lowQualScore : 111111111111111111111111111 1111111111111 111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 777777777777777777777777777 1 55555555555555555555 1 11 11111 99999999999999999 1 33333 22222 11 1111 11 1 1 11 11 6666666666666666666666666666666666 333333 1 11 33333333333333333 444444444444444444444444444 2 2 2 99999999999999999999999999999999 5555555555555555555555555555555555 1 4444444444444444 11 333333 1111 1 333333333333333333333333333 111 444444444444444444444 1 11 11111111111 11 1 2222 1 11 1 444444444 22222 3333 33333333 2222 11 444444444444 1 33333333 1 2222 22 333 2 11 1 555555555 2 7777777777 22 222 22 333 22 2 1 2222222222222 11 2 1111111111111 11 1 44444444 222 44 333 11 1 222 2 222 77777777 1 22 2 1 1 1 1 2 333333 3333333333 22 1 77777777 333 1 2 000000000000 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 1 1 555555555555 111 22 11 222222 1 11 22222 1 333 1
lowQualScore : 0 7 1 000000000000000000000000000 7 3 5 88888888888888888888 0 0 5 5 44 66 22222 66666666666666666 4 55555 8 00000 99 66 4444 77 5 6 0 5 11 8 77 8 1111111111111111111111111111111111 1 777777 8 3 3 0 11 66666666666666666 222222222222222222222222222 3 3 3 0 4 0 99999999999999999999999999999999 6 2 6 8888888888888888888888888888888888 4 3 4444444444444444 1 44 6 333333 8888 0 6 7 5 666666666666666666666666666 444 3 3 333333333333333333333 1 3 99 0 1 7 7 55555555555 0 00 0 0 6 6 0 3 9 66 1111 9 55 6 44 5 4 4 4 99 5 666666666 22222 1111 44444444 3333 88 222222222222 3 0 8 33333333 2 88 4 3 4 4 5 3333 2 77 2 2 2 555 0 99 2 5 222222222 0 5555555555 77 3 222 77 111 77 0 4 2 3 4 5 4 9999999999999 3 4 2 88 2 2 4 8 0000000000000 2 6 88 4 2 7 33333333 000 88 2 2 33 6 111 3 88 4 0 2 2 999 0 000 6 2 22222222 0 77 6 0 5 2 7 3 5 4 0 0 3 4 2 000000 2 6 9999999999 77 5 6 4 3 22222222 2 555 4 5 0 222222222222 6 6 6 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 6 6 0 5 6 5 6 222222222222 222 3 11 88 999999 4 5 3 88 2 66666 55 3 55 7 3 333 1
lowQualScore : . . . ........................... . . . .................... . . . . .. .. ..... ................. . ..... . ..... .. .. .... .. . . . . .. . .. . .................................. . ...... . . . . .. ................. ........................... . . . . . . ................................ . . . .................................. . . ................ . .. . ...... .... . . . . ........................... ... . . ..................... . . .. . . . . ........... . .. . . . . . . . .. .... . .. . .. . . . . .. . ......... ..... .... ........ .... .. ............ . . . ........ . .. . . . . . .... . .. . . . ... . .. . . ......... . .......... .. . ... .. ... .. . . . . . . . ............. . . . .. . . . . ............. . . .. . . . ........ ... .. . . .. . ... . .. . . . . ... . ... . . ........ . .. . . . . . . . . . . . . . ...... . . .......... .. . . . . ........ . ... . . . ............ . . . .................................................................................................................. . . . . . . . . . ............ ... . .. .. ...... . . . .. . ..... .. . .. . . ... .
lowQualScore : 0 8 1 333333333333333333333333333 0 7 7 11111111111111111111 8 5 0 0 66 55 88888 77777777777777777 1 22222 0 88888 44 22 2222 44 6 4 6 2 00 2 55 8 3333333333333333333333333333333333 0 777777 3 7 3 7 33 77777777777777777 000000000000000000000000000 0 0 0 0 0 0 00000000000000000000000000000000 0 5 0 0000000000000000000000000000000000 0 3 7777777777777777 0 00 7 000000 0000 7 7 3 3 777777777777777777777777777 000 7 7 333333333333333333333 0 3 33 7 0 0 7 77777777777 2 55 0 2 5 5 8 5 8 88 2222 2 88 0 33 0 0 0 0 55 5 000000000 55555 5555 55555555 5555 00 000000000000 3 7 3 00000000 5 55 0 0 0 0 5 0000 5 55 5 5 5 000 0 00 5 5 000000000 0 0000000000 55 0 000 55 000 55 0 0 5 0 0 5 0 0000000000000 0 0 5 55 5 5 0 5 0000000000000 5 0 00 0 5 0 00000000 555 55 5 5 00 0 000 0 55 0 5 5 5 000 0 555 0 5 55555555 5 55 0 0 5 5 0 0 0 0 5 0 0 0 5 000000 5 0 5555555555 55 5 0 0 0 55555555 5 000 0 5 0 555555555555 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 0 0 555555555555 555 0 00 00 000000 0 0 0 00 5 55555 55 0 55 0 0 555 5
consensus : AAAAACCGATGACAACGGGCAGCTGTGTAATGA-CGT--G--A--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAG----T---TCT-GTACTGTAACCATATCTGTTTT-A-CTGC-NAACCAAACAACAC-AACCAAGCGCAGAGC--TGTC--TGAAATCAACTCCTAGAAATGAAA-G-TTAT-TTAAATA---TTTTA-ATTTT-ACAAATATAGTACTGTTCAGTCAATTTTTAAATACCGTTT--CAGACTGGGGATCCAGATTTGACAAAATATG--ATTA-T----CNT--GCGT-TTCGNCG--GT-TACTTA---A--AATATACAGGNG-TAAAAGTAACCACCATACA-AA-ATA-GAAAGCAGCCATATA-TTATA---ATAAANN-ATGNTTAC-CAATGGNTNCTGTTTAAACACAGANACATTGTAAGTACACATGAAAAGTACAGGTGCGGAGTGTTTGCGGTGTGNTGTTGCATTNTCCCATCTCAGTACAATATAGATATATACAGTTCCGGCGNATCAATTTAATATTTTGNCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTNAACAACCGAA-TAAN-CAATCT-TAAACGGTCG-CATA-C-------------------------TTTCCGATT-GAANCAATTCGTGTCGTG-A-ACGGATGAAANA-AT---AACATAAAAA-ATC-TGACTTACGTGTACATTNTTAAGTTTCC-CTGG-GCTGCAACTCCNNGC-GTCTGCTTNGACAATCACACAAANCCTGCNTCGCAGAC----GACATAACCAAGGATATACNCGTAGATGGCGACCTGCNAATGANTNGCNTTTATATAAAAAAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCANTGAGTTCGGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGTTGCTGTTT-TAGACANCTTNTTANTNCANTAANTGGTATTCAATAGATTGGGGNTTGTCCGTGCNCGCNATGGCTATCGGGATTNCCAGTTTAAAAACCAAGTTTTCAATCAGNTAAAAACGGATTTCCTCTCAAGGTTAATCTAANTTAAAGTGAATATTCAACGGCAGGTNGCAATTGCTGGTAGCAGTTCAGCAATAGTACAACCGNTGNCTNTNGAATGTGTNCACGACNATTAATAATGCATGNANGCNATTGTGTTGAAACAATGGCCGCCGCAGNANACNAAGCCCGAAACGAGAATCAGCAGTGTGNACTTCCGTCCATGACTACATANANGTAAGGGAAAATATTTCACAAAACATTATTAAATNGAATGAAAGCGATACAAATTGNAATGAAATATNACAAA-AAACAGACAATACAACACANTTTAACTCACGCCACCATCCCANGTCCAANAACANAATANGTCCTTCCCGCTTAGAANNCACAGCGCGAAATGGGGAAGACAGCGGGNTGCTTTATTCTCGTCAAACGTCCGGNTGCACTGTCACGTGACCTTNGACCAATCANGANGCTANCCGGAAAANGACGAGGGCTCTCGGTTGGTCGNACGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGTTTGAGTTGATTTTTTGACACGTCTNAANATAAATCAGGTGCCAAGNTATAACAANGCAACGTTGATTACTTAATGGTGCCTTGCAATGAATCGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAACCATTAAAAAACACGCACCANANTNTAAACATTACANAAGAAAATAATCNTTTACCAGGTGCGGGTTCAGGCTAGGGGCATTGTACAGGATANGGAAGGGTNTCTTATTTTCTGTTNTTTTTCTTTCTTTTTGTTCCGNTCTCCGTTATTTNCNNCAGTTCACCGTGAAACAGTTCCNCCTGTTTCTATGAC
Reference ( gi|1 ) : AAAAAT-AATGATAACGGACAGCTG-GTAATAAACAT--G--A--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAG----T---TTG-GTACTGTAACCATTTCTGTTTT-A-CTGC-TAACCAAACAATAC-GACAAAGCGCAGTGCCATTTCCTTG----CAACTTCTAAAAATAAAAGGTTTAT-TTAAATA---TTTTA-ATTTG-ACAAATATAGTATAGCTCAG-CAATTTTCAAATACCATTT--TAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTA-A----CCT--GCAT-TTCAATG--GT-TATTTA---A--AATATACTGGGG-TAAAGGTAACCATCATACAAAAGATAGGAAAATAGCCATATAGCTATA---ATAAAAG-ATAAATACTTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG-------CAGGT------TGTT-----TAT-TTGTTGTATTGTCCTATCTCAGTACA-TATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGACGGTCGACATA-C-------------------------TTTCCAATTAGAACCAATTTGTGTCATGAATACGGATGGAAGA-AT---AATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGAA-------------GTGTAGATTTCTGTTTATGACTACATATACGTTAG-AAA----TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTT--TTCTCGCC-AATGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAG--TGAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCT---ACAATGCAATGTTGATTACTTAATGG-GC------------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCACCCC----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATTAAA----ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|6 : AAAAAC-AATGAAAACGGGCAGCTATGTAATG--TGT--G-----CGA----GACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCT----GAAG----CAAGTTATGTACTGTCACCATTTCTGTTTT-AACTGC-CAACCAAACAACACAGAC------CAGT----CTTCAAT-----CAACTCCTAAAAATAAAATGCTTAT-TTAAGTA----TTTA-TTTTT-ACAAATATGGTACTGTTCAG-C-TTTTTTAAATACTGTAT--CTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCTT--G-GT-TTAAACGCTGTGTACTTATACA--AATATACAGGAG-TAAAAGTAGTC--CCTACACAATATA----------CATATA--TAC----ATGGAAGTGTGTTTACATAATGGCTCCTG-TTAAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGT-GTGTTGCATTCTCCCATTTCAGTACA----AG-------CAG---TGACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAGCGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTTAATTTTCCAATTTGTAACAATTTGTTTTGTG---ACAAA---AATA-AT---AACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAAGATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|9 : aAAAAATCGATGACAACAGGCAGCTG-TT--TAA-CGTCTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGG----T---CCT-GTACTGTAACCATATCTGTTTT-A-CTGC-AAACCAAACAACAC-AACCAAGTGCAGAGC--TGTC--TGAAATCAACTTCT-GAAATGAAA----TATCTTAACTT---TTATA-TTTTT-ACAAATAAAGTACGTTTTAATCAATTTT-AAAT-CCGTTTGATAAAATG
