lowQualScore : 2222222222222222222222222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222222222222222222222222222222222222222222222222222222222222222222222 1111111
lowQualScore : 1 222 222 1 11 1 4444444444444444444444444444 1 1 11 1 1 22222222 1111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 55555555555555555555555555555 2222222222222 33333333333 2 33333333333 222 11 1 1 1 1111 1111 222222222222222222222222222222222222222222222222222222222222222222222 1 11 222 1 3333333 11 22222 111 111 1 111 11 11 11 1 1
lowQualScore : 5 111 222 5 22 7 1111111111111111111111111111 0 4 2 2 5 2 99 2 5 6 0 88 99999999 4444 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 9 22222222222222222222222222222 8 4 6666666666666 66666666666 0 3 99999999999 7 3 4 000 8 2 66 0 0 0 4444 9 2 4 3 6 666 88 3 7777 7777 77 0 6 7 999999999999999999999999999999999999999999999999999999999999999999999 3 0 88 6 111 66 3 0000000 11 6 2 0 0 5 5 7 00 5 1 22222 111 6 555 0 22 88 1 3 0 2 0 3 3 2 444 777 11 11 8 0 11 55 1 1 2 5 6
lowQualScore : . ... ... . .. . ............................ . . . . . . .. . . . . .. ........ .... ............................................................................................................................................ . . ............................. . . ............. ........... . . ........... . . . ... . . .. . . . .... . . . . . ... .. . .... .... .. . . . ..................................................................... . . .. . ... .. . ....... .. . . . . . . . .. . . ..... ... . ... . .. .. . . . . . . . . ... ... .. .. . . .. .. . . . . .
lowQualScore : 0 000 000 0 00 0 0000000000000000000000000000 5 0 5 5 0 5 00 5 0 0 5 55 55555555 5555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 0 88888888888888888888888888888 0 0 0000000000000 00000000000 0 0 00000000000 8 0 0 555 8 5 55 0 5 0 5555 5 0 2 2 6 666 88 2 0000 0000 77 7 7 7 333333333333333333333333333333333333333333333333333333333333333333333 3 7 33 7 333 77 3 0000000 00 0 1 1 4 7 7 9 99 7 4 11111 777 7 000 7 22 55 7 8 6 8 0 2 2 5 555 555 00 00 0 8 00 44 4 4 0 0 0
consensus : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGTGGGGGTAT---ATACNTATGTNAACAGGNACGCGTCCAGCGTNGTNGATTGCNTCTTGTTGAAGGAANGNGGTTTCACNGTTAGTGAATGNTTTTCACATCGACGNANNTCAGTTTACAGAATTCAAGCGATCACGCGNCGCTNTCAACANTNNTAATTT---------A--A-CGTCC-A-AT-T-AT--TGACA---A-CATTACCCA-AA---TGCACGTGAANCTACTTAAAATGGGACAATGAANAT-ANANATNCT--TTT----CGTAACCGA-ATAATNGGCGAATTACCGCANTTCAATGGTTTTTTAGATACTG-----T-----CGAGTAANAATNATCCGTTA-AGTATNAATAATCTTATTGTANAATTTNCGAATNCTATACGCGAAGTGGCCGATCC-NCTT-TTTAAAAAGAA-ACACA-AT-GTGTCGAGACCAAANTATAATATTCANAATANTGAT----ACAAAGCGGTGGTTTGATANNGAATGTATTCAAGCTAAAANGCGGTAT------------------------AAAGAAG--TNATAC------------------------GCG---AACA-GAACGT--TACTTGCCGATT-ACAAAATTGCTTATAA-AAACTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAAACAAATGAAAGAGTTGGAAA-GTATGCG-TTTTTCAAGACCACGCGATTTTTGGAGACGTT-TTATC-----AAAAG---AA-AACAAACTACCCCAGATATNTC-NTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTAGATAGACGTATAAGTGTCCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( gi|1 ) : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTAATGGC----TCCCATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAAAATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA---TTTACAATTT---------A--A-TGTCC-G-AT-TGGTCTTGACAGAGAACATTGCCCA-AAGTTTGCA---GAAAGTACT--AAATGGGAAAATGAACAT-ATAGATGCC--TTT----CGCAGATGA-ATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----T-----CGA-TAAAAATAGTCCTTTA-AGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-ATACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGAGTGTATTCAAGCTAAAAAGCGGTAT------------------------AGCGAAG--TTATAT------------------------GTG---AACA-GAACGT--TACTTGCTGAAT-ACAGGATTGCTTATAA-AAACTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAAACAAATGAAAGAGTTGGAAA-GTATGCG-TTTTTCCAGACCACGTGATTTTTGGAGACGTT-TTATC-----AAAAG---AA-AACAAACTCCCCCAGACATTTC-TTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCTCCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGTGGGGGTAT---ATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTT-----TTTA-GTAGGTCAGTTTACAGAATTTA-GCGATCATGCACCGCTA--A---TTTTTATTATAAAGGGGAAA--A-TGTCC-A-A-----TATTGATA-ATA--ATT--CGATAAAT---CAT--GAATTTATT--AAATGG---AATGACGATGACAGACACTTGTTT----CGTAACTGA-GTAATTGGC
gi|5 : ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACATCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTT---------ATAA-CGTA--A-ATATAATCGT---------TATTACCCA-AA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAT-AAACTTTTA--TTT----CGTA-ACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACT-----CGAGTAACAA-------TTATAGTATAAATAGCCTTACCGTACAATTTTCAAATTC-ATACGCAAA--AACTGATCCTTCTT-TTTAAAA-AAA-ACACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgctttaccaagt
gi|3 : aaagatcatggctttggaggaataATTT---------A--AATGTCCCGCAT-TTAT---GACAGTGAACACTGC----------GC----GAATGTACT--AATTGGGAATACGGACGT-TTATATTCC--TTT----CTCGG-TGA-AAAACAGGCGAACTAC------TGA-------TTTAAATACTG-----T-----GGA-TAAAAATTATCCGTTA-AGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-ATACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGAATGTATTCAAGCTAAAACGCGGCATAAAGAAGCATTATAAACTTTATCAAACGAAG--TCAGAT------------------------GAG---AACA-GAATCC--TACTAGCC-AATAACAAAATTGTTGATAACAAAATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAAAAAAATGAAATAATAGGAAA-GAATGCG-TTATTCAAGATTACGTGGTGTTTGAAAGCGTT-TTATT-----AA
gi|9 : tataacttttATTACCCA-AA---TGTACGTGAAAC--CTTAAAATGGGACAATGAA----A-AGAAACT--TTTTTTCCGTAACAAA-ATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATG-----TAGACTCGAATAACAATGAT-------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACACACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAA
gi|2 : A-ATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----T-----CGA-TAAAAATAGTCCGTTA-AGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-ATACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGAGTGTATTCAAGCTAAAAAGCGGTAT------------------------AAAGAAGCATTATATAATTTTAATCTAAATAAGTCAGATGTG---AACA-GAACGT--TAATTGCTGATA-ACAAGATTGCTTATAA-AAACTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAAACAAATGAAAGAGTTGGAAA-GTATGCG-TTTTTCCAGACCACGTGATTTTTGGAGACGTT-TTATC-----AAAAG---AA-AACAAACTCCCCAAGACATTTC-CTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGACCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|16 : AGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----gaagg
