lowQualScore : 22222222222222222222222222222222222222222222222222222222222
lowQualScore : 1111 1 2 44444444 3333333 1 00000000000000000000000000000000000000000000000000000000000 1 33 33 4444 1 222 1 1 333333333 1 333333333 333333 1 1 3333 333333333 11 2222222 2222222222 11 111111 2 111 55555555555555555555555 1111111111 1 22222222 1111 444444 1 1 11 333333333333 111 1 11 1 1 1 1111 22222 1 11 11 1 11 22222222 11 33333333333 33333333333 111 6666666666666
lowQualScore : 3 6 6 9999 6 3 55555555 1111111 7 6 2 55555555555555555555555555555555555555555555555555555555555 7 6 66 00 66 2222 7 9 2 77 2 2 6 222 0 5 222222222 3 1 555555555 000000 3 3 6 4 2 7777 3 333333333 5 66 5 4 55 66 0000000 9 77 0000000000 0 11 111111 5 999 2 5 888 00000000000000000000000 0000000000 0 8 44444444 2 0 5 6 4 0 0 4444 444444 2 5 11 6 1 222222222222 444 2 88 6 8 0 1 5 9 5 5 6 4 0 0000 44444 1 2 55 11 8 77 7 00 0 11111111 3 66 1 66 0 3 0 22 44 1 00000000000 55 8 55 77777777777 33 6666 6666 3 7777777 1 77777 999 1111111111111
lowQualScore : . . . .... . . ........ ....... . . . ........................................................... . . .. .. .. .... . . . .. . . . ... . . ......... . . ......... ...... . . . . . .... . ......... . .. . . .. .. ....... . .. .......... . .. ...... . ... . . ... ....................... .......... . . ........ . . . . . . . .... ...... . . .. . . ............ ... . .. . . . . . . . . . . . .... ..... . . .. .. . .. . .. . ........ . .. . .. . . . .. .. . ........... .. . .. ........... .. .... .... . ....... . ..... ... .............
lowQualScore : 0 0 0 8888 8 7 77777777 2222222 0 0 0 66666666666666666666666666666666666666666666666666666666666 0 0 77 77 77 0000 0 0 0 22 5 0 0 000 5 0 222222222 7 7 444444444 333333 3 3 0 0 5 5555 7 000000000 0 99 0 4 88 66 3333333 2 99 6666666666 8 00 444444 0 111 1 7 000 22222222222222222222222 0000000000 0 0 22222222 8 4 7 7 6 8 8 2222 888888 7 2 66 0 0 888888888888 000 8 00 0 0 8 7 0 1 7 0 7 8 1 6666 33333 6 6 00 00 2 22 0 00 8 44444444 3 22 0 99 8 2 1 22 77 4 11111111111 00 6 55 66666666666 99 5555 5555 1 2222222 7 11111 222 9999999999999
consensus : NNNNNNNNNNTGGTNATGGACAGAATCAAAGGGCCATAACT---CCGTGAAAAA-TCATCGAACCGGAACACGAAGACAATATGCGCATTCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAAC-ACCGGA-GTTGTAGAGAAAT-AGCC-GG--AG--ATTTGGTNA------TGGACAGAATCAAAGGGCCATAACTCCGTGAAAAA-ATCATCGAACCGGAACACAAAGACAATATGCGCATCTNCATTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAA--CCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGG----ACGGACGGACGAA--CG--CGG-CTA-TTTNTNACAATATNCATNTAAC--A-----GCA-A--GTT-TTACAA-AATTNNAACCAGAGGTTGTAGAGAAATAGCGC-----GGACAAGAATT--TGGTCACAGACGCAATGAAAGG--GCCATAACTCCGTG-AAAAATCATCGAACCGGAACACAANGACAATATGCGCAT-CTCCAT-TTGGTAGT------GA--TGCA----T----CCAGAGGTTGTAG-G-AA--------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATT----CCAACNNGA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGT--------CACNGACAGAATCAAAGG---GCCATAACTCCGTGAAAA-ATCATCGAACCGGAA-CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATT----CCAACCNGAGGTTGTAGAGAAATAGCCCGGACAAGAATT--TGGTC--ATNGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTNCAT-TTGGTAATGATGCATCCTAG--CAAGTTTCACAAAATTCCAACCAGAGGTTGTAGAGAAAT--A----GCC-CG--GACAAGAATT--TGG----TC--ACGGAC--GCACGG----ACGGAC----GA-A---G---CGGCGAC-----TA--TATGCTTCCCC-----TC--TTT-GGGGAGCATAAA
Reference ( gi|1 ) : CAATGATGTGTGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGA-AT----GAGAAAT-G------------ATTTGGTAA------TGTATGCAATCTAAGGGCCACAACTC--TGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTA--TCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGG----ACGGACGGACAAA--CG--CGG-CTA-TCTATGACAA---GCATGTAA---A-----ACA-A--GTT-TCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGT-----GGACAATAATT--TGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGGAACACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGT------GA--TGCA----T----CCNNNNNNNNNNG-G-AA--------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATT----CCAATATGGGGTTGAAGAGTAATAGTGCAGGCAAGAATTTGGT--------CACTGACAGAATCAAAGG---GCTATAACTCAGTGGAAA-ATCATGGAACTAGAA-CACAAAGATAATATGTGCAT-CTCAAT-TTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATT----CCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATT--TGGTC--ATCGACTGAATCAAAGGGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAAT--T----ACC-TG--GACAATAATT--TGG----TC--ACAGAC--GCACGG----ACGGAC----GA-A---G---CGGCGAC-----TT--TATGCTTCCCC-----TC--GTTGGGGGAGCATAAA
gi|3 : TGGTCATAGACAGAATCAAAGGGCCATAACT---CTGTGAAAAA-TCATTGAACCGGAGCACAAAGAAAATATGTGT-TTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCA---ACCAGAGGTTTTAGAGAAAT--------------ATT
gi|32 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagtgaaacagcatcatgaagacaatatgcacatctccacttggtaatgattcatcctagcaagtttcatagaattccaacctgaggttgtagagaaatagccggacaagaattTGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAccagacaagaacttggggatgcacatacggacaaagtggcgactatatgcttcccccctttaggggagcataaaa
gi|4 : ttGACAGAATGAAAGGGCCATAACT---CCGT-GAAAAATCATCGAACCGGAACACAA
gi|2 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagcgcaatatgaagacaatatgctcatctccacttggtaatgaggcatcctagcaagcttcataaaattccaaccagacgttgtagagaaatagagcagagaagaattttAGAATCAAAGGCCCATAACT---CCGTCAAAAA-TCATCGAACCGGAACAGAAAGACAGTATACGTATT-TGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAAC--CTGAA-GTTGTAGAGAAAT-AGCCCGGACAATAATTTGGTCA------CAAATAGGATCAGAGGGCCATAACTCCATGAAAAA--TCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCA--GGTTGTAGAGAAATAGCGCGGACAAGAATTT
gi|4 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatAATATGAAGACAATATGCTCA-TCTCCACTTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATTCCA---ACCAGACGTTGTAGAGAAATAG------------AGCAGAGAAGAATTTTG-ACAGAATGAAAGGGCCATAACTCCGTGAAAA--ATCATCGAACCGGAACACggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|33 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagcgcAACACAAAGACAATTTGTACA-TCTCCATTTGGTAaa
gi|3 : CATGAAGACAATATGCACA-TCTCCACTTGGTAATGATTCATCCTAGCAAGTTTCATAGAATTCCAAC--CTGAG-GTTGTAGAGAAAT-AGCCGGACAAGA-ATTTGGTCA------TAGACAGAATCAAAGGGCCATAACTC--TGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAA--CCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGACAAAGTGG--CGA-CTA-Tg
gi|32 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagtgaaacagcatTTTGGTAA------TGGAAAGAATCAAAGGGCCATAACTatgcttcccccctttaggggagcataaaa
gi|33 : AACACAAAGACAATTTGTACATCTCCATTTGGTAaaattgtgaa
gi|4 : AAGACAATATGCTCATCTCCACTTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATTCCAA--CCAGACGTTGTAGAGAAATAGAGCAGAGAAGAATTTg
gi|15 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagcgcaatatgTAGCTAGTTTTACAAAATTAAAA--CCAAATGTTGTAGCGAAATAGCtgacagaatgaaagggccataactccgtgaaaaatcatcgaaccggaacacaa
gi|19 : ttaaactaaaatgacactacgtgcatatccGGTTAAAGAGAAATAGCCTGGACAAAAACTT--GG------GGACGCACACA--CG--C
gi|25 : gaGGTTGTAGAGAAATAGCCTGAACAAGAACTT-GGG----GCAGACGGACacagacagacgaagcagcgac
gi|24 : ccagaTTGTAGGCAAATAGCCCTGACAAGAACTTGGGG----ATGTACAGAg
gi|22 : agaaaAGAGAAATAGCCCGGACAATAATTtgga
gi|12 : gttgaGGACAAGAATTTTGTG----ACGGACGGACGAA--CATTCGGACTA-Tagtggtcgaatcgatgcacgcatggacga
gi|8 : gaaaattaatacG-CTAGTTTTTTACAA---CTATTTAAC--A-----ACA-ATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGatgctttcccatttccttttagcgaagcataaaa
gi|3 : aatcattgaaccgtaacaaaatgacaatatgcatagaccctaATGACAATATGCATATATCTTA-----GCT-A--GTT-TTACAA-AATTGAAACCAGAGGTTGTAGTGAAACAGCATCATGAAGACAATA
gi|16 : caaaATGTAA---ATATGCACAGA--GTT-TTACCA-AATTTAAACCAGAGGTTGTGGtgcacatctccacttggtaatgattcatcctagcaagtttcatagaattccaacctgaggttgtagagaaatagccggacaagaatttggtcatagacagaatcaaagggccataactctgtgaaaaatcattgaaccggagcacaaagaaaatatgtgtttctgcatttggtaatgatgcatcctagtaagtttcataaaactccaaccagaggttttagagaaatattccagacaagaacttggggatgcacatacggacaaagtggcgactatatgcttcccccctttaggggagcataaaa
