lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111
lowQualScore : 777 22 7777777777777 7777777777 555555555 111 1 11 222222222222 2 33333333 22 1 11111111 1111111111 22222222222 111111 111 11111 22222 222222 111111111 22 11 1 1 22222222222 2222222222222222 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 2222 1 1111 111 1 111 555555555555555555555555555555555 00000000000000000
lowQualScore : 000 33 9999999999999 4 7 9999999999 0 333333333 4 222 8 3 55 999999999999 1 3 2 1 8 4 88888888 66 5 0 99 3 1 5 1 1 4 3 4 9999999 6 3 33333333 5555555555 11111111111 66 3 000000 1 6 7 666 22222 555 1 4 3 11111 5 3 33 444 333333 000000000 33 2 77 33 3 7 3 6 22222222222 7777777777777777 7777777 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 3 44 5 6666 3 3 555 555 2222222222222 999999 6 3 99 1111 5 777 1 2222 777 4 2 55 3 22 000 7777 3 222222222222222222222222222222222 0 2 22222222222222222 66 4 8
lowQualScore : ... .. ............. . . .......... . ......... . ... . . .. ............ . . . . . . ........ .. . . .. . . . . . . . . ....... . . ........ .......... ........... .. . ...... . . . ... ..... ... . . . ..... . . .. ... ...... ......... .. . .. .. . . . . ........... ................ ....... . ................................................................................................. . . .. . .... . . ... ... ............. ...... . . .. .... . ... . .... ... . . .. . .. ... .... . ................................. . . ................. .. . .
lowQualScore : 000 00 5555555555555 0 0 0000000000 7 333333333 0 333 3 3 77 333333333333 0 7 5 2 8 0 55555555 22 0 1 33 0 6 7 6 7 5 0 4 8888888 8 6 22222222 9999999999 44444444444 11 3 555555 6 5 3 444 77777 888 0 0 7 88888 2 1 99 777 777777 666666666 77 7 77 11 1 0 1 9 22222222222 9999999999999999 9999999 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 1 22 8 1111 3 3 000 888 6666666666666 666666 5 6 44 6666 0 000 0 5555 888 0 8 55 6 55 555 7777 0 111111111111111111111111111111111 4 1 11111111111111111 11 4 9
consensus : NTAAAAACGTACAGTACAAATT--TTTTTATCGAATNTATTTTACGAATACC---------AAATTTTAT---------ANATGT-GATTAATT-GAAACTGAATTA---TATTC---CCTTTNTAATAACACAAGAGAAACAATTTTTCATTTATTCTTTGAATGTNTGTTTTCAAA-AA-NN-TTTTACTCTCTTTCGTAAGTCTGTTGAAANTAAAGTGCAATATTTCTTATGATA-TAACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCGTCTTT-A--------CAAGATAAT----------GTTATGTT----------CG-TATGTATCT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCT---ACCTAGTTTTGATG-TTTT---T-ATAGAACAAATTAAACGTT-AT--AAAAA---TCT--TG--AGT--------TATACT--CACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATA---T--TTTTGAGTAAATTA----------------TTCTG-------T-TT----A-------T---------TT--------------------T---------------A--------------G------CA-G-------ATTGATCAATAATT-AC--CACTATACATA-TGT-GTTANCAG--TTCAT---TAA------ATA----TTG------TTGTTT-TTG-CTATTTTCATCGTT---TAAATG----AAAAN--CT-CCTATCA--TA-TGTGCNTC-T-TT----CTATTACA------T-TTTATT--A---CTAAA--------TATCTTGTTATATGCATA-TACA--A--------TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
Reference ( gi|3 ) : ATAAAA---TACAGTATTAATTAATGTCCAACG--TTTATTTTAAGAATACT---------AAACTTTAT---------AAATGTGGATTTATT-GAAACCGAATTG---TGCTC---CTTTTGTAATAACACAAGAGAAACAATTTTTCATTGATTCGTTGAATGTATGTTTTCAAA-AATTT-TTTTACATTCTTTCATAAGTCTGTTGAAAGCAAAGTGCAATATTTCTTATGATA-TAACACCCCAAAATGTACTAT-TTGGCCCT-----T-TAATTTCATCCTT-A--------CAAGATAAT----------GTTATGTT----------TG-CATATATCT------TGATCTACAAGAAATGTATTGACTCATGCAGATTG-AA---AAAA-----TGTCT---ACCTAGTTTTGATG-TCTT---A-ATAGAACAAATTAAACGTT-AT--AAAAA---TCT--AA--AGT--------TATACT--CACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGAAC-AAAATGGTACA-TTATTCGAAATA---T--TTATGAGTAAATTA----------------TTCTG-------T-TT----A-------T---------TT--------------------T---------------A--------------G------CA-G-------ATGTATCAATAATT-AC--CATTATACATA-TGT-GTTATCAG--TTCAT---TAA------GTA----TTG------TTGTTT-TTA-CTGTCATCATCATT---TATATG----AAAAC--CT-CCTATAA--TA-TGTGCATC-T-TT----CTATTATA------T-TTCATT--A---CTACA--------TATCTTGTTGTATGCATG-TACATTAAAAT---TTTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAACA
gi|2 : TAAAAACGTACAGTACAAATT--TTTTTATCGAATATACTTTACGAATAC----------AAATTTTAT---------ACATGTGGATTAATT-GAAACTGGGTTA---AATTC---CCTTTGTAATAACACAAGAGAAACAATTTTTCATTTATTTGTTGAATGTATGTTTTCAAA-AA-TA-TTTTACTCTCTTTCCTAAATCTGTTGAAAGCAAAGTGCAATAGGTGTAATGATA-TATCTCCCCAAAATAAACTAT-TTAACGCT-----T-TAATTTCATCTTT-AAAAGATTTAAAGATAAT----------GTTATATT----------CG-CATGTATTG------TGATCTACAAGAAGTGTATTGACTCGAGCAGATTGAAA---AAAA-----TGTCT---TCCTAGCTTTAATG-TCTT---T-ATAAAGCAAATTAAAC-TT-AT---AAAA---TTT--TG--AGC--------TATACT--TACT-GTATA-TGTATCCTACATCAAAAGTAAATAATGTAAGTGC-AAAATGGAATATTTATTATAAATA---T--TTTTGAGTAAATTA----------------TTCTT-------T-TT----ATCTGTCTT---------TT--------------------T---------------A--------------AGAGTATCG-G-------ATTGATTAATAATT-AC--AATTTTACATT-TGT-GTTATCAG--TTCAT---TAAAATTTTATA----TTG-------TGTTT-TTAGCTATTTTCATCGTG---TAAATG----AAAAT--CT-CATATCA--TA-TGTGAATC-T-TT----CTATTACA------T-TTGATT--T---CTTAA--------CATCTTGTTTTAGGCATA----AATAA-------TTATGTATTCTGAAAT---AAA-AA-TATTAAA
gi|9 : atagatgaccattaag--TTTGTTTTAAATATGCTG--------AAATTTTATTTTTCTTACAAAT-----TTTGTTTGAAA--GAAATGAAATACTCTGACCCCAATAATAACACAAAAGAAACAATTTTTCATTTATTCTTTGAATGTTTGTTTTCAAA-AAAATATTTTACCCTCTTTCAGAAGTCTGTTGAAAATAAAGTGCAATATTTCTTATGATA-TAACTCCCAAAGATGTAGTAT-TTGGCCCT-----A-TAGTTTCATTTTT-A--------CATTATAAT----------GTTATGTT----------CG-TATGTATCT------TAATCTACAAGAAATATATTGACTCATGTAGATTG-AA---AATA-----TGTTT---ACCTAGTTTTGATG-TTTT---T-ATAGAACATAATAAACATT-AT--AAAAA---TAT--TG--AGT-------------T--CACT-TTAT-TTGTATCCTATATCAAAGGCA
gi|1 : caaattttttaaaatTATTTTACGAATACCCCGGAAACAAAACTTTAT---------AGATGTTGATTAAGT-GAAACTGAATTA---TGTTC---TTTTTCTAAATGCACAAGGGAAACAATTTTT--TT--TTCTATAAATATTTGTTTTTTA-----TT-TTTTATTCTTTTTCGTATGACTGTTTAAATAAAAATTCAATATTTCTTATGATA-TACCTTTCCCAAATACACTGT-TTGGACCT-----A-TAATTTC---TTT-A--------CAAGATAAT----------GATATGTT----------CG-TATGTATCT------TGATCTATAAGAAATATAATGACTCGAGCAGATTG-AA---AAAA-----CAACA---ACAAGGTTTTGATA-TTTT---T-AAAGAACAAATTAAACGTT-AT--CAAGA------------AG----------ATATT--CGCT-TAATAT-ATATCCTACATCAACGGCAAATAATATAAAGGC-AAAATGGAACA-TTATTAGAAATA---TATTTTTAAGCGAATTA----------------TTCTG-------T-TT----A-------T---------CT--------------------TCCTCT----------ATTTTTGCGCT----G------CACA-------ATG-ATCAATACTT-AC--CACCATAC--A-CGA-GTTAGCAG--TTTTTTTATAA------ATA----GTG------TTGTTT-TT--CTATTTTCATCGT
gi|14 : agtaattcttcttttaattttgaaagattagaaaactcaacgaattccaatgttgatttaattaaaaaaaacttaagcagtgaataaaagcctttatgcgctctttctgaaacttaaatcggaagttcctcaaaacgataataagtattgaacatagattttaaatacagacatgagtatagatgacttgaaaatataatacaaacaaaaattcatatttgtagaagacccaaaacttaagacaccacagaccaaactttttcatcgaataTTTTCATTTATTCTTTGAATGTATGTTTTCAAACAATAG-TTTTAC--TCTCTTGT---TTTAT--------AAGT---------CTTTTGAGAGTAAAGTGC---AATGTACTTT-TTGGCTCG-----C-TAGTTTCATCTTT-A--------CAAGATTAT----------GTTATGCT----------CGTCA-GTATCT------CGATCTACAAGAAATATATTGACTCGTGCAGATTG-AAAATAAAA-----TGTCT---ACCTAGTCTTGAa
gi|6 : -TTTTACTCTCTTTTGTAAGTCTTTTAAAAGTAAAGTATACTATTTCTTATACTA-TAACTCCCCAAACTGTACTGT-TTGGCCCTAGGCTTATAGTTTCGTCATT-A--------CAAGATAAT----------GTTATATT----------CG-TATGTATCT------TGATCTACAAGAAATGTATCAACCTTTGCAAATTG-AAGAAAAAA-----AGTCT---TCCTAGTTTTGATG-TTTT---TTATAAAATCAATTTAACATT-AT--AAAAA---TCT--TG--AAT--------AATACT--CACT-TTATAT-GTATCTTACATCGAAGGCAAGTAATATAAAGGC-AAAATGGAACA-TTATTAGAAATA---T--TTTTGAGTAAATTA----------------TTCTG-------T-TT----A-------TCTCTCTCTGTT--------------------TTAGAGC---------A--------------G------CA-G-------ATTGGTCAATTATT-AC--CTCTATAC--A-TGT-GTTAACAT--TTCAT---TAA------TAA----TTG------TTGTAT-TAT-TTGTTTTCATTGTT---TCAGTA----GATAT--CT-TCTATCATTTATTATGCCCC-T-TT----CTATTACA------C-TTTACT--A---gttatactttcactttatatgtatcctacattaaa
gi|17 : aataTTACGCTCTTTTGTAAGTTTAGCGAAATCGAAATGTTTTATTTCTTATAATA-TACCACT----AATATACTTTGTTGACTC------T-TACGTTCGACTTT-G--------CAAGATATT----------CATATGT---------------ATA-----------TGATCTACAATAAATATATTGACC--TGTAG----------AGAA-----TGCATTAAACTTAG-TTTGATga
