagaagtgaatagctttcgcactgctccattccaaggctatgtataattgatttactaccc
gi|9 : ttcaatacagaaacgcaGAATACA-AAAA-T-TCCACTCACAAACTCAAGAGTCAAAAGTATCCTGTTGTGAACGGAAGT-TG-ATTGGATAT---GGATATTTA-C---C-CAA-A-CATA-TCAGC-AAGTCTTTGAAAACAACGA---ATTAAAACACTAGAAAA-CATTTTATCA-ATTAT-TTA----AACAACTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTTACCTTAATTACTGAAAACCTTGCGGAAGTAAATAGATTCTACGTTGCTCCATTACAGGCTACCTTATGTATGGATTTACTACCATGATGGACTATGTTCTAATAGTAAAAGTTTTAATTTTTATATTTCAGTTG
Unaligned ( gi|16 ): AGTTTCAGTACAGAAACACATATTCCCATTTAATATTTCATTTTGATGTTTATACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111 0000000000000000000000000000000000000000000000000000 111 777777777777777777 11 6666666666666 222 11 1 7777777777777777777777 1 1 11 4444444444 2222 22222222222 22 111 11 111 111 111 222222 222 333333333 1111 11 11111
lowQualScore : 7777 6 5 66 1 777 777 4 3 777 66 3 2 1 8888 9999 1 1 6 5 0 0 5 0 9999999999999999999999999999999999999999999999999999 5 11 444 1 1 3 22 44 666666666666666666 88 4444444444444 222 44 3 22 7 1 4444444444444444444444 5 5 77 1111111111 1 1 1 1 1 1 1 1 1 1111 6 7 1 88888888888 1 55 3 8 666 9 11 111 444 8 111 222222 1 1 3 3 333 1 7 88 33 6 1 888888888 1 0000 8 11 88888 8 4 1
lowQualScore : .... . . .. . ... ... . . ... .. . . . .... .... . . . . . . . . .................................................... . .. ... . . . .. .. .................. .. ............. ... .. . .. . . ...................... . . .. .......... . . . . . . . . . .... . . . ........... . .. . . ... . .. ... ... . ... ...... . . . . ... . . .. .. . . ......... . .... . .. ..... . . .
lowQualScore : 0000 4 7 99 9 888 000 0 0 000 44 3 2 6 5555 4444 4 0 3 7 4 4 7 3 4444444444444444444444444444444444444444444444444444 6 88 888 0 0 2 22 55 777777777777777777 33 7777777777777 777 00 3 00 3 0 5555555555555555555555 5 0 55 0000000000 0 0 0 0 0 0 0 0 0 5555 7 3 0 88888888888 2 55 2 0 444 0 00 666 000 2 888 666666 0 7 3 7 333 0 3 88 55 7 0 555555555 4 0000 0 00 44444 0 6 0
consensus : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGG--ATTTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
Reference ( family-1749 ) : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCNATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGG--ATTTAC---CGCAA-A-CA-A-TT-AGNAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
gi|1 : CAATTCCCACAT----AACATTTCAATTTGAT-TT-CAT--ATTA---ATTAGGAGCAGGACTAAA---AG-TTTGTG---CCCAGCTT-TTTGAAAAGTTTAAATGT----ATACTAC----CTTCTGCCTCTCATAC-AGCTATGC-TTAAA----AA-----------------TCA-----------AAT------A-A---GTCAAAATTTAAAAAAAAATCAACCAATT-T-AATTTTTACCTTGTCAGAAATTTCTGTTAAAAGCTATTTTGAAAT------CAGT--TGGGACCTTGAAAGTAT--AATGTACAACTTC-CCATTTCTATATTTGGT-TATGTTTACTAT-GTTTG-GGTGAA--AATCAAAGTCATTCTTTCCGTTACAGAAGAAACAGATT-TTCTGCTTTGGTTCTAATTAGTTCTTACGGCATAATATTAAAATAATATTTCTTAAGGACACATCTAAAACAATATTCTGAACTGGCATTCACCATTTT---TTCACCTTACTGCAATTT-CTAATT--GCAGAATACAATTTA-G-CTAGCTCACAAATTTA-TAACCGAAAGTATCCAAA-TGTGAACAGAA--ATGAATTTGA--ATTG----TTTACTTTCCCAA-A-CA-A-TTAAACAGATCTTTGGAAAAAAAGG---ATTAAAACACTT-TAAAACATTTTATCA-AATATAA-A----AATAACCACAAATTGGTGATAAA-ACATA-TA--TAATTACAAGCCAACCATAAAGTTTGATAG
