lowQualScore : 11 1 11111 5555555555555555555555555555555555555 2222222222 33333333333333333 1111111 1111 1 1 1 1111
lowQualScore : 2 33 55 4 55 9 4 77777 2222222222222222222222222222222222222 2 1 8 0000000000 4 8 1 33333333333333333 5 77 1111111 1 5555 6 3 0 5 0 1 5 0 99 7 1 3 2 4444
lowQualScore : . .. .. . .. . . ..... ..................................... . . . .......... . . . ................. . .. ....... . .... . . . . . . . . .. . . . . ....
lowQualScore : 0 88 00 0 55 0 4 55555 5555555555555555555555555555555555555 7 4 1 8888888888 4 9 7 00000000000000000 0 22 8888888 4 6666 9 8 0 0 0 7 3 1 44 3 7 2 2 2222
consensus : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACAAAAT-ATACAGTACAT-----TACAATACAATACA------------ATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCTCAAATGGGG-A-----------AAA-AAA-CAG--AA-GACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGACTTTTCATGTT----AAGATTGATAAAGTTGT
Reference ( gi|2 ) : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACTAAAT-ATACAGTACAT-----TACAATACAATACA------------ATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AA-AACAAAACGAAATAA----CGAAACATATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACAGATTAAAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|16 : CTGTTTA--AGCCTCCAATACTGAAGAGTTACACAA----ACA--TGA
gi|3 : gtataatTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATTCAATTATACAAAACAAAAT-ATACAGTACAT-----TACAATCCAATACA------------ATATA--------------------TCAATAAAGCAACACACA-TTTCACGCCCGAACACACGCATGCACATACA--------CACATGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGAATA-----------AAA-AAA-CAG--AAGAAAAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAATGACTCGTCATTCAATCCATCATGCGATGGAAA-----TACAATTATCTTTAAACATTTTACTTGTAATTCGTCACGGATTAGAAATTGACGTAGGTGAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|1 : TCTTTATTAACTTCCAATACTGAAGAGTAACAAAA---CACA--TGAG-AATA--TGAAAAAACAACATACAATTATACAAAACAAAAT-NNNNNNNNNNN-----NNNNNNNNNNNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNTCAATAAAGTAACACACATATTCACGCCCGAACACACGCACACACACACATACACACACACACGCGCGTGCATTAAT-CAAAAGCA-TGTAAATATTACCAGAAGAAAGACCTCAAATGAAA-A-----------AAG-AAA-CAG--AA-GACAAAACGAAATAA----CAAAACATGTGAGAAGAAAATGGTAATACAAACGAACTGAAAGG-AA-TAGCAAGGACTCGTCATTCAACCCATCATGCAATGGAAATACCTTACAATCATCTTTAAACATTTTACTTTTAATTCGTCACATATTAGAAATTGACGTTAGCCAGTGAAGAGATGAG----------TTTCATGTT----AAGATTG-TTAAGTTt
gi|10 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACAAAAT-ATACAGTACAT-----TACAATACAATACA------------ATATA--------------------TCAAAAAAGCATCACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTA
gi|5 : aTCATTATTAAGCTCCAATACTGAAGAGTTACA--------CA--TGG--------TAAAAAAGCAACATAAAATTATATAAAAC-AAAT-ATAAAGTACAG-----TTCAATACAATACA---------------TA----------------------AATAAAGTAACACTCGCTTTCACACCCGAACACAC----------------------AAACGCGCTTGCACTAAT-CAAAAG------TAATGT---------AA-------AAAT-----A-----------AAA-AA-------------AAAACGAAATAAGCATCG-AGCGTTTGAGGAGAAAATAGTAGTAAAAACGAACTTAAA-A-AT-TATCAAGGACTCGTCATTCAATCTAACATACGGTGGAAATACTTTATAATAATCTTTAAACATTTTACT--------GTT----------AATTGACGTATGCCAGCACATAGATGAGTTTTTTTACTTTTCATGTTTTAAAAGATTTATTAACTTGT