gi|5 : TGTTGAAAATAAAGTGCAACATTTCTAATGATA-TAACTCTTTAAGATGTGCTAT-TTGGCCCT-----T-AAAGTTCATCTTT-A--------CAAGATAATATTAAATTATGTTATGTTCATATGTATATG-TATATGTTT------TCATTTACAAAGAATGAATTGACTCGTGAAGATTA-AA---AA--------GTCT---ACCCAGTTTTTATG-TTTT---T-ATAGAACAAATTAAATGTT-AT--AAAAA---TCT--TA--AGT--------TATACT--CACT-TTATA-TGCAACCTACATCAAAGGCAAACAATATAAAGGT-AAAATTGAAAA-TTATTAAAAGTA---T--TTTTGGGTAAATTA----------------TACTG-------T-TT----A-------T---------CTTACTCTGTTTTAGCTTGGAGT---------------A--------------G------CA-G-------AATTAACAATAATT-AC--CACTTTAC--A-TGT-GTTAACAT--TTCAT---AAA------ATA----TTT------TTGGTT-TT
gi|4 : gtaaaacggaataaaaaggaatctttaaagtattagctttagaatattactttcaaaataactatatggaaaaactcctatcacaCCCAAAATGTACAAT-TTTGCCTT-----T-AAAGTTCGTCTTT-A--------CGAGATAAT----------GTTATGTT----------CG-TATGTATCT------GGATCTGCAGGATATATGTGGACTAGAGCAGATTG-AAT--AAAATTAATTATCT---ACCTAGTTTTAATGTTTTT---T-ATAGAACCAATTAAACGTT-AT--ACA--------------------------ATATT--GAAT-ATATA-TGT----------AAAGACAA----------------AACGGAACA-TTATTAGAAATGCTCT--TTAT-------TTT----------------TTCTA-------TATTTCA-G-------T---------TT--------------------TGATC-----------A--------------A------CA-GA------ATGAAT-ACTAATT-AC--CACTATACATG-TGT-G-----AGCTTTTAT---TAA------ATATGATTTGTGTGACTTGTGT-TTG-CTATTTTCACCGTT---AAAATGGGGAAAAACAAGT-CTTATTA--TA-TGTGTCTC-CGTT----TTATAACA------TATACGTT--ATATCTAAATAATTTTTTATCCTGTTGATTGCATA-T-------AGT---ATTGTGTATTCTAAAAT--AAAT-GA-TATCAAAAACAAgtttgctattttc
gi|7 : ttttcacaagtttactctactttgataggccataaatttatacaagggcagatcttctACGTACTTC-TTGGCCCT-----T-TAGTTTTATATTT-A--------CA-TATATT----------GTTATGCC----------CG-TATGTATCTAGATCTTGATCTACAAGAAATATATTGACTCGTGTAGATTG-AA---AAAA-----TCTCT---GCATA-TTTT--------------ATAGAACAAATTAAACTCT-AT--AAAAG---TCT--TA--AGT--------TATACT--CACT-TTATA-TGTATCCTACATCAAAAGTAAATGATATAAGGAC-AAAATTGAACA-TTCTTAG-ATTG---T--TT---AATAAATGA----------------TACTG-------T-TT----G-------TC--------TT--------------------T---------------ATCTGTTTAGAAGTTG------CA-T-------ATTTGTCAATTATT-AC--CACTATACATG-TATAATTGTTGG--TTT-T---CAA---------------G------TTGTTTGTTA-TTTTCATC--C-TT---TAAATG----TGAAA--CT-CCTACCA--TA-TGTGCCTC-C-TT----CCATTACACGTTTTT-TTTTTT--A---AAATA--------TATATTGTTATATGCATA-TACA----------GTTGTGTAGTCTG-AAT--AAAACAA-TATTAAAAA
gi|8 : actgatattaagtttcaaattatatT-----T-TAATTTCATCTTTTA--------CAAAATAAT----------GTTTTGTT----------CG-CATGTATC---------A---ACAAGAAATA-----ACTTGTGCAGATTG-AA---AAAAA----TATCT---ATCTAGTTTTGAGA-TCTT---T-ATAGA-CAAATTAAACGTT-AA--ACAAA---TCTTGAATGAAT--------AATAAT--CACT-GTATGT-GTATCCTACATCAAAAGCAATTACTATAAGGTC-AAAATTGAACA-TTATTAGAAATATG-T--TTAT--GTAAATTATTG-------------TTTTGTCTTTCTT-TT----A-------T---------TTAGAG----------------T---------------A--------------G------CATA-------ATG-ATCAATAATT-GC--CACTGTACATA-TGT-GTTATCAT--TTCAT---TAA------A-A----TTG------TTG-TT-CTG-CTATTTTCATTGTT---T---TG----AAAA---CT-CCTATCA--TA-TATGCATC-T-TT----TTATTACA------T-TGTACT--A---CTAAA--------TATCTTGCTATTTGCATA-TACA--A--------TTGTTTATTCTGAAAT--AAAA-A-----TAAAAAAca
gi|15 : atT-----T-TAGTTTCATATTT-A--------CAAGAAGAT----------GTAATACT----------CA-TTTGTATCT------TAATCCGCAAGAAATATATTGACTCGTTCAAGTTGAAA---AAAA-----TATCT---ACCTTGTTTTGATG-TTTTTTAA-ATAAAACAAATTAAAC-TT-AT--AAAAG---TAT--TC--AGT--------TATATT--CATT-TTGCA-TGTATCCTACACCGAAGGCAAATAATATAAAGGC-AGCATGGAAGA-TTATCAGAAAca
gi|10 : ---ACCTAGTTTTTATG-TTTT---T-ATAGAACAAATTAAATGTT-AT--AAAAA---TCT--TG--AGT--------TATACT--CACT-TTATAT-GTATTCTACATCAAAGGCAAATAATATAAGGGC-ATAATGGAACA-TTGTTAGAAATA---T--TTTTAAGTAAATTA----------------TTCTG-------T-TTCTTTA-------T---------TT--------------------TTTGG-----------A--------------G------CA-GCGGATTGATCTATATATAATT-AC--CATTATACATT-TGT-GCTATCAG--TTCAT---TAA------ATA----CTG------TTGTTT-TTA-CTATCTTCATCATT---TATATG----AAAAA--AT-CCTTTAA--TA-TGTGTATC--------------------------TCCTC--A---CTAAA--------TATCTTGCAAAATGCCTA-AAC-----AAT---TC--TGTATTCTAAAAT--AAAA-AA-TATTAAAAA
gi|16 : atgaT---A-ACA-AACATACTAAGTTTT-ACTGAAAAAGGTTTT--GA--A-T--------TATATT--C-CTATCGTAT-GTATCCTACA--AAAGACAAACAATATAACGAC-AAAATGGAACA-CTATT--AAGTA---T--TGTTTAGT---TTA----------------TTC------------T----A-------T---------TT--------------------T---------------A----------------------------------GTTTGAA------GC-------TACATA-TGT-GTTAGCAT--GTCAT---TAA------ATA----GTA------TTca
gi|11 : gatttta-ATAGAACAAATTAAATGCT-AT--AAAA----TCG--TG--AGT--------TATACT--CACT-TTACAT-ATTCCCTACACCAAAGGCAAATAGCTTAAGAGC-AAAATATAATG-CTATTATAAATA---T--AATTGAGTGAATCA----------------TTCTG-------T-TT----A-------T---------TT--------------------TTCTTTTTTTGAGAGTA--------------G------CA-G-------ATTGATCAATAATT-ACACCA--ATTCGTAATGT-GTTATCAG--TTCAT---TAA------ATA----TTG------TTG-TT-TTA-CT----TCATCGTT---TAagcatctaattgtcttctgaagtatattatgtt
gi|13 : gagaaaacaagcacttataaggtttccagAACATTGAG--AAAAA---ATT--GA--AGTAGCCATTGTATACT--CAGT-TTAAAT-GTATCCTACATCCAATTCAAACAAAATGAAGGCAAAAATGGAATG-TTATCAGAAATAT--T--TTAC-AGTAGTTTACACGGTTTATCTTTCTTTCTGTCTT---T-TT----A-------T---------TTGGATATAAAG----------C---------------A--------------G------CA-G-------ATTGGTTAATAATT-AC--CACTActtgttgtattaatatacagttgtgtattctaaaataaaaaaaatattaaacaaa
gi|12 : ctcttgtaagttcaaaacagtctaggcatttggataacc--AAAAA---GCT--TG--AGC--------TATACT--CACT--------------------AAAAACAAATAATTTAGGA-C-AAAATGTAACA-GTATTAGAAATAAC-T--TTA--AGTACATTA----------------TCCTG-------T-TT----A-------T---------CT--------------------TTCTGTATTATAAAGCA--------------G------CA-G-------CTTGATCGATAATT-AC--CACACTACATT-TGT-GTTAGCTT--GTCAT---TGA------A-A----TTG------TTG----------GT----ATCACTTGCTATTTG----AAA-----T-TTTATCA--TG-TGTGTCTG-T-TT----CTATTATA------T-TTT------------------------TCTTGTTATATGCTTA-TACAattgccactacatg
gi|14 : AG---TCT--TG--AGT--------TATACTTTCACT-TTATAT-GTATCCTACATTAAAactgtatatttagagagaaa
gi|18 : ttttcatttattctttgaatgtatgttttcaaacaatagttttactctcttgttttataagtcttttgagagtaaagtgcaatgtactttttggctcgctagtttcatctttacaagattatgttatgctcgtcagtatctcgatctacaagaaatatattgactcgtgcagattgaaaataaaatgtctacct---------------A--------------G------TA-G-------ATTGATCAATAATTAAC--CCTAATA-GTA-TGT-GTTATCAG--TTCAT---TAG------ATA----TTG------TTGTTT-TTG-CTATTTTCATTGTT---TAAATGA---AAAAA--CT-CCTATCA--TA-TGTGTATCTT-TT----TTATAACA------T-CGTATT--A---CTA
gi|19 : gttatattggtgtttttagagcTCATCATT---TAAATG----AAAAT--TTTCCTATCA--TA-TG---ATC-C-TTTTAGCTATAATA------A-TT-ATTTTA---TTAGA--------TATATTGCTATATGCATA-TACA--AG--------TGTTTATTCTGAAAT--AAAG-CATTATCAAAAAAA
gi|21 : ttgtTG----AAAAA--CT-CTTATCA--GA-TGTGCTTCCT-TT----CTATTACA------T-----------------------------CCTGTTATATGCACA-TA--TTA--------TTATGTATTCTGAAAT--AAAT-AA-TATTGAAAAg
gi|20 : -TGTGCATC-T-GT----CTATTACA------T-GTATTT--A---CTAGA--------TCTCTTG-TGTCT-CTTGATATATCAATATACAATTGTGTATTCTGAAAT--AAAA-CATTATTAAAA
gi|11 : TGTTTTA------C-TTCATC--G---TT-----------TA-CTTGTTGTATTAATA-TACAGT----------TGTGTATTCTAAAATAAAAAA-AA-TATTAAACAAActa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AAACAACTTTTTCACCATATTGAAGCCACTTCTATTCCATGTTGTTTGCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 666666666666 444444444 3 1 111 11111111 111111 111 11111111 1111111111 222222222222222222 111 111111 22 2222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 1111 2222222222222222222222222222222 111111111
lowQualScore : 000 33 5 9 3 1 0 8 444444444444 000000000 1 0 0 1 3 2 3 777 1 6 8 2 99 6 7 5 55555555 4 777777 4 2 3 0 0 1 1 222 0 11 4 2 777 66 2 00 1 4 88888 3 0 4 3 22222222 4444444444 000000000000000000 6 555 222222 6 555 44 4 33 33 444 2 33 2 44 2 2 44 2 0 0000000000000000 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 2 555 2 0 66 3 1 1 555 888888 4 6666 888888 3 2222 33 1 666 3 88888 3 55 3 1 6 3 3 44 3333333333333333333333333333333 444444444 3 55 99999 55 4 8
lowQualScore : ... .. . . . . . . ............ ......... . . . . . . . ... . . . . .. . . . ........ . ...... . . . . . . . ... . .. . . ... .. . .. . . ..... . . . . ........ .......... .................. . ... ...... . ... .. . .. .. ... . .. . .. . . .. . . ................ ... ........................................................................................... ...... . ... . . .. . . . ... ...... . .... ...... . .... .. . ... . ..... . .. . . . . . .. ............................... ......... . .. ..... .. . .