gi|11 : tgtGTAGGAGCAGGAGTAAATAAATATTTGTATTTAAAATCTTCTTTAGGAAGCTTGAATGC----ATACAACTGTGTATATGTCTTTTG-GCTAATTACAC-TAAAT----AAG-------------G--GCA-------ttga
gi|12 : ATTCTCATTT----AATGTTCTAATTTAATGTTTCATGAATTATAGAGTATGAGTAGGACTAAA---AT-TTCATG---ACAAGCTG-T----GAAGATTGAGTA-----ATACatgagctt
gi|13 : aatacagaaatttctatttcTT-CAT--ATTT---AGTAGTCGCCGGAT--AA---AT-GTCGTG---ACACTCTA-CTTAAAAAGCTTGAATGC----GTACAAT----CATATG-CTTTGGTAC-ATTTTCGC-TGAAA----A
gi|14 : cT--ATTA---TGTAGGTGCAGAACTTAA---CT-TTTATG---ACAA-------------GCTTGAATGC----ATACAAC------TATGCCTTTgcaatgaaat
gi|15 : TT-CAT--AT-A---AGTAGGAGCAGAACTAAA---AT-ATCATG---GCAAGCTG-TTT-AAAAGCCTGAATGC----ATACATC----TAtaatgcttttatgcat
gi|2 : tcaactttTA---AGTAGGAGCAGTCCTAAA---AC-TATGTG---ACAAGTTT-TATAAAAAGTTTTAATGC----ATAGAAC----TAAATGCCTTTAGTGC-AGCTATGC-CAAAA----A---------------T--TCA-------TTGAAGTTCTGTCA-A---GTCAAAATTCC---AAAAACCAACTCATT-TAAGTTTTTACCTTATCAAAAAT---TGTTGACAGTACTTTTGAAACATACTGCA-TAAC--A-TCTCGCGAGAAT--AACAT------------TTTCTATATTTTGTGC-TGTTTACTACAGTTTG-TGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTT----TTCACCTTAC
gi|2 : cattaCTGAACTGTGAACTGAA-T-TGTATTTGAAATCAAG--ATTTAC---CA-AA-A-CA-AATT-AGCAGGTCCTTGAACACAATGA---ATTAAAACACCT-GAAAACATTTTAGCA-ACCA-ATTAATTTAACAACTGCAGATTGTTGTTAAA-ATTTT-TT--TTGT----TG-CAACCATcttgagctgaactgtgaactgaattgtatttgaaatcaagatttaccaaaacaaattagcaggtccttgaacacaatgaattaaaacacctgaaaacattttagcaaccaattaatttaacaactgcagattgttgttaaaattttttttgttgcaaccatctattgatacttg
gi|3 : cattataagtaggagcagtcctaaaactatgtgacaagttttataaaaagttttaatgcatagaactaaatgcctttagtgcagctatgccaaaaattcattgaagttctgtcaagtcaaaattccaaaaaccaactcatttaagtttttaccttatcaaaaattgttgacagtacttttgaaacatactgcataacatctcgcgagaataacattttctatattttgtgctgtttactacagtttgtgtacatgaataaaaatcaaaattattctcttcttctaatagcattatatttgaatattgatttttgagaacacgtttaaaacagttttatgaaattgcacacgccatttttcaccttaccttgagCATTTTGTTTTTGCTTTACTACGATTTCCTTATTTGGTAGACT-C--TTTAGC-TCCGCACACAGATTT--TAGCCGAATAAAT---AA-TGTTATCGGAAGTATATATTTTA--TTTGG--CTTAAC---CGCAACA-CA-G--T-AGGAGGTTTTTG--AATAATGGTTAATTAAACC-CTCAAAAAACATTTTACAG-ATTA-AGTA----AACAGCTACAGGTTAGAGGTAAA-CGATA-TA--TTAT----AG-CAACTGTAATGTTTCATAGCTGctattgatacttg
gi|4 : cataatatttatatcagtgtgtatatttacatcggagagagacccacaatcaactgttttgcaacaaaaagaggtagctctagtaaatacaCATTTTGTCTTTGCTTTACTACGATTTCCTTATTTGGTAGACTA---TTTA-CCTCCGCCCACAAGTTT--TAGCCAAAAGTATCCGAA-TGTTAACGGAAGTATACATTTTA--TTTGG--ATTTAC---CGCAA-CTCA-A--T-AGGAGGTTTTTGAAA--AACGGTTAATTAAATC-CTC-AAAAACG-TTTAACATATTAT-GTA----AACAGCTACAGGTAAGAGATAAA-CGGTA-TA--TTGT----AG-CAACCATAATGTTTTATAGCCGtttagaatgtcaaagtacctggaaaccttgcggaactgaatagcttccgcactgctccactacaaccatatgcattgactaactactgtatgagaggctatgagtcaaaggtagtaataatatttct