gi|14 : CTTTATTAACATCCAATACTGAAGAGTTAC--AA-AACATA--TGAGAAAAA--TGAAAAAGC-ACGTAAAATTATACAAAACAAAA
gi|12 : TTATTATCAGCCAATATTTTAGAGTTACAATC-AATATA--TGAA-AAAA----AAAATGTA---------TATACAAA--TAAACAATACAATATATA----TACAATACACTACA------------CT-CG--------------------TC-ATAAAGAAACGCACACACACACGCTTCATCGCACGCATGTATATAC
gi|9 : TATTAACTTCCAATACTAAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACAAAAT-ATACTGTACAT-----TACAATACAATACA------------ATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGTTTTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATTGGA-A-----------
gi|13 : AACCTCCAATACTGAAGAGTTACAAAA-AAAACAAATGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACAAAAT-ATACAGT
gi|6 : ATCTCCAATACTGAAGAGTTACAAAA---CACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAGCAAAAT-ATACAGTACATTACAATACAATACAATACA------------ATATA--------------------TCAATAAAGTAACACACATTTTCACACCCGAACACATGCATGCACATACA--------------CGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCACAAAT---G-A-----------AAA-AAA-CAAACAA-GACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-GAAA-TAGCAAGGAC
gi|4 : TTATACAA-AACACA--TGAA-AAAAAACGAAAA--CAACATAAAATCATACAAAAC---AT-ATANNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNATATA--------------------TAAATAAAGTAACACACTCTTTCGCGCCCGAACACACGCACGCACATAC------------------GTGCATTAAT-AAAAAGAAATGTTATTATTACCAGAAAAAAAAC-TCAA-TGAA--A-----------CAA-AAG-CAG--AA-AACAAAACGAACTAA----CAAAACTTATGAGGAGAACATGGTAATGAAAACGAACTGAAA-G-AAATAACAAGGACTCGTCATTCAATCCATTATGCGATGGAAAAACCTTATAATAGTCTTTAAACATTTTACTTGTAATTCTTCACATCTTAGAAATTGACGTAGGCCAACATATAGATGAGTTATTTGACTCTTTATGTT----AAGATTGATAAAGTTGT
gi|15 : acatgtttaatctttaAAGAAACACACATACGCTCGTGCGCACACATGTACGCAC--ACA--------CACACGCGt
gi|7 : GTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAAGAAAGACCTCAAATGAAA-ACAACAACAACAAAA-AAATCAG--AA-GATAAAACAAAAAAAA---CGAAACGTATGAGAAGAAAATTGTAATACAAACGAACTTAAACA-AA-TAGCAAGGACTCGTTATTCAACCCATCATGCGATGGAAATACTTTACACTAATATTTAAACATTTTACTTGTAATTCGTCGCATATTAGAAATTGACGTAAGCCAGCGCATAGACGAGTTA-TTGACTTTTCATGTT----AAGAGCGATAAAGTTGtaatattgtaat
gi|8 : TGCATTAATACAAAAGCAATGTAATTATTACCTGAAGAAAAACCTCAAAAAAGG-A-----------AAA-AAT-CA----------AAACGAAATAA----CGAAACTTATGAGGAGAATATAGTAATAAAAATAAACTTAAA-G-AAATAACAAGGACTCGTCATTCAAACAATCATGCGATGGAAATAC-TTATACTAATCTTTAAACATTTTACTTGTAATTCGTCACATTTTAGAAATTGACGTAGGCCAGAACATAGATGAGCTATTTGGCTTTCAATGTT----ATGATTTATAAA
gi|11 : GAGGAAAGGCCTCAAATGGGG-A-----------AAAAAAA-CAG--AA-GACAAAACGTAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAGTTCGTCACAGATTAGAAATTGACGc
Alignments
lowQualScore : 11 111111111 11111 33333333333333333333 111111111 22222222222222222 1111 1111
lowQualScore : 1 11 44 3 55 444444444 11111 0 0 66666666666666666666 1 11 0 777777777 4 8 44444444444444444 4 55 666 4 0 3333 8 4 8 0 3 33 0 1 0 2222
lowQualScore : . .. .. . .. ......... ..... . . .................... . .. . ......... . . ................. . .. ... . . .... . . . . . .. . . . ....