lowQualScore : 555 88 0 8 2 0 0 8 222222222222 000000000 0 0 0 2 5 5 2 555 0 0 0 5 22 7 5 0 44444444 4 222222 4 7 7 9 1 9 0 222 1 77 4 2 888 11 9 22 0 0 33333 3 1 8 3 11111111 6666666666 111111111111111111 7 000 222222 7 444 22 0 99 77 444 5 44 5 88 9 9 22 6 8 4444444444444444 444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 9 000 9 8 22 1 0 5 444 888888 3 5555 888888 1 9999 66 0 444 6 22222 6 00 3 0 7 3 3 66 2222222222222222222222222222222 555555555 6 00 11111 00 0 0
consensus : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATAC-CC--------AAACTTTAT---------AAATGTTG-ATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A-ATA-T--TT-T------ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
Reference ( family-173 ) : NTAAAAACGTACAGTACAAATT--TTTTTATCGAATNT-ATTTTACGAATAC-C---------AAATTTTAT---------ANATGT-G-ATTAATTGAAACTGAATTATATTC---CCTTTNTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTNTGTTTTCAAA-A-ANN-T--TT-T------ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCGTCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|1 : ACAGACCAAACT--TTTTCATCGAATAT-ATTTTACGAATAC-CCCGGAAACAAAACTTTAT---------AGATGTTG-ATTAAGTGAAACTGAATTATGTTC---TTTTTCTAAATGCACAAGGGAAAC-AATTTTT---TT-TT--CTAT-AAATATTTGTTTTTTA-----TT-T--TT-T------ATTCT-TTTTCGTATGACTGTTTAAATAA---AAATTCAATAT-TTCTTATGA---TATA--CCTTTCCCAAATACACTGT-TTGGACCT-----A-TAATTTC---TTT-A--------CAAGATAAT----------GATATGTTCGTATGTAT----------CT------TGATCTATAAGAAATATAATGACTCGAGCAGATTG-AA---AAAA-----CAACAACAAGGTTTTGATA-TTTTT---AAAG--AACAAATTAAACGTTAT--CAAGA-------AG-----A-TAT--TCGCT-TAATAT-ATATCCTACATCAACGGCAAATAATATAAAGGC-AAAATGGAACA-TTATTAGAAATATATTTTTAAGCGAATTA----------------TT---CTG----T-------TT---A-------T---------CT--------------------TCCTCT----------ATTTTTGCGCTG------CAC------AATGATC-A---ATACTTACCACC-ATACAC---GAG-TTAGCAGTTTTTTTATAA------ATA----GTG------TT-GTT----TTT--CTATTTTCATCGT
gi|10 : agtaattcttcttttaattttgaaagattagaaaactcaacgaattccaatgttgatttaattaaaaaaaacttaagcagtgaataaaagcctttatgcgctctttctgaaacttaaatcggaagttcctcaaaacgataataagtattgaacatagattttaaatacagacatgagtatagatgacttgaaaatataatacaaacaaaaattcatatttgtagaagacccaaaacttaagacaccACCTAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATAT-GTATTCTACATCAAAGGCAAATAATATAAGGGC-ATAATGGAACA-TTGTTAGAAATAT--TTTTAAGTAAATTA----------------TT---CTGTTTCT-------TT---A-------T---------TT--------------------TTTGGAGC--------A----------G------CGG------ATTGATCTATATATAATTACCATT-ATACATT-TGTG-CTATCAGTTCATT---AA------ATA----CTG------TT-GTT----TTT-ACTATCTTCATCATTTATAT---G-AAAAAA---T-CCTTTAA--TA-TGTGTATC-T-C-C----------------------TCACTAA---A--------TATCTTGC---------A-AAATGCCTAAACA--A-----TTCTGTATTCTAAAAT--AAAA-AA-TATTAAAAAa
gi|11 : atga---ATAG--AACAAATTAAATGCTAT--AAAA---TCGTGAGT---TA-TAC--TCACT-TTACAT-ATTCCCTACACCAAAGGCAAATAGCTTAAGAGC-AAAATATAATG-CTATTATAAATAT--AATTGAGTGAATCA----------------TT---CTG----T-------TT---A-------T---------TT--------------------TTCTTTTTTTGAGAGTA----------G------CAG------ATTGATC-A---ATAATTACACCA-ATTCGTAATGTG-TTATCAGTTCATT---AA------ATA----TTG------TT-G-T----TTT-AC----TTCATCGTTTAca
gi|11 : gagaaaacaagcacttataaggtttccagCTTGT---------T-GTATTAATATACA--G-----TTGTGTATTCTAAAATAAAAAA-AA-TATTAAACAAActtgttgtattaatatacagttgtgtattctaaaataaaaaaaatattaaacaaa
gi|12 : gagaaaacaagcacttataaggtttccagatagaacaaattaaatgctataaaatcgtgagttatactcactttacatattccctacaccaaaggcaaatagcttaagagcaaaatataatgctattataaatataattgagtgaatcattctgtttatttttctttttttgagagtagcagattgatcaataattacaccaattcgtaatgtgttatcagttcattaaatattgttgttttacttcatcgttta--AAAAA--GCTTGAGC---TA-TAC--TCACT--------------------AAAAACAAATAATTTA-GGAC-AAAATGTAACA-GTATTAGAAATAA--CTTTAAGTACATTA----------------TC---CTG----T-------TT---A-------T---------CT--------------------TTCTGTATTATAAAGCA----------G------CAG------CTTGATC-G---ATAATTACCACA-CTACATT-TGTG-TTAGCTTGTCATT---GA------A-A----TTG------TT-GGTATCACTT-GCTATT-------------T---G-AAA------T-TTTATCA--TG-TGTGTCTG-T-T-TCTAT--TATA---T-T---TT----------------------TCTTGT---------T-ATATGCTTATACA--A-----CTGTATATTTAGAGAG--AAA
gi|13 : ---TA-TAC--TCAGT-TTAAAT-GTATCCTACATCCAATTCAAACAAAATGAAGGCAAAAATGGAATG-TTATCAGAAATAT--TTTACAGTAGTTTACACGGTTTATCTTTCTTT---CTGTCTTT-------TT---A-------T---------TTGGATATAAAG----------C---------------A----------G------CAG------ATTGGTT-A---ATAATTACCACT-A
gi|14 : ctcttgtaagttcaaaacagtctaggcatttggataaccaacattgagaaaaaattgaagtagccattgTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAACA-ATAGT--TT-T------ACTCT-CT----------TGTT----TTAT--AAGT----------CTTTTGAGAGTA-A--AGTGC----AATGTACTTT-TTGGCTCG-----C-TAGTTTCATCTTT-A--------CAAGATTAT----------GTTATGCTCGTCAGTAT----------CT------CGATCTACAAGAAATATATTGACTCGTGCAGATTG-AAAATAAAA-----TGTCTACCTAGTCTTGA-G-TTattgccactacatg
gi|14 : AG--TCTTGAGT---TA-TACTTTCACT-TTATA-TGTATCCTACATTAAAatactttcactttatatgtatcctacattaaa
gi|15 : ttttcatttattctttgaatgtatgttttcaaacaatagttttactctcttgttttataagtcttttgagagtaaagtgcaatgtactttttggctcgctagtttcatctttacaagattatgttatgctcgtcagtatctcgatctacaagaaatatattgactcgtgcagattgaaaataaaatgtctacctT-----T-TAGTTTCATATTT-A--------CAAGAAGAT----------GTAATACTCATTTGTAT----------CT------TAATCCGCAAGAAATATATTGACTCGTTCAAGTTGAAA---AAAA-----TATCTACCTTGTTTTGATG-TTTTTTAAATAA--AACAAATTAAAC-TTAT--AAAAG--TATTCAGT---TA-TAT--TCATT-TTGCA-TGTATCCTACACCGAAGGCAAATAATATAAAGGC-AGCATGGAAGA-TTATCAGAAA
gi|16 : TTTT---ATAACAAACATACTAAGTTTTACTGAAAAAGGTTTTGAAT---TA-TAT--TC-CTATCGTAT-GTATCCTACA--AAAGACAAACAATATAACGAC-AAAATGGAACA-CTATT--AAGTAT--TGTTTAGT---TTA----------------TT---C---------------T---A-------T---------TT--------------------T---------------A----------G------T---------TTGA-------------AGC-----TACATA-TGTG-TTAGCATGTCATT---AA------ATA----GTA------TT-
gi|17 : gaT-T------ACGCT-CTTTTGTAAGTTTAGCGAAATCG---AAATGTTTTAT-TTCTTATAA---TATACCACT------AATATACTTTGTTGACTC------T-TACGTTCGACTTT-G--------CAAGATA------------------TTCATATGTAT----------A-------TGATCTACAATAAATATATTGACCTGTAGAGAATG-CA---TTAA----------ACTTAG-TTTGATagcatctaattgtcttctgaagtatattatgtt
gi|18 : ---------------A----------G------TAG------ATTGATC-A---ATAATTAACCCTAATA-GTA-TGTG-TTATCAGTTCATT---AG------ATA----TTG------TT-GTT----TTT-GCTATTTTCATTGTTTAAAT---GAAAAAAC---T-CCTATCA--TA-TGTGTATCTT-T-TTTAT--AACA---T-C---GTATTACTA
gi|19 : gttatattggtgtttttagagcTTCATCATTTAAAT---G-AAAATT---TTCCTATCA--TA-TGATCCTT-T-TAGCTATAATA-A---T-T---ATTTTATTAG---A--------TATATTGC---------T-ATATGCATATACA--A-----GTGTTTATTCTGAAAT--AAAG-CATTATCAAAAAAA
gi|2 : ttgTAAAAACGTACAGTACAAATT--TTTTTATCGAATAT-ACTTTACGAATA--C---------AAATTTTAT---------ACATGTGG-ATTAATTGAAACTGGGTTAAATTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--TGTT-GAATGTATGTTTTCAAA-A-ATA-T--TT-T------ACTCT-CTTTCCTAAATCTGTTGAAAGCA---AAGTGCAATAG-GTGTAATGA---TATA--TCTCCCCAAAATAAACTAT-TTAACGCT-----T-TAATTTCATCTTT-AAAAGATTTAAAGATAAT----------GTTATATTCGCATGTAT----------TG------TGATCTACAAGAAGTGTATTGACTCGAGCAGATTGAAA---AAAA-----TGTCTTCCTAGCTTTAATG-TCTTT---ATAA--AGCAAATTAAAC-TTAT---AAAA--TTTTGAGC---TA-TAC--TTACT-GTATA-TGTATCCTACATCAAAAGTAAATAATGTAAGTGC-AAAATGGAATATTTATTATAAATAT--TTTTGAGTAAATTA----------------TT---CTT----T-------TT---ATCTGTCTT---------TT--------------------T---------------A----------AGAGTATCGG------ATTGATT-A---ATAATTACAATT-TTACATT-TGTG-TTATCAGTTCATT---AAAATTTTATA----TTG-------T-GTT----TTTAGCTATTTTCATCGTGTAAAT---G-AAAATC---T-CATATCA--TA-TGTGAATC-T-T-TCTAT--TACA---T-T---TGATTTCTTA---A--------CATCTTGT---------T-TTAGGCATAAATA--A-----TTATGTATTCTGAAAT---AAA-AA-TATTAAAg