gi|3 : cgcaaatcattgaaccggatcaaa---A-----GCA-A--GTT-TCATAG-AATTCCAACCTGAGGTTGTAGAGAAATAGC-C-----GGACAAGAATT--TGGTCATAGACAGAATCAAAGG--GCCATAACTCTGTG-AAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTT-CTGCAT-TTGGTAAT------GA--TGCA----T----CC
gi|4 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagtgaaacagcatcatgaagacaatatgcacatctccacttggtaatgattcatcct---A-----GCA-A--GCT-TCATAA-AATTCCAACCAGACGTTGTAGAGAAATAGAGC-----AGAGAAGAATT--TTG--ACAG----AATGAAAGG--GCCATAACTCCGTG-AAAAATCATCGAACCGGAACACAAtagtaagtttcataaaactccaaccagaggttttagagaaatattccagacaagaacttggggatgcacatacggacaaagtggcgactatatgcttcccccctttaggggagcataaaa
gi|2 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagcgcaatatgaagacaatatgctcatctccacttggtaatgaggcatcctA-A--GTT-TCATAA-AATTCCAACTTCAGGTTGTAGAGAAATAGCGC-----GGACAAGAATT--TGGTCACAAACATAATCAAAGG--GCCATAACTCCGTG-AAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAAT------GA--TGCA----T----CC
gi|15 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagt-A--GTT-TTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|18 : ttaaactaaaatgacactacgtgcatatcctagct-A--GTT-TTACAA-AATTAAAACCAGAGGTTGTAGCGAAATA
gi|9 : gaacaaaatgactatatgtggatattatagctA-AATTCCAACCAGACACTGTAGAGAAATAGTAC-----AGACTAGGATT--TGATAAAGGAAGCACTGA---C--GCCATA-------GCAGAAACTAC
gi|19 : AGGTTAAAGAGAAATAGCCT-----GGACAAAAACT--TGGatgcttccccaaattttttttcagcaagcataaa
gi|25 : gAGGTTGTAGAGAAATAGCCT-----GAACAAGAACT--TGGggacgcacacacgcacagacagacgaagcagcgac
gi|22 : ccagGTTGAAGAGAAATAGCCC-----GGACAATAATTAGTGGTC---GAATCGATGggcagacggacg
gi|17 : ATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAAAAAATATGTGCAT-CTCCAcacgcatggacga
gi|2 : AAATCATTTAACCGGAACAAAATGACAATATACGCAG-ATCC---TAGCTAGTTTTACAGAATTATA----A----CCAGAGGTTGTAG-G-GAAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATT----CCAACATTTGATTGTAGAGAAAAAGCATGGACAAGAATTTGGT--------CTCAAATAGAATCAAAGG---CCCATAACTCCGTCAAAA-ATCATCGAACCGGAA-CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAGTAAGTTTCATGAAATT----CCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATT--TGGTC--ACAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAG--TAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAAT--A----GCG-CG--GACAAGAATT--TGG----TC--ACAAAC--act
gi|4 : cAAATCATTCAACCGGAACAAAATGACAATATGCGCGT-TTCC---TAGTTAGT------TT--TACAAAATTAAAACCAGAGGTTGTAGCGCAA--------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATT----CCAACCAGACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--------------TGACAGAATGAAAGG---GCCATAACTCCGTGAAAA-ATCATCGAACCGGAA-CACAAataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|33 : AACACAAAGACAATTTGTACAT-CTCCAT-TTGGTAGctatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|17 : -G-AA--------AACAAAAAAAATATGTGCAT-CTCCA
gi|5 : atgaaaggatggcataaatcctgaaaatattatcagatca-G-AA--------CACTGTGACAATATGCGCATACTTCATGTTGGTAact
gi|33 : aaatcatctgacca-AA--------CACAAAGACAATTTGTACAT-CTCCAT-TTGGTAGctatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|3 : --------CATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAGCAAGTTTCATAGAATT----CCAACCTGAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGT--------CATAGACAGAATCAAAGG---GCCATAACTCTGTGAAAA-ATCATTGAACCGGAG-CACAAAGAAAATATGTGTTT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAACT----CCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACT--TGG
gi|6 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagtgaaacagcatAGTCAACATGCGTAT----------GGTGTTGATGTATCCTAGCAAGTTTC-T---ATT------AGCAC----TTGAGGAGCAGTAACGTGAAAAAGGATTTAGT--------ggatgcacatacggacaaagtggcgactatatgcttcccccctttaggggagcataaaa
gi|15 : ATCCTAGCTAGTTTTACAAAATTAAAACCAA-AT---GTTGTAGCGAAATAGttaggacgcacgaacgcacggacaaaacagtgagtattgcttctctgaaatcattcggga
gi|9 : ttaaactaaaatgacactacgtgcatAAATT----CCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATTTGATAAAGGAAGCACTGACc
gi|32 : TTTGGT--------AATGGAAAGAATCAAAGG---GCCATAACTgccatagcagaaactacatgcttccccaaattttttttcagcaagcataaa
gi|17 : ATGAAAGGATGGC-ATAAATCC-TGAAAATATTATCAGATCAGAA-AACAAAAAAAATATGTGCAT-CTCaaattgtgaa
gi|5 : AA-ATCATCTGACCAGAA-CACTGTGACAATATGCGCATACTTCATGTTGGTAcaact
gi|3 : TGAAAC-AGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAGCAAGTTTCATAGAATT----CCAACCTGAGGTTGTAGAGAAATAGC-CGGACAAGAATT--TGGTC--ATAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTT-CTGCAT-TTGGTAATGATGCATCCTAG--TAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAAT--A----TTC-CA--GACAAGAACT--TGG----------GGAT--GCACAT----ACGGAC----AA-A---G---TGGCGAC-----TA--TATGCTTCCCC-----CC--TTTAGGGGAGCATAAActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|4 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagAA-TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATT----CCAACCAGACGTTGTAGAGAAATAGAGCAGAGAAGAATT----------TTGACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAa
gi|33 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagcgcAA-CACAAAGACAATTTGTACAT-CTCCAT-TTGGTAG
gi|6 : TGGTGTTGATGTATCCTAGCAAGTTTC-T---ATT------AGCAC----TTGAGGAGCAGTAACGTGAAAAAGGATT--TAGT
gi|15 : agtcaacatgcgtaATCCTAGCTAGTTTTACAAAATTAAAACCAA-AT---GTTGTAGCGAAATAGCttaggacgcacgaacgcacggacaaaacagtgagtattgcttctctgaaatcattcggga
gi|18 : ttaaactaaaatgacactacgtgcatTAGCTAGTTTTACAAAATT----AAAACCAGAGGTTGTAGCGAAATA
gi|9 : gaacaaaatgactatatgtggatattaAAATT----CCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT--TGAT
gi|19 : GAGGTTAAAGAGAAATAGCCTGGACAAAAACT--TGGaaaggaagcactgacgccatagcagaaactacatgcttccccaaattttttttcagcaagcataaa
gi|25 : GAGGTTGTAGAGAAATAGCCTGAACAAGAACT--TGGggacgcacacacgcacagacagacgaagcagcgac
gi|22 : ccaGTTGAAGAGAAATAGCCCGGACAATAATTAGTGGTCGAATCGAggcagacggacg
gi|24 : TTGTAGGCAAATAGCCCTGACAAGAACT--TGGtgcacgcatggacga
gi|32 : agaaaTT--TGGTA--ATGGAAAGAATCAAAGGGCCATAACTggatgtacagatgga
gi|4 : AAATCATTCAACCGGAACAAAATGACAATATGCGCGT-T--------------------TCCTAG--TTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGCAA---T----A---TGAAGACAATAaaattgtgaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA---AA--TTGTCAAGAAAT--GAAAAATC-TG--AACAATAAGC--AG---------ACAGACAAGCACtgctcatctccacttggtaatgaggcatcctagcaagcttcataaaattccaaccagacgttgtagagaaatagagcagagaagaattttgacagaatgaaagggccataactccgtgaaaaatcatcgaaccggaacacaa
gi|8 : AATCATTGAACCGTAACAAAATGACAATATGCaatgatatgctcctttacttagttcagacattg
gi|4 : CGCAATATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAACCAGACGTTGTAGAGAAAT--atagaccctagctagttttttacaactatttaacaacaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|33 : caaatcattcaaccggaacaaaatgacaatatgcgcgtttcctagttagttttacaaaattaaaaccagaggttgtagAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTAagagcagagaagaattttgacagaatgaaagggccataactccgtgaaaaatcatcgaaccggaacacaa
gi|6 : AGTCAACATGCGTAT----------GGTGTTGATGTATCCTAG--CAAGTTTC-T---ATTAGCACTTGAG------GAGCAGT--A----ACG-TG--AAAAAGGATT--TAG----TT--TAGGAC--GCACGAACGCACGGAC----AA-A---A---CAGTGAG-----TA--T-TGCTTCTCg
gi|15 : ATCCTAG--CTAGTTTTACAAAATTAAAACCAAATGTTGTAGCGAAAT--tgaaatcattcggga
gi|18 : ttaaactaaaatgacactacgtgcatTAG--CTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAAT--agc
gi|9 : gaacaaaatgactatatgtggatattaAAATTCCAACCAGACACTGTAGAGAAATAGT----AC---A--GACTAGGATT--TGA----TA--AAGGAA--GCACTG----ACG--C----CATA---G---CAGAAAC-----TA--CATGCTTCCCC-----a
gi|19 : AGGTTAAAGAGAAAT--A----GCC-TG--GACAAAAACT--TGGGGACGC--ACACAC--GCACAG----ACAGAC----GA-A---G---CAGCGAC-----aaattttttttcagcaagcataaa
gi|25 : gAGGTTGTAGAGAAAT--A----GCC-TG--AACAAGAACT--TGG-----G--GCAGAC--GGACG
gi|22 : ccagGTTGAAGAGAAAT--A----GCC-CG--GACAATAATTAGTGG----TCGAATCGAT--GCACGC----ATGGAC----GA-
gi|12 : AAAT--T----AATACG--GACAAGAATT--TTG----T-----------G-ACGG----ACGGAC----GA-ACATT---CG--GAC-----TA--TATGCTTTCCCATT--TCCTTTTAGCGAAGCATAAA
gi|7 : ga--GACAAGGATT--TGG----------GGAT--GCACAG----ACAGACACATGC-A---T---CAATGAC-----TA--TATACTACCCAAAA--T----TTTGGGAAGCATAAAa
gi|27 : C--ACGAAC--GCACGC----ACGGAC----AA-A---G---CGGCGAC-----TA--TATGCTTaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|10 : gggacgcacgGAT--GCACGG----ACAGAC----AA-A---GCTACAGCTACATAAATTTATATGCTTGCCC-----T----TT-GGGGAGCCTAAA