gi|5 : ATTCCCATTT----AATGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGTAGTACTAAA---AT-TTAAAG---TCACGCTA-CTTAAAGAATTC--ATACCTCTATATAAA----TATAT--CCTTGGTAT-AAATATGCTTCAAA----AAGTAAT---------G--TTATATTGTTT---AGT------A-A---GTCAAACTTTAAAAAAAAAACAGCCAATT-T-TTTTTCTACCTTGTCAAAACATTCTGATGACAGCCGTTTTAAAA--------AATAACAGGTTCTCGCGAGAATGGAACG-A-GATTTCAT-GTTCCCATATTTGGT-T-TGTTTACTAT-GATTGTTGTTTATGACTGAAAATCctaaaaatgtaaaagtacttgaaaatcttacggaagagaatcgcttccgcccagctccatatgcatcgatttactacccgtcttgacgaggggctatcaagtcaaaggcagtaatattatttct
gi|6 : tacataaatgcacCAATTTC-ATTT----AACGTTTTAATT---TGTT-CAT--ATTA---AGTAGAAGCACGACTAAA---CT-TTTGTG---ACAAGCTA-TTTAAAAAGCTTGAATGC----ATACGAC----TATATGCTTTTTGCGT-AACTGAGG-TAAAA----AAGGCAATAAATTTCAG--TCA-----------AGT------A-T---GTTAAAATTTCAAAAGAAATCAACCCATTAC-ATTTTTTACCTCGACAGAACTTTCAGTTGATGGCCATTTTGAAtgacatatggaaggaaacacataact
gi|7 : caatacagaaactcccattcGTTTTTTAAAAGATAGA---ATTTAAGCACTC-AAAAACATTTTAT-A-AATAAATTATTTTAACAA-TACAGGTTGGAGATACATCCTTAGTAATTTGT----TG-CAACCTTAATTTTTGATATCCt
gi|8 : CAATTCCCATTTTTTTGTTGTTTCAATTCGATGTT-CAT--AT-A---AGTAGGAGCTGGACTGCA---GT-CTGCTG---ACAAGTTA-TGTAAAAAGCTGTTATGC----GTACAAC----TATATGCCTTTTGCAC-AGCTACAC-TAAAAAGTCAAT-------------GAATCA-------T----GT------ATACATGTCAAAATTCCCGAAAAAATCAACCC------ACTTTTTACCTcagtaaatttacccaaaaatttgaaaaccttgcagaagtgaatagctttcgcactgctccattccaaggctatgtataattgatttactaccc
gi|9 : ttcaatacagaaacgcaGAATAC-AAAAA-T-TCCACTCACAAACTCAAGAGTCAAAAGTATCCTGT-TGTGAACGGAAGT-TG-ATTGGA--TATGGATATTTAC---C-CAA-A-CATA-TC-AGCAAGTCTTTGAAAACAACGA---ATTAAAACACTA-GAAAACATTTTATCA-ATTAT-TTA----AACAACTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTTACCTTAATTACTGAAAACCTTGCGGAAGTAAATAGATTCTACGTTGCTCCATTACAGGCTACCTTATGTATGGATTTACTACCATGATGGACTATGTTCTAATAGTAAAAGTTTTAATTTTTATATTTCAGTTG
Unaligned ( gi|16 ): AGTTTCAGTACAGAAACACATATTCCCATTTAATATTTCATTTTGATGTTTATACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111 0000000000000000000000000000000000000000000000000000 111 777777777777777777 11 6666666666666 222 11 1 7777777777777777777777 1 1 11 4444444444 2222 22222222222 22 111 11 111 111 111 222222 222 333333333 1111 11 11111
lowQualScore : 7777 6 5 66 1 777 777 4 3 777 66 3 2 1 8888 9999 1 1 6 5 0 0 5 0 9999999999999999999999999999999999999999999999999999 5 0 444 1 1 3 22 44 666666666666666666 88 4444444444444 222 44 3 22 7 1 4444444444444444444444 5 5 77 1111111111 1 1 1 1 1 1 1 1 1 1111 6 7 1 88888888888 1 55 3 8 666 9 11 111 444 8 111 222222 1 3 3 333 1 7 88 33 6 1 888888888 1 0000 8 11 88888 8 4 1
lowQualScore : .... . . .. . ... ... . . ... .. . . . .... .... . . . . . . . . .................................................... . . ... . . . .. .. .................. .. ............. ... .. . .. . . ...................... . . .. .......... . . . . . . . . . .... . . . ........... . .. . . ... . .. ... ... . ... ...... . . . ... . . .. .. . . ......... . .... . .. ..... . . .