gi|20 : atagatgaccattaag-TGTGCATC-T-G-TCTAT--TACA---T-G---TATTTACTAG---A--------TCTCTTGTGTCTCTTGAT-ATATCAATATACA--A-----TTGTGTATTCTGAAAT--AAAA-CATTATTAAAA
gi|21 : T---G-AAAAAC---T-CTTATCA--GA-TGTGCTTCCT-T-TCTAT--TACA---T------------------------------CCTGT---------T-ATATGCACATATT--A-----TTATGTATTCTGAAAT--AAAT-AA-TATTGAAAActa
gi|3 : TAAAA---TACAGTATTAATTAATGTCCAACG--TTT-ATTTTAAGAATAC-T---------AAACTTTAT---------AAATGT-GGATTTATTGAAACCGAATTGTGCTC---CTTTTGTAATAACACAAGAGAAAC-AATTTTTCATTGATT--CGTT-GAATGTATGTTTTCAAA-A-ATT-T--TT-TT-----ACATT-CTTTCATAAGTCTGTTGAAAGCA---AAGTGCAATAT-TTCTTATGA---TATA--ACACCCCAAAATGTACTAT-TTGGCCCT-----T-TAATTTCATCCTT-A--------CAAGATAAT----------GTTATGTTTGCATATAT----------CT------TGATCTACAAGAAATGTATTGACTCATGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TCTTA---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTAAAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGAAC-AAAATGGTACA-TTATTCGAAATAT--TTATGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATGTATC-A---ATAATTACCATT-ATACATA-TGTG-TTATCAGTTCATT---AA------GTA----TTG------TT-GTT----TTT-ACTGTCATCATCATTTATAT---G-AAAACC---T-CCTATAA--TA-TGTGCATC-T-T-TCTAT--TATA---T-T---TCATTACTAC---A--------TATCTTGT---------T-GTATGCATGTACATTAAAATTTTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|4 : aTTTTCACA-A-G------TT-T------ACTCTACTTTGATAGGCCA--TAAATTTATACAAGGGCAG-ATCTTCT------------------CCCAAAATGTACAAT-TTTGCCTT-----T-AAAGTTCGTCTTT-A--------CGAGATAAT----------GTTATGTTCGTATGTAT----------CT------GGATCTGCAGGATATATGTGGACTAGAGCAGATTG-AAT--AAAATTAATTATCTACCTAGTTTTAATGTTTTTT---ATAG--AACCAATTAAACGTTAT---ACAA--TATTGA------A-TA----------TATA-TGT----------AAAGACAA----------------AACGGAACA-TTATTAGAAATGC--TCTTTATT---TT-----------------TT---CTA----TA------TTTCAG-------T---------TT--------------------TGATC-----------A----------A------CAG------AATGAAT-A---CTAATTACCACT-ATACATG-TGTG---AGC-TTTTATT---AA------ATATGATTTGTGTGACTT-GTG----TTT-GCTATTTTCACCGTTAAAATGGGG-AAAAACAAGT-CTTATTA--TA-TGTGTCTC-CGT-TTTAT--AACA---TATACGTTATATCTAA---ATAATTTTTTATCCTGT---------TGAT-TGCATATAGT--A-----TTGTGTATTCTAAAAT--AAAT-GA-TATCAAAAACAAca
gi|5 : TAA-AACGGAATAAAAAGGAATCTTTAAAGTATTAGCTTTAGAATAT-TACTTTCAAA-ATAAC-T--ATATGGAAAAACTC--CTATCACA----TGTTGAAAATA---AAGTGCAACAT-TTCTAATGA---TATA--ACTCTTTAAGATGTGCTAT-TTGGCCCT-----T-AAAGTTCATCTTT-A--------CAAGATAATATTAAATTATGTTATGTTCATATGTATATGTATATGTTT------TCATTTACAAAGAATGAATTGACTCGTGAAGATTA-AA---AA--------GTCTACCCAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTAAGT---TA-TAC--TCACT-TTATA-TGCAACCTACATCAAAGGCAAACAATATAAAGGT-AAAATTGAAAA-TTATTAAAAGTAT--TTTTGGGTAAATTA----------------TA---CTG----T-------TT---A-------T---------CTTACTCTGTTTTAGCTTGGAGT---------------A----------G------CAGA-----ATTAA-C-A---ATAATTACCACT-TTAC--A-TGTG-TTAACATTTCATA---AA------ATA----TTT------TTGGTTTTG-TTT-GCTATTTTC
gi|6 : g-A-ATA-T--TT-T------ACTCT-CTTTTGTAAGTCTTTTAAAAGTA---AAGTATACTAT-TTCTTATAC---TATA--ACTCCCCAAACTGTACTGT-TTGGCCCTAGGCTTATAGTTTCGTCATT-A--------CAAGATAAT----------GTTATATTCGTATGTAT----------CT------TGATCTACAAGAAATGTATCAACCTTTGCAAATTG-AAGAAAAAA-----AGTCTTCCTAGTTTTGATGTTTTTT---ATAA--AATCAATTTAACATTAT--AAAAA--TCTTGAAT---AA-TAC--TCACT-TTATA-TGTATCTTACATCGAAGGCAAGTAATATAAAGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------TCTCTCTCTGTT--------------------TTAGAGC---------A----------G------CAG------ATTGGTC-A---ATTATTACCTCT-ATAC--A-TGTG-TTAACATTTCATT---AA------TAA----TTG------TT-GTA----TTA-TTTGTTTTCATTGTTTCAGT---A-GATATC---T-TCTATCATTTATTATGCCCC-T-T-TCTAT--TACA---C-T---TTACTA
gi|7 : ACGTACTTC-TTGGCCCT-----T-TAGTTTTATATTT-A--------CA-TATATT----------GTTATGCCCGTATGTAT----------CTAGATCTTGATCTACAAGAAATATATTGACTCGTGTAGATTG-AA---AAAA-----TCTCTGCATA-----------TTTT---ATAG--AACAAATTAAACTCTAT--AAAAG--TCTTAAGT---TA-TAC--TCACT-TTATAT-GTATCCTACATCAAAAGTAAATGATATAAGGAC-AAAATTGAACA-TTCTTAGA----T--TGTTTAATAAATGA----------------TA---CTG----T-------TT---G-------TCTTTATCTGTT--------------------T---------------A----------G------AAGTTGCATATTTGTC-A---ATTATTACCACT-ATACATG-TATAATTGTTGGTT--TT---CA------A--------G------TT-GTT----T---GTTATTTTCATCCTTTAAAT---G-TGAAAC---T-CCTACCA--TA-TGTGCCTC-C-T-TCCAT--TACACGTT-T---TTTTTTTTAAAATA--------TATATTGT---------T-ATATGCATATACA--G-----TTGTGTAGTCTG-AAT--AAAACAA-TATTAAAAAga
gi|8 : actgatattaagtttcaaattatatT-----T-TAATTTCATCTTTTA--------CAAAATAAT----------GTTTTGTTCGCATGTAT----------C---------A---ACAAGAAATA-----ACTTGTGCAGATTG-AA---AAAAA----TATCTATCTAGTTTTGAGA-TCTTT---ATAG--A-CAAATTAAACGTTAA--ACAAA--TCTTGAATGAATAATAA--TCACT-GTATGT-GTATCCTACATCAAAAGCAATTACTATAAGGTC-AAAATTGAACA-TTATTAGAAATAT--GTTTATGTAAATTA----------------TTGTTTTG----TCTTTCTTTT---A-------T---------TTAGAG----------------T---------------A----------G------CAT------AATGATC-A---ATAATTGCCACT-GTACATA-TGTG-TTATCATTTCATT---AA------A-A----TTG------TT-GTT----CT--GCTATTTTCATTGTTT---T---G-AAAA-C---T-CCTATCA--TA-TATGCATC-T-T-TTTAT--TACA---T-T---GTACTACTAA---A--------TATCTTGC---------T-ATTTGCATATACA--A-----TTGTTTATTCTGAAAT--AAAA-A-----TAAAAAAca
gi|9 : atCAAATT--TTTTAA---AATTTTGTTTTA--AATATGCTG-------AAATTTTATTTTTCTTACAAATTTTG-TTTGAAAGAAA-TGAA--ATACTCTGACCCCAATAATAACACAAAAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTTTGTTTTCAAA-A-AAA-TATTT-T------ACCCT-CTTTCAGAAGTCTGTTGAAAATA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCAAAGATGTAGTAT-TTGGCCCT-----A-TAGTTTCATTTTT-A--------CATTATAAT----------GTTATGTTCGTATGTAT----------CT------TAATCTACAAGAAATATATTGACTCATGTAGATTG-AA---AATA-----TGTTTACCTAGTTTTGATG-TTTTT---ATAG--AACATAATAAACATTAT--AAAAA--TATTGAGT-----------TCACT-TTAT-TTGTATCCTATATCAAAGGCAca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAACAACTTTTTCACCATATTGAAGCCACTTCTATTCCATGTTGTTTGCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 7777777777 444444444 111 1111 11111 111 11111111 1111111111 222222222222222222 111 111111 22 2222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 1111 2222222222222222222222222222222 111111111
lowQualScore : 000 33 0 9 3 1 0 8 1111111111 000000000 0 3 1 1 2 3 777 6 8 2 99 6 7 5 4444 88 55555 4 2 3 0 0 1 1 222 0 11 4 2 777 66 2 00 1 4 88888 3 0 3 22222222 4444444444 000000000000000000 6 555 222222 6 555 44 4 33 33 444 2 33 2 44 2 2 44 2 0 0000000000000000 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 2 555 2 0 66 3 1 1 555 888888 4 6666 888888 3 2222 33 1 666 3 88888 3 55 3 1 6 3 3 44 3333333333333333333333333333333 444444444 3 55 99999 55 4 8
lowQualScore : ... .. . . . . . . .......... ......... . . . . . . ... . . . .. . . . .... .. ..... . . . . . . . ... . .. . . ... .. . .. . . ..... . . . ........ .......... .................. . ... ...... . ... .. . .. .. ... . .. . .. . . .. . . ................ ... ........................................................................................... ...... . ... . . .. . . . ... ...... . .... ...... . .... .. . ... . ..... . .. . . . . . .. ............................... ......... . .. ..... .. . .