lowQualScore : 1 99 66 6 00 555555555 11111 2 2 11111111111111111111 4 55 3 222222222 0 0 88888888888888888 4 44 222 4 1 9999 9 4 9 4 4 22 1 4 9 1111
consensus : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
Reference ( family-1669 ) : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGACTTTTCATGTT----AAGATTGATAAAGTTGT
gi|1 : TCTTTATTAACTTCCAATACTGAAGAGTAACAAAA---CACA--TGAG-AATA--TGAAAAAACAACATACAATTATACAAAACA---------AAATNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATAAAGTAACACACATATTCACGCCCGAACACACGCACACACACACATACACACACACACGCGCGTGCATTAAT-CAAAAGCA-TGTAAATATTACCAGAAGAAAGACCTCAAATGAAA-A-----------AAG-AAA-CAG--AAG-ACAAAACGAAATAA----CAAAACATGTGAGAAGAAAATGGTAATACAAACGAACTGAAAGG-AA-TAGCAAGGACTCGTCATTCAACCCATCATGCAATGGAAATACCTTACAATCATCTTTAAACATTTTACTTTTAATTCGTCACATATTAGAAATTGACGTTAGCCAGTGAAGAGATGAG----------TTTCATGTT----AAGATTG-TTAAGTT
gi|10 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAAAAAAGCATCACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTA
gi|11 : aGAGGAAAGGCCTCAAATGGGG-A-----------AAAAAAA-CAG--AAG-ACAAAACGTAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAGTTCGTCACAGATTAGAAATTGACG
gi|12 : TTATTATCAGCCAATATTTTAGAGTTACAATC-AATATA--TGAA-AAAA----AAAATGT-ATATACAAATAAACAATACA---------ATATATA-------------TACAATACACTACACT-CG--------------------TC-ATAAAGAAACGCACACACACACGCTTCATCGCACGCATGTATATAC
gi|13 : AACCTCCAATACTGAAGAGTTACAAAA-AAAACAAATGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGT
gi|14 : CTTTATTAACATCCAATACTGAAGAGTTAC--AA-AACATA--TGAGAAAAA--TGAAAAAGC-ACGTAAAATTATACAAAACA---------AAA
gi|15 : AAGAAACACACAT----ACGCTCGTGCGCACACATGTACGCACA--------CACACACGCGT
gi|16 : CTGTTTA--AGCCTCCAATACTGAAGAGTTACACAA----ACA--TGAaatattgtaat
gi|2 : gtataatCTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACT---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAA-ACAAAACGAAATAA----CGAAACATATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACAGATTAAAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|3 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATTCAATTATACAAAACA---------AAATATACAGTACAT-----TACAATCCAATACAATATA--------------------TCAATAAAGCAACACACA-TTTCACGCCCGAACACACGCATGCACATACA--------CACATGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGAATA-----------AAA-AAA-CAG--AAGAAAAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAATGACTCGTCATTCAATCCATCATGCGATGGAAA-----TACAATTATCTTTAAACATTTTACTTGTAATTCGTCACGGATTAGAAATTGACGTAGGTGAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|4 : TTATACAA-AACACA--TGAA-AAAAAACGAAAA--CAACATAAAATCATACAAAACATATANNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNATATA--------------------TAAATAAAGTAACACACTCTTTCGCGCCCGAACACACGCACGCACATAC------------------GTGCATTAAT-AAAAAGAAATGTTATTATTACCAGAAAAAAAAC-TCAA-TGAA--A-----------CAA-AAG-CAG--AAA-ACAAAACGAACTAA----CAAAACTTATGAGGAGAACATGGTAATGAAAACGAACTGAAA-G-AAATAACAAGGACTCGTCATTCAATCCATTATGCGATGGAAAAACCTTATAATAGTCTTTAAACATTTTACTTGTAATTCTTCACATCTTAGAAATTGACGTAGGCCAACATATAGATGAGTTATTTGACTCTTTATGTT----AAGATTGATAAAGTTGTt