lowQualScore : 0000 4 7 99 9 888 000 0 0 000 44 3 2 6 5555 4444 4 0 3 7 4 4 7 3 4444444444444444444444444444444444444444444444444444 6 8 888 0 0 2 22 55 777777777777777777 33 7777777777777 777 00 3 00 3 0 5555555555555555555555 5 0 55 0000000000 0 0 0 0 0 0 0 0 0 5555 7 3 0 88888888888 2 55 2 0 444 0 00 666 000 2 888 666666 7 3 7 333 0 3 88 55 7 0 555555555 4 0000 0 00 44444 0 6 0
consensus : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGG--ATTTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
Reference ( family-1749 ) : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGG--ATTTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
gi|1 : CAATTCCCACAT----AACATTTCAATTTGAT-TT-CAT--ATTA---ATTAGGAGCAGGACTAAA---AG-TTTGTG---CCCAGCTT-TTTGAAAAGTTTAAATGT----ATACTAC----CTTCTGCCTCTCATAC-AGCTATGC-TTAAA----AA-----------------TCA-----------AAT------A-A---GTCAAAATTTAAAAAAAAATCAACCAATT-T-AATTTTTACCTTGTCAGAAATTTCTGTTAAAAGCTATTTTGAAAT------CAGT--TGGGACCTTGAAAGTAT--AATGTACAACTTC-CCATTTCTATATTTGGT-TATGTTTACTAT-GTTTG-GGTGAA--AATCAAAGTCATTCTTTCCGTTACAGAAGAAACAGATT-TTCTGCTTTGGTTCTAATTAGTTCTTACGGCATAATATTAAAATAATATTTCTTAAGGACACATCTAAAACAATATTCTGAACTGGCATTCACCATTTT---TTCACCTTACTGCAATTT-CTAATT--GCAGAATACAATTTA-G-CTAGCTCACAAATTTA-TAACCGAAAGTATCCAAA-TGTGAACAGAA--ATGAATTTGA--ATTG----TTTACTTTCCCAA-A-CA-A-TTAAACAGATCTTTGGAAAAAAAGG---ATTAAAACACTT-TAAAACATTTTATCA-AATATAA-A----AATAACCACAAATTGGTGATAAA-ACATA-TA--TAATTACAAGCCAACCATAAAGTTTGATAG
gi|11 : tgtGTAGGAGCAGGAGTAAATAAATATTTGTATTTAAAATCTTCTTTAGGAAGCTTGAATGC----ATACAACTGTGTATATGTCTTTTG-GCTAATTACAC-TAAAT----AAG-------------G--GCA-------ttga
gi|12 : ATTCTCATTT----AATGTTCTAATTTAATGTTTCATGAATTATAGAGTATGAGTAGGACTAAA---AT-TTCATG---ACAAGCTG-T----GAAGATTGAGTA-----ATACatgagctt
gi|13 : aatacagaaatttctatttcTT-CAT--ATTT---AGTAGTCGCCGGAT--AA---AT-GTCGTG---ACACTCTA-CTTAAAAAGCTTGAATGC----GTACAAT----CATATG-CTTTGGTAC-ATTTTCGC-TGAAA----A
gi|14 : cT--ATTA---TGTAGGTGCAGAACTTAA---CT-TTTATG---ACAA-------------GCTTGAATGC----ATACAAC------TATGCCTTTgcaatgaaat
gi|15 : TT-CAT--AT-A---AGTAGGAGCAGAACTAAA---AT-ATCATG---GCAAGCTG-TTT-AAAAGCCTGAATGC----ATACATC----TAtaatgcttttatgcat
gi|2 : tcaactttTA---AGTAGGAGCAGTCCTAAA---AC-TATGTG---ACAAGTTT-TATAAAAAGTTTTAATGC----ATAGAAC----TAAATGCCTTTAGTGC-AGCTATGC-CAAAA----A---------------T--TCA-------TTGAAGTTCTGTCA-A---GTCAAAATTCC---AAAAACCAACTCATT-TAAGTTTTTACCTTATCAAAAAT---TGTTGACAGTACTTTTGAAACATACTGCA-TAAC--A-TCTCGCGAGAAT--AACAT------------TTTCTATATTTTGTGC-TGTTTACTACAGTTTG-TGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTT----TTCACCTTAC
gi|2 : cattaCTGAACTGTGAACTGAA-T-TGTATTTGAAATCAAG--ATTTAC---CA-AA-A-CA-AATT-AGCAGGTCCTTGAACACAATGA---ATTAAAACACCT-GAAAACATTTTAGCA-ACCA-ATTAATTTAACAACTGCAGATTGTTGTTAAA-ATTTT-TT--TTGT----TG-CAACCATcttgagctgaactgtgaactgaattgtatttgaaatcaagatttaccaaaacaaattagcaggtccttgaacacaatgaattaaaacacctgaaaacattttagcaaccaattaatttaacaactgcagattgttgttaaaattttttttgttgcaaccatctattgatacttg
gi|3 : cattataagtaggagcagtcctaaaactatgtgacaagttttataaaaagttttaatgcatagaactaaatgcctttagtgcagctatgccaaaaattcattgaagttctgtcaagtcaaaattccaaaaaccaactcatttaagtttttaccttatcaaaaattgttgacagtacttttgaaacatactgcataacatctcgcgagaataacattttctatattttgtgctgtttactacagtttgtgtacatgaataaaaatcaaaattattctcttcttctaatagcattatatttgaatattgatttttgagaacacgtttaaaacagttttatgaaattgcacacgccatttttcaccttaccttgagCATTTTGTTTTTGCTTTACTACGATTTCCTTATTTGGTAGACT-C--TTTAGC-TCCGCACACAGATTT--TAGCCGAATAAAT---AA-TGTTATCGGAAGTATATATTTTA--TTTGG--CTTAAC---CGCAACA-CA-G--T-AGGAGGTTTTTG--AATAATGGTTAATTAAACC-CTCAAAAAACATTTTACAG-ATTA-AGTA----AACAGCTACAGGTTAGAGGTAAA-CGATA-TA--TTAT----AG-CAACTGTAATGTTTCATAGCTGctattgatacttg