lowQualScore : 555 88 2 8 2 0 0 8 5555555555 000000000 8 0 2 0 5 2 555 0 0 5 22 7 8 0 6666 66 66666 4 7 7 9 1 9 0 222 1 77 4 2 888 11 9 22 0 0 33333 3 1 3 11111111 6666666666 111111111111111111 7 000 222222 7 444 22 0 99 77 444 5 44 5 88 9 9 22 6 8 4444444444444444 444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 9 000 9 8 22 1 0 5 444 888888 3 5555 888888 1 9999 66 0 444 6 22222 6 00 3 0 7 3 3 66 2222222222222222222222222222222 555555555 6 00 11111 00 0 0
consensus : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
Reference ( family-173 ) : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACCC--------AAACTTTAT---------AAATGTTGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|1 : ACAGACCAAACT--TTTTCATCGAATAT-ATTTTACGAATACCCCGGAAACAAAACTTTAT---------AGATGTTGATTAAGTGAAACTGAATTATGTTC---TTTTTCTAAATGCACAAGGGAAAC-AATTTTT---TT-TT--CTAT-AAATATTTGTTTTTTA-------TT-TTTT-----ATTCT-TTTTCGTATGACTGTTTAAATAA---AAATTCAATAT-TTCTTATGA---TATA--CCTTTCCCAAATACACTGT-TTGGACCT-----A-TAATTTC---TTT-A--------CAAGATAAT----------GATATGTTCGTATGTAT----------CT------TGATCTATAAGAAATATAATGACTCGAGCAGATTG-AA---AAAA-----CAACAACAAGGTTTTGATA-TTTTT---AAAG--AACAAATTAAACGTTAT--CAAGA-------AG-----A-TAT--TCGCT-TAATAT-ATATCCTACATCAACGGCAAATAATATAAAGGC-AAAATGGAACA-TTATTAGAAATATATTTTTAAGCGAATTA----------------TT---CTG----T-------TT---A-------T---------CT--------------------TCCTCT----------ATTTTTGCGCTG------CAC------AATGATC-A---ATACTTACCACC-ATACAC---GAG-TTAGCAGTTTTTTTATAA------ATA----GTG------TT-GTT----TTT--CTATTTTCATCGT
gi|10 : agtaattcttcttttaattttgaaagattagaaaactcaacgaattccaatgttgatttaattaaaaaaaacttaagcagtgaataaaagcctttatgcgctctttctgaaacttaaatcggaagttcctcaaaacgataataagtattgaacatagattttaaatacagacatgagtatagatgacttgaaaatataatacaaacaaaaattcatatttgtagaagacccaaaacttaagacaccACCTAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATAT-GTATTCTACATCAAAGGCAAATAATATAAGGGC-ATAATGGAACA-TTGTTAGAAATAT--TTTTAAGTAAATTA----------------TT---CTGTTTCT-------TT---A-------T---------TT--------------------TTTGGAGC--------A----------G------CGG------ATTGATCTATATATAATTACCATT-ATACATT-TGTG-CTATCAGTTCATT---AA------ATA----CTG------TT-GTT----TTT-ACTATCTTCATCATTTATAT---G-AAAAAA---T-CCTTTAA--TA-TGTGTATC-T-C-C----------------------TCACTAA---A--------TATCTTGC---------A-AAATGCCTAAACA--A-----TTCTGTATTCTAAAAT--AAAA-AA-TATTAAAAAa
gi|11 : atga---ATAG--AACAAATTAAATGCTAT--AAAA---TCGTGAGT---TA-TAC--TCACT-TTACAT-ATTCCCTACACCAAAGGCAAATAGCTTAAGAGC-AAAATATAATG-CTATTATAAATAT--AATTGAGTGAATCA----------------TT---CTG----T-------TT---A-------T---------TT--------------------TTCTTTTTTTGAGAGTA----------G------CAG------ATTGATC-A---ATAATTACACCA-ATTCGTAATGTG-TTATCAGTTCATT---AA------ATA----TTG------TT-G-T----TTT-AC----TTCATCGTTTAca
gi|11 : gagaaaacaagcacttataaggtttccagCTTGT---------T-GTATTAATATACA--G-----TTGTGTATTCTAAAATAAAAAA-AA-TATTAAACAAActtgttgtattaatatacagttgtgtattctaaaataaaaaaaatattaaacaaa
gi|12 : gagaaaacaagcacttataaggtttccagatagaacaaattaaatgctataaaatcgtgagttatactcactttacatattccctacaccaaaggcaaatagcttaagagcaaaatataatgctattataaatataattgagtgaatcattctgtttatttttctttttttgagagtagcagattgatcaataattacaccaattcgtaatgtgttatcagttcattaaatattgttgttttacttcatcgttta--AAAAA--GCTTGAGC---TA-TAC--TCACT--------------------AAAAACAAATAATTTA-GGAC-AAAATGTAACA-GTATTAGAAATAA--CTTTAAGTACATTA----------------TC---CTG----T-------TT---A-------T---------CT--------------------TTCTGTATTATAAAGCA----------G------CAG------CTTGATC-G---ATAATTACCACA-CTACATT-TGTG-TTAGCTTGTCATT---GA------A-A----TTG------TT-GGTATCACTT-GCTATT-------------T---G-AAA------T-TTTATCA--TG-TGTGTCTG-T-T-TCTAT--TATA---T-T---TT----------------------TCTTGT---------T-ATATGCTTATACA--A-----CTGTATATTTAGAGAG--AAA
gi|13 : ---TA-TAC--TCAGT-TTAAAT-GTATCCTACATCCAATTCAAACAAAATGAAGGCAAAAATGGAATG-TTATCAGAAATAT--TTTACAGTAGTTTACACGGTTTATCTTTCTTT---CTGTCTTT-------TT---A-------T---------TTGGATATAAAG----------C---------------A----------G------CAG------ATTGGTT-A---ATAATTACCACT-A
gi|14 : ctcttgtaagttcaaaacagtctaggcatttggataaccaacattgagaaaaaattgaagtagccattgTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAACA--A-TAGTTTT-----ACTCT-CT----------TGTT----TTAT--AAGT----------CTTTTGAGAGTA-A--AGTGC----AATGTACTTT-TTGGCTCG-----C-TAGTTTCATCTTT-A--------CAAGATTAT----------GTTATGCTCGTCAGTAT----------CT------CGATCTACAAGAAATATATTGACTCGTGCAGATTG-AAAATAAAA-----TGTCTACCTAGTCTTGA-G-TTattgccactacatg
gi|14 : AG--TCTTGAGT---TA-TACTTTCACT-TTATA-TGTATCCTACATTAAAatactttcactttatatgtatcctacattaaa
gi|15 : ttttcatttattctttgaatgtatgttttcaaacaatagttttactctcttgttttataagtcttttgagagtaaagtgcaatgtactttttggctcgctagtttcatctttacaagattatgttatgctcgtcagtatctcgatctacaagaaatatattgactcgtgcagattgaaaataaaatgtctacctT-----T-TAGTTTCATATTT-A--------CAAGAAGAT----------GTAATACTCATTTGTAT----------CT------TAATCCGCAAGAAATATATTGACTCGTTCAAGTTGAAA---AAAA-----TATCTACCTTGTTTTGATG-TTTTTTAAATAA--AACAAATTAAAC-TTAT--AAAAG--TATTCAGT---TA-TAT--TCATT-TTGCA-TGTATCCTACACCGAAGGCAAATAATATAAAGGC-AGCATGGAAGA-TTATCAGAAA
gi|16 : TTTT---ATAACAAACATACTAAGTTTTACTGAAAAAGGTTTTGAAT---TA-TAT--TC-CTATCGTAT-GTATCCTACA--AAAGACAAACAATATAACGAC-AAAATGGAACA-CTATT--AAGTAT--TGTTTAGT---TTA----------------TT---C---------------T---A-------T---------TT--------------------T---------------A----------G------T---------TTGA-------------AGC-----TACATA-TGTG-TTAGCATGTCATT---AA------ATA----GTA------TT-
gi|17 : gaTT-----ACGCT-CTTTTGTAAGTTTAGCGAAATCG---AAATGTTTTAT-TTCTTATAA---TATACCACT------AATATACTTTGTTGACTC------T-TACGTTCGACTTT-G--------CAAGATA------------------TTCATATGTAT----------A-------TGATCTACAATAAATATATTGACCTGTAGAGAATG-CA---TTAA----------ACTTAG-TTTGATagcatctaattgtcttctgaagtatattatgtt
gi|18 : ---------------A----------G------TAG------ATTGATC-A---ATAATTAACCCTAATA-GTA-TGTG-TTATCAGTTCATT---AG------ATA----TTG------TT-GTT----TTT-GCTATTTTCATTGTTTAAAT---GAAAAAAC---T-CCTATCA--TA-TGTGTATCTT-T-TTTAT--AACA---T-C---GTATTACTA
gi|19 : gttatattggtgtttttagagcTTCATCATTTAAAT---G-AAAATT---TTCCTATCA--TA-TGATCCTT-T-TAGCTATAATA-A---T-T---ATTTTATTAG---A--------TATATTGC---------T-ATATGCATATACA--A-----GTGTTTATTCTGAAAT--AAAG-CATTATCAAAAAAA
gi|2 : ttgTAAAAACGTACAGTACAAATT--TTTTTATCGAATAT-ACTTTACGAATAC----------AAATTTTAT---------ACATGTGGATTAATTGAAACTGGGTTAAATTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--TGTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCCTAAATCTGTTGAAAGCA---AAGTGCAATAG-GTGTAATGA---TATA--TCTCCCCAAAATAAACTAT-TTAACGCT-----T-TAATTTCATCTTT-AAAAGATTTAAAGATAAT----------GTTATATTCGCATGTAT----------TG------TGATCTACAAGAAGTGTATTGACTCGAGCAGATTGAAA---AAAA-----TGTCTTCCTAGCTTTAATG-TCTTT---ATAA--AGCAAATTAAAC-TTAT---AAAA--TTTTGAGC---TA-TAC--TTACT-GTATA-TGTATCCTACATCAAAAGTAAATAATGTAAGTGC-AAAATGGAATATTTATTATAAATAT--TTTTGAGTAAATTA----------------TT---CTT----T-------TT---ATCTGTCTT---------TT--------------------T---------------A----------AGAGTATCGG------ATTGATT-A---ATAATTACAATT-TTACATT-TGTG-TTATCAGTTCATT---AAAATTTTATA----TTG-------T-GTT----TTTAGCTATTTTCATCGTGTAAAT---G-AAAATC---T-CATATCA--TA-TGTGAATC-T-T-TCTAT--TACA---T-T---TGATTTCTTA---A--------CATCTTGT---------T-TTAGGCATAAATA--A-----TTATGTATTCTGAAAT---AAA-AA-TATTAAAg
gi|20 : atagatgaccattaag-TGTGCATC-T-G-TCTAT--TACA---T-G---TATTTACTAG---A--------TCTCTTGTGTCTCTTGAT-ATATCAATATACA--A-----TTGTGTATTCTGAAAT--AAAA-CATTATTAAAA
gi|21 : T---G-AAAAAC---T-CTTATCA--GA-TGTGCTTCCT-T-TCTAT--TACA---T------------------------------CCTGT---------T-ATATGCACATATT--A-----TTATGTATTCTGAAAT--AAAT-AA-TATTGAAAActa
gi|3 : TAAAA---TACAGTATTAATTAATGTCCAACG--TTT-ATTTTAAGAATACT---------AAACTTTAT---------AAATGTGGATTTATTGAAACCGAATTGTGCTC---CTTTTGTAATAACACAAGAGAAAC-AATTTTTCATTGATT--CGTT-GAATGTATGTTTTCAAA-A--A-TT-TTTTT----ACATT-CTTTCATAAGTCTGTTGAAAGCA---AAGTGCAATAT-TTCTTATGA---TATA--ACACCCCAAAATGTACTAT-TTGGCCCT-----T-TAATTTCATCCTT-A--------CAAGATAAT----------GTTATGTTTGCATATAT----------CT------TGATCTACAAGAAATGTATTGACTCATGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TCTTA---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTAAAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGAAC-AAAATGGTACA-TTATTCGAAATAT--TTATGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATGTATC-A---ATAATTACCATT-ATACATA-TGTG-TTATCAGTTCATT---AA------GTA----TTG------TT-GTT----TTT-ACTGTCATCATCATTTATAT---G-AAAACC---T-CCTATAA--TA-TGTGCATC-T-T-TCTAT--TATA---T-T---TCATTACTAC---A--------TATCTTGT---------T-GTATGCATGTACATTAAAATTTTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|4 : aTTTTCACA-A--G-T----TT-----ACTCTACTTTGATAGGCCA--TAAATTTATACAAGGGCAG-ATCTTCT------------------CCCAAAATGTACAAT-TTTGCCTT-----T-AAAGTTCGTCTTT-A--------CGAGATAAT----------GTTATGTTCGTATGTAT----------CT------GGATCTGCAGGATATATGTGGACTAGAGCAGATTG-AAT--AAAATTAATTATCTACCTAGTTTTAATGTTTTTT---ATAG--AACCAATTAAACGTTAT---ACAA--TATTGA------A-TA----------TATA-TGT----------AAAGACAA----------------AACGGAACA-TTATTAGAAATGC--TCTTTATT---TT-----------------TT---CTA----TA------TTTCAG-------T---------TT--------------------TGATC-----------A----------A------CAG------AATGAAT-A---CTAATTACCACT-ATACATG-TGTG---AGC-TTTTATT---AA------ATATGATTTGTGTGACTT-GTG----TTT-GCTATTTTCACCGTTAAAATGGGG-AAAAACAAGT-CTTATTA--TA-TGTGTCTC-CGT-TTTAT--AACA---TATACGTTATATCTAA---ATAATTTTTTATCCTGT---------TGAT-TGCATATAGT--A-----TTGTGTATTCTAAAAT--AAAT-GA-TATCAAAAACAAca
gi|5 : GTAA-AACGGAATAAAAAGGAATCTTTAAAGTATTAGCTTTAGAATAT-TACTTTCAAA-ATAACTA-TATGGAAAAACTC--CTATCACA----TGTTGAAAATA---AAGTGCAACAT-TTCTAATGA---TATA--ACTCTTTAAGATGTGCTAT-TTGGCCCT-----T-AAAGTTCATCTTT-A--------CAAGATAATATTAAATTATGTTATGTTCATATGTATATGTATATGTTT------TCATTTACAAAGAATGAATTGACTCGTGAAGATTA-AA---AA--------GTCTACCCAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTAAGT---TA-TAC--TCACT-TTATA-TGCAACCTACATCAAAGGCAAACAATATAAAGGT-AAAATTGAAAA-TTATTAAAAGTAT--TTTTGGGTAAATTA----------------TA---CTG----T-------TT---A-------T---------CTTACTCTGTTTTAGCTTGGAGT---------------A----------G------CAGA-----ATTAA-C-A---ATAATTACCACT-TTAC--A-TGTG-TTAACATTTCATA---AA------ATA----TTT------TTGGTTTTG-TTT-GCTATTTTC
gi|6 : -A--A-TA-TTTT-----ACTCT-CTTTTGTAAGTCTTTTAAAAGTA---AAGTATACTAT-TTCTTATAC---TATA--ACTCCCCAAACTGTACTGT-TTGGCCCTAGGCTTATAGTTTCGTCATT-A--------CAAGATAAT----------GTTATATTCGTATGTAT----------CT------TGATCTACAAGAAATGTATCAACCTTTGCAAATTG-AAGAAAAAA-----AGTCTTCCTAGTTTTGATGTTTTTT---ATAA--AATCAATTTAACATTAT--AAAAA--TCTTGAAT---AA-TAC--TCACT-TTATA-TGTATCTTACATCGAAGGCAAGTAATATAAAGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------TCTCTCTCTGTT--------------------TTAGAGC---------A----------G------CAG------ATTGGTC-A---ATTATTACCTCT-ATAC--A-TGTG-TTAACATTTCATT---AA------TAA----TTG------TT-GTA----TTA-TTTGTTTTCATTGTTTCAGT---A-GATATC---T-TCTATCATTTATTATGCCCC-T-T-TCTAT--TACA---C-T---TTACTA
gi|7 : ACGTACTTC-TTGGCCCT-----T-TAGTTTTATATTT-A--------CA-TATATT----------GTTATGCCCGTATGTAT----------CTAGATCTTGATCTACAAGAAATATATTGACTCGTGTAGATTG-AA---AAAA-----TCTCTGCATA-----------TTTT---ATAG--AACAAATTAAACTCTAT--AAAAG--TCTTAAGT---TA-TAC--TCACT-TTATAT-GTATCCTACATCAAAAGTAAATGATATAAGGAC-AAAATTGAACA-TTCTTAGA----T--TGTTTAATAAATGA----------------TA---CTG----T-------TT---G-------TCTTTATCTGTT--------------------T---------------A----------G------AAGTTGCATATTTGTC-A---ATTATTACCACT-ATACATG-TATAATTGTTGGTT--TT---CA------A--------G------TT-GTT----T---GTTATTTTCATCCTTTAAAT---G-TGAAAC---T-CCTACCA--TA-TGTGCCTC-C-T-TCCAT--TACACGTT-T---TTTTTTTTAAAATA--------TATATTGT---------T-ATATGCATATACA--G-----TTGTGTAGTCTG-AAT--AAAACAA-TATTAAAAAga
gi|8 : actgatattaagtttcaaattatatT-----T-TAATTTCATCTTTTA--------CAAAATAAT----------GTTTTGTTCGCATGTAT----------C---------A---ACAAGAAATA-----ACTTGTGCAGATTG-AA---AAAAA----TATCTATCTAGTTTTGAGA-TCTTT---ATAG--A-CAAATTAAACGTTAA--ACAAA--TCTTGAATGAATAATAA--TCACT-GTATGT-GTATCCTACATCAAAAGCAATTACTATAAGGTC-AAAATTGAACA-TTATTAGAAATAT--GTTTATGTAAATTA----------------TTGTTTTG----TCTTTCTTTT---A-------T---------TTAGAG----------------T---------------A----------G------CAT------AATGATC-A---ATAATTGCCACT-GTACATA-TGTG-TTATCATTTCATT---AA------A-A----TTG------TT-GTT----CT--GCTATTTTCATTGTTT---T---G-AAAA-C---T-CCTATCA--TA-TATGCATC-T-T-TTTAT--TACA---T-T---GTACTACTAA---A--------TATCTTGC---------T-ATTTGCATATACA--A-----TTGTTTATTCTGAAAT--AAAA-A-----TAAAAAAca
gi|9 : atCAAATT--TTTTAA---AATTTTGTTTTA--AATATGCTG------AAATTTTATTTTTCTTACAAATTTTGTTTGAAAGAAA-TGAA--ATACTCTGACCCCAATAATAACACAAAAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTTTGTTTTCAAA-AAAA-TA-TTTT-----ACCCT-CTTTCAGAAGTCTGTTGAAAATA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCAAAGATGTAGTAT-TTGGCCCT-----A-TAGTTTCATTTTT-A--------CATTATAAT----------GTTATGTTCGTATGTAT----------CT------TAATCTACAAGAAATATATTGACTCATGTAGATTG-AA---AATA-----TGTTTACCTAGTTTTGATG-TTTTT---ATAG--AACATAATAAACATTAT--AAAAA--TATTGAGT-----------TCACT-TTAT-TTGTATCCTATATCAAAGGCAca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAACAACTTTTTCACCATATTGAAGCCACTTCTATTCCATGTTGTTTGCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 5555555555 444444444 111 1111 11111 111 11111111 1111111111 222222222222222222 111 111111 22 2222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 1111 2222222222222222222222222222222 111111111
lowQualScore : 000 33 0 9 3 1 0 8 7777777777 000000000 0 1 1 1 2 3 777 6 8 2 99 6 7 5 4444 88 55555 4 2 3 0 0 1 1 222 0 11 4 2 777 66 2 00 1 4 88888 3 0 3 22222222 4444444444 000000000000000000 6 555 222222 6 555 44 4 33 33 444 2 33 2 44 2 2 44 2 0 0000000000000000 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 2 555 2 0 66 3 1 1 555 888888 4 6666 888888 3 2222 33 1 666 3 88888 3 55 3 1 6 3 3 44 3333333333333333333333333333333 444444444 3 55 99999 55 4 8
lowQualScore : ... .. . . . . . . .......... ......... . . . . . . ... . . . .. . . . .... .. ..... . . . . . . . ... . .. . . ... .. . .. . . ..... . . . ........ .......... .................. . ... ...... . ... .. . .. .. ... . .. . .. . . .. . . ................ ... ........................................................................................... ...... . ... . . .. . . . ... ...... . .... ...... . .... .. . ... . ..... . .. . . . . . .. ............................... ......... . .. ..... .. . .