gi|11 : tgtcattcatcgttttactttacattaactatcaacctagtatattatAAAAGC-AATGCCAACAGATAGTTGTGTAA----CTT--GTAA--CAA----GACTGAGTAGAGAACTGAACATTGTAATA-CTTACCATCT--------------------GTGCTGCAACCTTATCTGTTTTGA-CTGC-CAACCAAAC---AC-AACCAAGCGCAtttgatcttcatt
gi|3 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgAAAATCGATGACAAGGGTCAGCTG-TT--TAA-CGTCTG--ATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAG----T---TCT-GTACTGTAACCACATCTGTTTT-A-CTGCAAAACCAAACAACAC-AACCAAGCGCAGAGC--TGTCTGTAAT--CAACGCCTAAAATTAGA-----TGT-TTTAAT----TTTTATACTTATACAAATATAGTAGTTTTCAATCAATTTT-AAAT-CCGTTT--CAGACTGGGAACCCG--TTTGATAAAATGTGTTATCA-T----CATTAGCATATACGCTG--TA-CACTTA---GTCAATTTACAGGTG-CAAAAGCAACCACTAT-----------GAAAGCAGCCTTGTACTTTTACGTATAAAGA-ATAATTATTCAAaaac
gi|5 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAAAATCGATAACAACGGGCAGATT-TTAACGTCTAT--T--A--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAG----T---TCT-ATACTGTAACCTTATCTGTTTT-A-CTGC-AAACCAAACAACAC-AA-AAAGCGCAGAGC--TGTC--TGAAATCAACTCCT-GAAATGAAAa
gi|8 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAC-AATAGCAACGGACAACTGTGTAACGTGTAT--G--A--CAAT-AAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCT----GAAGCAAAC---TAT-GTACTGCAACAATATCTGTTTT-A-CAGC-CAACCAAACA------ACCAATCGCAAAACTGTCTGCAAT----CAACTTCTGAAAATAA------TGT-TTAAACAAGTTTTTA-ATTCT-GCAAATATGGTCTTGTTCAC-CCACTTGTAAATACCTTTT--CAAGCTTGAGATCCAGGTATGATAAAA
gi|2 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagaaaactggcACGGACAGCTG-GTAATAAACAT--G--A--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAG----T---TCG-GTACTGTAACCATTTCTGTTTT-A-CTGC-TAACCAAACAATAC-AACAAAGTGCTGGGCCATTTCCTTG----CAACTTCTAAAAATAAAAGGTTTAT-TTAAATA---TTTTA-ATTTG-ACAAATATAGCATAGCTCAG-CAAATTTCAAATACCATTT--TAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-T----CCT--GCAT-TTCATTG--GT-TATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGAAGATAGGAAAATAGCCATATAGTTATA---AGAAACT-ATGGATA----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACATA-------CAGGT------TGTT-----TATGTTGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGACGGTCGACATA-C-------------------------TTTCCAATTAGAACCAATTTGTGTCATGCATACGGATGAAAGA-AT---AACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGAC-TGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA----TTTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTT--TTCTCGTC-AATGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAG--TGAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCT---ACAATGCAATGTTGATTACTTAATGG-GC------------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATActgtacatcttcgttggtaggtacgctgtacactttacataata
gi|4 : GTAACCTTATCTGTTTT-A-CTGC-AAACCAAACAACAC-AA-AAAGCGCAGAGC--TGTC--TGAAATCAACTCCT-GAAATGAAA
gi|4 : AA-CCTTATCT------GTTTT----ACTG-CAA--ACCAAA-CAACACAA-----AAA--G-CG-CAGAGC-------------------------TGTCTGA----AATCAACTCCTGAAATGAA-----ATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTA-TTA-ATA---------TAA--AC-CATTCGTA----CATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTGT--------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTG-TTTT---------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATACAA-GCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAG-GAAAATATTT---AAAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA--AATAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGTCTTT-CCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACG-TCGATTGCACTGTCACGTGACTTTGGACCAAT-AAAAAGCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGA-TTTTTGACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACG-TGATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCtgacaaacatgagaatataaaatatctgacatacgtgtacattattaagctgtaacttcatgtgtcttttatgacaaccacacaaattctgccacgcagactaaagccataaccaatggtacacgtgcaaatggcgacctgctaatgaatagtattaatataaaccattcgtacatttgattcaaaagttcgattaacctttatctgtactatttcactgtattgctgtatcttattaatgcaataaatggttttaataaatgattgtccatgcgcgcaatggctatcggaatttctaatttaaaaaccaagttttcaatcaataaaaattgttttttaatctaaatatattcaacggtaatgcaattgctggtagcagttcaataataatacaaccgatggctgtaaaagtgtacacgactataaatggaagctagtgttgaaacaatggccactgcagaatacaagcccgaaacgagaatcagcagtgtgcacttccgtccatgtacataaaggtaaggaaaatatttaaaatattattaaattgaatgaaaataatacaaattagaataaaatatgataaaaatagacaatacaacacagtttaactcacgccaccatcctatgtccaaaaataaaataggtctttccacttagaacgcacaacttgaaatggggaagacagtgggctgctttattctcgtcaaacgtcgattgcactgtcacgtgactttggaccaataaaaagctagccggaaaaagacgagggttttctattggtcaacggtttcccgcgaaaaatatcacgtgatgcaagtagcttaagtttgagttgatttttgacatatctaaacataaatcaggtgctaaaatataacaaagtaacgtgattacttaatgatgccttgcaatgaatcgtttaaaggattaagaatggagcgatcaaaaagctatttgtga
gi|13 : gtGCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTAgatcaaaaagctatttgtga
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTGTTTATAtctgtattatttgactgtgttgctgtttata
gi|12 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaTATCAACCAT--AA----ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|14 : gCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGAC
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG
Alignments
lowQualScore : 111111111111111111111111111111111 1111111111111 111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 33333333 1111 11 11111 11 44444 1111 222222 11 22222 11 1 11111 222222 11 444444444444 3 11111 444 2 2 4444444 77777777777777777777 1 3333333 1111 111111 1 3 1 111111111111111111111111111111111 3333 1 1 1 4444444 1111 11 1111 1 2 33 333 2 11111 2 77777777 33 444444444 33 2 1 0000000000000 44444444 1 333 2 77777777 33 2 1 2 33 77777777 333 000000000000000 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 444444444444 1
lowQualScore : 7 44444 1 3 99999999 777 77 5 5555 0 5 5 66 0 5 33 55555 33 2 0 44444 6 5555 6 6 55 111111 7 0 1 33 3 55555 1 33 44 0 555 77777 666666 11 1 3 555555555555 88 0 3 88888 22 55 222 1 11 7 3 1 3 8888888 55555555555555555555 1 7 7 0 999 222 6 1 0 0 3333333 7777 1 3 2 666666 3 0 2 3 0 0 444444444444444444444444444444444 1 2 22 7777 22 0 0 1 0 0 2 1 3 5555555 22 8 1 3 1 6 33 7777 5 0 1 0 6 11 1 1 11 11 7 0 7 6 0 7 88 4444 0 4 0 3 7 1 1 1 1 1 1 0 7 7 1 0 00 1 1 0 1 777 3 77 66666 3 1 22222222 00 77 6 1 000000000 0 0 0 00 3 0 11 1 1 1 7 1 0 44 7 7 1 1 1 7 11 1 4 11 5555555555555 11 0 11 7 1 1 44444444 6 11 1 0 1 3 7 888 1 7 0 11 1 1 1 6 3 3 3 22 0 11111111 1 11 00 3 0 2 1 0 0 11 6 1 1 3 1 11 0 0 77 6 1 6 00 0 7 1 1 11111111 1 777 1 0 7 333333333333333 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 2 2 0 444444444444 0 1 1 1 1 1 7 0 0 11 1 7 1 6 0 77 1 22 6 0 5 1 0 0
lowQualScore : . ..... . . ........ ... .. . .... . . . .. . . .. ..... .. . . ..... . .... . . .. ...... . . . .. . ..... . .. .. . ... ..... ...... .. . . ............ .. . . ..... .. .. ... . .. . . . . ....... .................... . . . . ... ... . . . . ....... .... . . . ...... . . . . . . ................................. . . .. .... .. . . . . . . . . ....... .. . . . . . .. .... . . . . . .. . . .. .. . . . . . . .. .... . . . . . . . . . . . . . . . . .. . . . . ... . .. ..... . . ........ .. .. . . ......... . . . .. . . .. . . . . . . .. . . . . . . .. . . .. ............. .. . .. . . . ........ . .. . . . . . ... . . . .. . . . . . . . .. . ........ . .. .. . . . . . . .. . . . . . .. . . .. . . . .. . . . . ........ . ... . . . ............... . .................................................................................................................. . . . . ............ . . . . . . . . . .. . . . . . .. . .. . . . . . .