gi|4 : cataatatttatatcagtgtgtatatttacatcggagagagacccacaatcaactgttttgcaacaaaaagaggtagctctagtaaatacaCATTTTGTCTTTGCTTTACTACGATTTCCTTATTTGGTAGACTA---TTTA-CCTCCGCCCACAAGTTT--TAGCCAAAAGTATCCGAA-TGTTAACGGAAGTATACATTTTA--TTTGG--ATTTAC---CGCAA-CTCA-A--T-AGGAGGTTTTTGAAA--AACGGTTAATTAAATC-CTC-AAAAACG-TTTAACATATTAT-GTA----AACAGCTACAGGTAAGAGATAAA-CGGTA-TA--TTGT----AG-CAACCATAATGTTTTATAGCCGtttagaatgtcaaagtacctggaaaccttgcggaactgaatagcttccgcactgctccactacaaccatatgcattgactaactactgtatgagaggctatgagtcaaaggtagtaataatatttct
gi|5 : ATTCCCATTT----AATGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGTAGTACTAAA---AT-TTAAAG---TCACGCTA-CTTAAAGAATTC--ATACCTCTATATAAA----TATAT--CCTTGGTAT-AAATATGCTTCAAA----AAGTAAT---------G--TTATATTGTTT---AGT------A-A---GTCAAACTTTAAAAAAAAAACAGCCAATT-T-TTTTTCTACCTTGTCAAAACATTCTGATGACAGCCGTTTTAAAA--------AATAACAGGTTCTCGCGAGAATGGAACG-A-GATTTCAT-GTTCCCATATTTGGT-T-TGTTTACTAT-GATTGTTGTTTATGACTGAAAATCctaaaaatgtaaaagtacttgaaaatcttacggaagagaatcgcttccgcccagctccatatgcatcgatttactacccgtcttgacgaggggctatcaagtcaaaggcagtaatattatttct
gi|6 : tacataaatgcacCAATTTC-ATTT----AACGTTTTAATT---TGTT-CAT--ATTA---AGTAGAAGCACGACTAAA---CT-TTTGTG---ACAAGCTA-TTTAAAAAGCTTGAATGC----ATACGAC----TATATGCTTTTTGCGT-AACTGAGG-TAAAA----AAGGCAATAAATTTCAG--TCA-----------AGT------A-T---GTTAAAATTTCAAAAGAAATCAACCCATTAC-ATTTTTTACCTCGACAGAACTTTCAGTTGATGGCCATTTTGAAtgacatatggaaggaaacacataact
gi|7 : caatacagaaactcccattcGTTTTTTAAAAGATAGA---ATTTAAGCACTC-AAAAACATTTTAT-A-AATAAATTATTTTAACAA-TACAGGTTGGAGATACATCCTTAGTAATTTGT----TG-CAACCTTAATTTTTGATATCCt
gi|8 : CAATTCCCATTTTTTTGTTGTTTCAATTCGATGTT-CAT--AT-A---AGTAGGAGCTGGACTGCA---GT-CTGCTG---ACAAGTTA-TGTAAAAAGCTGTTATGC----GTACAAC----TATATGCCTTTTGCAC-AGCTACAC-TAAAAAGTCAAT-------------GAATCA-------T----GT------ATACATGTCAAAATTCCCGAAAAAATCAACCC------ACTTTTTACCTcagtaaatttacccaaaaatttgaaaaccttgcagaagtgaatagctttcgcactgctccattccaaggctatgtataattgatttactaccc
gi|9 : ttcaatacagaaacgcaGAATAC-AAAAA-T-TCCACTCACAAACTCAAGAGTCAAAAGTATCCTGT-TGTGAACGGAAGT-TG-ATTGGA--TATGGATATTTAC---C-CAA-A-CATA-TC-AGCAAGTCTTTGAAAACAACGA---ATTAAAACACTA-GAAAACATTTTATCA-ATTAT-TTA----AACAACTACA
blockSeqs : TTTT T T GA T TAG TAA A T TTT TC T A G CTCT TGTG T T T T T AAGGCAATAAATTTCAGTCAAGTAT A TA G A T CA AC CATACTGCATAACA GG AGATTTCATG GC CA T AC T A . A . . . T T T A T A A T A TGTT C T C ACAAAAAT A AA G C GTA T AA ATA . A CA AATT A C T TTA A A AA GC T C AATTATTTT T TCCT G AT T . A C
blockSeqs : . C . . T . . . C . G T A G . . C G T . . AAGTAATGTTATATTGTTTAGTAA A AC T C T CA CG AATAACAGGT . T T T . TT T G TGTC C T C CTTTAGC C . G . GTA T . A . G CT TATC A T T TTA C A G CA . T ATTAATTT A ATT . . A . G T
blockSeqs : . C . . T . . . C . A T A G . . C A T . . AGTCAATGAATCATGTATACAT C T T C . TG CA . A ATTTACC T . T . GT C . C . G A GT A G C . T A A AC . T AGTA A CGA . . A . A G
blockSeqs : . . . . T . . . T . G A A G . . C G C . . ATTCATTGAAGTTCTGTCAA . . C . . T . . A . . A AT A C A . G . A TC . A TGTA A CGG . . T . T
blockSeqs : . . T . . . C . T T A G . . C T C . . . . C . A . G T . T TTTA
blockSeqs : . . T . . . T . A T A T . . . T . . .