lowQualScore : 555 88 2 8 2 0 0 8 2222222222 000000000 8 0 2 0 5 2 555 0 0 5 22 7 8 0 6666 66 66666 4 7 7 9 1 9 0 222 1 77 4 2 888 11 9 22 0 0 33333 3 1 3 11111111 6666666666 111111111111111111 7 000 222222 7 444 22 0 99 77 444 5 44 5 88 9 9 22 6 8 4444444444444444 444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 9 000 9 8 22 1 0 5 444 888888 3 5555 888888 1 9999 66 0 444 6 22222 6 00 3 0 7 3 3 66 2222222222222222222222222222222 555555555 6 00 11111 00 0 0
consensus : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
Reference ( family-173 ) : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|1 : ACAGACCAAACT--TTTTCATCGAATAT-ATTTTACGAATACCCCGGAAACAAAACTTTAT---------AGATGTTGATTAAGTGAAACTGAATTATGTTC---TTTTTCTAAATGCACAAGGGAAAC-AATTTTT---TT-TT--CTAT-AAATATTTGTTTTTTA-------TT-TTTT-----ATTCT-TTTTCGTATGACTGTTTAAATAA---AAATTCAATAT-TTCTTATGA---TATA--CCTTTCCCAAATACACTGT-TTGGACCT-----A-TAATTTC---TTT-A--------CAAGATAAT----------GATATGTTCGTATGTAT----------CT------TGATCTATAAGAAATATAATGACTCGAGCAGATTG-AA---AAAA-----CAACAACAAGGTTTTGATA-TTTTT---AAAG--AACAAATTAAACGTTAT--CAAGA-------AG-----A-TAT--TCGCT-TAATAT-ATATCCTACATCAACGGCAAATAATATAAAGGC-AAAATGGAACA-TTATTAGAAATATATTTTTAAGCGAATTA----------------TT---CTG----T-------TT---A-------T---------CT--------------------TCCTCT----------ATTTTTGCGCTG------CAC------AATGATC-A---ATACTTACCACC-ATACAC---GAG-TTAGCAGTTTTTTTATAA------ATA----GTG------TT-GTT----TTT--CTATTTTCATCGT
gi|10 : agtaattcttcttttaattttgaaagattagaaaactcaacgaattccaatgttgatttaattaaaaaaaacttaagcagtgaataaaagcctttatgcgctctttctgaaacttaaatcggaagttcctcaaaacgataataagtattgaacatagattttaaatacagacatgagtatagatgacttgaaaatataatacaaacaaaaattcatatttgtagaagacccaaaacttaagacaccACCTAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATAT-GTATTCTACATCAAAGGCAAATAATATAAGGGC-ATAATGGAACA-TTGTTAGAAATAT--TTTTAAGTAAATTA----------------TT---CTGTTTCT-------TT---A-------T---------TT--------------------TTTGGAGC--------A----------G------CGG------ATTGATCTATATATAATTACCATT-ATACATT-TGTG-CTATCAGTTCATT---AA------ATA----CTG------TT-GTT----TTT-ACTATCTTCATCATTTATAT---G-AAAAAA---T-CCTTTAA--TA-TGTGTATC-T-C-C----------------------TCACTAA---A--------TATCTTGC---------A-AAATGCCTAAACA--A-----TTCTGTATTCTAAAAT--AAAA-AA-TATTAAAAAa
gi|11 : atga---ATAG--AACAAATTAAATGCTAT--AAAA---TCGTGAGT---TA-TAC--TCACT-TTACAT-ATTCCCTACACCAAAGGCAAATAGCTTAAGAGC-AAAATATAATG-CTATTATAAATAT--AATTGAGTGAATCA----------------TT---CTG----T-------TT---A-------T---------TT--------------------TTCTTTTTTTGAGAGTA----------G------CAG------ATTGATC-A---ATAATTACACCA-ATTCGTAATGTG-TTATCAGTTCATT---AA------ATA----TTG------TT-G-T----TTT-AC----TTCATCGTTTAca
gi|11 : gagaaaacaagcacttataaggtttccagCTTGT---------T-GTATTAATATACA--G-----TTGTGTATTCTAAAATAAAAAA-AA-TATTAAACAAActtgttgtattaatatacagttgtgtattctaaaataaaaaaaatattaaacaaa
gi|12 : gagaaaacaagcacttataaggtttccagatagaacaaattaaatgctataaaatcgtgagttatactcactttacatattccctacaccaaaggcaaatagcttaagagcaaaatataatgctattataaatataattgagtgaatcattctgtttatttttctttttttgagagtagcagattgatcaataattacaccaattcgtaatgtgttatcagttcattaaatattgttgttttacttcatcgttta--AAAAA--GCTTGAGC---TA-TAC--TCACT--------------------AAAAACAAATAATTTA-GGAC-AAAATGTAACA-GTATTAGAAATAA--CTTTAAGTACATTA----------------TC---CTG----T-------TT---A-------T---------CT--------------------TTCTGTATTATAAAGCA----------G------CAG------CTTGATC-G---ATAATTACCACA-CTACATT-TGTG-TTAGCTTGTCATT---GA------A-A----TTG------TT-GGTATCACTT-GCTATT-------------T---G-AAA------T-TTTATCA--TG-TGTGTCTG-T-T-TCTAT--TATA---T-T---TT----------------------TCTTGT---------T-ATATGCTTATACA--A-----CTGTATATTTAGAGAG--AAA
gi|13 : ---TA-TAC--TCAGT-TTAAAT-GTATCCTACATCCAATTCAAACAAAATGAAGGCAAAAATGGAATG-TTATCAGAAATAT--TTTACAGTAGTTTACACGGTTTATCTTTCTTT---CTGTCTTT-------TT---A-------T---------TTGGATATAAAG----------C---------------A----------G------CAG------ATTGGTT-A---ATAATTACCACT-A
gi|14 : ctcttgtaagttcaaaacagtctaggcatttggataaccaacattgagaaaaaattgaagtagccattgTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAACA--A-TAGTTTT-----ACTCT-CT----------TGTT----TTAT--AAGT----------CTTTTGAGAGTA-A--AGTGC----AATGTACTTT-TTGGCTCG-----C-TAGTTTCATCTTT-A--------CAAGATTAT----------GTTATGCTCGTCAGTAT----------CT------CGATCTACAAGAAATATATTGACTCGTGCAGATTG-AAAATAAAA-----TGTCTACCTAGTCTTGA-G-TTattgccactacatg
gi|14 : AG--TCTTGAGT---TA-TACTTTCACT-TTATA-TGTATCCTACATTAAAatactttcactttatatgtatcctacattaaa
gi|15 : ttttcatttattctttgaatgtatgttttcaaacaatagttttactctcttgttttataagtcttttgagagtaaagtgcaatgtactttttggctcgctagtttcatctttacaagattatgttatgctcgtcagtatctcgatctacaagaaatatattgactcgtgcagattgaaaataaaatgtctacctT-----T-TAGTTTCATATTT-A--------CAAGAAGAT----------GTAATACTCATTTGTAT----------CT------TAATCCGCAAGAAATATATTGACTCGTTCAAGTTGAAA---AAAA-----TATCTACCTTGTTTTGATG-TTTTTTAAATAA--AACAAATTAAAC-TTAT--AAAAG--TATTCAGT---TA-TAT--TCATT-TTGCA-TGTATCCTACACCGAAGGCAAATAATATAAAGGC-AGCATGGAAGA-TTATCAGAAA
gi|16 : TTTT---ATAACAAACATACTAAGTTTTACTGAAAAAGGTTTTGAAT---TA-TAT--TC-CTATCGTAT-GTATCCTACA--AAAGACAAACAATATAACGAC-AAAATGGAACA-CTATT--AAGTAT--TGTTTAGT---TTA----------------TT---C---------------T---A-------T---------TT--------------------T---------------A----------G------T---------TTGA-------------AGC-----TACATA-TGTG-TTAGCATGTCATT---AA------ATA----GTA------TT-
gi|17 : gaTT-----ACGCT-CTTTTGTAAGTTTAGCGAAATCG---AAATGTTTTAT-TTCTTATAA---TATACCACT------AATATACTTTGTTGACTC------T-TACGTTCGACTTT-G--------CAAGATA------------------TTCATATGTAT----------A-------TGATCTACAATAAATATATTGACCTGTAGAGAATG-CA---TTAA----------ACTTAG-TTTGATagcatctaattgtcttctgaagtatattatgtt
gi|18 : ---------------A----------G------TAG------ATTGATC-A---ATAATTAACCCTAATA-GTA-TGTG-TTATCAGTTCATT---AG------ATA----TTG------TT-GTT----TTT-GCTATTTTCATTGTTTAAAT---GAAAAAAC---T-CCTATCA--TA-TGTGTATCTT-T-TTTAT--AACA---T-C---GTATTACTA
gi|19 : gttatattggtgtttttagagcTTCATCATTTAAAT---G-AAAATT---TTCCTATCA--TA-TGATCCTT-T-TAGCTATAATA-A---T-T---ATTTTATTAG---A--------TATATTGC---------T-ATATGCATATACA--A-----GTGTTTATTCTGAAAT--AAAG-CATTATCAAAAAAA
gi|2 : ttgTAAAAACGTACAGTACAAATT--TTTTTATCGAATAT-ACTTTACGAATAC----------AAATTTTAT---------ACATGTGGATTAATTGAAACTGGGTTAAATTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--TGTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCCTAAATCTGTTGAAAGCA---AAGTGCAATAG-GTGTAATGA---TATA--TCTCCCCAAAATAAACTAT-TTAACGCT-----T-TAATTTCATCTTT-AAAAGATTTAAAGATAAT----------GTTATATTCGCATGTAT----------TG------TGATCTACAAGAAGTGTATTGACTCGAGCAGATTGAAA---AAAA-----TGTCTTCCTAGCTTTAATG-TCTTT---ATAA--AGCAAATTAAAC-TTAT---AAAA--TTTTGAGC---TA-TAC--TTACT-GTATA-TGTATCCTACATCAAAAGTAAATAATGTAAGTGC-AAAATGGAATATTTATTATAAATAT--TTTTGAGTAAATTA----------------TT---CTT----T-------TT---ATCTGTCTT---------TT--------------------T---------------A----------AGAGTATCGG------ATTGATT-A---ATAATTACAATT-TTACATT-TGTG-TTATCAGTTCATT---AAAATTTTATA----TTG-------T-GTT----TTTAGCTATTTTCATCGTGTAAAT---G-AAAATC---T-CATATCA--TA-TGTGAATC-T-T-TCTAT--TACA---T-T---TGATTTCTTA---A--------CATCTTGT---------T-TTAGGCATAAATA--A-----TTATGTATTCTGAAAT---AAA-AA-TATTAAAg
gi|20 : atagatgaccattaag-TGTGCATC-T-G-TCTAT--TACA---T-G---TATTTACTAG---A--------TCTCTTGTGTCTCTTGAT-ATATCAATATACA--A-----TTGTGTATTCTGAAAT--AAAA-CATTATTAAAA
gi|21 : T---G-AAAAAC---T-CTTATCA--GA-TGTGCTTCCT-T-TCTAT--TACA---T------------------------------CCTGT---------T-ATATGCACATATT--A-----TTATGTATTCTGAAAT--AAAT-AA-TATTGAAAActa
gi|3 : TAAAA---TACAGTATTAATTAATGTCCAACG--TTT-ATTTTAAGAATACT---------AAACTTTAT---------AAATGTGGATTTATTGAAACCGAATTGTGCTC---CTTTTGTAATAACACAAGAGAAAC-AATTTTTCATTGATT--CGTT-GAATGTATGTTTTCAAA-A--A-TT-TTTTT----ACATT-CTTTCATAAGTCTGTTGAAAGCA---AAGTGCAATAT-TTCTTATGA---TATA--ACACCCCAAAATGTACTAT-TTGGCCCT-----T-TAATTTCATCCTT-A--------CAAGATAAT----------GTTATGTTTGCATATAT----------CT------TGATCTACAAGAAATGTATTGACTCATGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TCTTA---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTAAAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGAAC-AAAATGGTACA-TTATTCGAAATAT--TTATGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATGTATC-A---ATAATTACCATT-ATACATA-TGTG-TTATCAGTTCATT---AA------GTA----TTG------TT-GTT----TTT-ACTGTCATCATCATTTATAT---G-AAAACC---T-CCTATAA--TA-TGTGCATC-T-T-TCTAT--TATA---T-T---TCATTACTAC---A--------TATCTTGT---------T-GTATGCATGTACATTAAAATTTTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|4 : aTTTTCACA-A--G-T----TT-----ACTCTACTTTGATAGGCCA--TAAATTTATACAAGGGCAG-ATCTTCT------------------CCCAAAATGTACAAT-TTTGCCTT-----T-AAAGTTCGTCTTT-A--------CGAGATAAT----------GTTATGTTCGTATGTAT----------CT------GGATCTGCAGGATATATGTGGACTAGAGCAGATTG-AAT--AAAATTAATTATCTACCTAGTTTTAATGTTTTTT---ATAG--AACCAATTAAACGTTAT---ACAA--TATTGA------A-TA----------TATA-TGT----------AAAGACAA----------------AACGGAACA-TTATTAGAAATGC--TCTTTATT---TT-----------------TT---CTA----TA------TTTCAG-------T---------TT--------------------TGATC-----------A----------A------CAG------AATGAAT-A---CTAATTACCACT-ATACATG-TGTG---AGC-TTTTATT---AA------ATATGATTTGTGTGACTT-GTG----TTT-GCTATTTTCACCGTTAAAATGGGG-AAAAACAAGT-CTTATTA--TA-TGTGTCTC-CGT-TTTAT--AACA---TATACGTTATATCTAA---ATAATTTTTTATCCTGT---------TGAT-TGCATATAGT--A-----TTGTGTATTCTAAAAT--AAAT-GA-TATCAAAAACAAca
gi|5 : GTAA-AACGGAATAAAAAGGAATCTTTAAAGTATTAGCTTTAGAATAT-TACTTTCAAA-ATAACTA-TATGGAAAAACTC--CTATCACA----TGTTGAAAATA---AAGTGCAACAT-TTCTAATGA---TATA--ACTCTTTAAGATGTGCTAT-TTGGCCCT-----T-AAAGTTCATCTTT-A--------CAAGATAATATTAAATTATGTTATGTTCATATGTATATGTATATGTTT------TCATTTACAAAGAATGAATTGACTCGTGAAGATTA-AA---AA--------GTCTACCCAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTAAGT---TA-TAC--TCACT-TTATA-TGCAACCTACATCAAAGGCAAACAATATAAAGGT-AAAATTGAAAA-TTATTAAAAGTAT--TTTTGGGTAAATTA----------------TA---CTG----T-------TT---A-------T---------CTTACTCTGTTTTAGCTTGGAGT---------------A----------G------CAGA-----ATTAA-C-A---ATAATTACCACT-TTAC--A-TGTG-TTAACATTTCATA---AA------ATA----TTT------TTGGTTTTG-TTT-GCTATTTTC
gi|6 : -A--A-TA-TTTT-----ACTCT-CTTTTGTAAGTCTTTTAAAAGTA---AAGTATACTAT-TTCTTATAC---TATA--ACTCCCCAAACTGTACTGT-TTGGCCCTAGGCTTATAGTTTCGTCATT-A--------CAAGATAAT----------GTTATATTCGTATGTAT----------CT------TGATCTACAAGAAATGTATCAACCTTTGCAAATTG-AAGAAAAAA-----AGTCTTCCTAGTTTTGATGTTTTTT---ATAA--AATCAATTTAACATTAT--AAAAA--TCTTGAAT---AA-TAC--TCACT-TTATA-TGTATCTTACATCGAAGGCAAGTAATATAAAGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------TCTCTCTCTGTT--------------------TTAGAGC---------A----------G------CAG------ATTGGTC-A---ATTATTACCTCT-ATAC--A-TGTG-TTAACATTTCATT---AA------TAA----TTG------TT-GTA----TTA-TTTGTTTTCATTGTTTCAGT---A-GATATC---T-TCTATCATTTATTATGCCCC-T-T-TCTAT--TACA---C-T---TTACTA
gi|7 : ACGTACTTC-TTGGCCCT-----T-TAGTTTTATATTT-A--------CA-TATATT----------GTTATGCCCGTATGTAT----------CTAGATCTTGATCTACAAGAAATATATTGACTCGTGTAGATTG-AA---AAAA-----TCTCTGCATA-----------TTTT---ATAG--AACAAATTAAACTCTAT--AAAAG--TCTTAAGT---TA-TAC--TCACT-TTATAT-GTATCCTACATCAAAAGTAAATGATATAAGGAC-AAAATTGAACA-TTCTTAGA----T--TGTTTAATAAATGA----------------TA---CTG----T-------TT---G-------TCTTTATCTGTT--------------------T---------------A----------G------AAGTTGCATATTTGTC-A---ATTATTACCACT-ATACATG-TATAATTGTTGGTT--TT---CA------A--------G------TT-GTT----T---GTTATTTTCATCCTTTAAAT---G-TGAAAC---T-CCTACCA--TA-TGTGCCTC-C-T-TCCAT--TACACGTT-T---TTTTTTTTAAAATA--------TATATTGT---------T-ATATGCATATACA--G-----TTGTGTAGTCTG-AAT--AAAACAA-TATTAAAAAga
gi|8 : actgatattaagtttcaaattatatT-----T-TAATTTCATCTTTTA--------CAAAATAAT----------GTTTTGTTCGCATGTAT----------C---------A---ACAAGAAATA-----ACTTGTGCAGATTG-AA---AAAAA----TATCTATCTAGTTTTGAGA-TCTTT---ATAG--A-CAAATTAAACGTTAA--ACAAA--TCTTGAATGAATAATAA--TCACT-GTATGT-GTATCCTACATCAAAAGCAATTACTATAAGGTC-AAAATTGAACA-TTATTAGAAATAT--GTTTATGTAAATTA----------------TTGTTTTG----TCTTTCTTTT---A-------T---------TTAGAG----------------T---------------A----------G------CAT------AATGATC-A---ATAATTGCCACT-GTACATA-TGTG-TTATCATTTCATT---AA------A-A----TTG------TT-GTT----CT--GCTATTTTCATTGTTT---T---G-AAAA-C---T-CCTATCA--TA-TATGCATC-T-T-TTTAT--TACA---T-T---GTACTACTAA---A--------TATCTTGC---------T-ATTTGCATATACA--A-----TTGTTTATTCTGAAAT--AAAA-A-----TAAAAAAca
gi|9 : atCAAATT--TTTTAA---AATTTTGTTTTA--AATATGCTG------AAATTTTATTTTTCTTACAAATTTTGTTTGAAAGAAA-TGAA--ATACTCTGACCCCAATAATAACACAAAAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTTTGTTTTCAAA-AAAA-TA-TTTT-----ACCCT-CTTTCAGAAGTCTGTTGAAAATA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCAAAGATGTAGTAT-TTGGCCCT-----A-TAGTTTCATTTTT-A--------CATTATAAT----------GTTATGTTCGTATGTAT----------CT------TAATCTACAAGAAATATATTGACTCATGTAGATTG-AA---AATA-----TGTTTACCTAGTTTTGATG-TTTTT---ATAG--AACATAATAAACATTAT--AAAAA--TATTGAGT-----------TCACT-TTAT-TTGTATCCTATATCAAAGGCAca
blockSeqs : . AA T A A T C GCTG TTTTCTTAC G A T C T TGA T G C AG A A C TAAC AG GAAAA A G A G T TAC TT C T GAG CC G T G AGGCT A T AAAGATTT ATTAAATTAT ATGTATATGTTT A AAT TTAATT T TAA CA G TG GG GAA A TT A TT A T . A CACGGTTTATCTTTCT GTT TTTATCTTACTCTGTTTTAGCTTGGAGTAG TTGCAT T TAT A AA A T G . AATTTT T TGAT TGTGAC G ATCA AG A GGG A ACAAG T TT T C T G A AA TATACGTTATATCTAAATAATTTTT GTCTCTTGA G TT AAATT AA C T
blockSeqs : . A A T . A T . G T T C T . T . C . . A . AAA A T . C A G T T AT . T . . C T . . . . . . CTAGATCT A GAA AT T . . G . . . . . . TT . . . G . . TTTATTTTTCTTTTTTTGAGAGTAG A . . . T . T G . . T . . . TTG A A . . AC . . . A C . . . CGTTTTTTTTTTTAAAATA . . . . . . T
blockSeqs : . . . T . . . . T G A . . . T . C . . A . A T . . A A G G . AT . A . . C A . . . . . . CT . T T . . . T . . . . . . T . . . A . . TTTATCTTTCTGTATTATAAAGCAG . . . . T . G T . . T . . . . A A . . TT . . . C . . . . TTATTTTATTAGA . . . . . . .