gi|4 : AAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGAATGCAATCACG-TAAAATACAATGT------------------------AGATAGG--TAATAC------------------------GCGTAAAACATGCATGTGTTACTTGCTGATT-ACAAAATTGCTTATAA-AAACTTATTGAAAA-------------A--AATGTGCTTATAAATACAAACAAATAAAAGAGTTAGAAAAGTATGCG-TTTTTCCAGACCACGTGATTTTTGGAGACGTT-TTATC-----AAAAT---AA-AACAAACTTCCCCAGACATTTC-TTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGTCCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|6 : aaaaaaacgtacaatagggttaatataAAAAAAC--GACGTGCATACAAATTTAAACAAATGAAAGATATGGAAA-ACATGTG-CAAATCGAAACCAAGCGATTTTTGGAA--GTTATTCTCGA---AAAAC---AG-AACAAGC-AACTCAAATATCAA-AATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAAgaaggtcgctggagataata
gi|11 : tataaagatgcgttattcagttttaatagaaataaaacacacgttaatagaatagaactggctgaccgtaaatatatcattattaatgtcttgtcaagAAAAAAA--AGCGCAAGTATAAAAATGA-CGAATGAAAGAATTGGAAA-ATATGCGACTTTT--AAAACACCTGTTTTTTGGAAACGCT-TT-TCTTCCAAAAAGCATAA-AACA-------CCTGGTAATTC-GTTAGATGActatatcggaggtggagacagttataagatccctaggcaaaaataagg
gi|7 : tGCTTATAAATACAAACAAATGAAAGAGTTGGAAA-GTATACG-TTTTTCAAGACCACGTGATTTTTGGAGAAGTT-TTATC-----AAAAG---AA-AACAAACTACCCCAGATATGCC-TTGAGATGATTTTAATACATATTTGGTAATTCT-T--CAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTTCCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAA
gi|10 : TCATAAAATCAAGCAAATTAAAGAACTATAAA-ATTTAAG-ATTCTCAAAACCGTGCGAATTTTGGAAAATGT-TCA-C-----AAAGG---AAGAGCAAAGTAACTCTGATATACCATTCAAA-GACTTCCATGCATATTgaaggtcactggagataatatgcttaatgaaca
gi|13 : --GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGT
gi|12 : aaCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAAg
gi|14 : cttataaatgatacttttatGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAAgaaggtcgctggagataatatgctt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAGATAATGGAGTTGGAAGCATAACGTATGTAAATAGGCATGGTTGCCCATTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 22222 22222222222 22 222222222 55555 1 11 222222 666666666666 4444444444444444444 111 1111 22 111 1 11 33333 2 111111 1 1 1111 1111111111111111111111111111111111111111111111111111111111111111111111 11 2222222 111
lowQualScore : 3 2 2 2 4 2 4 44 33 77777 66666666666 1 1 1 6 0 0 11 1 222 0 0 0 0 1 1 0 44 1 6 11 999999999 1 22 11111 2 44 7 77 1 0 777777 1 22 222222222222 0 6 2222222222222222222 0 777 66 5555 55 3 1 1 22 777 444 0 1 1 2 3 3 3 00 33333 3 1 1 666666 1 1 1 1 1 0 99 8 3 6 99 6 3 1 11 1 4 0 22 1 4444 2 0 22 2 1 0000000000000000000000000000000000000000000000000000000000000000000000 8 11 1 2 4 8 8 8 8 5 1111111 99 33 66 5 1 2 66 5 66 5 333 1 1 1 88 0 1 444 99 99 6 99 1 8
lowQualScore : . . . . . . . .. .. ..... ........... . . . . . . .. . ... . . . . . . . .. . . .. ......... . .. ..... . .. . .. . . ...... . .. ............ . . ................... . ... .. .... .. . . . .. ... ... . . . . . . . .. ..... . . . ...... . . . . . . .. . . . .. . . . .. . . . .. . .... . . .. . . ...................................................................... . .. . . . . . . . . ....... .. .. .. . . . .. . .. . ... . . . .. . . ... .. .. . .. . .