lowQualScore : 6 33333 1 2 99999999 222 11 0 6666 8 0 0 00 1 0 88 99999 44 7 1 55555 7 2222 7 7 88 000000 3 8 8 88 0 00000 0 88 55 0 000 55555 000000 22 0 2 222222222222 55 0 2 00000 00 00 333 0 77 3 7 0 7 7777777 77777777777777777777 0 3 3 7 333 333 7 0 7 0 0000000 2222 0 2 0 000000 2 0 5 2 0 0 222222222222222222222222222222222 0 0 22 0000 88 8 0 0 0 0 5 0 2 8888888 00 0 0 2 0 0 22 0000 6 8 0 7 7 77 0 0 77 33 3 7 3 7 7 3 33 7777 0 0 0 2 7 0 0 0 0 0 0 7 3 3 0 7 00 0 0 7 0 000 7 77 77777 7 0 00000000 33 33 7 0 333333333 7 7 7 77 3 7 77 0 0 0 3 0 7 77 3 3 0 0 0 3 77 0 0 33 7777777777777 77 7 33 3 0 0 77777777 7 77 0 7 0 3 3 000 0 3 7 77 0 0 0 7 7 7 7 00 7 00000000 0 33 77 7 7 0 0 7 7 77 7 0 0 7 0 77 7 7 77 7 0 7 77 7 3 0 0 77777777 0 777 0 7 3 000000000000000 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 5 7 777777777777 7 0 0 0 0 0 3 7 7 77 0 3 0 7 7 77 0 00 7 7 0 0 7 7
consensus : AAAAANCG-----ATGACAACGGGCAGCTGTGTAACG-N-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-A-CTGC-NAACCAAACAACACA-ACCAAGCGCAGAGC--TGTC--TGNAATCAACTCCTAAAAATAAAA-G--TTAT-TTAAATA---TTTTA-ATTT-TACAAATATAGTATNGTTCAGCCAA-TTTTAAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TTCANTG--GT-TACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACAAA--A--TA-G-AAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-TAATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACATG-----TACAGGT------TGTTTGC--TGTGTTGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGACGGTCGACATA-CTTTCC-------------GATTAGA-------------ACCAATTTGTGTCGTG-A--ACGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTG-GTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAA---AAG-TTTCAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCT-AT-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGA-------------AGTGTAGATTTCCGTTTATGACTACATATACGTAAGGGAA---ATTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTT--TTCTCGTC-AACGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAG--TGAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCT---ACAATGCAACGTTGATTACTTAATGG-GC------------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA-AA-ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
Reference ( family-1654 ) : AAAAACCG-----ATGACAACGGGCAGCTGTGTAATG-A-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-A-CTGC-NAACCAAACAACACA-ACCAAGCGCAGAGC--TGTC--TGAAATCAACTCCTAGAAATGAAA-G--TTAT-TTAAATA---TTTTA-ATTT-TACAAATATAGTACTGTTCAGTCAATTTTTAAATACCGTTTCAGACTGGGGATCCAGATTTGACAAAATATG--ATTA-----TCNT--GCGT-TTCGNCG--GT-TACTTA---A--AATATAC-AGGNGTAAAAGTAACCACCATACAAA--A--TA-G-AAAGCAGCCATATA-TTATA---ATAAANNATGNTTAC-CAATGGNTNCTGTTTAAACACAGANACATTGTAAGTACACATGAAAAGTACAGGTGCGGAGTGTTTGCGGTGTGNTGTTGCATTNTCCCATCTCAGTACAATATAGATATATACAGTTCCGGCGNATCAATTTAATATTTTGNCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTNAACAACCGAA-TAAN-CAATCT-TAAACGGTCG-CATA-CTTTCC-------------GATT-GA-------------ANCAATTCGTGTCGTG-A--ACGGATGAA-ANAATAACATAAAAA-ATC-TGACTTACGTGTACATTNTTAAGTTTCC-CTG-G-GCTGCAACTCCNNGC-GTCTGCTTNGACAATCACACAAANCCTGCNTCGCAGAC----GACATAACCAAGGATATACNCGTAGATGGCGACCTGCNAATGANTNGCNTTTATATAAAAAAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCANTGAGTTCGGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGTTGCTG-TTTTAGACANCTTNTTANTNCANTAANTGGTATTCAATAGATTGGGGNTTGTCCGTGCNCGCNATGGCTATCGGGATTNCCAGTTTAAAAACCAAGTTTTCAATCAGNTAAAAACGGATTTCCTCTCAAGGTTAATCTAANTTAAAGTGAATATTCAACGGCAGGTNGCAATTGCTGGTAGCAGTTCAGCAATAGTACAACCGNTGNCTNTNGAATGTGTNCACGACNATTAATAATGCATGNANGCNATTGTGTTGAAACAATGGCCGCCGCAGNANACNAAGCCCGAAACGAGAATCAGCAGTGTGNACTTCCGTCCATGACTACATANANGTAAGGGAAAATATTTCACAAAACATTATTAAATNGAATGAAAGCGATACAAATTGNAATGAAATATNACAAA-AAACAGACAATACAACACANTTTAACTCACGCCACCATCCCANGTCCAANAACANAATANGTCCTTCCCGCTTAGAANNCACAGCGCGAAATGGGGAAGACAGCGGGNTGCTTTATTCTCGTCAAACGTCCGGNTGCACTGTCACGTGACCTTNGACCAATCANGANGCTANCCGGAAAANGACGAGGGCTCTCGGTTGGTCGNACGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGTTTGAGTTGATTTTTTGACACGTCTNAANATAAATCAGGTGCCAAGNTATAACAANGCAACGTTGATTACTTAATGGTGCCTTGCAATGAATCGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAACCATTAAAAAACACGCACCANANTNTAAACATTACANAAGAAAATAATCNTTTACCAGGTGCGGGTTCAGGCTAGGGGCATTGTACAGGATANGGAAGGGTNTCTTATTTTCTGTTNTTTTTCTTTCTTTTTGTTCCGNTCTCCGTTATTTNCNNCAGTTCACCGTGAAACAGTTCCNCCTGTTTCTATGAC
gi|1 : AAAAATA-----ATGATAACGGACAGCTG-GTAATA-AAC-ATGA--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAGTTTGGTACTGTAACCATTTCTGTTTT-A-CTGC-TAACCAAACAATACG-ACAAAGCGCAGTGCCATTTCCTTG----CAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTA-ATTT-GACAAATATAGTATAGCTCAG-CAATTTTCAAATACCATTTTAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTA-----ACCT--GCAT-TTCAATG--GT-TATTTA---A--AATATAC-TGGGGTAAAGGTAACCATCATACAAAAGA--TAGG-AAAATAGCCATATAGCTATA---ATAAAAGATAAATACTTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG-------CAGGT------TGTTTAT------TTGTTGTATTGTCCTATCTCAGTAC-ATATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGACGGTCGACATA-CTTTCC-------------AATTAGA-------------ACCAATTTGTGTCATG-AATACGGATGGA-AGAATAATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTG-GTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAA---AAG-TTTCAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCT-AT-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGA-------------AGTGTAGATTTCTGTTTATGACTACATATACGTTA--GAA---ATTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTT--TTCTCGCC-AATGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAG--TGAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCT---ACAATGCAATGTTGATTACTTAATGG-GC------------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCACCCC----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATTAAA----ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|11 : AAAAGCA-----ATGCCAACAGATAGTTGTGTAA-----C-TTGT----AACAAGACTGAGTAGAGAACTGAACATTGTAATA-CTTACCA------------TCTGTGCTGCAACCTTATCTGTTTTGA-CTGC-CAACCA---AACACA-ACCAAGCGCAAAAC--
gi|12 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgTATCAACCAT-----AA-ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|13 : g-GCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTA
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTG-TTTtctgtattatttgactgtgttgctgtttata
gi|14 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGACata
gi|2 : ACGGACAGCTG-GTAATA-AAC-ATGA--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAGTTCGGTACTGTAACCATTTCTGTTTT-A-CTGC-TAACCAAACAATACA-ACAAAGTGCTGGGCCATTTCCTTG----CAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTA-ATTT-GACAAATATAGCATAGCTCAG-CAAATTTCAAATACCATTTTAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-----TCCT--GCAT-TTCATTG--GT-TATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGA--AGATA-GGAAAATAGCCATATAGTTATA---AGAAACTATGGATA----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACA-------TACAGGT------TGTT-----TATGTTGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGACGGTCGACATA-CTTTCC-------------AATTAGA-------------ACCAATTTGTGTCATGCAT-ACGGATGAA-AGAATAACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTG-GTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGA-CTGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAA---AAG-TTTCAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCT-AT-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGA-------------AGTGTAGATTTCCGTTTATGACTACATATACGTAAGGAA----ATTTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTT--TTCTCGTC-AATGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAG--TGAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCT---ACAATGCAATGTTGATTACTTAATGG-GC------------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATA
gi|3 : AAAATCG-----ATGACAAGGGTCAGCTGTTTAACG-T-C--TGATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCACATCTGTTTT-A-CTGCAAAACCAAACAACACA-ACCAAGCGCAGAGC--TGTC--TGTAATCAACGCCTA-AAATTAGA-----TGT-TTTAAT----TTTTATACTTATACAAATATAGTAGTTTTCAATCAA-TTTTAAAT-CCGTTTCAGACTGGGAACCC--GTTTGATAAAATGTGTTATCA-----TCATTAGCATATACGCTG--TA-CACTTA---GTCAATTTAC-AGGTGCAAAAGCAACCACTAT-------------G-AAAGCAGCCTTGTACTTTTACGTATAAAGAATAATTA
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAA-CCTTATCT------GTTTTA----CTGCAAAC---CAAA-CAACACAA-----AAA--G-CG-CAGAGCTGTCT-------------GA----A-------------ATCAACTCCTGAAATG-A--AATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG-------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTATTAATATAAA-------------C-CATTCGTAC----ATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTG-T-------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTGTTTT----------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATAC-AAGCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAGG-AAAATATTT---AAAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA-AA-TAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGT-CTTTCCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACGT-CGATTGCACTGTCACGTGACTTTGGACCAAT-AAAAAGCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGA-TTTTTGACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACG-TGATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCGttcaaa
gi|5 : gtAAAATCG-----ATAACAACGGGCAGAT-TTTAACG-T-CTATTA--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAGTTCTATACTGTAACCTTATCTGTTTT-A-CTGC-AAACCAAACAACACA-A-AAAGCGCAGAGC--TGTC--TGAAATCAACTCCT-GAAATGAAA-atcaaaaagctatttgtga
gi|6 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAAAAAACA-----ATGAAAACGGGCAGCTATGTAATG---T-GTG-------CGAGACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAGTTATGTACTGTCACCATTTCTGTTTT-AACTGC-CAACCAAACAACACAGACCA-------------GTC--TTCAATCAACTCCTAAAAATAAAATGC-TTAT-TTAAGTA---TTT-A-TTTT-TACAAATATGGTACTGTTCAGCT--TTTTTAAATACTGTATCTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCTT--G-GT-TTAAACGCTGTGTACTTATACA--AATATAC-AGGAGTAAAAGTAGTCCCTACACAAT--A--TA-----------CATATA-T-ACA---TGGAAGTGTGTTTACATAATGGCTCCTGTT-AAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGTG-TGTTGCATTCTCCCATTTCAGTACAA-----------GCAGT---GACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAGCGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTT-AATTTTCCAATTTGTAACAATTTGTTTTGTG----ACA---AAA-ATAATAACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAA-GATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|8 : AAAACTGGCACAATAGCAACGGACAACTGTGTAACGTG-T-ATGA--CAA-TAAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAACTATGTACTGCAACAATATCTGTTTT-A-CAGC-CAACCAA-----ACA-ACCAATCGCAAAAC--TGTC--TGCAATCAACTTCTGAAAATAA-------TGT-TTAAACAAGTTTTTA-ATTC-TGCAAATATGGTCTTGTTCA-CCCACTTGTAAATACCTTTTCAAGCTTGAGATCCAGGTATGATAAAA
gi|9 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagAAAAATCG-----ATGACAACAGGCAGCTGTTTAACG-T-CTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGGTCCTGTACTGTAACCATATCTGTTTT-A-CTGC-AAACCAAACAACACA-ACCAAGTGCAGAGC--TGTC--TGAAATCAACTTCT-GAAATGAAA-----TATCTTAACTT---TTATA-TTTT-TACAAATAAAGTACGTTTTAATCAA-TTTTAAAT-CCGTTTctgtacatcttcgttggtaggtacgctgtacactttacataata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 11 1111 1 3333 111 11 2222222222222222 11 222222 11 444444444 111 2222 1 1 1 5555555 333333 44444444 11 1 3333333 1111 111111 1 1 1 999999999999999999999999999999 22222222222 1 1 1 1111 1 1 2 11 222 1 11111 1 44444444 11 11 111 11 1 7777777777777 22 1 1 111 1 44444444 11 11 1 1 11 44444444 222 666666666666666 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 3333333 11 33
lowQualScore : 1 1 3 000000 66 44 5 5555 0 0 66 0 5 11 7 3333 6 1 111 3 1 5 6 7 0 1 3 11 1 3333333333333333 1 11 8 666666 44 0 3 555555555 11 99 777 1 11 22 3333 2 3 3 5555555 888888 44444444 44 999 6 0 0 3333333 7777 0 3 555555 3 0 0 2 0 3 0 666666666666666666666666666666 0 22 88888888888 0 1 0 0 1 1 3 2 33 44 8 1 3 1 6 1 7777 5 0 0 0 6 7 7 9999 6 7 0 2 6 0 7 7 6 0 1 333 6 7 7 88 333 3 6 66666 3 1 88888888 88 6 88 777 88 3 0 7 0 1 7 7 7 7 3333333333333 7 77 3 6 0 3 7 777 7 1 6 1 3 3 0 88888888 1 88 44 6 0 2 3 0 6 1 1 6 88 7 88888888 333 0 7 111111111111111 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 1 0000000 88 0 7 7 6 44 3
lowQualScore : . . . ...... .. .. . .... . . .. . . .. . .... . . ... . . . . . . . . .. . ................ . .. . ...... .. . . ......... .. .. ... . .. .. .... . . . ....... ...... ........ .. ... . . . ....... .... . . ...... . . . . . . . .............................. . .. ........... . . . . . . . . .. .. . . . . . . .... . . . . . . . .... . . . . . . . . . . . ... . . . .. ... . . ..... . . ........ .. . .. ... .. . . . . . . . . . ............. . .. . . . . . ... . . . . . . . ........ . .. .. . . . . . . . . . .. . ........ ... . . ............... . ................................................................................................................. . . . ....... .. . . . . .. .