gi|5 : acatgtttaatctttaTCATTATTAAGCTCCAATACTGAAGAGTTACA--------CA--TGG--------TAAAAAAGCAACATAAAATTATATAAAACA---------AA-TATAAAGTACAG-----TTCAATACAATACA---TA----------------------AATAAAGTAACACTCGCTTTCACACCCGAACACAC----------------------AAACGCGCTTGCACTAAT-CAAAAG------TAATGT---------AA-------AAAT-----A-----------AAA-AA-------------AAAACGAAATAAGCATCG-AGCGTTTGAGGAGAAAATAGTAGTAAAAACGAACTTAAA-A-AT-TATCAAGGACTCGTCATTCAATCTAACATACGGTGGAAATACTTTATAATAATCTTTAAACATTTTACT--------GTT----------AATTGACGTATGCCAGCACATAGATGAGTTTTTTTACTTTTCATGTTTTAAAAGATTTATTAACTTGTt
gi|6 : ATCTCCAATACTGAAGAGTTACAAAA---CACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAGCA---------AAATATACAGTACATTACAATACAATACAATACAATATA--------------------TCAATAAAGTAACACACATTTTCACACCCGAACACATGCATGCACATACA--------------CGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCACAAAT---G-A-----------AAA-AAA-CAAACAAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-GAAA-TAGCAAGGAC
gi|7 : GTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAAGAAAGACCTCAAATGAAA-ACAACAACAACAAAA-AAATCAG--AAG-ATAAAACAAAAAAAA---CGAAACGTATGAGAAGAAAATTGTAATACAAACGAACTTAAACA-AA-TAGCAAGGACTCGTTATTCAACCCATCATGCGATGGAAATACTTTACACTAATATTTAAACATTTTACTTGTAATTCGTCGCATATTAGAAATTGACGTAAGCCAGCGCATAGACGAGTTA-TTGACTTTTCATGTT----AAGAGCGATAAAGTTG
gi|8 : TGCATTAATACAAAAGCAATGTAATTATTACCTGAAGAAAAACCTCAAAAAAGG-A-----------AAA-AAT-CA----------AAACGAAATAA----CGAAACTTATGAGGAGAATATAGTAATAAAAATAAACTTAAA-G-AAATAACAAGGACTCGTCATTCAAACAATCATGCGATGGAAATAC-TTATACTAATCTTTAAACATTTTACTTGTAATTCGTCACATTTTAGAAATTGACGTAGGCCAGAACATAGATGAGCTATTTGGCTTTCAATGTT----ATGATTTATAAA
gi|9 : TATTAACTTCCAATACTAAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACTGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGTTTTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATTGGA-A-----------c
Alignments
lowQualScore : 11 111111111 11111 33333333333333333333 111111111 22222222222222222 1111 1111
lowQualScore : 1 11 44 3 55 444444444 11111 0 0 66666666666666666666 1 11 0 777777777 4 8 0 44444444444444444 4 55 666 4 0 3333 8 4 8 0 3 33 0 1 0 2222
lowQualScore : . .. .. . .. ......... ..... . . .................... . .. . ......... . . . ................. . .. ... . . .... . . . . . .. . . . ....