gi|14 : gttatgttccgcaaacaaatcttgatgGAC--GAACAG----ACGGAC----AA-A---G---GGGCAGC-----TA--TATGCGCACCC-----TT---TT--GGGAGCA-AAAaataga
gi|31 : AC--GCACGG----ACGGAT----GA-A---G---CGGTGAC-----TA--TAT---------------------GGGGAGCATAAAtaagattaagttgcagcttgtaaa
gi|23 : CGC----ACAGAC----AA-A---G---CGGTGAC-----TA--TATGCTTCCTCGATTTTT--TTTCAGAAAGCATAAaa
gi|28 : g----ACGGAC----GA-A---G---CGGAGAC-----TA--TATGCTTCCCC------C--TTTTGGGGAGCATAAAc
gi|29 : GGGGAC-----TA--TAATCTTCCCC-----CC--TTTGGGGAAGCATAAa
gi|34 : gacaaaaactaCGAC-----TA--TATGCTTCCCC-----AC---TT---GGAGCATAAAt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTGTCCAGACAAGGATTCATTTGGATGCATGTATGCACAGACGGACAATGTGTTAGTTATATGCTCAACCTTCAGAGAGCATAATAAGGT
Unaligned ( gi|13 ): AAATCAATGAACAGAAACAAAATGACAATAAGTGCAGATCCTAGCTAGTTTAACGGAATTAAAACCAGAGGTAGCGAAATAGC
Unaligned ( gi|20 ): AGAGGTTATAGAGCAATAGTCCGAACAAGGATTTGGGGACACACGGATAGATTAAGGTTTCTATGCT
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|26 ): TAACAAAATGACAATATGAGCAGATCCTAGCTAGTTTTACAAAATTAAA
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111
lowQualScore : 11 4444444444444 11 1 666666666666666666666666666 111 55 4 4444 1 1 11 222 1 1 1 2 333333333 1111 1 1 1 22 1 1 2 1 111 00000000000000000000000 1 55555555 1111 333 111 33333333333333333 1111 33333333333 333333333333333
lowQualScore : 1 6 6 22 6 8888888888888 6 22 6 6 7 6 6 6 111111111111111111111111111 1 2 111 4 55 0 6 2222 7 5 6 22 1 6 6 222 7 5 7 0 7 0 1 1 555555555 1 7777 8 99 6 6 22 0 6 5 6 5 77 2 0 5 0 8 1 0 1 5 666 4 2 99999999999999999999999 6 8 55555555 4 1 3333 222 8 1 1 1 3 5 1 22 444 0 8 2 66666666666666666 1 0 0 55 55 55 4 4 1 3 666 1111 11111111111 5555 77777 2 444 0 7777777 888888888888888 66 3 3
lowQualScore : . . . .. . ............. . .. . . . . . . ........................... . . ... . .. . . .... . . . .. . . . ... . . . . . . . . ......... . .... . .. . . .. . . . . . .. . . . . . . . . . ... . . ....................... . . ........ . . .... ... . . . . . . . .. ... . . . ................. . . . .. .. .. . . . . ... .... ........... .... ..... . ... . ....... ............... .. . .
lowQualScore : 0 0 0 00 0 0000000000000 0 00 0 0 0 0 0 0 000000000000000000000000000 0 5 555 0 00 0 0 0000 0 0 0 00 0 0 0 000 0 0 0 7 3 0 0 0 888888888 0 8888 0 22 7 7 00 2 0 0 0 0 55 5 5 0 0 0 4 7 0 7 666 0 5 55555555555555555555555 0 0 00000000 6 4 0000 000 2 0 0 4 3 0 0 44 000 8 0 5 11111111111111111 6 7 7 55 55 55 0 0 4 6 999 7777 33333333333 0000 55555 4 444 6 6666666 222222222222222 99 1 1
consensus : NNNNNNNNNNTGGTAATGGGCAGAATCAAAGGGCCACAACTTTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAAT----GAGAAAT-------GATTTGGTAATGNANGNAATCNAAGGGCCACAACTC--TGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTAGTCTNTGACAATA--TGC--ATATN-ATAGCTA--GTT-TTACAA-AATTAAAACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGCAAAA-ATCATCNAACCGGAACACAANGACAATATGCGCAT-CTCCAT-TNGNTAGT------NN--TACAAAATTGAAACCAGAGGTTGTAG-G-AAA-------CACGAAGACAATATGCGCATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCT--GA-G-TTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCCCGGACAAGAATTTGGTCACGGACA---GAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---T-CT--GCA---T-TTGGTAATGATGCA--TCCTAG--CAA--GTT-TC-ACAA-AATT-CCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCCC---C-------TC--TTC-GG-GG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTNATGGACAGAATCAAAGGGCCATAACTCCGTGAAAAA-TCATCGAACCGGAACACGAAGACAATATGCGCATTCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAAC-ACCGGAGTTGTAGAGAAATAGCCGGAGATTTGGTNATGGACAGAATCAAAGGGCCATAACTCCGTGAAAAA-ATCATCGAACCGGAACACAAAGACAATATGCGCATCTNCATTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGAACGCGGCTA-TTTNTNACAATA--TNC--ATNTA-ACAGCAA--GTT-TTACAA-AATTNNAACCAGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACAGACGCAATGAAAGG--GCCATAACTCCGTG-AAAA-ATCATCGAACCGGAACACAANGACAATATGCGCAT-CTCCAT-TTGGTAGT------GA--TGCA----T----CCAGAGGTTGTAG-G-AA--------CACGAAGACAATATGCGCATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACNN--GA-G-TTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACNGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACGAAGACAATATGCGCATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCNGAGGTTGTAGAGAAATAGCCCGGACAAGAATTTGGTCATNGACA---GAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---T-CT--NCA---T-TTGGTAATGATGCA--TCCTAG--CAA--GTT-TC-ACAA-AATT-CCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCCC---C-------TC--TTT-GG-GG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACTTTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAAT----GAGAAAT-------GATTTGGTAATGTATGCAATCTAAGGGCCACAACTC--TGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTA-TCTATGACAA-----GC--ATGTA-A-AACAA--GTT-TCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAA-ATCACCAAACCGGAACACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGT------GA--TGCA----T----CCNNNNNNNNNNG-G-AA--------CACAAAGACAATATGCGCATCTCCACTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAATAT--GG-GGTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCACTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGGTCATCGACT---GAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCA---T-CT--GCA---C-TTGGTAATGATGCA--TCCTAG--CAA--GTT-TC-ATAA-AATT-CCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCCC---C-------TCG-TTG-GG-GG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGCC------------C--TTT-GG-GG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--CA---A-------CC--TTC-AG-AG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCC---CATT----TCCTTTT-AGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGAAACAAAATGACAATAAGTGCA----------------------------G-A--TCCTAG--CTA--GTT-TA-ACGG-AATT-AAAACCAGAG---GTAGCGAAATAGCa
gi|13 : TGACAATAAGTGC--AGATC-CTAGCTA--GTT-TAACGG-AATTAAAACCAGAG---GTAGCGAAATAGC
gi|14 : aaatcaatgaacagaaacaaaaGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCACC---C-------TT--TT---G-GG-AGCA-AAA
gi|15 : TGACACTACGTGC--ATATC-CTAGCTA--GTT-TTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaaAAATCATTGAACCGGATCA-AAA-------------------T--GTA----------AAT-ATGCA--C---AG----A--GTT-TT-ACCA-AATT-TAAACCAGAGGTTGTGG
gi|16 : cgcTCAAAATG--TAA--ATATGCACAG--A--GTT-TTACCA-AATTTAAACCAGAGGTTGTGG
gi|17 : cgcaaatcattgaaccggaATGAAAGGATGGCATAAATCC-TG-AAAATATTATCAGATCAGAAAACAAAAAAAATATGTGCAT-CTCCA
gi|18 : TGACTATA--TGTGGATATT-ATAGCTA--GTT-TTACAA-AATTAAAACCAGAGGTTGTAGCGAAATAact
gi|19 : gaacaaaaGAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------
gi|2 : AA-ATCATTTAACCGGAACAAAATGACAATATACGCAG-ATCC---TAGCTAGTTTTACAGAATTATA----A----CCAGAGGTTGTAG-G-GAAATAGCGTCATGGCGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACATTTGA---TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCTCAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCACAAATA---GGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCA---T-CT--GCA---T-TTGGTAATGATGCA--TCCTAG--TAA--GTT-TC-ATAA-AATT-CCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : cG-G-AA--------CAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCT--GAAG-TTGTAGAGAAATAGCCCGGACAATAATTTGGTCACAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACAAACA---TAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---G-CT--GCA---C-TTGGTAATGATGCA--TCCTAG--CAA--GTT-TC-ATAA-AATT-Cataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---atgacacatggactgacggacggacggacggacgtt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCCT---CGATTTT-TT--TTC-AG-AA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : ATGA-GCAGATCCTAG--CTA--GTT-TT-ACAA-AATT-
gi|27 : taacaaaatgacaat-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTTaaa
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCCC---C-------CT--TTT-GG-GG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCCC---C-------CC--TTT-GG-GGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATAT-ATC--T-TAGCTAGT------TT--TACAAAATTGAAACCAGAGGTTGTAGTG-AAACAGCAT-CATGAAGACAATATGCACATCTCCACTTGGTAATGATTCATCCTAGCAAGTTTCATAGAATTCCAACCT--GAGG-TTGTAGAGAAATAGC-CGGACAAGAATTTGGTCATAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA-CAAAGTGGCt
gi|3 : CATGAAGACAATATGCACATCTCCACTTGGTAATGATTCATCCTAGCAAGTTTCATAGAATTCCAACCTGAGGTTGTAGAGAAATAGCC-GGACAAGAATTTGGTCATAGACA---GAATCAAAG-GGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTT---T-CT--GCA---T-TTGGTAATGATGCA--TCCTAG--TAA--GTT-TC-ATAA-AACT-CCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACT----TGG-----------GGATGCACAT----ACGGAC----AA-AG---TGGCGAC-------TATATGCTTCCC---C-------CC--TTTAGG-GG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|31 : caaaatgacaatatgcatatatcttagctagttttacaaaattgaaaccagaggttgtagtgaaacagcatACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATA-------------------------T-GG-GG-AGCATAAAa
gi|32 : TTTGGTAATGGAAAGAATCAAAGGGCCATAACTaa
gi|33 : AACACAAAGACAATTTGTACAT-CTCCAT-TTGGTAGaaattgtgaa
gi|34 : CGAC-------TATATGCTTCCC---C-------AC--TT-----GG-AGCATAAA
gi|4 : AA-ATCATTCAACCGGAACAAAATGACAATATGCGCGT-TTCC---TAGTTAGT------TT--TACAAAATTAAAACCAGAGGTTGTAGCGCAA--------TATGAAGACAATATGCTCATCTCCACTTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATTCCAACCA--GACG-TTGTAGAGAAATAGAGCAGAGAAGAATTT------TGACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAA-ATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : AAATCATCTGACCAGAACACTGTGACAATATGCGCA---TACT--TCA---TGTTGGTACTA----------TAGAACAA--TTT-TCTCCAA-AATTGTCA---AGAAAT----GAAAAAT---CTGAACAATAA------------------------GCA--G----ACAGAC-----A-AG---C-ACAAT-------GATATGCTCCctatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : AGTCAACATGCGTA---T---------------GGTGTTGATGTA--TCCTAG--CAA--GTT-TC-T-----ATT-------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCTC---tttacttagttcagacattg
gi|7 : GACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACCCAAAA-------T---TTT-GG-GA-AGCATAAAtgaaatcattcggga
gi|8 : AATCATTGAACCGTAACAAAATGACAATATGCATAGACC-CTAGCTAGTTT-TTTACAACTATTTA--AC--AA--CAATTATTATT-ACAACAATT-ATAACCAGAGGTTGTAGCAAAATAGCaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : GCTAGTTTTTTACAA-----CT--ATTTA-ACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGg
gi|9 : aatcattgaaccgtaacaaaatgacaatatgcatagaccctaA-AATT-CCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCCC---CAAATTTTTT--TTC-AG-CA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 333 1 222222222222 11 1 2222 1 1 33333333333333333 11 333 111 22222 1111111 111 1111 22222222222 444444444444444444444
lowQualScore : 2 555 1 1 1 1 0 7 5 1 222222222222 7 555 6 88 1 1 5 2 1 3 1 999 2222 5 22 4 0 3 1 88888888888888888 1 11 222 8 1 1 1 0 0 2 444 8 66 0 8 1 00000 6 4444444 2 99 99 6 222 5 88 3 1 2 2222 66666666666 5555 77777 2 444 0 1 8888888 333333333333333333333 8 3
lowQualScore : . ... . . . . . . . . ............ . ... . .. . . . . . . . ... .... . .. . . . . ................. . .. ... . . . . . . . ... . .. . . . ..... . ....... . .. .. . ... . .. . . . .... ........... .... ..... . ... . . ....... ..................... . .
lowQualScore : 5 000 0 0 0 0 7 3 0 0 000000000000 2 777 7 55 0 0 0 5 0 9 0 111 2222 9 00 4 5 3 8 66666666666666666 4 00 000 2 0 0 4 2 2 5 000 0 00 8 0 4 88888 7 5555555 5 22 22 7 333 7 77 2 0 3 7777 88888888888 3333 66666 5 777 3 2 1111111 888888888888888888888 4 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTAGTCTNTGACAA-TA--TG--C--ATATCNTAGCTAGTTTTACAA-AATTAAAACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGGAACAAAATGACAATATGCGCAT-CTCCATTAGCTAGTTTTACAGAATTAAAACCAGAGGTTGTAG-GGAA-------CA------CGAAGACAATATGCGCATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAAC--CTGA-G-TTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACGGACAGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---T-CT-GC-A---T-TTGGTAATGATGCATCCTAG--CAA--GTT-TC-ATAA-AATT-CCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGNANGNAATCNAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTAGTCTNTGACAA-TA--TG--C--ATATNATAGCTAGTTTTACAA-AATTAAAACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGCAAAAATCATCNAACCGGAACACAANGACAATATGCGCAT-CTCCATTNGNTAGTNNTACAAAATTGAAACCAGAGGTTGTAG-GAAA-------CA------CGAAGACAATATGCGCATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAAC--CTGA-G-TTGTAGAGAAATAGCGCGGACAAGAATTTGGTCACAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCCCGGACAAGAATTTGG---T-CACGGACAGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---T-CT-GC-A---T-TTGGTAATGATGCATCCTAG--CAA--GTT-TC-ACAA-AATT-CCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTA-TCTATGACAA------G--C--ATGTAA-AACAAGTTTCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGGAACACAAAGACAATATGCGCAT-CTCCACTTGGTAGTGATGCA----T----CCNNNNNNNNNNG-GAA--------CA------CAAAGACAATATGCGCATCTCCACTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAAT--ATGG-GGTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCACTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCA---T-CT-GC-A---C-TTGGTAATGATGCATCCTAG--CAA--GTT-TC-ATAA-AATT-CCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCC------C---C-------TCGTTGGGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGC------C------------C-TTTGGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--C------A---A-------CC-TTCAGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCCCATTTC---C-------TT-TTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGAAACAAAATGACAATAAGTGCAG-ATCC--TAGCTAGTTTAACGGAATTAAAACCAGAGGTa
gi|13 : TGACAA-TAAGTG--C--AGATCCTAGCTAGTTTAACGG-AATTAAAACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaaGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCAC------C---C-------TT-TT--GGG-AGCA-AAA
gi|15 : TGACAC-TACGTG--C--ATATCCTAGCTAGTTTTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaaAAATCATTGAACCGGATCAAAATGTAAATATGCACA----------G--AGTTTTACCAAATTTAAACCAGAGGTTGTGG-
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAAAAAATATGTGCAT-CTCCA
gi|18 : TGACTA-TA--TG--TGGATATTATAGCTAGTTTTACAA-AATTAAAACCAGAGGTTGTAGCGAAATAact
gi|19 : gaacaaaaGAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------
gi|2 : AAATCATTTAACCGGAACAAAATGACAATATACGCAG-ATCC--TAGCTAGTTTTACAGAATTATAACCAGAGGTTGTAG-GGAAATAGCGTCA------TGGCGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACATTTGA---TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCTCAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCA---T-CT-GC-A---T-TTGGTAATGATGCATCCTAG--TAA--GTT-TC-ATAA-AATT-CCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : c-GGAA-------CA------GAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAAC--CTGAAG-TTGTAGAGAAATAGCCCGGACAATAATTTGGTCACAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCA---G-CT-GC-A---C-TTGGTAATGATGCATCCTAG--CAA--GTT-TC-ATAA-AATT-Cataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---atgacacatggactgacggacggacggacggacgtt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCC------T---CGATTTT-TT-TTCAGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : TGACAA-TA--TGAGC--AGATCCTAGCTAGTTTTACAA-AATTAAA
gi|27 : taacaaaa-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCC------C---C-------CT-TTTGGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCC------C---C-------CC-TTTGGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATAT-ATC--TTAGCTAGTTTTACAAAATTGAAACCAGAGGTTGTAGTGAAA-------CAGCATCATGAAGACAATATGCACATCTCCACTTGGTAATGATTCATCCTAGCAAGTTTCATAGAATTCCAAC--CTGAGG-TTGTAGAGAAATAGC-CGGACAAGAATTTGGTCATAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT------------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TTTGG---T-AATGGAAAGAATCAAAG-GGCCATAACTaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaaattgtgaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCATTTGGTAG
gi|34 : CGAC-------TATATGCTTCC------C---C-------AC-TT---GG-AGCATAAA
gi|4 : AAATCATTCAACCGGAACAAAATGACAATATGCGCGT-TTCC--TAGTTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGCAA-------TA------TGAAGACAATATGCTCATCTCCACTTGGTAATGAGGCATCCTAGCAAGCTTCATAAAATTCCAAC--CAGACG-TTGTAGAGAAATAGAGCAGAGAAGAATTT--T----GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCAT--GTTGGTACTATAGAA
gi|5 : AAATCATCTGACCAGAACACTGTGACAATATGCGCA---TACT-TC-A---TGTTGGTACTA--------TAGAACAA--TTT-TCTCCAA-AATTGTCA---AGAAAT----GAAAAAT---CTGAACAATAA------------------------GCA--G----ACAGAC-----A-AG---C-ACAAT-------GATATGCTCCcaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : T-GC-G---T-ATGGTGTTGATGTATCCTAG--CAA--GTT-TC-T-----ATT-------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCT------C---TGAAA---TCATTCGGGtttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACC------CAAAA-------T--TTTGGGA-AGCATAAAa
gi|8 : AATCATTGAACCGTAACAAAATGACAATATGCATAGACC-CTAGCTAGTTT-TTTACAACTATTTAAC--AA--CAATTATTATT-ACAACAATT-ATAACCAGAGGTTGTAGCAAAATAGCaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : GCTAGTTTTTTACAACTA--TT--T--A-ACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGg
gi|9 : aatcattgaaccgtaacaaaatgacaatatgcatagaccctaA-AATT-CCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCC------C---CAAATTTTTT-TTCAGCA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 222 4 22 11 11 11 555555555555555555555555555555555 11 1 3333333 4444444 2222222222 11 11111 11111 11 1 1111 222222222 444444444444444444444
lowQualScore : 1 111 0 7 0 1 0 22 11 11 11 11 111111111111111111111111111111111 88 1 1 5 1 33 66 6666666 1 66 6 3333333 2 6 6 99 5555555555 00 66666 1 0 0 2 88888 22 1 3 0 0 8 6 3 0 11 2 1 4444 444444444 1 5555 5555 2 555 2 8888888 333333333333333333333 8 3
lowQualScore : . ... . . . . . .. .. .. .. .. ................................. .. . . . . .. .. ....... . .. . ....... . . . .. .......... .. ..... . . . . ..... .. . . . . . . . . .. . . .... ......... . .... .... . ... . ....... ..................... . .
lowQualScore : 0 555 7 3 0 0 8 00 00 00 88 00 666666666666666666666666666666666 55 0 0 0 0 11 99 4444444 4 22 7 3333333 2 7 7 22 8888888888 33 77777 4 2 2 5 55555 55 2 2 0 2 0 7 2 8 66 1 1 0000 111111111 4 3333 3333 7 000 0 7777777 888888888888888888888 4 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTA-TCTATGACAATA-GTGC--AT--ATCCTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATCC--TAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGGG-AA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTAGTCTNTGACAATA--TGC--AT--ATCNTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCATCTCCATTAGCTAGTTTTACAGAATTAAAACCAGAGGTTGTAGGG-AA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACGGACAGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTA-TCTATGACAA-----GC--AT--GTAA-AACAAG--TTTCACAA------------AATTC--C-------------AACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGG--AACACAAAGACAATATGCGCATCTCCACTTGGTAGTGATGC---------ATCCNNNNNNNNNNGG-AA-------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAG--CAAGTTTCATAAAATTCCAAT--ATGGG-GTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCA-----CTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCC------C---C-------TCGTTGGGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGC------C------------C-TTTGGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--C------A---A-------CC-TTCAGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCCCATTTC---C-------TT-TTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGA--AACAAAATGACAATAAGTGCAGATCC--TAGCTAGTTTAACGGAATTAAAACCAGAGGTa
gi|13 : TGACAATAAGTGC--AG--ATCCTAGCTAG--TTTAACGG------------AATTA--A-------------AACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaaGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCAC------C---C-------TT-TT--GGG-AGCA-AAA
gi|15 : TGACACTACGTGC--AT--ATCCTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaaAAATCATTGAACCGG--ATCAAAATGTAAATATGCACA---------G--AGTTTTACCAAATTTAAACCAGAGGTTGTGG
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAA--AAAATATGTGCATCTCCA
gi|18 : TGACTATA--TGTGGAT--ATTATAGCTAG--TTTTACAA------------AATTA--A-------------AACCAGAGGTTGTAGCGAAATAact
gi|19 : gaacaaaaGAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------
gi|2 : AAATCATTTAACCGG--AACAAAATGACAATATACGCAGATCC--TAGCTAGTTTTACAGAATTATAACCAGAGGTTGTAGGG-AAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACATTT-GA--TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCT-----CAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : cGG-AA-------CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAG--TAAGTTTCATGAAATTCCAAC--CT-GAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCA-----CAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|2 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaacc--ACGGACGGACGG----ACGGAC----Gatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagtaagtttcataaaattccaacttcaggttgtagagaaatagcgcggacaagaatttggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---tt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCC------T---CGATTTT-TT-TTCAGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : --AACAAAATGACAATATGAGCAGATCC--TAGCTAGTTTTACAAAATTAAA
gi|27 : t-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCC------C---C-------CT-TTTGGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCC------C---C-------CC-TTTGGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATATATC--TTAGCTAGTTTTACAAAATTGAAACCAGAGGTTGTAGTG-AAACAGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAG--CAAGTTTCATAGAATTCCAAC--CT-GAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGTCA-----TAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT------------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTA
gi|34 : CGAC-------TATATGCTTCC------C---C-------AC-TT---GG-AGCATAAAg
gi|4 : AAATCATTCAACCGG--AACAAAATGACAATATGCGCGTTTCC--TAGTTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGCAA-------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAAC--CA-GACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--T---------GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : G-AA-------CACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA-------A-ATTGTCAAGAAATG--------AAAAATCTGAACAATAAGCAGACAGActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : aaatcatctgaccaTGCGT-ATGGTGTTGATGTATCCTAGCAAGTTTC-TA---TT------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCT------C---TGAAA---TCATTCGGGcaagcacaatgatatgctcctttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACC------CAAAA-------T--TTTGGGA-AGCATAAAa
gi|8 : AATCATTGAACCGT--AACAAAATGACAATATGCATAGACCC--TAGCTAGTTTTTTACAACTAaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : TGACAATA--TGC--ATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGtttaacaacaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|9 : aatcattgaaccgtaacaaaaAAATTCCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCC------C---CAAATTTTTT-TTCAGCA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 222 3333 111111 11 222222222222222222222222222222222 11 1 3333333 2222222222 11 11111 11111 1 1111 222222222 444444444444444444444
lowQualScore : 1 111 2 2 999 6 0 0 7 4444 888888 88 222222222222222222222222222222222 0 88 1 1 5 1 33 66 44 55 66 0 66 4 5 7777777 2 6 6 99 5555555555 00 66666 1 0 0 2 88888 1 4 3 0 0 8 6 3 0 11 1 1 4444 444444444 1 5555 5555 2 555 2 8888888 333333333333333333333 8 3
lowQualScore : . ... . . ... . . . . .... ...... .. ................................. . .. . . . . .. .. .. .. .. . .. . . ....... . . . .. .......... .. ..... . . . . ..... . . . . . . . . . .. . . .... ......... . .... .... . ... . ....... ..................... . .