lowQualScore : 0 1 2 888888 99 44 0 6666 8 0 00 1 0 77 1 2222 7 8 777 7 0 2 7 3 8 4 8 00 0 8888888888888888 0 00 0 000000 22 2 2 222222222 55 55 555 0 22 22 5555 3 3 3 3333333 333333 33333333 77 333 7 7 0 0000000 2222 8 2 888888 2 0 0 5 2 0 0 222222222222222222222222222222 2 22 22222222222 0 0 0 0 0 0 2 5 88 66 0 0 2 0 0 4 0000 6 8 2 7 7 3 3 0000 7 3 7 0 7 7 3 3 7 0 0 888 7 3 3 33 333 3 7 00000 3 0 33333333 33 7 33 777 33 3 7 3 7 0 3 3 3 3 3333333333333 3 00 3 7 7 3 3 777 3 0 7 0 7 3 7 33333333 0 33 00 7 7 0 3 7 7 0 0 7 33 3 33333333 333 7 3 777777777777777 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0000000 33 7 3 3 7 00 7
consensus : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TTCGNTG--GT-TACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACAAAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACAT-----G-ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGG-AAAT-TTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATT--AAA--ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
Reference ( family-1654 ) : AAAAANCGATGACAACGGGCAGCTGTGTAACGN-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCTGTCTGNAATCAACTCCTAAAAATAAAA-G--TTAT-TTAAATA---TTTTAATTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TTCANTG--GT-TACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACAAAA--TAG-AAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACAT-----GTACAGGT------TGTTTGCTGTGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGGAAAT-TTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAAAA--ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
gi|1 : AAAAATAATGATAACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAGTTTGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACG-ACAAAGCGCAGTGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGTATAGCTCAGC-AATTTTCAAATACCATTTTAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTA-----ACCT--GCAT-TTCAATG--GT-TATTTA---A--AATATAC-TGGGGTAAAGGTAACCATCATACAAAAGATAGGAAAATAGCCATATAGCTATA---ATAAAAGATAAATAC-TTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACAT-----G--CAGGT------TGTTTATT-----TGTTGTATTGTCCTATCTCAGTACA-TATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATG-A-ATACGGATGGA-AGAATAATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGAA-------------GTGTAGATTTCTGTTTATGACTACATATACGTTAG--AAAT-TTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTTT--TCTCGCCAA-TGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCA-CCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATT--AAA--ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|11 : AAAAGCAATGCCAACAGATAGTTGTGTAAC-T-T-GTAA--CAA----GACTGAGTAGAGAACTGAACATTGTAATA-CTTACCA------------TCTGTGCTGCAACCTTATCTGTTTTGACTGC-CAACCA---AACACA-ACCAAGCGCAAAAC
gi|12 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgTATCAACCAT----AA--ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|13 : gGCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTA
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTGTTTATAtctgtattatttgactgtgttgctgtttata
gi|14 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGAC
gi|2 : ACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAGTTCGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACA-ACAAAGTGCTGGGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGCATAGCTCAGCAAATTTC-AAATACCATTTTAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-----TCCT--GCAT-TTCATTG--GT-TATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGAAGATAGGAAAATAGCCATATAGTTATA---AGAAACTATGGATA-----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACAT-------ACAGGT------TGTTTA---TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATGCATA--CGGATGAA-AGAATAACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGAC-TGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGG-AAAT-TTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTTT--TCTCGTCAA-TGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATA
gi|3 : AAAATCGATGACAAGGGTCAGCTGTTTAACGT-C--TGATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCACATCTGTTTT-ACTGCAAAACCAAACAACACA-ACCAAGCGCAGAGCTGTCTGTAATCAACGCCTAAAATTAGAT-G--T--T-TTAATTT---TTATACTTATACAAATATAGTAGTTTTCAATCAATTTT-AAAT-CCGTTTCAGACTGGGAACCC--GTTTGATAAAATGTGTTATCA-----TCATTAGCATATACGCTG--TA-CACTTA---GTCAATTTAC-AGGTGCAAAAGCAACCACTAT----------G-AAAGCAGCCTTGTACTTTTACGTATAAAGAATAATTAT-T-
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAA-CCTTATCT------GTTTTA----CTGCAAAC---CAAA-CAACACAA-----AAAGCG-----CAGAGCTGTCT-------------GA----------------AATCAACTCCTGAAATG-A-A--ATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTAT-TA-ATA---------TAA--AC-CATTCGTA----CATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTGT--------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTGTTTT----------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATAC-AAGCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAGGAAAATATTTA--AAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA-AA-TAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGTC-TTTCCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACGTC-GATTGCACTGTCACGTGACTTTGGACCAATAAAAA-GCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGATTTTT-GACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACGT-GATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCGcaaa
gi|5 : gtAAAATCGATAACAACGGGCAGAT-TTTAACGT-CTATTA--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAGTTCTATACTGTAACCTTATCTGTTTT-ACTGC-AAACCAAACAACACA-A-AAAGCGCAGAGCTGTCTGAAATCAACTCCT-GAAATGAAA-atcaaaaagctatttgtga
gi|6 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAAAAAACAATGAAAACGGGCAGCTATGTAATGT---GTG-------CGAGACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAGTTATGTACTGTCACCATTTCTGTTTTAACTGC-CAACCAAACAACACAGACCA-----------GTCTTCAATCAACTCCTAAAAATAAAATGC-TTAT-TTAAGTA----TTTATTTTTACAAATATGGTACTGTTCAGCT-TTTTT-AAATACTGTATCTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCTT--G-GT-TTAAACGCTGTGTACTTATACA--AATATAC-AGGAGTAAAAGTAGTCCCTACACAATA--TA----------CATATA--TACA---TGGAAGTGTGTTTACAT-AATGGCTCCTG-TTAAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGTGTGTTGCATTCTCCCATTTCAGTACAA-----------GCAGT---GACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAG-CGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTTAATTTTCCAATTTGTAACAATTTGTTTTGTG---A--CA---AAA-ATAATAACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAAGATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|8 : CAATAGCAACGGACAACTGTGTAACGTGT-ATGA--CAA-TAAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAACTATGTACTGCAACAATATCTGTTTT-ACAGC-CAACCAA-----ACA-ACCAATCGCAAAACTGTCTGCAATCAACTTCTGAAAATAA-------TGT-TTAAACAAGTTTTTAATTCTGCAAATATGGTCTTGTTCACCCACTTGT-AAATACCTTTTCAAGCTTGAGATCCAGGTATGATAAAAC-TG--TACA-----TC---------TTCGTTG--GT-
gi|9 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagaaaactggcaAAAAATCGATGACAACAGGCAGCTGTTTAACGT-CTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGGTCCTGTACTGTAACCATATCTGTTTT-ACTGC-AAACCAAACAACACA-ACCAAGTGCAGAGCTGTCTGAAATCAACTTCT-GAAATGAAA-----TATCTTAACTT---TTATATTTTTACAAATAAAGTACGTTTTAATCAATTTT-AAAT-CCGTTTaggtacgctgtacactttacataata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1111 1 3333 111 11 222222222222222222222 222222 11 111 2222 1 1 1 55555555 333333 4444444 11 1 3333333 1111 111111 1 1 1 999999999999999999999999999999 22222222222 1 1 1 1111 1 1 2 11 222 1 11111 1 44444444 11 11 111 11 1 7777777777777 222 1 111 1 44444444 11 11 1 1 11 44444444 222 666666666666666 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 2222 33
lowQualScore : 1 1 3 0 9999 66 0 88 5 5555 0 0 66 0 5 2 0 7 3333 6 1 111 1 1 5 6 7 0 1 3 11 1 555555555555555555555 1 1 666666 44 0 3 3 3 6 2 8 11 99 777 1 11 22 3333 2 3 3 22222222 888888 0000000 44 999 6 0 0 3333333 7777 0 3 555555 3 0 0 2 0 3 0 666666666666666666666666666666 0 22 88888888888 0 1 0 0 1 1 3 2 33 44 8 1 3 1 6 1 7777 5 0 0 0 6 7 7 9999 6 7 0 2 6 0 7 7 6 0 1 333 6 7 7 88 333 3 6 66666 3 1 88888888 88 6 88 777 88 3 0 7 0 1 7 7 7 7 3333333333333 7 6 333 6 0 3 7 777 7 1 6 1 3 3 0 88888888 1 88 44 6 0 2 3 0 6 1 1 6 88 7 88888888 333 0 7 111111111111111 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 1 88 7 8888 0 7 7 6 44 3
lowQualScore : . . . . .... .. . .. . .... . . .. . . . . . .... . . ... . . . . . . . . .. . ..................... . . ...... .. . . . . . . . .. .. ... . .. .. .... . . . ........ ...... ....... .. ... . . . ....... .... . . ...... . . . . . . . .............................. . .. ........... . . . . . . . . .. .. . . . . . . .... . . . . . . . .... . . . . . . . . . . . ... . . . .. ... . . ..... . . ........ .. . .. ... .. . . . . . . . . . ............. . . ... . . . . ... . . . . . . . ........ . .. .. . . . . . . . . . .. . ........ ... . . ............... . ................................................................................................................. . . . .. . .... . . . . .. .