lowQualScore : 0 5 5 5 0 5 0 00 55 22222 22222222222 0 0 0 7 7 7 77 0 333 7 7 7 7 0 0 7 33 0 7 77 000000000 0 00 33333 3 77 3 33 0 7 777777 0 00 777777777777 7 7 0000000000000000000 8 555 88 4444 88 2 0 0 44 666 000 8 4 0 7 7 3 2 00 33333 2 0 0 888888 0 0 0 0 2 6 00 0 7 7 22 7 3 0 00 0 0 3 77 0 2222 5 2 00 5 0 8888888888888888888888888888888888888888888888888888888888888888888888 0 00 0 8 4 0 0 0 0 0 7777777 22 11 99 0 9 0 99 0 99 7 777 0 0 7 88 8 0 000 22 22 7 22 0 0
consensus : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-A-G-TGGAGGNAT---ATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNANATCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCA--ATTTATAATT--T---------AACGTCCAA-TA---TTGACG----AT-ATTACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTC---GTAACNGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCGA-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGAGTGTATTCAAGCTAAAANGCGGTA--------------------------TAAATAAG--TCAT------------ACG----C------G---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( family-1621 ) : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-A-G-TGGGGGTAT---ATACNTATGTNAACAGGNACGCGTCCAGCGTNGTNGATTGCNTCTTGTTGAAGGAANGNGGTTTCACNGTTAGTGAATGNTTTTCACATCGACGNANNTCAGTTTACAGAATTCAAGCGATCACGCGNCGCTNTCAACANTNNTAATT--T---------AACGTCCAATTA---TTGACA----AC-ATTACCCAAA---TGCACGTGAANCTACTTAAAATGGGACAATGAANATANANATNCTTTTC---GTAACCGAATAATNGGCGAATTACCGCANTTCAATGGTTTTTTAGATACTG-----TCGAGTAANAATNATCCGTTAAGTATNAATAATCTTATTGTANAATTTNCGAATNCTATACGCGAAGTGGCCGATCC-NCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGACCAAANTATAATATTCANAATANTGAT----ACAAAGCGGTGGTTTGATANNGAATGTATTCAAGCTAAAANGCGGTA--------------------------TAAAGAAG--TNAT------------ACG----C------G---AACA-GAACGT--TACTTGCCGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCAAGACCACGCGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATNTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTAGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|1 : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTA-A-TGGC----TCCCATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAAAATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA---TTTACAATT--T---------AATGTCCGATTGGTCTTGACAGAGAAC-ATTGCCCAAAGTTTGCA---GAAAGTACT--AAATGGGAAAATGAACATATAGATGCCTTTC---GCAGATGAATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----TCGA-TAAAAATAGTCCTTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGAGTGTATTCAAGCTAAAAAGCGGTA--------------------------TAGCGAAG--TTAT------------ATG----T------G---AACA-GAACGT--TACTTGCTGAATACAGG-AT-TGCTTATAA-AAA-CTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCCAGACATTTCTTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCT-CCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|10 : TCATAAAATCAA--GCAAATTAAAGAACTATAAA-ATTTAAGATTCTCAAAACCGTGCGAATTTTGGAAAAT--GT-TCA-C--AAAGGAAGAGCAAAGTAACTCTGATATACCATTCAAAGACTTCCATGCATATT
gi|11 : -------AAAAAAA--AGCGCAAGTATAAA---AATGACGAATGAAAGAATTGGAAA-ATATGCGACTTTTAAAA-CACCTGTTTTTTGGAAACGCTTT-TCTTC--CAAAAAG-CATAAA--ACACCTGGTAATTCGTTAGATGA
gi|12 : tCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|13 : cttataaatgatacttttat--GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGTGgaaggtcgctggagataatatgctt
gi|14 : aaGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|15 : GATAATGG-A-GTTGGAAGCAT---A-ACGTATGTAAATAGGCATGgaaggtcgctggagataatatgc
gi|16 : aaGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----gttgcccattg
gi|2 : aAATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----TCGA-TAAAAATAGTCCGTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGAGTGTATTCAAGCTAAAAAGCGGTATAAAGAAGCATTATATAATTTTAATCTAAATAAG--TCAG------------ATG----T------G---AACA-GAACGT--TAATTGCTGATAACAAG-AT-TGCTTATAA-AAA-CTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCAAGACATTTCCTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGA-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|3 : CGCGAATGTACT--AATTGGGAATACGGACGTTTATATTCCTTTCTCGGT----GAAAAACAGGCGAACTACTG-------AT------TTAAATACTG-----TGGA-TAAAAATTATCCGTTAAGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-AT--ACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGAATGTATTCAAGCTAAAACGCGGCA--------------------------TAAAGAAGCATTATAAACTTTATCAAACGAAGTCAGATGAG---AACA-GAATCC--TACTAGCCAATAACAAA-AT-TGTTGATAACAAA-ATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAA--AAAAATGAAATAATAGGAAA-GAATGCGTTATTCAAGATTACGTGGTGTTTGAAAGCG--TT-TTATT--AAgaagg