blockSeqs : . . A . . T . A A . . A G A G . AC . T . . C A . . . . . . CT . . T . . . G . . . . . . T . . . C . . TTTATCTCTCTCTGTTTTAGAGCAG . . . . A . G T . . T . . . . G T . . TC . . . A . . . . TTTGATTTCTTAA . . . . . . .
blockSeqs : C . . . . A A . . A A G T . CT . A . . C A . . . . . . TG . . T . . . G . . . . . . T . . . T . . TCTTTTTATTTGGATATAAAGCAG . . . . A . T G . . T . . . . G A . . AC . . . A . . . . TGTATTTACTAGA . . . . . . .
blockSeqs : . G A . . G A A A . AT . T . . C A . . . . . . CT . . T . . . G . . . . . . T . . . G . . TTTATCTGTCTTTTTAAGAGTAT . . . . T . T G . . T . . . . A A . . CC . . . T . . . . TTTCATTACTACA . . . . . . .
blockSeqs : . A . . . A . G G . G . T . . . G . . . . . . CT . . A . . . A . . . . . . T . . . G . . TTTCTTTATTTTTTGGAGCAG . . . . A . T G . . T . . . . G A . . TC . . . A . . . . TTGTACTACTAAA . . . . . . .
blockSeqs : . . . . . A . . . . . . . T . . . . . . CT . . T . . . T . . . . . . T . . . T . . TCTTTCTTTTATTTAGAGTAG . . . . G . G T . . T . . . . G . . . AC . . . C . . . . TTTT . . . . . . .
blockSeqs : A . . . . . . CT . . T . . . G . . . . . . T . . . G . . TTTGTCTTTATCTGTTTAG . . . . A . A T . . A . . . . T . . . C . . . C . . . . T . . . . . . .
blockSeqs : . . . . . A . . . . . . A . . . . . . T . . . G . . TATTTCAGTTTTGATCAA . . . . A . A T . . . . . . . G . . . . . . C . . . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . T . . . T . . TTTATTTTAG . . . . G . T G . . . . . . . G . A . . . .
blockSeqs : . . . . . . . . . T . . . A . . TATTTTAG . . . . A . T T . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . T
blockSeqs : . . . . .
blockSeqCons : A*** ** A* *** G* TTTNATTACTAGA******************
originalCons : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA---T-T---TTATTACTAA---A--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
finalCons : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-AA---TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTTG-CTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACATTTNATTACTAGA------------------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAACAACTTTTTCACCATATTGAAGCCACTTCTATTCCATGTTGTTTGCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 5555555555 444444444 111 1111 11111 111 11111111 1111111111 222222222222222222 111 111111 22 2222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 1111 2222222222222222222222222222222 111111111
lowQualScore : 000 33 0 9 3 1 0 8 7777777777 000000000 0 1 1 1 2 3 777 6 8 2 99 6 7 5 4444 88 55555 4 2 3 0 0 1 1 222 0 11 4 2 777 66 2 00 1 4 88888 3 0 3 22222222 4444444444 000000000000000000 6 555 222222 6 555 44 4 33 33 444 2 33 2 44 2 2 44 2 0 0000000000000000 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 2 555 2 0 66 3 1 1 555 888888 4 6666 888888 3 2222 33 1 666 3 88888 3 55 3 1 6 3 3 44 9999999999999999999999999999999 444444444 3 55 99999 55 4 8
lowQualScore : ... .. . . . . . . .......... ......... . . . . . . ... . . . .. . . . .... .. ..... . . . . . . . ... . .. . . ... .. . .. . . ..... . . . ........ .......... .................. . ... ...... . ... .. . .. .. ... . .. . .. . . .. . . ................ ... ........................................................................................... ...... . ... . . .. . . . ... ...... . .... ...... . .... .. . ... . ..... . .. . . . . . .. ............................... ......... . .. ..... .. . .
lowQualScore : 555 88 2 8 2 0 0 8 2222222222 000000000 8 0 2 0 5 2 555 0 0 5 22 7 8 0 6666 66 66666 4 7 7 9 1 9 0 222 1 77 4 2 888 11 9 22 0 0 33333 3 1 3 11111111 6666666666 111111111111111111 7 000 222222 7 444 22 0 99 77 444 5 44 5 88 9 9 22 6 8 4444444444444444 444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 9 000 9 8 22 1 0 5 444 888888 3 5555 888888 1 9999 66 0 444 6 22222 6 00 3 0 7 3 3 66 1111111111111111111111111111111 555555555 6 00 11111 00 0 0
consensus : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA------T-TNT-TTA---CTAGA--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
Reference ( family-173 ) : NTAAAAACGTACAGTACAAATT--TTTTCATCGAATNT-ATTTTACGAATACNCCG------AAACTTTAT---------AAATGTNGATTAANTGAAACTGAATTATGCTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCGTAAGTCTGTTGAAANTA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCCAAAATGTACTNT-TTGGCCCT-----T-TAGTTTCATCTTT-A--------CAAGATAAT----------GTTATGTTCGTATGTAT----------CT------TGATCTACAAGAAATATATTGACTCGTGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TTTTT---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATTGATC-A---ATAATTACCACT-ATACATA-TGTG-TTANCAGTTCATT---AA------ATA----TTG------TT-GTT----TTT-GCTATTTTCATCGTTTAAAT---G-AAAANC---T-CCTATCA--TA-TGTGCNTC-T-T-TCTAT--TACA------T-TTNATTA---CTAGA--------TATCTTGT---------T-ATATGCATATACA--A-----TTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|1 : ACAGACCAAACT--TTTTCATCGAATAT-ATTTTACGAATACCCCGGAAACAAAACTTTAT---------AGATGTTGATTAAGTGAAACTGAATTATGTTC---TTTTTCTAAATGCACAAGGGAAAC-AATTTTT---TT-TT--CTAT-AAATATTTGTTTTTTA-------TT-TTTT-----ATTCT-TTTTCGTATGACTGTTTAAATAA---AAATTCAATAT-TTCTTATGA---TATA--CCTTTCCCAAATACACTGT-TTGGACCT-----A-TAATTTC---TTT-A--------CAAGATAAT----------GATATGTTCGTATGTAT----------CT------TGATCTATAAGAAATATAATGACTCGAGCAGATTG-AA---AAAA-----CAACAACAAGGTTTTGATA-TTTTT---AAAG--AACAAATTAAACGTTAT--CAAGA-------AG-----A-TAT--TCGCT-TAATAT-ATATCCTACATCAACGGCAAATAATATAAAGGC-AAAATGGAACA-TTATTAGAAATATATTTTTAAGCGAATTA----------------TT---CTG----T-------TT---A-------T---------CT--------------------TCCTCT----------ATTTTTGCGCTG------CAC------AATGATC-A---ATACTTACCACC-ATACAC---GAG-TTAGCAGTTTTTTTATAA------ATA----GTG------TT-GTT----TTT--CTATTTTCATCGT
gi|10 : agtaattcttcttttaattttgaaagattagaaaactcaacgaattccaatgttgatttaattaaaaaaaacttaagcagtgaataaaagcctttatgcgctctttctgaaacttaaatcggaagttcctcaaaacgataataagtattgaacatagattttaaatacagacatgagtatagatgacttgaaaatataatacaaacaaaaattcatatttgtagaagacccaaaacttaagacaccACCTAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTGAGT---TA-TAC--TCACT-TTATAT-GTATTCTACATCAAAGGCAAATAATATAAGGGC-ATAATGGAACA-TTGTTAGAAATAT--TTTTAAGTAAATTA----------------TT---CTGTTTCT-------TT---A-------T---------TT--------------------TTTGGAGC--------A----------G------CGG------ATTGATCTATATATAATTACCATT-ATACATT-TGTG-CTATCAGTTCATT---AA------ATA----CTG------TT-GTT----TTT-ACTATCTTCATCATTTATAT---G-AAAAAA---T-CCTTTAA--TA-TGTGTATC-T-C-C----------------------TCA---CTAAA--------TATCTTGC---------A-AAATGCCTAAACA--A-----TTCTGTATTCTAAAAT--AAAA-AA-TATTAAAAAa
gi|11 : atga---ATAG--AACAAATTAAATGCTAT--AAAA---TCGTGAGT---TA-TAC--TCACT-TTACAT-ATTCCCTACACCAAAGGCAAATAGCTTAAGAGC-AAAATATAATG-CTATTATAAATAT--AATTGAGTGAATCA----------------TT---CTG----T-------TT---A-------T---------TT--------------------TTCTTTTTTTGAGAGTA----------G------CAG------ATTGATC-A---ATAATTACACCA-ATTCGTAATGTG-TTATCAGTTCATT---AA------ATA----TTG------TT-G-T----TTT-AC----TTCATCGTTTAca
gi|11 : gagaaaacaagcacttataaggtttccagCTTGT---------T-GTATTAATATACA--G-----TTGTGTATTCTAAAATAAAAAA-AA-TATTAAACAAActtgttgtattaatatacagttgtgtattctaaaataaaaaaaatattaaacaaa
gi|12 : gagaaaacaagcacttataaggtttccagatagaacaaattaaatgctataaaatcgtgagttatactcactttacatattccctacaccaaaggcaaatagcttaagagcaaaatataatgctattataaatataattgagtgaatcattctgtttatttttctttttttgagagtagcagattgatcaataattacaccaattcgtaatgtgttatcagttcattaaatattgttgttttacttcatcgttta--AAAAA--GCTTGAGC---TA-TAC--TCACT--------------------AAAAACAAATAATTTA-GGAC-AAAATGTAACA-GTATTAGAAATAA--CTTTAAGTACATTA----------------TC---CTG----T-------TT---A-------T---------CT--------------------TTCTGTATTATAAAGCA----------G------CAG------CTTGATC-G---ATAATTACCACA-CTACATT-TGTG-TTAGCTTGTCATT---GA------A-A----TTG------TT-GGTATCACTT-GCTATT-------------T---G-AAA------T-TTTATCA--TG-TGTGTCTG-T-T-TCTAT--TATA------T-TTT----------------------TCTTGT---------T-ATATGCTTATACA--A-----CTGTATATTTAGAGAG--AAA
gi|13 : ---TA-TAC--TCAGT-TTAAAT-GTATCCTACATCCAATTCAAACAAAATGAAGGCAAAAATGGAATG-TTATCAGAAATAT--TTTACAGTAGTTTACACGGTTTATCTTTCTTT---CTGTCTTT-------TT---A-------T---------TTGGATATAAAG----------C---------------A----------G------CAG------ATTGGTT-A---ATAATTACCACT-A
gi|14 : ctcttgtaagttcaaaacagtctaggcatttggataaccaacattgagaaaaaattgaagtagccattgTTTTCATTTATT--CTTT-GAATGTATGTTTTCAAACA--A-TAGTTTT-----ACTCT-CT----------TGTT----TTAT--AAGT----------CTTTTGAGAGTA-A--AGTGC----AATGTACTTT-TTGGCTCG-----C-TAGTTTCATCTTT-A--------CAAGATTAT----------GTTATGCTCGTCAGTAT----------CT------CGATCTACAAGAAATATATTGACTCGTGCAGATTG-AAAATAAAA-----TGTCTACCTAGTCTTGA-G-TTattgccactacatg