lowQualScore : 0 1 2 2 5555 99 1 22 0 6666 8 0 00 1 0 7 7 1 2222 7 0 777 0 0 2 7 3 8 4 8 00 0 000000000000000000000 0 0 000000 22 2 2 2 2 8 5 8 55 55 555 0 22 22 5555 0 3 3 33333333 333333 3333333 77 333 7 7 0 0000000 2222 8 2 888888 2 0 0 5 2 0 0 222222222222222222222222222222 2 22 22222222222 0 0 0 0 0 0 2 5 88 66 0 0 2 0 0 4 0000 6 8 2 7 7 3 3 0000 7 3 7 0 7 7 3 3 7 0 0 888 7 3 3 33 333 3 7 00000 3 0 33333333 33 7 33 777 33 3 7 3 7 0 3 3 3 3 3333333333333 3 7 333 7 7 3 3 777 3 0 7 0 7 3 7 33333333 0 33 00 7 7 0 3 7 7 0 0 7 33 3 33333333 333 7 3 777777777777777 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 33 3 3333 7 3 3 7 00 7
consensus : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
Reference ( family-1654 ) : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TT---CGNTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACAAAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
gi|1 : AAAAATAATGATAACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAGTTTGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACG-ACAAAGCGCAGTGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGTATAGCTCAGC-AATTTTCAAATACCATTTTAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTA-----ACCT--GCAT-TT---CAATGGTTATTTA---A--AATATAC-TGGGGTAAAGGTAACCATCATACAAAAGATAGGAAAATAGCCATATAGCTATA---ATAAAAGATAAATAC-TTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG-------CAGGT------TGTTTAT--T---TGTTGTATTGTCCTATCTCAGTACA-TATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATG-A-ATACGGATGGA-AGAATAATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGAA-------------GTGTAGATTTCTGTTTATGACTACATATACGTTAG-AAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTTT--TCTCGCCAA-TGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCA-CCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATTAAA----ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|11 : AAAAGCAATGCCAACAGATAGTTGTGTAAC-T-T-GTAA--CAA----GACTGAGTAGAGAACTGAACATTGTAATA-CTTACCA------------TCTGTGCTGCAACCTTATCTGTTTTGACTGC-CAACCA---AACACA-ACCAAGCGCAAAAC
gi|12 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgTATCAACCAT--AA----ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|13 : gGCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTA
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTGTTTATAtctgtattatttgactgtgttgctgtttata
gi|14 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGAC
gi|2 : ACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAGTTCGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACA-ACAAAGTGCTGGGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGCATAGCTCAGCAAATTTC-AAATACCATTTTAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-----TCCT--GCAT-TT---CATTGGTTATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGAAGATAGGAAAATAGCCATATAGTTATA---AGAAACTATGGATA-----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACAT-------ACAGGT------TGTTTA---TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATGCATA--CGGATGAA-AGAATAACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGAC-TGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTTT--TCTCGTCAA-TGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATA
gi|3 : AAAATCGATGACAAGGGTCAGCTGTTTAACGT-C--TGATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCACATCTGTTTT-ACTGCAAAACCAAACAACACA-ACCAAGCGCAGAGCTGTCTGTAATCAACGCCTAAAATTAGAT-G--T--T-TTAATTT---TTATACTTATACAAATATAGTAGTTTTCAATCAATTTT-AAAT-CCGTTTCAGACTGGGAACCC--GTTTGATAAAATGTGTTATCA-----TCATTAGCATATA---CGCTGTACACTTA---GTCAATTTAC-AGGTGCAAAAGCAACCACTAT-----------GAAAGCAGCCTTGTACTTTTACGTATAAAGAATAATTAT-T-
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAA-CCTTATCT------GTTTTA----CTGCAAAC---CAAA-CAACACAA-----AAAGCG-----CAGAGCTGTCT-------------GA----------------AATCAACTCCTGAAATG-A-A--ATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTAT-TA-ATA---------TAA--AC-CATTCGTA----CATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTGT--------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTGTTTT----------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATAC-AAGCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAGGAAAATATTT---AAAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA-AA-TAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGTC-TTTCCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACGTC-GATTGCACTGTCACGTGACTTTGGACCAATAAAAA-GCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGATTTTT-GACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACGT-GATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCGcaaa
gi|5 : gtAAAATCGATAACAACGGGCAGAT-TTTAACGT-CTATTA--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAGTTCTATACTGTAACCTTATCTGTTTT-ACTGC-AAACCAAACAACACA-A-AAAGCGCAGAGCTGTCTGAAATCAACTCCT-GAAATGAAA-atcaaaaagctatttgtga
gi|6 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAAAAAACAATGAAAACGGGCAGCTATGTAATGT---GTG-------CGAGACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAGTTATGTACTGTCACCATTTCTGTTTTAACTGC-CAACCAAACAACACAGACCA-----------GTCTTCAATCAACTCCTAAAAATAAAATGC-TTAT-TTAAGTA----TTTATTTTTACAAATATGGTACTGTTCAGCT-TTTTT-AAATACTGTATCTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCTT--G-GT-TTAAACGCTGTGTACTTATACA--AATATAC-AGGAGTAAAAGTAGTC-CC-TACACAATATA----------CATATA--TACA---TGGAAGTGTGTTTACAT-AATGGCTCCTG-TTAAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGTGTGTTGCATTCTCCCATTTCAGTACAA-----------GCAGT---GACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAG-CGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTTAATTTTCCAATTTGTAACAATTTGTTTTGTG---A--CA---AAA-ATAATAACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAAGATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|8 : CAATAGCAACGGACAACTGTGTAACGTGT-ATGA--C-AATAAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAACTATGTACTGCAACAATATCTGTTTT-ACAGC-CAACCAA-----ACA-ACCAATCGCAAAACTGTCTGCAATCAACTTCTGAAAATAA-------TGT-TTAAACAAGTTTTTAATTCTGCAAATATGGTCTTGTTCACCCACTTGT-AAATACCTTTTCAAGCTTGAGATCCAGGTATGATAAAAC-TG--TACA-----TC---------TT---CGTTGGT
gi|9 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagaaaactggcaAAAAATCGATGACAACAGGCAGCTGTTTAACGT-CTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGGTCCTGTACTGTAACCATATCTGTTTT-ACTGC-AAACCAAACAACACA-ACCAAGTGCAGAGCTGTCTGAAATCAACTTCT-GAAATGAAA-----TATCTTAACTT---TTATATTTTTACAAATAAAGTACGTTTTAATCAATTTT-AAAT-CCGTTTaggtacgctgtacactttacataata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1111 1 3333 111 11 222222222222222222222 222222 11 111 2222 1 1 1 55555555 333333 4444444 11 1 3333333 1111 111111 1 1 1 999999999999999999999999999999 22222222222 1 1 1 1111 1 1 2 11 222 1 11111 1 44444444 11 11 111 11 1 7777777777777 222 1 111 1 44444444 11 11 1 1 11 44444444 222 666666666666666 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 2222 33
lowQualScore : 1 1 3 0 9999 66 0 88 5 5555 0 0 66 0 5 2 0 7 3333 6 1 111 1 1 5 6 7 0 1 3 11 1 555555555555555555555 1 1 666666 44 0 3 3 3 4 2 8 11 99 777 1 11 22 3333 2 3 3 22222222 888888 0000000 44 999 6 0 0 3333333 7777 0 3 555555 3 0 0 2 0 3 0 666666666666666666666666666666 0 22 88888888888 0 1 0 0 1 1 3 2 33 44 8 1 3 1 6 1 7777 5 0 0 0 6 7 7 9999 6 7 0 2 6 0 7 7 6 0 1 333 6 7 7 88 333 3 6 66666 3 1 88888888 88 6 88 777 88 3 0 7 0 1 7 7 7 7 3333333333333 7 6 333 6 0 3 7 777 7 1 6 1 3 3 0 88888888 1 88 44 6 0 2 3 0 6 1 1 6 88 7 88888888 333 0 7 111111111111111 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 1 88 7 8888 0 7 7 6 44 3
lowQualScore : . . . . .... .. . .. . .... . . .. . . . . . .... . . ... . . . . . . . . .. . ..................... . . ...... .. . . . . . . . .. .. ... . .. .. .... . . . ........ ...... ....... .. ... . . . ....... .... . . ...... . . . . . . . .............................. . .. ........... . . . . . . . . .. .. . . . . . . .... . . . . . . . .... . . . . . . . . . . . ... . . . .. ... . . ..... . . ........ .. . .. ... .. . . . . . . . . . ............. . . ... . . . . ... . . . . . . . ........ . .. .. . . . . . . . . . .. . ........ ... . . ............... . ................................................................................................................. . . . .. . .... . . . . .. .