lowQualScore : 0 555 5 5 000 5 8 7 3 7777 333333 33 000000000000000000000000000000000 7 55 0 0 0 0 11 11 33 55 11 8 11 4 7 1111111 2 7 7 22 8888888888 33 77777 4 2 2 5 55555 2 2 2 0 2 0 7 2 8 66 0 1 0000 111111111 4 3333 3333 7 000 0 7777777 888888888888888888888 4 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA-GTGCATA--TCCTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAGAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTATCTATGACAA-----GCATG--TAA-AACAAG--TTTCACAA------------AATTC--C-------------AACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGG--AACACAAAGACAATATGCGCATCTCCACTTGGTAG--TGATGC------------ATCCNNNNNNNNNN-GGAA-------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAG--CAAGTTTCATAAAATTCCAAT--ATGGG-GTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCA-----CTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCC------C---C-------TCGTTGGGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGC------C------------C-TTTGGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--C------A---A-------CC-TTCAGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCCCATTTC---C-------TT-TTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGA--AACAAAATGACAATAAGTGCAGATC--CTAGCTAG--TTTAACGG--AATTAA-AACCAGAGGTa
gi|13 : TAGCTAGTTTAACGGAATTAAAACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaatgacaataagtgcagatccGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCAC------C---C-------TT-TT--GGG-AGCA-AAA
gi|15 : ATGACACTACGTGCATA--TCCTAGCTAG--TTTTACAA------------AATTA--A-------------AACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaAAATCATTGAACCGG--ATCAAAATGTAAATATGCACAG-----------AG--TTTTACCA--AATTTA-AACCAGAGGTTGTGG-
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAA--AAAATATGTGCATCTC--C
gi|18 : G--AACAAAATGACTATATGTGGATATT--ATAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-CGAA-------aact
gi|19 : GAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------ata
gi|2 : AAATCATTTAACCGG--AACAAAATGACAATATACGCAGATC--CTAGCTAG--TTTTACAG--AATTAT-AACCAGAGGTTGTAG-GGAAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACATTT-GA--TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCT-----CAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : c-GGAA-------CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAG--TAAGTTTCATGAAATTCCAAC--CT-GAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCA-----CAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|2 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaacc--ACGGACGGACGG----ACGGAC----Gatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagtaagtttcataaaattccaacttcaggttgtagagaaatagcgcggacaagaatttggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---tt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCC------T---CGATTTT-TT-TTCAGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : --AACAAAATGACAATATGAGCAGATC--CTAGCTAG--TTTTACAA--AATTAA-A
gi|27 : t-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCC------C---C-------CT-TTTGGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCC------C---C-------CC-TTTGGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATATATC--TTAGCTAG--TTTTACAA--AATTGA-AACCAGAGGTTGTAG-TGAAACAGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAG--CAAGTTTCATAGAATTCCAAC--CT-GAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGTCA-----TAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT------------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTA
gi|34 : CGAC-------TATATGCTTCC------C---C-------AC-TT---GG-AGCATAAAg
gi|4 : AAATCATTCAACCGG--AACAAAATGACAATATGCGCGTTTC--CTAGTTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAGCGCAA-------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAAC--CA-GACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--T---------GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : GAA-------CACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA-------A-ATTGTCAAGAAATG--------AAAAATCTGAACAATAAGCAGACAGActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : aaatcatctgaccaTGCGT-ATGGTGTTGATGTATCCTAGCAAGTTTC-TA---TT------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCT------C---TGAAA---TCATTCGGGcaagcacaatgatatgctcctttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACC------CAAAA-------T--TTTGGGA-AGCATAAAa
gi|8 : AATCATTGAACCGT--AACAAAATGACAATATGCATAGACC--CTAGCTAGTTTTTTACAACTATTTAACAACaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : ATGACAATA--TGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|9 : aatcattgaaccgtaacaaaAAATTCCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCC------C---CAAATTTTTT-TTCAGCA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 222 2222 222222222222222222222222222222222222222222 1 11 1 3333333 2222222222 11 11111 11111 1 1111 222222222 444444444444444444444
lowQualScore : 1 111 1 1 333 6 0 0 7 4444 222222222222222222222222222222222222222222 3 7 88 1 1 5 1 33 66 44 55 66 0 66 4 5 7777777 2 6 6 99 5555555555 00 66666 1 0 0 2 88888 1 4 3 0 0 8 6 3 0 11 1 1 4444 444444444 1 5555 5555 2 555 2 8888888 333333333333333333333 8 3
lowQualScore : . ... . . ... . . . . .... .......................................... . . .. . . . . .. .. .. .. .. . .. . . ....... . . . .. .......... .. ..... . . . . ..... . . . . . . . . . .. . . .... ......... . .... .... . ... . ....... ..................... . .
lowQualScore : 0 555 0 0 000 5 8 7 3 7777 333333333333333333333333333333333333333333 3 7 55 0 0 0 0 11 11 33 55 11 8 11 4 7 1111111 2 7 7 22 8888888888 33 77777 4 2 2 5 55555 2 2 2 0 2 0 7 2 8 66 0 1 0000 111111111 4 3333 3333 7 000 0 7777777 888888888888888888888 4 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTAAAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTATCTATGACAA-----GCATG--TAA-AA--------------CAAGTT--------------TCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGG--AACACAAAGACAATATGCGCATCTCCACTTGGTAG--TGATGC------------ATCCNNNNNNNNNN-GGAA-------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAG--CAAGTTTCATAAAATTCCAAT--ATGGG-GTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCA-----CTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCC------C---C-------TCGTTGGGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGC------C------------C-TTTGGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--C------A---A-------CC-TTCAGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCCCATTTC---C-------TT-TTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGA--AACAAAATGACAATAAGTGCAGATC--CTAGCTAG--TTTAACGG--AATTAA-AACCAGAGGTa
gi|13 : TAGCTAGTTTAACGGAATTAAAACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaatgacaataagtgcagatccGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCAC------C---C-------TT-TT--GGG-AGCA-AAA
gi|15 : ATGACACTACGTGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaAAATCATTGAACCGG--ATCAAAATGTAAATATGCACAG-----------AG--TTTTACCA--AATTTA-AACCAGAGGTTGTGG-
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAA--AAAATATGTGCATCTC--C
gi|18 : G--AACAAAATGACTATATGTGGATATT--ATAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-CGAA-------aact
gi|19 : GAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------ata
gi|2 : AAATCATTTAACCGG--AACAAAATGACAATATACGCAGATC--CTAGCTAG--TTTTACAG--AATTAT-AACCAGAGGTTGTAG-GGAAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACATTT-GA--TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCT-----CAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : c-GGAA-------CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAG--TAAGTTTCATGAAATTCCAAC--CT-GAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCA-----CAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|2 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaacc--ACGGACGGACGG----ACGGAC----Gatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagtaagtttcataaaattccaacttcaggttgtagagaaatagcgcggacaagaatttggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---tt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCC------T---CGATTTT-TT-TTCAGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : --AACAAAATGACAATATGAGCAGATC--CTAGCTAG--TTTTACAA--AATTAA-A
gi|27 : t-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCC------C---C-------CT-TTTGGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCC------C---C-------CC-TTTGGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATATATC--TTAGCTAG--TTTTACAA--AATTGA-AACCAGAGGTTGTAG-TGAAACAGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAG--CAAGTTTCATAGAATTCCAAC--CT-GAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGTCA-----TAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT------------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTA
gi|34 : CGAC-------TATATGCTTCC------C---C-------AC-TT---GG-AGCATAAAg
gi|4 : AAATCATTCAACCGG--AACAAAATGACAATATGCGCGTTTC--CTAGTTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAGCGCAA-------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAAC--CA-GACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--T---------GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : GAA-------CACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA-------A-ATTGTCAAGAAATG--------AAAAATCTGAACAATAAGCAGACAGActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : aaatcatctgaccaTGCGT-ATGGTGTTGATGTATCCTAGCAAGTTTC-TA---TT------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCT------C---TGAAA---TCATTCGGGcaagcacaatgatatgctcctttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACC------CAAAA-------T--TTTGGGA-AGCATAAAa
gi|8 : AATCATTGAACCGT--AACAAAATGACAATATGCATAGACC--CTAGCTAGTTTTTTACAACTATTTAACAACaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : ATGACAATA--TGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|9 : aatcattgaaccgtaacaaaAAATTCCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCC------C---CAAATTTTTT-TTCAGCA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 222 2222 222222222222222222222222222222222222222222 1 11 1 3333333 2222222222 11 11111 11111 1 1111 222222222 444444444444444444444
lowQualScore : 1 111 1 1 333 6 0 0 7 4444 222222222222222222222222222222222222222222 3 1 88 1 1 5 1 33 66 44 55 66 0 66 4 5 7777777 2 6 6 99 5555555555 00 66666 1 0 0 2 88888 1 4 3 0 0 8 6 3 0 11 1 1 4444 444444444 1 5555 5555 2 555 2 8888888 333333333333333333333 8 3
lowQualScore : . ... . . ... . . . . .... .......................................... . . .. . . . . .. .. .. .. .. . .. . . ....... . . . .. .......... .. ..... . . . . ..... . . . . . . . . . .. . . .... ......... . .... .... . ... . ....... ..................... . .