blockSeqs : . . . . . A . A G . G . . .
blockSeqs : . . . . T . A . . T . .
blockSeqs : . . G . . . . . .
blockSeqCons : C** GT* A** *** N****
originalCons : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGG--ATTTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGT----AG-CAACCGTAATGTTTNATAGCCG
finalCons : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATTC--ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGT-TGTATTTGA--TTTGGA--TTTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTC-GAAAACATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGTN----G-CAACCGTAATGTTTNATAGCCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTTACCTTAATTACTGAAAACCTTGCGGAAGTAAATAGATTCTACGTTGCTCCATTACAGGCTACCTTATGTATGGATTTACTACCATGATGGACTATGTTCTAATAGTAAAAGTTTTAATTTTTATATTTCAGTTG
Unaligned ( gi|16 ): AGTTTCAGTACAGAAACACATATTCCCATTTAATATTTCATTTTGATGTTTATACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111 0000000000000000000000000000000000000000000000000000 1 111 777777777777777777 11 6666666666666 222 11 1 7777777777777777777777 1 1 11 4444444444 2222 22222222222 22 222 11 11 111 111 222222 222 333333333 1111 11 22222
lowQualScore : 7777 6 5 66 1 777 777 4 3 777 66 3 2 1 8888 9999 1 1 6 5 0 0 5 0 9999999999999999999999999999999999999999999999999999 5 0 555 1 1 3 22 44 666666666666666666 88 4444444444444 222 44 3 22 7 1 4444444444444444444444 5 5 77 1111111111 1 1 1 1 1 1 1 1 1 1111 6 7 1 88888888888 1 55 3 8 000 9 11 0 11 444 8 111 222222 999 3 333 1 7 2 6 33 6 1 888888888 1 0000 8 11 1 00000 4 1
lowQualScore : .... . . .. . ... ... . . ... .. . . . .... .... . . . . . . . . .................................................... . . ... . . . .. .. .................. .. ............. ... .. . .. . . ...................... . . .. .......... . . . . . . . . . .... . . . ........... . .. . . ... . .. . .. ... . ... ...... ... . ... . . . . .. . . ......... . .... . .. . ..... . .
lowQualScore : 0000 4 7 99 9 888 000 0 0 000 44 3 2 6 5555 4444 4 0 3 7 4 4 7 3 4444444444444444444444444444444444444444444444444444 6 0 666 0 0 2 22 55 777777777777777777 33 7777777777777 777 00 3 00 3 0 5555555555555555555555 5 0 55 0000000000 0 0 0 0 0 0 0 0 0 5555 7 3 0 88888888888 2 55 2 0 000 0 00 6 00 000 2 888 666666 777 7 333 0 3 2 7 55 7 0 555555555 4 0000 0 00 0 00000 6 0
consensus : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCNATT-T-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGTATGTATTTGA--TTTGGAT--TTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTCGAAAA-CATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGTTG-----CAACCGTAATGTTTNATAGCCG