lowQualScore : 1 99 66 6 00 555555555 11111 2 2 11111111111111111111 4 55 3 222222222 0 0 5 88888888888888888 4 44 222 4 1 9999 9 4 9 4 4 22 1 4 4 1111
consensus : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
Reference ( family-1669 ) : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|1 : TCTTTATTAACTTCCAATACTGAAGAGTAACAAAA---CACA--TGAG-AATA--TGAAAAAACAACATACAATTATACAAAACA---------AAATNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATAAAGTAACACACATATTCACGCCCGAACACACGCACACACACACATACACACACACACGCGCGTGCATTAAT-CAAAAGCA-TGTAAATATTACCAGAAGAAAGACCTCAAATGAAA-A-----------AAG-AAA-CAG--AAG-ACAAAACGAAATAA----CAAAACATGTGAGAAGAAAATGGTAATACAAACGAACTGAAAGG-AA-TAGCAAGGACTCGTCATTCAACCCATCATGCAATGGAAATACCTTACAATCATCTTTAAACATTTTACTTTTAATTCGTCACATATTAGAAATTGACGTTAGCCAGTGAAGAGATGAG----------TTTCATGTT----AAGATTG-TTAAGTT
gi|10 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAAAAAAGCATCACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTA
gi|11 : aGAGGAAAGGCCTCAAATGGGG-A-----------AAAAAAA-CAG--AAG-ACAAAACGTAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAGTTCGTCACAGATTAGAAATTGACG
gi|12 : TTATTATCAGCCAATATTTTAGAGTTACAATC-AATATA--TGAA-AAAA----AAAATGT-ATATACAAATAAACAATACA---------ATATATA-------------TACAATACACTACACT-CG--------------------TC-ATAAAGAAACGCACACACACACGCTTCATCGCACGCATGTATATAC
gi|13 : AACCTCCAATACTGAAGAGTTACAAAA-AAAACAAATGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGT
gi|14 : CTTTATTAACATCCAATACTGAAGAGTTAC--AA-AACATA--TGAGAAAAA--TGAAAAAGC-ACGTAAAATTATACAAAACA---------AAA
gi|15 : AAGAAACACACAT----ACGCTCGTGCGCACACATGTACGCACA--------CACACACGCGT
gi|16 : CTGTTTA--AGCCTCCAATACTGAAGAGTTACACAA----ACA--TGAaatattgtaat
gi|2 : gtataatCTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACT---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAA-ACAAAACGAAATAA----CGAAACATATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACAGATTAAAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|3 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATTCAATTATACAAAACA---------AAATATACAGTACAT-----TACAATCCAATACAATATA--------------------TCAATAAAGCAACACACA-TTTCACGCCCGAACACACGCATGCACATACA--------CACATGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGAATA-----------AAA-AAA-CAG--AAGAAAAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAATGACTCGTCATTCAATCCATCATGCGATGGAAA-----TACAATTATCTTTAAACATTTTACTTGTAATTCGTCACGGATTAGAAATTGACGTAGGTGAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|4 : TTATACAA-AACACA--TGAA-AAAAAACGAAAA--CAACATAAAATCATACAAAACATATANNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNATATA--------------------TAAATAAAGTAACACACTCTTTCGCGCCCGAACACACGCACGCACATAC------------------GTGCATTAAT-AAAAAGAAATGTTATTATTACCAGAAAAAAAAC-TCAA-TGAA--A-----------CAA-AAG-CAG--AAA-ACAAAACGAACTAA----CAAAACTTATGAGGAGAACATGGTAATGAAAACGAACTGAAA-G-AAATAACAAGGACTCGTCATTCAATCCATTATGCGATGGAAAAACCTTATAATAGTCTTTAAACATTTTACTTGTAATTCTTCACATCTTAGAAATTGACGTAGGCCAACATATAGATGAGTTATTTGACTCTTTATGTT----AAGATTGATAAAGTTGTt