gi|14 : AG--TCTTGAGT---TA-TACTTTCACT-TTATA-TGTATCCTACATTAAAatactttcactttatatgtatcctacattaaa
gi|15 : ttttcatttattctttgaatgtatgttttcaaacaatagttttactctcttgttttataagtcttttgagagtaaagtgcaatgtactttttggctcgctagtttcatctttacaagattatgttatgctcgtcagtatctcgatctacaagaaatatattgactcgtgcagattgaaaataaaatgtctacctT-----T-TAGTTTCATATTT-A--------CAAGAAGAT----------GTAATACTCATTTGTAT----------CT------TAATCCGCAAGAAATATATTGACTCGTTCAAGTTGAAA---AAAA-----TATCTACCTTGTTTTGATG-TTTTTTAAATAA--AACAAATTAAAC-TTAT--AAAAG--TATTCAGT---TA-TAT--TCATT-TTGCA-TGTATCCTACACCGAAGGCAAATAATATAAAGGC-AGCATGGAAGA-TTATCAGAAA
gi|16 : TTTT---ATAACAAACATACTAAGTTTTACTGAAAAAGGTTTTGAAT---TA-TAT--TC-CTATCGTAT-GTATCCTACA--AAAGACAAACAATATAACGAC-AAAATGGAACA-CTATT--AAGTAT--TGTTTAGT---TTA----------------TT---C---------------T---A-------T---------TT--------------------T---------------A----------G------T---------TTGA-------------AGC-----TACATA-TGTG-TTAGCATGTCATT---AA------ATA----GTA------TT-
gi|17 : gaTT-----ACGCT-CTTTTGTAAGTTTAGCGAAATCG---AAATGTTTTAT-TTCTTATAA---TATACCACT------AATATACTTTGTTGACTC------T-TACGTTCGACTTT-G--------CAAGATA------------------TTCATATGTAT----------A-------TGATCTACAATAAATATATTGACCTGTAGAGAATG-CA---TTAA----------ACTTAG-TTTGATagcatctaattgtcttctgaagtatattatgtt
gi|18 : ---------------A----------G------TAG------ATTGATC-A---ATAATTAACCCTAATA-GTA-TGTG-TTATCAGTTCATT---AG------ATA----TTG------TT-GTT----TTT-GCTATTTTCATTGTTTAAAT---GAAAAAAC---T-CCTATCA--TA-TGTGTATCTT-T-TTTAT--AACA------T-CGTATTA---CTA
gi|19 : gttatattggtgtttttagagcTTCATCATTTAAAT---G-AAAATT---TTCCTATCA--TA-TGATCCTT-T-TAGCTATAATA-A------T-TATTTTA---TTAGA--------TATATTGC---------T-ATATGCATATACA--A-----GTGTTTATTCTGAAAT--AAAG-CATTATCAAAAAAA
gi|2 : ttgTAAAAACGTACAGTACAAATT--TTTTTATCGAATAT-ACTTTACGAATAC----------AAATTTTAT---------ACATGTGGATTAATTGAAACTGGGTTAAATTC---CCTTTGTAATAACACAAGAGAAAC-AATTTTTCATTTATT--TGTT-GAATGTATGTTTTCAAA-A--A-TA-TTTT-----ACTCT-CTTTCCTAAATCTGTTGAAAGCA---AAGTGCAATAG-GTGTAATGA---TATA--TCTCCCCAAAATAAACTAT-TTAACGCT-----T-TAATTTCATCTTT-AAAAGATTTAAAGATAAT----------GTTATATTCGCATGTAT----------TG------TGATCTACAAGAAGTGTATTGACTCGAGCAGATTGAAA---AAAA-----TGTCTTCCTAGCTTTAATG-TCTTT---ATAA--AGCAAATTAAAC-TTAT---AAAA--TTTTGAGC---TA-TAC--TTACT-GTATA-TGTATCCTACATCAAAAGTAAATAATGTAAGTGC-AAAATGGAATATTTATTATAAATAT--TTTTGAGTAAATTA----------------TT---CTT----T-------TT---ATCTGTCTT---------TT--------------------T---------------A----------AGAGTATCGG------ATTGATT-A---ATAATTACAATT-TTACATT-TGTG-TTATCAGTTCATT---AAAATTTTATA----TTG-------T-GTT----TTTAGCTATTTTCATCGTGTAAAT---G-AAAATC---T-CATATCA--TA-TGTGAATC-T-T-TCTAT--TACA------T-TTGATTT---CTTAA--------CATCTTGT---------T-TTAGGCATAAATA--A-----TTATGTATTCTGAAAT---AAA-AA-TATTAAAg
gi|20 : atagatgaccattaag-TGTGCATC-T-G-TCTAT--TACA------T-GTATTTA---CTAGA--------TCTCTTGTGTCTCTTGAT-ATATCAATATACA--A-----TTGTGTATTCTGAAAT--AAAA-CATTATTAAAA
gi|21 : T---G-AAAAAC---T-CTTATCA--GA-TGTGCTTCCT-T-TCTAT--TACA------T---------------------------CCTGT---------T-ATATGCACATATT--A-----TTATGTATTCTGAAAT--AAAT-AA-TATTGAAAActa
gi|3 : TAAAA---TACAGTATTAATTAATGTCCAACG--TTT-ATTTTAAGAATACT---------AAACTTTAT---------AAATGTGGATTTATTGAAACCGAATTGTGCTC---CTTTTGTAATAACACAAGAGAAAC-AATTTTTCATTGATT--CGTT-GAATGTATGTTTTCAAA-A--A-TT-TTTTT----ACATT-CTTTCATAAGTCTGTTGAAAGCA---AAGTGCAATAT-TTCTTATGA---TATA--ACACCCCAAAATGTACTAT-TTGGCCCT-----T-TAATTTCATCCTT-A--------CAAGATAAT----------GTTATGTTTGCATATAT----------CT------TGATCTACAAGAAATGTATTGACTCATGCAGATTG-AA---AAAA-----TGTCTACCTAGTTTTGATG-TCTTA---ATAG--AACAAATTAAACGTTAT--AAAAA--TCTAAAGT---TA-TAC--TCACT-TTATATTGTATCCTACATCAAAGGCAAATAATATAAGAAC-AAAATGGTACA-TTATTCGAAATAT--TTATGAGTAAATTA----------------TT---CTG----T-------TT---A-------T---------TT--------------------T---------------A----------G------CAG------ATGTATC-A---ATAATTACCATT-ATACATA-TGTG-TTATCAGTTCATT---AA------GTA----TTG------TT-GTT----TTT-ACTGTCATCATCATTTATAT---G-AAAACC---T-CCTATAA--TA-TGTGCATC-T-T-TCTAT--TATA------T-TTCATTA---CTACA--------TATCTTGT---------T-GTATGCATGTACATTAAAATTTTGTGTATTCTGAAAT--AAAA-AA-TATTAAAAAAAA
gi|4 : aTTTTCACA-A--G-T----TT-----ACTCTACTTTGATAGGCCA--TAAATTTATACAAGGGCAG-ATCTTCT------------------CCCAAAATGTACAAT-TTTGCCTT-----T-AAAGTTCGTCTTT-A--------CGAGATAAT----------GTTATGTTCGTATGTAT----------CT------GGATCTGCAGGATATATGTGGACTAGAGCAGATTG-AAT--AAAATTAATTATCTACCTAGTTTTAATGTTTTTT---ATAG--AACCAATTAAACGTTAT---ACAA--TATTGA------A-TA----------TATA-TGT----------AAAGACAA----------------AACGGAACA-TTATTAGAAATGC--TCTTTATT---TT-----------------TT---CTA----TA------TTTCAG-------T---------TT--------------------TGATC-----------A----------A------CAG------AATGAAT-A---CTAATTACCACT-ATACATG-TGTG---AGC-TTTTATT---AA------ATATGATTTGTGTGACTT-GTG----TTT-GCTATTTTCACCGTTAAAATGGGG-AAAAACAAGT-CTTATTA--TA-TGTGTCTC-CGT-TTTAT--AACA------TATACGTTATATCTAAATAATTTTTTATCCTGT---------TGAT-TGCATATAGT--A-----TTGTGTATTCTAAAAT--AAAT-GA-TATCAAAAACAAca
gi|5 : GTAA-AACGGAATAAAAAGGAATCTTTAAAGTATTAGCTTTAGAATAT-TACTTTCAAA-ATAACTA-TATGGAAAAACTC--CTATCACA----TGTTGAAAATA---AAGTGCAACAT-TTCTAATGA---TATA--ACTCTTTAAGATGTGCTAT-TTGGCCCT-----T-AAAGTTCATCTTT-A--------CAAGATAATATTAAATTATGTTATGTTCATATGTATATGTATATGTTT------TCATTTACAAAGAATGAATTGACTCGTGAAGATTA-AA---AA--------GTCTACCCAGTTTTTATG-TTTTT---ATAG--AACAAATTAAATGTTAT--AAAAA--TCTTAAGT---TA-TAC--TCACT-TTATA-TGCAACCTACATCAAAGGCAAACAATATAAAGGT-AAAATTGAAAA-TTATTAAAAGTAT--TTTTGGGTAAATTA----------------TA---CTG----T-------TT---A-------T---------CTTACTCTGTTTTAGCTTGGAGT---------------A----------G------CAGA-----ATTAA-C-A---ATAATTACCACT-TTAC--A-TGTG-TTAACATTTCATA---AA------ATA----TTT------TTGGTTTTG-TTT-GCTATTTTC
gi|6 : -A--A-TA-TTTT-----ACTCT-CTTTTGTAAGTCTTTTAAAAGTA---AAGTATACTAT-TTCTTATAC---TATA--ACTCCCCAAACTGTACTGT-TTGGCCCTAGGCTTATAGTTTCGTCATT-A--------CAAGATAAT----------GTTATATTCGTATGTAT----------CT------TGATCTACAAGAAATGTATCAACCTTTGCAAATTG-AAGAAAAAA-----AGTCTTCCTAGTTTTGATGTTTTTT---ATAA--AATCAATTTAACATTAT--AAAAA--TCTTGAAT---AA-TAC--TCACT-TTATA-TGTATCTTACATCGAAGGCAAGTAATATAAAGGC-AAAATGGAACA-TTATTAGAAATAT--TTTTGAGTAAATTA----------------TT---CTG----T-------TT---A-------TCTCTCTCTGTT--------------------TTAGAGC---------A----------G------CAG------ATTGGTC-A---ATTATTACCTCT-ATAC--A-TGTG-TTAACATTTCATT---AA------TAA----TTG------TT-GTA----TTA-TTTGTTTTCATTGTTTCAGT---A-GATATC---T-TCTATCATTTATTATGCCCC-T-T-TCTAT--TACA------C-T---TTA---CTAGA--------
gi|7 : ACGTACTTC-TTGGCCCT-----T-TAGTTTTATATTT-A--------CA-TATATT----------GTTATGCCCGTATGTAT----------CTAGATCTTGATCTACAAGAAATATATTGACTCGTGTAGATTG-AA---AAAA-----TCTCTGCATA-----------TTTT---ATAG--AACAAATTAAACTCTAT--AAAAG--TCTTAAGT---TA-TAC--TCACT-TTATAT-GTATCCTACATCAAAAGTAAATGATATAAGGAC-AAAATTGAACA-TTCTTAGA----T--TGTTTAATAAATGA----------------TA---CTG----T-------TT---G-------TCTTTATCTGTT--------------------T---------------A----------G------AAGTTGCATATTTGTC-A---ATTATTACCACT-ATACATG-TATAATTGTTGGTT--TT---CA------A--------G------TT-GTT----T---GTTATTTTCATCCTTTAAAT---G-TGAAAC---T-CCTACCA--TA-TGTGCCTC-C-T-TCCAT--TACACGTTTTT-TTTTTTA---AAATA--------TATATTGT---------T-ATATGCATATACA--G-----TTGTGTAGTCTG-AAT--AAAACAA-TATTAAAAA
gi|8 : actgatattaagtttcaaattatatT-----T-TAATTTCATCTTTTA--------CAAAATAAT----------GTTTTGTTCGCATGTAT----------C---------A---ACAAGAAATA-----ACTTGTGCAGATTG-AA---AAAAA----TATCTATCTAGTTTTGAGA-TCTTT---ATAG--A-CAAATTAAACGTTAA--ACAAA--TCTTGAATGAATAATAA--TCACT-GTATGT-GTATCCTACATCAAAAGCAATTACTATAAGGTC-AAAATTGAACA-TTATTAGAAATAT--GTTTATGTAAATTA----------------TTGTTTTG----TCTTTCTTTT---A-------T---------TTAGAG----------------T---------------A----------G------CAT------AATGATC-A---ATAATTGCCACT-GTACATA-TGTG-TTATCATTTCATT---AA------A-A----TTG------TT-GTT----CT--GCTATTTTCATTGTTT---T---G-AAAA-C---T-CCTATCA--TA-TATGCATC-T-T-TTTAT--TACA------T-TGTACTA---CTAAA--------TATCTTGC---------T-ATTTGCATATACA--A-----TTGTTTATTCTGAAAT--AAAA-A-----TAAAAAAca
gi|9 : atCAAATT--TTTTAA---AATTTTGTTTTA--AATATGCTG------AAATTTTATTTTTCTTACAAATTTTGTTTGAAAGAAA-TGAA--ATACTCTGACCCCAATAATAACACAAAAGAAAC-AATTTTTCATTTATT--CTTT-GAATGTTTGTTTTCAAA-AAAA-TA-TTTT-----ACCCT-CTTTCAGAAGTCTGTTGAAAATA---AAGTGCAATAT-TTCTTATGA---TATA--ACTCCCAAAGATGTAGTAT-TTGGCCCT-----A-TAGTTTCATTTTT-A--------CATTATAAT----------GTTATGTTCGTATGTAT----------CT------TAATCTACAAGAAATATATTGACTCATGTAGATTG-AA---AATA-----TGTTTACCTAGTTTTGATG-TTTTT---ATAG--AACATAATAAACATTAT--AAAAA--TATTGAGT-----------TCACT-TTAT-TTGTATCCTATATCAAAGGCAca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AAACAACTTTTTCACCATATTGAAGCCACTTCTATTCCATGTTGTTTGCAAA