lowQualScore : 0 555 0 0 000 5 8 7 3 7777 333333333333333333333333333333333333333333 3 0 55 0 0 0 0 11 11 33 55 11 8 11 4 7 1111111 2 7 7 22 8888888888 33 77777 4 2 2 5 55555 2 2 2 0 2 0 7 2 8 66 0 1 0000 111111111 4 3333 3333 7 000 0 7777777 888888888888888888888 4 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTATCTATGACAA-----GCATG--TAA-AA--------------CAAGTT--------------TCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGG--AACACAAAGACAATATGCGCATCTCCACTTGGTAG--TGATGC------------ATCCNNNNNNNNNN-GGAA-------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAG--CAAGTTTCATAAAATTCCAAT--ATGGG-GTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCA-----CTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCC------C---C-------TCGTTGGGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTTGC------C------------C-TTTGGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--C------A---A-------CC-TTCAGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCCCATTTC---C-------TT-TTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGA--AACAAAATGACAATAAGTGCAGATC--CTAGCTAG--TTTAACGG--AATTAA-AACCAGAGGTa
gi|13 : TAGCTAGTTTAACGGAATTAAAACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaatgacaataagtgcagatccGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGCGCAC------C---C-------TT-TT--GGG-AGCA-AAA
gi|15 : ATGACACTACGTGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaAAATCATTGAACCGG--ATCAAAATGTAAATATGCACAG-----------AG--TTTTACCA--AATTTA-AACCAGAGGTTGTGG-
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAA--AAAATATGTGCATCTC--C
gi|18 : G--AACAAAATGACTATATGTGGATATT--ATAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-CGAA-------aact
gi|19 : GAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------ata
gi|2 : AAATCATTTAACCGG--AACAAAATGACAATATACGCAGATC--CTAGCTAG--TTTTACAG--AATTAT-AACCAGAGGTTGTAG-GGAAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACATTT-GA--TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCT-----CAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : c-GGAA-------CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAG--TAAGTTTCATGAAATTCCAAC--CT-GAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCA-----CAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|2 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaacc--ACGGACGGACGG----ACGGAC----Gatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagtaagtttcataaaattccaacttcaggttgtagagaaatagcgcggacaagaatttggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---tt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCC------T---CGATTTT-TT-TTCAGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : --AACAAAATGACAATATGAGCAGATC--CTAGCTAG--TTTTACAA--AATTAA-A
gi|27 : t-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCC------C---C-------CT-TTTGGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCC------C---C-------CC-TTTGGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATATATC--TTAGCTAG--TTTTACAA--AATTGA-AACCAGAGGTTGTAG-TGAAACAGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAG--CAAGTTTCATAGAATTCCAAC--CT-GAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGTCA-----TAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT------------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTA
gi|34 : CGAC-------TATATGCTTCC------C---C-------AC-TT---GG-AGCATAAAg
gi|4 : AAATCATTCAACCGG--AACAAAATGACAATATGCGCGTTTC--CTAGTTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAGCGCAA-------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAAC--CA-GACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--T---------GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : GAA-------CACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA-------A-ATTGTCAAGAAATG--------AAAAATCTGAACAATAAGCAGACAGActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : aaatcatctgaccaTGCGT-ATGGTGTTGATGTATCCTAGCAAGTTTC-TA---TT------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCT------C---TGAAA---TCATTCGGGcaagcacaatgatatgctcctttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACC------CAAAA-------T--TTTGGGA-AGCATAAAa
gi|8 : AATCATTGAACCGT--AACAAAATGACAATATGCATAGACC--CTAGCTAGTTTTTTACAACTATTTAACAACaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : ATGACAATA--TGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|9 : aatcattgaaccgtaacaaaAAATTCCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCC------C---CAAATTTTTT-TTCAGCA-AGCATAAA
blockSeqs : A AAA A G AAA A A TACG GACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTA C A AT G A . A TG AA GA . TT CT C C ATAGCGT T A G AA CATTTGA CA ATAAG C C GGATG A A A T A G A TT A C CATT GGACGC T ACGC ACAT T CTA C ATAAATT CCAAATTTTTT T A
blockSeqs : G . TA TCCTAGCTAGTT . T TG . TC . . . . . ACAGCAT G . . . CCTGAAG CC . T G T A A A . . . A CA T A AG ATGC T . . . . T . CCATTTCCTT C .
blockSeqs : . CA . TA . . . . . . T . . . CCTGAGG AG . T C T T G . . . . . A T C . TCGA C . . . . C . TCGATTTTTT A .
blockSeqs : TT . GA . . . . . . T . . . CCAGACG C . C . . A G . TG C . . . . C . CTGAAATCA C .
blockSeqs : TC . GA . . . . . . C . . . AA . . . A C . TC C . . . . T . CAAAAT T .
blockSeqs : TG . TA . . . . . . T C . TT C . . . . C . AACC T .
blockSeqs : . TT . . . . G . TA T . . . . A . CCTT C .
blockSeqs : . GA . . . . A . . C . . . . G . CCCT T .
blockSeqs : G . . . A . . . . T . CCCC C .
blockSeqs : A . . . . C . CCAC . .
blockSeqs : . . . . . T . CC . .
blockSeqs : . . . . . T . . .
blockSeqs : . . . . A .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : ** CCCC*****************
originalCons : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCC------C---C-------TC-TTCGGGG-AGCATAAA
finalCons : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCCCCCC-----------------TTCGGGG-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 222 2222 222222222222222222222222222222222222222222 1 11 1 3333333 2222222222 11 11111 11111 1 1111 222222222 3333333333333333
lowQualScore : 1 111 1 1 333 6 0 0 7 4444 222222222222222222222222222222222222222222 3 1 88 1 1 5 1 33 66 44 55 66 0 66 4 5 7777777 2 6 6 99 5555555555 00 66666 1 0 0 2 88888 1 4 3 0 0 8 6 3 0 11 1 1 4444 444444444 1 5555 5555 2 555 2 8888888 0 5555555555555555 999 3
lowQualScore : . ... . . ... . . . . .... .......................................... . . .. . . . . .. .. .. .. .. . .. . . ....... . . . .. .......... .. ..... . . . . ..... . . . . . . . . . .. . . .... ......... . .... .... . ... . ....... . ................ ... .
lowQualScore : 0 555 0 0 000 5 8 7 3 7777 333333333333333333333333333333333333333333 3 0 55 0 0 0 0 11 11 33 55 11 8 11 4 7 1111111 2 7 7 22 8888888888 33 77777 4 2 2 5 55555 2 2 2 0 2 0 7 2 8 66 0 1 0000 111111111 4 3333 3333 7 000 0 7777777 8 6666666666666666 333 3
consensus : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCCC-----C-------CC-TTC--GGGG-AGCATAAA
Reference ( family-165 ) : NNNNNNNNNNTGGTAATGGGNAGAATCAAAGGGCCACAACTAAATTGTGAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTNACGNAATTNNNACCAGAGGTTGTAGAGAAATAGCCCGGACAAGAACTTGGGGACGGACGGACGGACGCGGCTATCTATGACAATA--TGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTANAACCAAAGGTTGTAGCGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGGATGNCATAANTCCGTGNAAAAATCATCGAACCGG--AACAAAATGACAATATGCGCANATC--CTAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-GGAA-------CACGAAGACAATATGCGCAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAAC--CT-GA-GTTGTAGAGAAATAGCGCGGACAAGAATTTGGTCA-----CAGACAGAATCAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACGGAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGNAGAGAAATAGCCCGGACAAGGATT----TGG----T-C--ACGGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TATATGCTTCCC-----C-------CC-TTC--GGGG-AGCATAAA