Reference ( family-1749 ) : NNNCAATTCCCATTT----AACGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGCAGGACTAAA---AT-TTCGTG---ACAAGCTN-TTTAAAAAGCTTGAATGC----ATACAAC----TATATGCCTTTNGCGC-AGCTACGC-TAAAA----AAG-------------G--TCA-------T---AGT------A-A---GTCAAAATTTCAAAAAAAATCAACCCATT-C-ANTTTTTACCTTGTCAGAANTTTCTGTTGACGGCCGTTTTGAAAC------CAGTAACGGG-TCTCGCGAGAAT--AACGTA-GACTTC-C-GTTTCTATATTTGGT-T-TGTTTACTAC-GTTTG-TGTNNATGAATNAAAATCATTCTTTCCGTTACAGAAGAAACAGATTATTCTGCTTCGGTTCTAATTAGTTCTTACGGCATNATATTNGAATANTGNTTCTTGAGGACACGTCTAAAACAGTNTTNTGAANTNGCACNCGCCATTTTGTCTTCGCCTTACTACGATTTCCTTATTTGGTAGANTAC-ATTTA-C-TCCGCTCACAAATTTA-TAGCCGAAAGTATCCGAA-TGTGAACGGAAGT-TGTATTTGA--TTTGGAT--TTAC---CGCAA-A-CA-A-TT-AGCAGGTCTTTGAAAANAACGG---ATTAAANCACTCGAAAA-CATTTTANCA-ANTATANTA----AACAACTACAGGTTGGAGATAAA-CNNTA-TA--TTGTNG-----CAACCGTAATGTTTNATAGCCG
gi|1 : CAATTCCCACAT----AACATTTCAATTTGAT-TT-CAT--ATTA---ATTAGGAGCAGGACTAAA---AG-TTTGTG---CCCAGCTT-TTTGAAAAGTTTAAATGT----ATACTAC----CTTCTGCCTCTCATAC-AGCTATGC-TTAAA----AA-----------------TCA-----------AAT------A-A---GTCAAAATTTAAAAAAAAATCAACCAATT-T-AATTTTTACCTTGTCAGAAATTTCTGTTAAAAGCTATTTTGAAAT------CAGT--TGGGACCTTGAAAGTAT--AATGTACAACTTC-CCATTTCTATATTTGGT-TATGTTTACTAT-GTTTG-GGTGAA--AATCAAAGTCATTCTTTCCGTTACAGAAGAAACAGATT-TTCTGCTTTGGTTCTAATTAGTTCTTACGGCATAATATTAAAATAATATTTCTTAAGGACACATCTAAAACAATATTCTGAACTGGCATTCACCATTTT---TTCACCTTACTGCAATTT-CTAATT--GCAGAATACAATTTA-G-CTAGCTCACAAATTTA-TAACCGAAAGTATCCAAA-TGTGAACAGAAA--TGAATTTGA--ATTG--T--TTACTTTCCCAA-A-CA-A-TTAAACAGATCTTTGGAAAAAAAGG---ATTAAAACACTTTAAAA-CATTTTATCA-AATATAA-A----AATAACCACAAATTGGTGATAAA-ACATA-TA--TAATTACAAGCCAACCATAAAGTTTGATAG
gi|11 : tgtGTAGGAGCAGGAGTAAATAAATATTTGTATTTAAAATCTTCTTTAGGAAGCTTGAATGC----ATACAACTGTGTATATGTCTTTTG-GCTAATTACAC-TAAAT----AAG-------------G--GCA-------ttga
gi|12 : ATTCTCATTT----AATGTTCTAATTTAATGTTTCATGAATTATAGAGTATGAGTAGGACTAAA---AT-TTCATG---ACAAGCTG-T----GAAGATTGAGTA-----ATACatgagctt
gi|13 : aatacagaaatttctatttcTT-CAT--ATTT---AGTAGTCGCCGGAT--AA---AT-GTCGTG---ACACTCTA-CTTAAAAAGCTTGAATGC----GTACAAT----CATATG-CTTTGGTAC-ATTTTCGC-TGAAA----A
gi|14 : cT--ATTA---TGTAGGTGCAGAACTTAA---CT-TTTATG---ACAA-------------GCTTGAATGC----ATACAAC------TATGCCTTTgcaatgaaat
gi|15 : TT-CAT--AT-A---AGTAGGAGCAGAACTAAA---AT-ATCATG---GCAAGCTG-TTT-AAAAGCCTGAATGC----ATACATC----TAtaatgcttttatgcat
gi|2 : tcaactttTA---AGTAGGAGCAGTCCTAAA---AC-TATGTG---ACAAGTTT-TATAAAAAGTTTTAATGC----ATAGAAC----TAAATGCCTTTAGTGC-AGCTATGC-CAAAA----A---------------T--TCA-------TTGAAGTTCTGTCA-A---GTCAAAATTCC---AAAAACCAACTCATT-TAAGTTTTTACCTTATCAAAAAT---TGTTGACAGTACTTTTGAAACATACTGCA-TAAC--A-TCTCGCGAGAAT--AACAT------------TTTCTATATTTTGTGC-TGTTTACTACAGTTTG-TGTACATGAATAAAAATCA----------------------AAATTATTCT-CTTC--TTCTAAT----------AGCATTATATTTGAATATTGATTTTTGAGAACACGTTTAAAACAGTTTTATGAAATTGCACACGCCATTT----TTCACCTTAC
gi|2 : cattaCTGAACTGTGAACTGAA-T-TGTATTTGAAATCAAGAT--TTAC---CA-AA-A-CA-AATT-AGCAGGTCCTTGAACACAATGA---ATTAAAACACCTGAAAA-CATTTTAGCA-ACCA-ATTAATTTAACAACTGCAGATTGTTGTTAAA-ATTTT-TT--TTGTTG-----CAACCATcttgagctgaactgtgaactgaattgtatttgaaatcaagatttaccaaaacaaattagcaggtccttgaacacaatgaattaaaacacctgaaaacattttagcaaccaattaatttaacaactgcagattgttgttaaaattttttttgttgcaaccatctattgatacttg