lowQualScore : 0 1 2 2 5555 99 1 22 0 6666 8 0 00 1 0 7 7 1 2222 7 0 777 0 0 2 7 3 8 4 8 00 0 000000000000000000000 4 0 000000 22 2 2 2 2 5 5 8 55 55 555 0 22 22 5555 0 3 3 33333333 333333 3333333 77 333 7 7 0 0000000 2222 8 2 888888 2 0 0 5 2 0 0 222222222222222222222222222222 2 22 22222222222 0 0 0 0 0 0 2 5 88 66 0 0 2 0 0 4 0000 6 8 2 7 7 3 3 0000 7 3 7 0 7 7 3 3 7 0 0 888 7 3 3 33 333 3 7 00000 3 0 33333333 33 7 33 777 33 3 7 3 7 0 3 3 3 3 3333333333333 3 7 333 7 7 3 3 777 3 0 7 0 7 3 7 33333333 0 33 00 7 7 0 3 7 7 0 0 7 33 3 33333333 333 7 3 777777777777777 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 33 3 3333 7 3 3 7 00 7
consensus : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
Reference ( family-1654 ) : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
gi|1 : AAAAATAATGATAACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAGTTTGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACG-ACAAAGCGCAGTGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGTATAGCTCAGC-AATTTTCAAATACCATTTTAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTA-----ACCT--GCAT-TT---CAATGGTTATTTA---A--AATATAC-TGGGGTAAAGGTAACCATCATACAAAAGATAGGAAAATAGCCATATAGCTATA---ATAAAAGATAAATAC-TTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG-------CAGGT------TGTTTAT--T---TGTTGTATTGTCCTATCTCAGTACA-TATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATG-A-ATACGGATGGA-AGAATAATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGAA-------------GTGTAGATTTCTGTTTATGACTACATATACGTTAG-AAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTTT--TCTCGCCAA-TGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCA-CCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATTAAA----ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|11 : AAAAGCAATGCCAACAGATAGTTGTGTAAC-T-T-GTAA--CAA----GACTGAGTAGAGAACTGAACATTGTAATA-CTTACCA------------TCTGTGCTGCAACCTTATCTGTTTTGACTGC-CAACCA---AACACA-ACCAAGCGCAAAAC
gi|12 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgTATCAACCAT--AA----ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|13 : gGCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTA
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTGTTTATAtctgtattatttgactgtgttgctgtttata
gi|14 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGAC
gi|2 : ACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAGTTCGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACA-ACAAAGTGCTGGGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGCATAGCTCAGCAAATTTC-AAATACCATTTTAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-----TCCT--GCAT-TT---CATTGGTTATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGAAGATAGGAAAATAGCCATATAGTTATA---AGAAACTATGGATA-----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACAT-------ACAGGT------TGTTTA---TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATGCATA--CGGATGAA-AGAATAACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGAC-TGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTTT--TCTCGTCAA-TGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATA
gi|3 : AAAATCGATGACAAGGGTCAGCTGTTTAACGT-C--TGATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCACATCTGTTTT-ACTGCAAAACCAAACAACACA-ACCAAGCGCAGAGCTGTCTGTAATCAACGCCTAAAATTAGAT-G--T--T-TTAATTT---TTATACTTATACAAATATAGTAGTTTTCAATCAATTTT-AAAT-CCGTTTCAGACTGGGAACCC--GTTTGATAAAATGTGTTATCA-----TCATTAGCATATA---CGCTGTACACTTA---GTCAATTTAC-AGGTGCAAAAGCAACCACTAT-----------GAAAGCAGCCTTGTACTTTTACGTATAAAGAATAATTAT-T-
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAA-CCTTATCT------GTTTTA----CTGCAAAC---CAAA-CAACACAA-----AAAGCG-----CAGAGCTGTCT-------------GA----------------AATCAACTCCTGAAATG-A-A--ATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTAT-TA-ATA---------TAA--AC-CATTCGTA----CATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTGT--------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTGTTTT----------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATAC-AAGCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAGGAAAATATTT---AAAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA-AA-TAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGTC-TTTCCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACGTC-GATTGCACTGTCACGTGACTTTGGACCAATAAAAA-GCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGATTTTT-GACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACGT-GATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCGcaaa
gi|5 : gtAAAATCGATAACAACGGGCAGAT-TTTAACGT-CTATTA--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAGTTCTATACTGTAACCTTATCTGTTTT-ACTGC-AAACCAAACAACACA-A-AAAGCGCAGAGCTGTCTGAAATCAACTCCT-GAAATGAAA-atcaaaaagctatttgtga
gi|6 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAAAAAACAATGAAAACGGGCAGCTATGTAATGT---GTG-------CGAGACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAGTTATGTACTGTCACCATTTCTGTTTTAACTGC-CAACCAAACAACACAGACCA-----------GTCTTCAATCAACTCCTAAAAATAAAATGC-TTAT-TTAAGTA----TTTATTTTTACAAATATGGTACTGTTCAGCT-TTTTT-AAATACTGTATCTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCTT--G-GT-TTAAACGCTGTGTACTTATACA--AATATAC-AGGAGTAAAAGTAGTC-CC-TACACAATATA----------CATATA--TACA---TGGAAGTGTGTTTACAT-AATGGCTCCTG-TTAAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGTGTGTTGCATTCTCCCATTTCAGTACAA-----------GCAGT---GACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAG-CGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTTAATTTTCCAATTTGTAACAATTTGTTTTGTG---A--CA---AAA-ATAATAACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAAGATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|8 : CAATAGCAACGGACAACTGTGTAACGTGT-ATGA--C-AATAAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAACTATGTACTGCAACAATATCTGTTTT-ACAGC-CAACCAA-----ACA-ACCAATCGCAAAACTGTCTGCAATCAACTTCTGAAAATAA-------TGT-TTAAACAAGTTTTTAATTCTGCAAATATGGTCTTGTTCACCCACTTGT-AAATACCTTTTCAAGCTTGAGATCCAGGTATGATAAAAC-TG--TACA-----TC---------TT---CGTTGGT
gi|9 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagaaaactggcaAAAAATCGATGACAACAGGCAGCTGTTTAACGT-CTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGGTCCTGTACTGTAACCATATCTGTTTT-ACTGC-AAACCAAACAACACA-ACCAAGTGCAGAGCTGTCTGAAATCAACTTCT-GAAATGAAA-----TATCTTAACTT---TTATATTTTTACAAATAAAGTACGTTTTAATCAATTTT-AAAT-CCGTTTaggtacgctgtacactttacataata
blockSeqs : G A T ACA TG AT A AAAC G AA G C A GGT C A AGT A A A . A A A TT G CATTGTCTTGGTTTAAA T T TACA TG A A A G G G AT GT CGT G CT GA CAT T A A GAAAAGTA GCGGAG CGGTGTG AT TCC C G CAAGCTA CTAG A CAACA T A G G A G CTCCCCGACGGCTGGTTAATTTTCCAATTT CA CATACGGAT C G C T A T T G GT CA T T T A A T TAAA A C T T AAAA C A C G T T C A T TTA A A T CC CCA T G CCTCT T C TAAAGTGA TC G TT GTA AA C T T T T T T ACGAGAATCAGCA A G ATA C . A TAC T T C C A A GGGAAGAC G AT AC C T T G G T C TT T AATCAGGT TAA T TGCCTTGCAATGAAT C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G C CC T AAAC T T C GT T
blockSeqs : T A T CTA . AT . AAAC A C . T A TGC . T . C T C . A G G . T TCATTAGCATATA C A GTC A A A A C T . GC CT . T GA AT TT . . . A . TGT A . . . T AG A TAAG T . . G C . AATTA AA AAATGAC . T . . C A T T AA GA . A C C T C . A . . . . . . . . . . . . A TTT . . . . . . . . . A . . . . T . . . C . . . . . . G . . . . A . A . T C . . C . T . . . . C G . . . . . . GC . . . . . . . G
blockSeqs : T T T GTA . AT . GAAG . T . T A G . G . T T T . A A A . T TCCTGCATTT C G A A . . . . . . . . . G GT TT . . A . . CTT . . . . . . GA TG ACA . T . . C G . . . AT . T C T T A . C . T .
blockSeqs : A G T CTG . AT . GAAG . A . T G . . A . A T C . . G . . A TCTT T T CT . G . A . T . .
blockSeqs : T G T TG . A . AAAC . C . T . . . C . T G C . .
blockSeqs : A T C . C . . . C . . .
blockSeqs : G . G . . . . . A .
blockSeqCons : AT AAAC TCTGGTTT*************
originalCons : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TCCT--GCAT-TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
finalCons : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTATCTGGTTT-------------CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1111 1 3333 111 11 6666666666666666666666 222222 11 111 2222 1 1 1 55555555 333333 4444444 11 1 3333333 1111 111111 1 1 1 999999999999999999999999999999 22222222222 1 1 1 1111 1 1 2 11 222 1 11111 1 44444444 11 11 111 11 1 7777777777777 222 1 111 1 44444444 11 11 1 1 11 44444444 222 666666666666666 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 2222 33
lowQualScore : 1 1 3 0 9999 66 0 88 5 5555 0 0 66 0 5 2 0 7 3333 6 1 111 1 1 5 6 7 0 1 3 11 1 9999999999999999999999 1 1 666666 44 0 3 3 3 4 2 8 11 99 777 1 11 22 3333 2 3 3 22222222 888888 0000000 44 999 6 0 0 3333333 7777 0 3 555555 3 0 0 2 0 3 0 666666666666666666666666666666 0 22 88888888888 0 1 0 0 1 1 3 2 33 44 8 1 3 1 6 1 7777 5 0 0 0 6 7 7 9999 6 7 0 2 6 0 7 7 6 0 1 333 6 7 7 88 333 3 6 66666 3 1 88888888 88 6 88 777 88 3 0 7 0 1 7 7 7 7 3333333333333 7 6 333 6 0 3 7 777 7 1 6 1 3 3 0 88888888 1 88 44 6 0 2 3 0 6 1 1 6 88 7 88888888 333 0 7 111111111111111 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 1 88 7 8888 0 7 7 6 44 3
lowQualScore : . . . . .... .. . .. . .... . . .. . . . . . .... . . ... . . . . . . . . .. . ...................... . . ...... .. . . . . . . . .. .. ... . .. .. .... . . . ........ ...... ....... .. ... . . . ....... .... . . ...... . . . . . . . .............................. . .. ........... . . . . . . . . .. .. . . . . . . .... . . . . . . . .... . . . . . . . . . . . ... . . . .. ... . . ..... . . ........ .. . .. ... .. . . . . . . . . . ............. . . ... . . . . ... . . . . . . . ........ . .. .. . . . . . . . . . .. . ........ ... . . ............... . ................................................................................................................. . . . .. . .... . . . . .. .