gi|5 : acatgtttaatctttaTCATTATTAAGCTCCAATACTGAAGAGTTACA--------CA--TGG--------TAAAAAAGCAACATAAAATTATATAAAACA---------AA-TATAAAGTACAG-----TTCAATACAATACA---TA----------------------AATAAAGTAACACTCGCTTTCACACCCGAACACAC----------------------AAACGCGCTTGCACTAAT-CAAAAG------TAATGT---------AA-------AAAT-----A-----------AAA-AA-------------AAAACGAAATAAGCATCG-AGCGTTTGAGGAGAAAATAGTAGTAAAAACGAACTTAAA-A-AT-TATCAAGGACTCGTCATTCAATCTAACATACGGTGGAAATACTTTATAATAATCTTTAAACATTTTACT--------GTT----------AATTGACGTATGCCAGCACATAGATGAGTTTTTTTACTTTTCATGTTTTAAAAGATTTATTAACTTGTt
gi|6 : ATCTCCAATACTGAAGAGTTACAAAA---CACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAGCA---------AAATATACAGTACATTACAATACAATACAATACAATATA--------------------TCAATAAAGTAACACACATTTTCACACCCGAACACATGCATGCACATACA--------------CGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCACAAAT---G-A-----------AAA-AAA-CAAACAAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-GAAA-TAGCAAGGAC
gi|7 : GTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAAGAAAGACCTCAAATGAAA-ACAACAACAACAAAA-AAATCAG--AAG-ATAAAACAAAAAAAA---CGAAACGTATGAGAAGAAAATTGTAATACAAACGAACTTAAACA-AA-TAGCAAGGACTCGTTATTCAACCCATCATGCGATGGAAATACTTTACACTAATATTTAAACATTTTACTTGTAATTCGTCGCATATTAGAAATTGACGTAAGCCAGCGCATAGACGAGTTA-TTGACTTTTCATGTT----AAGAGCGATAAAGTTG
gi|8 : TGCATTAATACAAAAGCAATGTAATTATTACCTGAAGAAAAACCTCAAAAAAGG-A-----------AAA-AAT-CA----------AAACGAAATAA----CGAAACTTATGAGGAGAATATAGTAATAAAAATAAACTTAAA-G-AAATAACAAGGACTCGTCATTCAAACAATCATGCGATGGAAATAC-TTATACTAATCTTTAAACATTTTACTTGTAATTCGTCACATTTTAGAAATTGACGTAGGCCAGAACATAGATGAGCTATTTGGCTTTCAATGTT----ATGATTTATAAA
gi|9 : TATTAACTTCCAATACTAAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACTGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGTTTTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATTGGA-A-----------c
blockSeqs : A AA AA A AA TATANNNNN TACAA . C TT C A A GAAAACAACAACAACA A AT AAC A GCAT C A A C GA T TTAA
blockSeqs : A AA . . . . . . A CA C . A GGAATA . A G . A . . A C GA T .
blockSeqs : A A . . . . . . A TT C . . GGGGA . A G . . . . . C GA T .
blockSeqs : C A . . . . . . C CT C . . GGGGA . A G . . . . . T TC T .
blockSeqs : A A . . . . . . C CT C . . AAGGA . G G . . . . . T TA T .
blockSeqs : A A . . . . . . T TT . . . TGGAA . A G . . . . . . TT . .
blockSeqs : C A . . . . . . T TT . . . GAAA . T . . . . . . . .
blockSeqs : A A . . . . . . T T . . . GA . . . . . . . .
blockSeqs : A . . . . . C T . . A
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : A* ******************** C********
originalCons : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
finalCons : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAAA-ACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACAC--------ACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
Alignments
lowQualScore : 11 111111111 11111 33333333333333333333 111111111 22222222222222222 1111 1111
lowQualScore : 1 11 44 3 55 444444444 11111 0 0 66666666666666666666 1 11 0 777777777 4 8 0 44444444444444444 4 55 666 4 0 3333 8 4 8 0 3 33 0 1 0 2222
lowQualScore : . .. .. . .. ......... ..... . . .................... . .. . ......... . . . ................. . .. ... . . .... . . . . . .. . . . ....