gi|3 : cattataagtaggagcagtcctaaaactatgtgacaagttttataaaaagttttaatgcatagaactaaatgcctttagtgcagctatgccaaaaattcattgaagttctgtcaagtcaaaattccaaaaaccaactcatttaagtttttaccttatcaaaaattgttgacagtacttttgaaacatactgcataacatctcgcgagaataacattttctatattttgtgctgtttactacagtttgtgtacatgaataaaaatcaaaattattctcttcttctaatagcattatatttgaatattgatttttgagaacacgtttaaaacagttttatgaaattgcacacgccatttttcaccttaccttgagCATTTTGTTTTTGCTTTACTACGATTTCCTTATTTGGTAGACT-C--TTTAGC-TCCGCACACAGATTT--TAGCCGAATAAAT---AA-TGTTATCGGAAGTATATATTTTA--TTTGGCT--TAAC---CGCAACA-CA-G-T--AGGAGGTTTTTGAA--TAATGGTTAATTAAACC-CTCAAAAAACATTTTACAG-ATTA-AGTA----AACAGCTACAGGTTAGAGGTAAA-CGATA-TA--TTATAG-----CAACTGTAATGTTTCATAGCTGctattgatacttg
gi|4 : cataatatttatatcagtgtgtatatttacatcggagagagacccacaatcaactgttttgcaacaaaaagaggtagctctagtaaatacaCATTTTGTCTTTGCTTTACTACGATTTCCTTATTTGGTAGACTA---TTTA-CCTCCGCCCACAAGTTT--TAGCCAAAAGTATCCGAA-TGTTAACGGAAGTATACATTTTA--TTTGGAT--TTAC---CGCAA-CTCA-A--T-AGGAGGTTTTTGAAA--AACGGTTAATTAAATC-CTCAAAAA-CG-TTTAACATATTAT-GTA----AACAGCTACAGGTAAGAGATAAA-CGGTA-TA--TTGTAG-----CAACCATAATGTTTTATAGCCGtttagaatgtcaaagtacctggaaaccttgcggaactgaatagcttccgcactgctccactacaaccatatgcattgactaactactgtatgagaggctatgagtcaaaggtagtaataatatttct
gi|5 : ATTCCCATTT----AATGTTTTAATTCGATGTT-CAT--ATTA---AGTAGGAGTAGTACTAAA---AT-TTAAAG---TCACGCTA-CTTAAAGAATTC--ATACCTCTATATAAA----TATAT--CCTTGGTAT-AAATATGCTTCAAA----AAGTAAT---------G--TTATATTGTTT---AGT------A-A---GTCAAACTTTAAAAAAAAAACAGCCAATT-T-TTTTTCTACCTTGTCAAAACATTCTGATGACAGCCGTTTTAAAA--------AATAACAGGTTCTCGCGAGAATGGAACG-A-GATTTCAT-GTTCCCATATTTGGT-T-TGTTTACTAT-GATTGTTGTTTATGACTGAAAATCctaaaaatgtaaaagtacttgaaaatcttacggaagagaatcgcttccgcccagctccatatgcatcgatttactacccgtcttgacgaggggctatcaagtcaaaggcagtaatattatttct
gi|6 : tacataaatgcacCAATTTC-ATTT----AACGTTTTAATT---TGTT-CAT--ATTA---AGTAGAAGCACGACTAAA---CT-TTTGTG---ACAAGCTA-TTTAAAAAGCTTGAATGC----ATACGAC----TATATGCTTTTTGCGT-AACTGAGG-TAAAA----AAGGCAATAAATTTCAG--TCA-----------AGT------A-T---GTTAAAATTTCAAAAGAAATCAACCCATTAC-ATTTTTTACCTCGACAGAACTTTCAGTTGATGGCCATTTTGAAtgacatatggaaggaaacacataact
gi|7 : caatacagaaactcccattcGTTTTTTAAAAGATAGA---ATTTAAGCACTCAAAAA-CATTTTAT-A-AATAAATTATTTTAACAA-TACAGGTTGGAGATACATCCTTAGTAATTTGTTG-----CAACCTTAATTTTTGATATCCt
gi|8 : CAATTCCCATTTTTTTGTTGTTTCAATTCGATGTT-CAT--AT-A---AGTAGGAGCTGGACTGCA---GT-CTGCTG---ACAAGTTA-TGTAAAAAGCTGTTATGC----GTACAAC----TATATGCCTTTTGCAC-AGCTACAC-TAAAAAGTCAAT-------------GAATCA-------T----GT------ATACATGTCAAAATTCCCGAAAAAATCAACC-----C-ACTTTTTACCTcagtaaatttacccaaaaatttgaaaaccttgcagaagtgaatagctttcgcactgctccattccaaggctatgtataattgatttactaccc
gi|9 : ttcaatacagaaacgcaGAATAC-AAAAA-T-TCCACTCACAAACTCAAGAGTCAAAAGTATCCTGT-TGTGAACGGAAGT-TG-ATTGGA--TATGGATATTTAC---C-CAA-A-CATA-TC-AGCAAGTCTTTGAAAACAACGA---ATTAAAACACTAGAAAA-CATTTTATCA-ATTAT-TTA----AACAACTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATTTACCTTAATTACTGAAAACCTTGCGGAAGTAAATAGATTCTACGTTGCTCCATTACAGGCTACCTTATGTATGGATTTACTACCATGATGGACTATGTTCTAATAGTAAAAGTTTTAATTTTTATATTTCAGTTG
Unaligned ( gi|16 ): AGTTTCAGTACAGAAACACATATTCCCATTTAATATTTCATTTTGATGTTTATACA