lowQualScore : 0 1 2 2 5555 99 1 22 0 6666 8 0 00 1 0 7 7 1 2222 7 0 777 0 0 2 7 3 8 4 8 00 0 4444444444444444444444 4 0 000000 22 2 2 2 2 5 5 8 55 55 555 0 22 22 5555 0 3 3 33333333 333333 3333333 77 333 7 7 0 0000000 2222 8 2 888888 2 0 0 5 2 0 0 222222222222222222222222222222 2 22 22222222222 0 0 0 0 0 0 2 5 88 66 0 0 2 0 0 4 0000 6 8 2 7 7 3 3 0000 7 3 7 0 7 7 3 3 7 0 0 888 7 3 3 33 333 3 7 00000 3 0 33333333 33 7 33 777 33 3 7 3 7 0 3 3 3 3 3333333333333 3 7 333 7 7 3 3 777 3 0 7 0 7 3 7 33333333 0 33 00 7 7 0 3 7 7 0 0 7 33 3 33333333 333 7 3 777777777777777 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 33 3 3333 7 3 3 7 00 7
consensus : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TC--TGCGT---TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
Reference ( family-1654 ) : AAAAANCGATGACAACGGGCAGCTGTGTAACGT-C-GTGA--CAAATAAGACTGAGTAGAGAACAGGACATTGTAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCATATCTGTTTT-ACTGC-NAACCAAACAACACA-ACCAAGCGCAGAGCCGTCTGCAATCAACTCCTAAAAATAAAA-G--TTAT-TTAANTA---TTTTANTTTTACAAATATAGTATNGTTCAGCCAATTTT-AAATACCGTTTCAGACTGGGGATCCAGGTTTGACAAAATATG--ANTA-----TC--TG-GT---TT---CGCTGGTTACTTA---A--AATATAC-GGGGGTAAAGGTAACCACCATACANAAGATAGGAAAATAGCCATATAGTTATA---ANAAAGNATGANTAC-T-AATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG------ACAGGT------TGTTTAC--TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTAAATCAATTTAATATTTTGTCACTCGAAA-TCTTTTCC------GTTTTG--AGCTGTAAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------GATTA------------GAACCAATTTGTGTCGTG-A-A--CGGACGAA-ANAATAACATAAAAA-ATC-TGACTTGCGTGTANATTNTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTNGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATACCCGTAGATGGCGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCGTACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGNTGCTGTTTTTAG-CAGCTTCTTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTCCCCCCAAGGTTAA-CTAANT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCGATGCCTTTTGAATGTGTTCACGANTATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAA-AAACAGACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAANAACACAATACGTCCTTNCCGCTT-GAAGTCACAGCGCGAAATG--------AGCGGGNTATTTT--TCTCGTCAA-CGTCCGGGTGTACTGTCACGTGACCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTCGGTTGGTCGAANGNTTTCGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTAAAAATA--------GCCAAGCTA---CAATGCAACGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTNAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAANATGAGATATATGATATCAA--ATTAAA----ACGCACCATACTTTAAACATTACAAAAGAAAATAATCTTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAATA-TTCCGCCTATTTCTATAAC
gi|1 : AAAAATAATGATAACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTAGAGAACAGGATATTGTTACA-CTCACCATCT----GAAGTTTGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACG-ACAAAGCGCAGTGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGTATAGCTCAGC-AATTTTCAAATACCATTTTAGAGTGGGGATCCAGCTTTCACAAAATATG--AGTAA----CC--TGCAT---TT---CAATGGTTATTTA---A--AATATAC-TGGGGTAAAGGTAACCATCATACAAAAGATAGGAAAATAGCCATATAGCTATA---ATAAAAGATAAATAC-TTAATGGATATTGCTTAAAC-CAGAAAC-TTGTAAGTACACATG-------CAGGT------TGTTTAT--T---TGTTGTATTGTCCTATCTCAGTACA-TATAGATATATACAATTCTGGTAAATCAATTTAATATTTTGTCACTTGAAA-TCTTTTTT------GTTTTG--AACTGTCAACAACCAAA-TAAT-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATG-A-ATACGGATGGA-AGAATAATATAAAAA-ATC-CGACTTGCATGTAAATTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTGGACAATCACACAAAACCTGCCCCGCAGAC----GACATAACCAAGGATATGCCCGTAGATGGTGACCTGTAAATGATTTGTATTTATATAAAAGAGAACTAACAACACATTCATATTGACATTGAGAGAGTTGATTTCTCCACTGAGTTTTACTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGCTGTTTTTAGTCAGCTTCCTATTTCATTAAATGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGATAAAAACGGATTTTCCCCCAAGGTTAA-CTAATT--------ATAT--AATTGCAGGTTGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCAATGCCTTTTGAATGTGTTCATGAATATTAATAATGCATGTATGCGATTGTGTTGAAACAATGGCCGCCGCAACAGACTATGTTCGAA-------------GTGTAGATTTCTGTTTATGACTACATATACGTTAG-AAA---TTTCACAAAACATTATTAAACGAAATGAAAGCGATACAAATTGCAATAAAATATCACAAAGAAACAAACAA-A-AACACATTTTAACTCACGCTACCATCCCAAATCCAACAACACAATACGTCCTTACTGCTT-GAAGTAATAGTGCGAAATG--------AGCGGGATATTTT--TCTCGCCAA-TGTTCGGGTGTACTGTCATGTGTCCTTTAACCAATCAAGACGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGAAAGATTTCGCGCAAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGCCTAAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAAAGGATTAAGAATGGAGCATTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTATAACTCAGTCCACACAGTCCACTGCA-CCCC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCGCCGTACCCTCCGAGGTCGCCTATCTAACACGTGTTGATTGTTGTTACACATGTCTTTTTCAGAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAAAATGAGATATATGATATCAA--ATTAAA----ACACACCATGCTTTAAACATTACAATAGAAAATAATATTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATAAAGAATGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGATCACAGTGAAATATTTCCACCTATTTCTATAAC
gi|11 : AAAAGCAATGCCAACAGATAGTTGTGTAAC-T-T-GTAA--CAA----GACTGAGTAGAGAACTGAACATTGTAATA-CTTACCA------------TCTGTGCTGCAACCTTATCTGTTTTGACTGC-CAACCA---AACACA-ACCAAGCGCAAAAC
gi|12 : attcgcattagactaaaatattcattgttcatactttttagtaaagcacacctatctgacaatcatattatgTATCAACCAT--AA----ACGCACTAAAATGTAAACATTACATAAGAAAATAATCTTT------GTACGGGTTCAAGCTAGGGGCATTATACAGGATATGAAAGGGTCTCTTATTTTC--TTCTTTTT-----TTTTTGTTCTGGTTTCCATTATTTGCAGCAGTTCACCATGAAATA---CCTCCTGTTTTTATAA
gi|13 : gGCTGCAATTCCCAGT-GTCTATGTTGATAATCACACACAACCAGCCTCACAGAC----GACACAACCAAGGATATATTTGTA
gi|13 : TATATTTGTATCTGTATTATTTGACTGTGTTGCTGTTTATAtctgtattatttgactgtgttgctgtttata
gi|14 : gctgcaattcccagtgtctatgttgataatcacacacaaccagcctcacagacgacacaaccaaggaCAGAATAAAGAAGGGTATCTTATTTTCTGTTGTTTTTCTTTCTTTTTGTTTCTCTCTCCGTTATTTTCCTCAGTTCACAGTGAAACAGTTCCGCCTATTTCTATGAC