lowQualScore : 1 99 66 6 00 555555555 11111 2 2 11111111111111111111 4 55 3 222222222 0 0 5 88888888888888888 4 44 222 4 1 9999 9 4 9 4 4 22 1 4 4 1111
consensus : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
Reference ( family-1669 ) : CTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCACGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACATATTAGAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|1 : TCTTTATTAACTTCCAATACTGAAGAGTAACAAAA---CACA--TGAG-AATA--TGAAAAAACAACATACAATTATACAAAACA---------AAATNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATAAAGTAACACACATATTCACGCCCGAACACACGCACACACACACATACACACACACACGCGCGTGCATTAAT-CAAAAGCA-TGTAAATATTACCAGAAGAAAGACCTCAAATGAAA-A-----------AAG-AAA-CAG--AAG-ACAAAACGAAATAA----CAAAACATGTGAGAAGAAAATGGTAATACAAACGAACTGAAAGG-AA-TAGCAAGGACTCGTCATTCAACCCATCATGCAATGGAAATACCTTACAATCATCTTTAAACATTTTACTTTTAATTCGTCACATATTAGAAATTGACGTTAGCCAGTGAAGAGATGAG----------TTTCATGTT----AAGATTG-TTAAGTT
gi|10 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAAAAAAGCATCACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTA
gi|11 : aGAGGAAAGGCCTCAAATGGGG-A-----------AAAAAAA-CAG--AAG-ACAAAACGTAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAGTTCGTCACAGATTAGAAATTGACG
gi|12 : TTATTATCAGCCAATATTTTAGAGTTACAATC-AATATA--TGAA-AAAA----AAAATGT-ATATACAAATAAACAATACA---------ATATATA-------------TACAATACACTACACT-CG--------------------TC-ATAAAGAAACGCACACACACACGCTTCATCGCACGCATGTATATAC
gi|13 : AACCTCCAATACTGAAGAGTTACAAAA-AAAACAAATGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACAGT
gi|14 : CTTTATTAACATCCAATACTGAAGAGTTAC--AA-AACATA--TGAGAAAAA--TGAAAAAGC-ACGTAAAATTATACAAAACA---------AAA
gi|15 : AAGAAACACACAT----ACGCTCGTGCGCACACATGTACGCACA--------CACACACGCGT
gi|16 : CTGTTTA--AGCCTCCAATACTGAAGAGTTACACAA----ACA--TGAaatattgtaat
gi|2 : gtataatCTCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACT---------AAATATACAGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGGG-A-----------AAA-AAA-CAG--AAA-ACAAAACGAAATAA----CGAAACATATGAGGAGAAAATGGTAATACAAACGATCTTAAA-G-AA-TAGCAAGGACTCGTCATTCAATCCATCATGCGATGGAAATACCTTACAATAATCTTTAAACATTTTACTTGTAATTCGTCACAGATTAAAAATTGACGTAGGCCAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|3 : TCTTTATTAACCTCCAATACTGAAGAGTTACAAAA-AACACA--TGAG-AAAA--TGAAAAAGCAACATTCAATTATACAAAACA---------AAATATACAGTACAT-----TACAATCCAATACAATATA--------------------TCAATAAAGCAACACACA-TTTCACGCCCGAACACACGCATGCACATACA--------CACATGCGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATGGAATA-----------AAA-AAA-CAG--AAGAAAAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-G-AA-TAGCAATGACTCGTCATTCAATCCATCATGCGATGGAAA-----TACAATTATCTTTAAACATTTTACTTGTAATTCGTCACGGATTAGAAATTGACGTAGGTGAGCGCATAGATGAGTTATTTGGCTTTTCATGTT----AAGATTGATAAAGTTGT