gi|1 : TGGTAATGGGCAGAATCAAAGGGCCACAACT---TTGTAAAAAAATCATATAAATAAAACACAAAGACAATACACACACTCTCCACTTGGTAATGATGCTTCCTGGCAAGCTTCATAAAATTCCAGCTACTAGAATGAGAAATGATTTGGTAATGTATGCAATCTAAGGGCCACAACTCTGAAAAACATCATCAAATGTAAACACTAAGAAAGTATGCATATCTCCACTTGGTAATGATACAACATAGCTAGTTTCATACAATTCCTATCAATGGTTCTAGAGAAATAGCCTGGACAAGAATTTAAGGACGGACGGACAAACGCGGCTATCTATGACAA-----GCATG--TAA-AA--------------CAAGTT--------------TCACAA-AATTCCAACCTAAGGTTGTAGAGAAATAGCGTGGACAATAATTTGGTCATAGACTCAATGAAAGG--GCCATAATTCTGTGCAAAAATCACCAAACCGG--AACACAAAGACAATATGCGCATCTCCACTTGGTAG--TGATGC------------ATCCNNNNNNNNNN-GGAA-------CACAAAGACAATATGCGCAT-CTCCAC-TTGGTAGTGATGCATCCTAG--CAAGTTTCATAAAATTCCAAT--ATGGG-GTTGAAGAGTAATAGTGCAGGCAAGAATTTGGTCA-----CTGACAGAATCAAAGGGCTATAACTCAGTGGAAAATCATGGAACTAGAACACAAAGATAATATGTGCATCTCAATTTGGTAGTGATGCATCCTAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGCAGACAAGAATTTGG---T-CATCGACTGAATCAAAG-GGCCATTACTCCGTGAAAAATCATCAAACCGGAACACAAAGACAATATGCGCAT-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCTAAGGTTGTAGAGAAATTACCTGGACAATAATT----TGG----T-C--ACAGACGCACGG----ACGGAC----GA-AG---CGGCGAC-------TTTATGCTTCCC-----C-------TCGTTG--GGGG-AGCATAAA
gi|10 : caatgatgtg--ATGGATGCACGG----ACAGAC----AA-AGCTACAGCTACATAAATTTATATGCTT--G-----C-------CC-TTT--GGGG-AGCCTAAA
gi|11 : gttatgttccgcaaacaaatcttgGTCCAGACAAGGATTCATTTGGA---TGC--ATGTATGCACAG----ACGGAC----AA-TG---TGTTAGT-------TATATGCT--CA-----A-------CC-TTC--AGAG-AGCATAAaataga
gi|12 : ttGAAAATTAATACGGACAAGAATT----TTG----T-G--ACGGACGGACGA----ACATTC----G-----------GAC-------TATATGCTTTCC-----CATTT---CC-TTTTAGCGA-AGCATAAAtaaggt
gi|13 : AAATCAATGAACAGA--AACAAAATGACAATAAGTGCAGATC--CTAGCTAG--TTTAACGG--AATTAA-AACCAGAGGTa
gi|13 : TAGCTAGTTTAACGGAATTAAAACCAGAG---GTAGCGAAATAGCagcgaaatagc
gi|14 : aaatcaatgaacagaaacaaaatgacaataagtgcagatccGACGAACAG----ACGGAC----AA-AG---GGGCAGC-------TATATGC--GCA-----C-------CC-TTT--TGGG-AGCA-AAA
gi|15 : ATGACACTACGTGCATA--TCCTAG--------------CTAGTT--------------TTACAA-AATTAAAACCAAATGTTGTAGCGAAATAGCtaagattaagttgcagcttgtaaa
gi|16 : ttaaactaaaAAATCATTGAACCGG--ATCAAAATGTAAATATGCACAG-----------AG--TTTTACCA--AATTTA-AACCAGAGGTTGTGG-
gi|17 : cgcATGAAAGGATGGCATAAATCC-TGAAAATATTATCAGATCAGAAAACAAAA--AAAATATGTGCATCTC--C
gi|18 : G--AACAAAATGACTATATGTGGATATT--ATAGCTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAG-CGAA-------aact
gi|19 : GAGGTTAAAGAGAAATAGCCTGGACAAAAACT----TGGGGACG-C--ACACACGCACAG----ACAGAC----GA-AG---CAGCGAC-------ata
gi|2 : AAATCATTTAACCGG--AACAAAATGACAATATACGCAGATC--CTAGCTAG--TTTTACAG--AATTAT-AACCAGAGGTTGTAG-GGAAATAGCGTCATGGCGACAATATGCACAT-CTCCAC-TTGGTAATGATGCATCCTAG--CAAGTTTCATAAAATTCCAACATTT-GA--TTGTAGAGAAAAAGCATGGACAAGAATTTGGTCT-----CAAATAGAATCAAAGGCCCATAACTCCGTCAAAAATCATCGAACCGGAACAGAAAGACAGTATACGTATTTGCACTTGATAATGATGCATCCTAGTAAGTTTCATGAAATTCCAACCTGAAGTTGTAGAGAAATAGCCCGGACAATAATTTGG---T-CACAAATAGGATCAGAG-GGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCAT-CTGCAT-TTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATT----TGG----T-C--ACAAAC
gi|2 : c-GGAA-------CAGAAAGACAGTATACGTAT-TTGCAC-TTGATAATGATGCATCCTAG--TAAGTTTCATGAAATTCCAAC--CT-GAAGTTGTAGAGAAATAGCCCGGACAATAATTTGGTCA-----CAAATAGGATCAGAGGGCCATAACTCCATGAAAAATCATTGAACCGGAATACAAAGACAGTATGCGCATCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAATTCCAACTTCAGGTTGTAGAGAAATAGCGCGGACAAGAATTTGG---T-CACAAACATAATCAAAG-GGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAAGACAATATGCGCAG-CTGCAC-TTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgacggacggacggacggacgtt
gi|2 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaacc--ACGGACGGACGG----ACGGAC----Gatgacacatggactgacggacggacggacggacgtt
gi|20 : caaatcatttaaccggaacaaaatgacaatatacgcagatcctagctagttttacagaattataaccagaggttgtagggaaatagcgtcatggcgacaatatgcacatctccacttggtaatgatgcatcctagcaagtttcataaaattccaacatttgattgtagagaaaaagcatggacaagaatttggtctcaaatagaatcaaaggcccataactccgtcaaaaatcatcgaaccggaacagaaagacagtatacgtatttgcacttgataatgatgcatcctagtaagtttcatgaaattccaacctgaagttgtagagaaatagcccggacaataatttggtcacaaataggatcagagggccataactccatgaaaaatcattgaaccggaatacaaagacagtatgcgcatctgcatttggtaatgatgcatcctagtaagtttcataaaattccaacttcaggttgtagagaaatagcgcggacaagaatttggtcacaaacataatcaaagggccataactccgtgaaaaatcatcgaaccggaacacaaagacaatatgcgcagctgcacttggtaatgatgcatcctagcaagtttcataaaattcatgacacatggactgAGAGGTTATAGAGCAATAGTCCGAACAAGGATT----TGG-----------GGACACACGG----ATAGAT----TA-AG---tt
gi|22 : GTTGAAGAGAAATAGCCCGGACAATAATTAG--TGG----T-CGAATCGATGCACGC----ATGGAC----GA-gtttctatgct
gi|23 : CGC----ACAGAC----AA-AG---CGGTGAC-------TATATGCTTCCT-----CGATTTT-TT-TTC--AGAA-AGCATAA
gi|24 : gAGAAATTGTAGGCAAATAGCCCTGACAAGAACTTGGGGATGTACAGATGGAc
gi|25 : CCAGAGGTTGTAGAGAAATAGCCTGAACAAGAACTTGGGG-CAGACGGACG
gi|26 : --AACAAAATGACAATATGAGCAGATC--CTAGCTAG--TTTTACAA--AATTAA-A
gi|27 : t-C--ACGAACGCACGC----ACGGAC----AA-AG---CGGCGAC-------TATATGCTT
gi|28 : gggacgcacg----ACGGAC----GA-AG---CGGAGAC-------TATATGCTTCCC-----C-------CT-TTT--GGGG-AGCATAAA
gi|29 : GGGGAC-------TATAATCTTCCC-----C-------CC-TTT--GGGGAAGCATAAa
gi|3 : gacaaaaactaCAAAATGACAATATGCATATATC--TTAGCTAG--TTTTACAA--AATTGA-AACCAGAGGTTGTAG-TGAAACAGCATCATGAAGACAATATGCACAT-CTCCAC-TTGGTAATGATTCATCCTAG--CAAGTTTCATAGAATTCCAAC--CT-GAGGTTGTAGAGAAATAGC-CGGACAAGAATTTGGTCA-----TAGACAGAATCAAAGGGCCATAACTCTGTGAAAAATCATTGAACCGGAGCACAAAGAAAATATGTGTTTCTGCATTTGGTAATGATGCATCCTAGTAAGTTTCATAAAACTCCAACCAGAGGTTTTAGAGAAATATTCCAGACAAGAACTTGGGGATGCACATACGGA--CAAAGTGGCt
gi|31 : ACGCACGG----ACGGAT----GA-AG---CGGTGAC-------TATAT----------------------------GGGG-AGCATAAAgactatatgcttcccccctttaggggagcataaaa
gi|32 : TGGTAATGGAAAGAATCAAAGGGCCATAACTAAATTGTGAAaa
gi|33 : ttAACACAAAGACAATTTGTACAT-CTCCAT-TTGGTA
gi|34 : CGAC-------TATATGCTTCCC-----C-------AC-TT-----GG-AGCATAAAg
gi|4 : AAATCATTCAACCGG--AACAAAATGACAATATGCGCGTTTC--CTAGTTAG--TTTTACAA--AATTAA-AACCAGAGGTTGTAGCGCAA-------TATGAAGACAATATGCTCAT-CTCCAC-TTGGTAATGAGGCATCCTAG--CAAGCTTCATAAAATTCCAAC--CA-GACGTTGTAGAGAAATAGAGCAGAGAAGAATTT--T---------GACAGAATGAAAGGGCCATAACTCCGTGAAAAATCATCGAACCGGAACACAAaa
gi|5 : cAAATCATCTGACCAGAACACTGTGACAATATGCGCATACTTCATGTTGGTA
gi|5 : GAA-------CACTGTGACAATATGCGCATACTTCATGTTGGTACTA--------TAGAACAATTTTC-------TCCAA-------A-ATTGTCAAGAAATG--------AAAAATCTGAACAATAAGCAGACAGActatagaacaattttctccaaaattgtcaagaaatgaaaaatctgaacaataagcagacagacaagcacaatgatatgctcctttacttagttcagacattg
gi|6 : aaatcatctgaccaTGCGT-ATGGTGTTGATGTATCCTAGCAAGTTTC-TA---TT------AGCACTTGAGGAGCAGTAACGTGAAAAAGGATT----TAG----T-T--TAGGACGCACGAACGCACGGAC----AA-AA---CAGTGAG-------TAT-TGCTTCTCTGAAAT-------CA-TTC--GGGcaagcacaatgatatgctcctttacttagttcagacattg
gi|7 : agtcaacaGACAAGGATT----TGG-----------GGATGCACAG----ACAGACACATGC-AT---CAATGAC-------TATATACTACCCAA---A-------AT-TTT--GGGA-AGCATAAAa
gi|8 : AATCATTGAACCGT--AACAAAATGACAATATGCATAGACC--CTAGCTAGTTTTTTACAACTATTTAACAACaattaccaatttgaaaatggaagtaaagttaaagccccataaatg
gi|8 : ATGACAATA--TGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATAGCGaattattattacaacaattataaccagaggttgtagcaaaatagcg
gi|9 : aatcattgaaccgtaacaaaAAATTCCAACCAGACACTGTAGAGAAATAGTACAGACTAGGATT----TGA----T-A--AAGGAAGCACTG----ACG--C----CATAG---CAGAAAC-------TACATGCTTCCC-----CAAATTTTTT-TTC--AGCA-AGCATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GTTGAAGAATACCAAACTGTTAAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
Unaligned ( gi|30 ): AAAAATTGGTGACACACGGACGGACGCACGCACGGACGGATGTTCT