gi|2 : ACGGACAGCTG-GTAATAAAC-ATGA--CAAA-ACGACTGAGTACAGAACAGGATATTGTAACAACTCACCATCT----GAAGTTCGGTACTGTAACCATTTCTGTTTT-ACTGC-TAACCAAACAATACA-ACAAAGTGCTGGGCCATTTCCTTGCAACTTCTAAAAATAAAA-GGTTTAT-TTAAATA---TTTTAATTTGACAAATATAGCATAGCTCAGCAAATTTC-AAATACCATTTTAGAGTGGGGATCTAGATTTCACAAAATATG--AGTA-----TCC-TGCAT---TT---CATTGGTTATTTA---A--AATATATTGGGGGTAAAGGTAACCATCATACAGAAGATAGGAAAATAGCCATATAGTTATA---AGAAACTATGGATA-----ATGGATATTGTTTAAAC-CAGAAAC-TTGTAAGTACACAT-------ACAGGT------TGTTTA---TGT-TGTTGCATTGTCCCATCTCAGTACAATATAGATATATACAATTCCGGTACATCAATTTAATATTTTGTCACTCGAAA-TCTTTTTCAAGCTAGTTTTG--AGCTGTAACCAACCAAA-TAAG-CAATCT-TAGA-CGGTCGACATA-CTTTCC-------------AATTA------------GAACCAATTTGTGTCATGCATA--CGGATGAA-AGAATAACATAAAAA-ATC-TGACTTACATGTAATTTTTTAAGTTTCCGCTGGTGCTGCAACTTCGAGC-GTCTGCTTAGACAATCACACAAACCCTGCACCGCAGAC----GACATAACCAAGGATATACCCGTAGATAGTGAC-TGTAAATGATTTGCTTTTATATAAAAAAGAACTAACAATACATTCATACTGACATTGAGAGAGTCGATTTCTCCACTGAGTTTTGCTTTTCTGGTTTAT-TTTTTATCTGTACTATTCGACTGTGATGTTGTTTTTAGACAGCTTCTTATTTCATTAATTGATATTCAATAGATTGGGGCTTAT--GTGCCCGCCATGGCTATCGAGATTGCCAGTTTAAAAA---AGTTT-CAATCAGTTAAAAACGGATTTCCTCTCAAGGTTAA-CTAACTTAAAGTGAATAT--AATTGCAGGTAGCAA--GCTA-T-GTAATTTAGC--TAGTA-AATCATTGCTTTTTGAATGTGTTCATGATAATTAATAATGCATGTATGCGATTGTATTGAAACAATGGCCGCCGCAACAGACTAAGTTCGAA-------------GTGTAGATTTCCGTTTATGACTACATATACGTAAGGAAA---TTTCACAAAACATTATTAAATGAAATGAAAGCGATACAAATTGCAATGAAATATCACAAA-AAACAGACAA-A-AACACATTT--ACTCACGCTACCATCCCAAATCCAATAACACAATACGTCCTTCCAGCTT-GAAGTCACAGTGCGAAATG--------AGCGGGGTATTTT--TCTCGTCAA-TGTCCGGGTATACTGTCATGTGACCTTTAACCAATCATGATGC-ATCCGGAAAATAACGAAGGCTCTTGGTTGGTCGTAGATTTTTGCGCGAAAAGTATCACGTGATGCAAGTAGCTCTTTGGCGAGTGAGT--GAATTGATTTTTTGACACGTCTTAAAATA--------GCCAAGCTA---CAATGCAATGTTGATTACTTAATGG------GC-------CGTTTAGAGGATTAAGAATGGAGCGTTTACATATCGATCGTTTATTAGAAGAGGCCATTTTATGTTATTTTAATAAACCACCTTGTACATATTGTAACTCAGTCCACACAGTCCACCGCACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAATCACCGTACCCTCCGAGGTCGCCTATCTAATATGTGTTGATTGTTATTACACATGT-TTTTTGAAAGACATACAGTGTTGTTTTTTCAGTCAACCCATGAACATAAGATATATGATACCAA--ATTAAAAAACACACACCATACTTTAAACATTACAAAAGAAAATAATCGTTTACCAGGTGCGGATTCAGGCTAGGGACATTGTACAGGATA
gi|3 : AAAATCGATGACAAGGGTCAGCTGTTTAACGT-C--TGATGCAAATAAGACTGAGTAGATAACAAGACATTATAATA-CTCACCATCTAAACGAAGTTCTGTACTGTAACCACATCTGTTTT-ACTGCAAAACCAAACAACACA-ACCAAGCGCAGAGCTGTCTGTAATCAACGCCTAAAATTAGAT-G--T--T-TTAATTT---TTATACTTATACAAATATAGTAGTTTTCAATCAATTTT-AAAT-CCGTTTCAGACTGGGAACCC--GTTTGATAAAATGTGTTATCA-----TCATTA-GCATATA---CGCTGTACACTTA---GTCAATTTAC-AGGTGCAAAAGCAACCACTAT-----------GAAAGCAGCCTTGTACTTTTACGTATAAAGAATAATTAT-T-
gi|4 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaattcaggataaccaacgaaaagcctaattcaagcataattacaaattgcacgagcatattgtacttaactttcatcttcttgtctgtacatcttatatgacaaccatctgcaggataccaatcagtcacattactactgggaaccaatcctgcattaccaagcgtctgggtaccaacctgttgaaattgaataataatttaatattctataacaaacttggatggacagtgctaagagtatgtaaaaataaagacaataagaaaaaggacatatcaaaatggtagagttacgcaacttgtattctgaacataatcatttcgttatggtgcagggaattctgcttttacaagagatcaccgatcggcaacaaaatagcacattacgattaggcttaacacagcgcgagaagactgttccagaggatgcagttactggagatgatgatgatgaaatgtcattcattttattttttactttccatttacatacaatgtcaatgacctatcagtctagtatattttgAA-CCTTATCT------GTTTTA----CTGCAAAC---CAAA-CAACACAA-----AAAGCG-----CAGAGCTGTCT-------------GA----------------AATCAACTCCTGAAATG-A-A--ATGACAAACATGAGAATATAAAAT-ATC-TGACATACGTGTACATTATTAAG------------CTGTAACTTCATGT-GTCTTTTATGACAACCACACAAATTCTGCCACGCAGACTAAAGCCATAACCAATGGTACACGTGCAAATGGCGACCTGCTAATGAATAGTAT-TA-ATA---------TAA--AC-CATTCGTA----CATT--------TGATT----CAA-AAGTTCGA----------TTAA-CCTTTATCTGTACTATTTCACTGTATTGCTGT--------ATCTTATTAATGCAATAAATGGT-TTTAATAAAT----GATTGTCCATGCGCGCAATGGCTATCGGAATTTCTAATTTAAAAACCAAGTTTTCAATCA-ATAAAAATTGTTTT----------TTAATCTAAAT--------ATATTCAACGGTAA--TGCAATTGCTGGTAGCAGTTCAATAATAATACAACCGATGGCTGTAAAA-GTGTACACGACTAT----AA---ATGGAAGCTA--GTGTTGAAACAATGGCCACTGCAGAATAC-AAGCCCGAAACGAGAATCAGCAGTGTGCACTTCCGTCCATG--TACATAAAGGTAAGGAAAATATTT---AAAATATTATTAAATTGAATGAAAATAATACAAATTAGAATAAAATATGATAAA-AA-TAGACAATACAACACAGTTTAACTCACGCCACCATCCTATGTCCAAAAATAAAATAGGTC-TTTCCACTTAGAACGCACAACTTGAAATGGGGAAGACAGTGGGCTGCTTTATTCTCGTCAAACGTC-GATTGCACTGTCACGTGACTTTGGACCAATAAAAA-GCTAGCCGGAAAAAGACGAGGGTTTTCTATTGGTC-AACGGTTTCCCGCGAAAAATATCACGTGATGCAAGTAGCT----------TAAGTTTGAGTTGATTTTT-GACATATCTAAACATAAATCAGGTGCTAAAATATAACAAAGTAACGT-GATTACTTAATGATGCCTTGCAATGAATCGTTTAAAGGATTAAGAATGGAGCGcaaa
gi|5 : gtAAAATCGATAACAACGGGCAGAT-TTTAACGT-CTATTA--CAAATAAGACTGAGTAGAGAACAGGACATTATAATA-CTCACTATATAAACGAAGTTCTATACTGTAACCTTATCTGTTTT-ACTGC-AAACCAAACAACACA-A-AAAGCGCAGAGCTGTCTGAAATCAACTCCT-GAAATGAAA-atcaaaaagctatttgtga
gi|6 : acataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaataaatatttaaacaaacaaatcaggataacgaacgaaaaagcataattcaagcctattacaaattacacgagcacattgtacttaactttcgtcttctggtctgtacatcgtacacgacaaccatctgcgcaataccaattagtcacattactactgggaaccaatcccgaatgaccaagcgtctgggttagggtaccaacctgttaaaattgaattatcattaagtgttctataacaaaatcggatggacagtgctaaaagtttaagcatctcaaaataacgacgatgggaaaaaaagacatcaaaaagtaagagttatgtaatctgcattctgaaaaatttctttcataagagatcaccgaccggcaacaaagtatcacattaggattaggttaaatacatcgcgagaatactcttccagagggatgcgattactagagatgatgatcattgttttactttacatttacatacaaggtcattgactatcaggctagtatattatgAAAAAACAATGAAAACGGGCAGCTATGTAATGT---GTG-------CGAGACTGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAGTTATGTACTGTCACCATTTCTGTTTTAACTGC-CAACCAAACAACACAGACCA-----------GTCTTCAATCAACTCCTAAAAATAAAATGC-TTAT-TTAAGTA----TTTATTTTTACAAATATGGTACTGTTCAGCT-TTTTT-AAATACTGTATCTGACTGGGGATCCAGATTTGACAAGTTATC--ATTACATTGTCT-TG-GT---TTAAACGCTGTGTACTTATACA--AATATAC-AGGAGTAAAAGTAGTC-CC-TACACAATATA----------CATATA--TACA---TGGAAGTGTGTTTACAT-AATGGCTCCTG-TTAAATATAGATATATTATAAATATACATGAAAAGTACAGGTGCGGAGTATTTGCGGTGTGTGTTGCATTCTCCCATTTCAGTACAA-----------GCAGT---GACGAAT-------ATATTTTAACACTTAAAAGTCGTTTCA------GGCTAGCTAGCTTTGAACAACCGAACT--T-TAATCTATAAG-CGGTTGCCATA-CGTTCCCTCCCCGACGGCTGGTTAATTTTCCAATTTGTAACAATTTGTTTTGTG---A--CA---AAA-ATAATAACATAAAAACATCTTGACTTGCGTGTACATTGTTGAGTTTCCTCTGAAGATGAACCTCCCTGCTCTCTGCTTGGG----CACACAAAACC-ACGTTACAGAC----G--ATAATCA--GATA
gi|8 : CAATAGCAACGGACAACTGTGTAACGTGT-ATGA--C-AATAAGACCGAGTAGAGAACAGGATATTGTAATA-CTCACCATCTGAAGCAAACTATGTACTGCAACAATATCTGTTTT-ACAGC-CAACCAA-----ACA-ACCAATCGCAAAACTGTCTGCAATCAACTTCTGAAAATAA-------TGT-TTAAACAAGTTTTTAATTCTGCAAATATGGTCTTGTTCACCCACTTGT-AAATACCTTTTCAAGCTTGAGATCCAGGTATGATAAAAC-TG--TACA-----TC----------TT---CGTTGGT
gi|9 : agaaaagcacacattaaaaatgtccaaagtatactagatttcattaagatttcaacgagaaaactggcaAAAAATCGATGACAACAGGCAGCTGTTTAACGT-CTGTTA--CAAATAAGACTTAGTAGAGAACCGGACATTATAATA-CTCACTATCTAAACGAGGTCCTGTACTGTAACCATATCTGTTTT-ACTGC-AAACCAAACAACACA-ACCAAGTGCAGAGCTGTCTGAAATCAACTTCT-GAAATGAAA-----TATCTTAACTT---TTATATTTTTACAAATAAAGTACGTTTTAATCAATTTT-AAAT-CCGTTTaggtacgctgtacactttacataata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GACAATAAATATTTAAACAACGAAAAGCATAATTCAAGCATATTACAAATTACACGAGCACATTGTACTTAACTTTCGTCTTCTGGTCTGTACATCTTATACGACAACCATCTGCACGATACCAATCAGTCACATTACTCCTAGCAACCAACTCCGAATTACCAAGCATCTGGGTACCAACCTGTTAAAATTGAATTATCGTTAAGTGTTCTATAACAAACTTGGATGAACAGTGCTTAGAGTTTAAGCATGTAAAAATAAGGTCAATGAGTAAAAGGACATATAAAAAACTAAGAGTTATGCAATTTGCATTCTGAACATAATCATTTCGTTATGGAACATGGAATTCTGTTTTACAAGAGATCACCGATCGGCAACAAAGTAGCATATTACGATTAGGTTAAACACATCGCGAGAATGCTCTTCCAGGGGGATGTGATTACTAGAGATAATGATGAT
Unaligned ( gi|10 ): AAATATTCAAGAATACCATATTTTACACAAGCACAGTACTTAACTTTCATCTTGTATTCTGTACATCATCCCAGACAACCATCTGCACCAACTTGTACCAACCAGTCACCATCACATTACTGCTGGGAACCAATCTCACATCACACTGCCGGGTACCAAACCTGTTTAATTTCTATACATCTTAGTAAACAAATATGGATAGTTATAAGAATTTATTCATCTACAAATGAAGGCAATGAGAAAAGCACACATTAAAAATGTCCAAAGTATACTAGATTTCATT
Unaligned ( gi|15 ): ACATCTTGTGAATACTCTTCCAGAGGAATTCGATTACTAATGTTATAGATGATGATG
Unaligned ( gi|16 ): ATCATCAGCAAGAATACACTTCAAGAGGGATGCGATTACTGGAGACGATGA
Unaligned ( gi|17 ): CGCGAGAACACTTTTCCCGAAGATGCGATTACTAGATATTATGATGATG