gi|4 : tataacttttatttaaatgtcccgcatttatgacagtgaacactgAAAAAA-ACGTACA-ATAGGGTTAATATAAAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGAATGCAATCACG-TAAAATACAATG--------------------------TAGATAGG--TAAT------------ACG----C------GTAAAACATGCATGTGTTACTTGCTGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAA--------TGTGCTTATAAATACAA--ACAAATAAAAGAGTTAGAAAAGTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAATAA-AACAAACTTCCCCAGACATTTCTTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGT-CCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|5 : GATCATGG-CTT-TGGAGGAAT---A-ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACATCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTTAT---------AACGT--AAATA---TAATCG----TT-ATTACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAATAAACTTTTATTTC---GTAACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACTCGAGTAACAATTAT------AGTATAAATAGCCTTACCGTACAATTTTCAAATTC-ATACGCAAA--AACTGATCCTTCTT-TTTAAAAA-AA-AC--ACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgaaggtcgctggagataata
gi|6 : aaaTA--------------------------GAAATAAA--ACAC------------ACG----T------T---AATA-GAATAG--AACTGGCTGACCGTAAATATATCATTATTA-ATGTCTTGTC--AAG-------AAAAAAC--GACGTGCATACAAATTTAA--ACAAATGAAAGATATGGAAA-ACATGTGCAAATCGAAACCAAGCGATTTTTGGAA--G--TTATTCTCGAAAAACAG-AACAAGC-AACTCAAATATCAAAATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAACTATATCG-GAGGTGGAG
gi|7 : tataaagatgcgttattcagttttaaGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATACGTTTTTCAAGACCACGTGATTTTTGGAGAAG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATGCCTTGAGATGATTTTAATACATATTTGGTAATTC---TTCAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTT-CCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAAacagttataagatccctaggcaaaaataagg
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-A-G-TGGGGGTAT---ATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTTTT-TA-----GTAGGTCAGTTTACAGAATTT-AGCGATCATGCACCGCTA-----ATTTTTATTA--TAAAGGGGAAAATGTCCAA-TA---TTGATA----ATAATTCGATAAA---T---CATGAATTTATT--AAATGGAATGACGATGACAGACACTTGTTTC---GTAACTGAGTAATTGGCGCTTTACCgaaggtcactggagataatatgcttaatgaaca
gi|9 : -ATTACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAGAAACTTTTTTTCC---GTAACAAAATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATGTAGACTCGAATAACAATGAT------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACAC--ACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAAaagt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 2 1 1 111111111 33333 1 11 22222222 444444444444 222222222222222222 11 11111 1111 22 33333 111111 11 1 1111 222222222222222222222222222222222222222222222222222222222 111 11 2222222 111
lowQualScore : 1 1 1 1 1 1 1 66 33 0 0 0 11 44 5 0 1 0 3 3 3 6 888888888 33333 2 44 7 77 22222222 4 4 444444444444 2 33 555555555555555555 11 0 44444 3333 55 77 1 1 1 1 1 1 2 3 2 3 7 33333 8 8 0 1 666666 1 0 1 888 0 11 8 3 6 99 6 3 1 0 1 1 0 22 1 4444 2 0 1 8 8 3 44 555555555555555555555555555555555555555555555555555555555 3 4 444 8 11 1 1 8 8 8 8 5 1111111 99 33 66 5 1 66 5 66 5 333 0 1 1 8 0 0 1 444 99 99 6 99 1 8
lowQualScore : . . . . . . . .. .. . . . .. .. . . . . . . . . ......... ..... . .. . .. ........ . . ............ . .. .................. .. . ..... .... .. .. . . . . . . . . . . . ..... . . . . ...... . . . ... . .. . . . .. . . . . . . . .. . .... . . . . . . .. ......................................................... . . ... . .. . . . . . . . ....... .. .. .. . . .. . .. . ... . . . . . . . ... .. .. . .. . .