gi|4 : TTATACAA-AACACA--TGAA-AAAAAACGAAAA--CAACATAAAATCATACAAAACATATANNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNATATA--------------------TAAATAAAGTAACACACTCTTTCGCGCCCGAACACACGCACGCACATAC------------------GTGCATTAAT-AAAAAGAAATGTTATTATTACCAGAAAAAAAAC-TCAA-TGAA--A-----------CAA-AAG-CAG--AAA-ACAAAACGAACTAA----CAAAACTTATGAGGAGAACATGGTAATGAAAACGAACTGAAA-G-AAATAACAAGGACTCGTCATTCAATCCATTATGCGATGGAAAAACCTTATAATAGTCTTTAAACATTTTACTTGTAATTCTTCACATCTTAGAAATTGACGTAGGCCAACATATAGATGAGTTATTTGACTCTTTATGTT----AAGATTGATAAAGTTGTt
gi|5 : acatgtttaatctttaTCATTATTAAGCTCCAATACTGAAGAGTTACA--------CA--TGG--------TAAAAAAGCAACATAAAATTATATAAAACA---------AA-TATAAAGTACAG-----TTCAATACAATACA---TA----------------------AATAAAGTAACACTCGCTTTCACACCCGAACACAC----------------------AAACGCGCTTGCACTAAT-CAAAAG------TAATGT---------AA-------AAAT-----A-----------AAA-AA-------------AAAACGAAATAAGCATCG-AGCGTTTGAGGAGAAAATAGTAGTAAAAACGAACTTAAA-A-AT-TATCAAGGACTCGTCATTCAATCTAACATACGGTGGAAATACTTTATAATAATCTTTAAACATTTTACT--------GTT----------AATTGACGTATGCCAGCACATAGATGAGTTTTTTTACTTTTCATGTTTTAAAAGATTTATTAACTTGTt
gi|6 : ATCTCCAATACTGAAGAGTTACAAAA---CACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAGCA---------AAATATACAGTACATTACAATACAATACAATACAATATA--------------------TCAATAAAGTAACACACATTTTCACACCCGAACACATGCATGCACATACA--------------CGCGTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGACCACAAAT---G-A-----------AAA-AAA-CAAACAAG-ACAAAACGAAATAA----CGAAACGTATGAGGAGAAAATGGTAATACAAACGAACTTAAA-GAAA-TAGCAAGGAC
gi|7 : GTGCATTAAT-CAAAAGCA-TGTTAATATTACCAGAAGAAAGACCTCAAATGAAA-ACAACAACAACAAAA-AAATCAG--AAG-ATAAAACAAAAAAAA---CGAAACGTATGAGAAGAAAATTGTAATACAAACGAACTTAAACA-AA-TAGCAAGGACTCGTTATTCAACCCATCATGCGATGGAAATACTTTACACTAATATTTAAACATTTTACTTGTAATTCGTCGCATATTAGAAATTGACGTAAGCCAGCGCATAGACGAGTTA-TTGACTTTTCATGTT----AAGAGCGATAAAGTTG
gi|8 : TGCATTAATACAAAAGCAATGTAATTATTACCTGAAGAAAAACCTCAAAAAAGG-A-----------AAA-AAT-CA----------AAACGAAATAA----CGAAACTTATGAGGAGAATATAGTAATAAAAATAAACTTAAA-G-AAATAACAAGGACTCGTCATTCAAACAATCATGCGATGGAAATAC-TTATACTAATCTTTAAACATTTTACTTGTAATTCGTCACATTTTAGAAATTGACGTAGGCCAGAACATAGATGAGCTATTTGGCTTTCAATGTT----ATGATTTATAAA
gi|9 : TATTAACTTCCAATACTAAAGAGTTACAAAAAAACACA--TGAG-AAAA--TGAAAAAGCAACATACAATTATACAAAACA---------AAATATACTGTACAT-----TACAATACAATACAATATA--------------------TCAATAAAGCAACACACATTTTCTCGCCCGAACACACGCACGCACATACA--------CACACGCGCGTGTTTTAAT-CAAAAGCA-TGTTAATATTACCAGAGGAAAGGCCTCAAATTGGA-A-----------c