lowQualScore : 0 0 0 0 0 0 0 55 55 0 2 0 00 22 5 2 0 7 7 3 7 7 777777777 33333 0 77 3 33 00000000 0 0 888888888888 0 22 888888888888888888 00 8 88888 6666 88 88 0 0 4 0 0 0 7 7 5 2 8 33333 0 0 6 0 888888 0 6 4 444 6 22 0 7 7 22 7 3 0 3 0 0 3 77 0 2222 5 2 4 0 0 2 66 444444444444444444444444444444444444444444444444444444444 6 6 000 0 00 0 0 0 0 0 0 0 7777777 22 11 99 0 0 99 0 99 7 777 3 0 7 0 8 8 0 000 22 22 7 22 0 0
consensus : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGCATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-ATCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTTT---------A--ATGTCCAAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( family-1621 ) : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGT-GGAGGNATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNANATCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAT--TTATAATTT---------A--ACGTCCAAT----ATTGACG----AT-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACNGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCATACGCG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|1 : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTAAT-GGCTCC-CATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAAAATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA-T--TTACAATTT---------A--ATGTCCGATTGGTCTTGACAGAGAAC-ATT--GCCCAAAGTTTGCA---GAAAGTACT--AAATGGGAAAATGAACATATAGATGCCTTTCGCAGATGAATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCTTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTA--------------------------TAG---------CGAA---------------GTTATATGTG---AACA-GAACGT--TACTTGCTGAATACAGG-AT-TGCTTATAA-AAA-CTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCCAGACATTTCTTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCT-CCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|10 : TCATAAAATCAA--GCAAATTAAAGAACTATAAA-ATTTAAGATTCTCAAAACCGTGCGAATTTTGGAAAAT--GT-TCA-C--AAAGGAAGAGCAAAGTAACTCTGATATACCATTCAAAGACTTCCATGCATATT
gi|11 : -------AAAAAAA--AGCGCAAGTATAAA---AATGACGAATGAAAGAATTGGAAA-ATATGCGACTTTTAAAAC-ACCTGTTTTTTGGAAACGCTTT-TCTTC--CAAAAAG-CATAAA--ACACCTGGTAATTCGTTAGATGA
gi|12 : tCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|13 : cttataaatgatacttttat--GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGTGgaaggtcgctggagataatatgctt
gi|14 : aaGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|15 : GATAATGG-AGTTGGAAGCATA-ACGTATGTAAATAGGCATGGgaaggtcgctggagataatatgc
gi|16 : aaGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----ttgcccattg
gi|2 : aAATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCGTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTATAAAGAAGCATTATATAATTTTAATCTAA---------ATAA---------------GTCAGATGTG---AACA-GAACGT--TAATTGCTGATAACAAG-AT-TGCTTATAA-AAA-CTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCAAGACATTTCCTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGA-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|3 : TAT-AAC--TTTTATTTA---------A--ATGTCCCGC----ATTTATG----AC-AGTGAACAC--------TGCGCGAATGTACT--AATTGGGAATACGGACGTTTATATTCCTTTC-TCGGTGAAAAACAGGCGAACTACTG---------A----TTTAAATACTG-----TGG-A-TAAAAATTATCCGTTAAGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-AT--ACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGA-ATGT-ATTCAAGCTAAAACGCGGCA--------------------------TAAAGAAGCATTATAAACTTTATCAAACGAAGTCAGATGAG---AACA-GAATCC--TACTAGCCAATAACAAA-AT-TGTTGATAACAAA-ATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAA--AAAAATGAAATAATAGGAAA-GAATGCGTTATTCAAGATTACGTGGTGTTTGAAAGCG--TT-TTATT--AAgaagg
gi|4 : AAAAAA-ACGTACA-ATAGGGTTAATATAAAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGA-ATGC-AATCACG-TAAAATACAATG--------------------------TAG---------ATAG---------------GTAATACGCGTAAAACATGCATGTGTTACTTGCTGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAA--------TGTGCTTATAAATACAA--ACAAATAAAAGAGTTAGAAAAGTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAATAA-AACAAACTTCCCCAGACATTTCTTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGT-CCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|5 : GATCATGG-CTTTGGAGGAATA-ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACATCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTT---------ATAACGTA-AAT----ATAATCG----TT-ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAATAAACTTTTATTTCGTAACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACTCG-AGTAACAATTAT------AGTATAAATAGCCTTACCGTACAATTTTCAAAT-TCATACGCAAA--AACTGATCCTTCTT-TTTAAAAA-AA-AC--ACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgaaggtcgctggagataata
gi|6 : aaaATAAAGATGCGTTATTCAGTTTTAA------TA--------------------------GAA---------ATAA---------------AACACACGTT---AATA-GAATAG--AACTGGCTGACCGTAAATATATCATTATTA-ATGTCTTGTC--AAG-------AAAAAAC--GACGTGCATACAAATTTAA--ACAAATGAAAGATATGGAAA-ACATGTGCAAATCGAAACCAAGCGATTTTTGGAA--G--TTATTCTCGAAAAACAG-AACAAGC-AACTCAAATATCAAAATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAACTATATCG-GAGGTGGAG
gi|7 : tGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATACGTTTTTCAAGACCACGTGATTTTTGGAGAAG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATGCCTTGAGATGATTTTAATACATATTTGGTAATTCT-T--CAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTT-CCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAAacagttataagatccctaggcaaaaataagg
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGT-GGGGGTATATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTTTT---T--A-GTAGGTCAGTTTACAGAATTT-AGCGATCATGCACCGCT---AAT--TTTTATTATAAAGGGGAAA--ATGTCCAAT----ATTGATA----ATAATT--CGATAAA---T---CATGAATTTATT--AAATGGAATGACGATGACAGACACTTGTTTCGTAACTGAGTAATTGGCGCTTTACCgaaggtcactggagataatatgcttaatgaaca
gi|9 : -ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAGAAACTTTTTTTCCGTAACAAAATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATGTAGACTCGAA-TAACAATGAT------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACAC--ACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAAaagt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 111 1 1 3333333333 33333 1 11 22222222 555555555555 222222222222222222 11 11111 1111 22 33333 111111 11 1 1111 222222222222222222222222222222222222222222222222222222222 111 11 2222222 111
lowQualScore : 1 1 1 1 1 1 1 66 33 0 0 5 0 444 5 0 1 0 3 3 3 6 9999999999 33333 2 44 7 77 11111111 1 1 111111111111 2 0 555555555555555555 11 0 44444 3333 55 77 1 1 1 1 1 1 2 3 6 3 3 33333 8 8 0 1 666666 1 0 1 888 0 11 8 3 6 99 6 3 1 0 1 1 0 22 1 4444 2 0 1 8 8 3 44 555555555555555555555555555555555555555555555555555555555 1 444 8 11 1 1 8 8 8 8 5 1111111 99 33 66 5 1 66 5 66 5 333 0 1 1 8 0 0 1 444 99 99 6 99 1 8
lowQualScore : . . . . . . . .. .. . . . . ... . . . . . . . . .......... ..... . .. . .. ........ . . ............ . . .................. .. . ..... .... .. .. . . . . . . . . . . . ..... . . . . ...... . . . ... . .. . . . .. . . . . . . . .. . .... . . . . . . .. ......................................................... . ... . .. . . . . . . . ....... .. .. .. . . .. . .. . ... . . . . . . . ... .. .. . .. . .
lowQualScore : 0 0 0 0 0 0 0 55 55 0 2 5 8 000 5 2 0 7 7 3 7 7 7777777777 33333 0 77 3 33 55555555 0 0 222222222222 5 8 222222222222222222 00 8 88888 6666 88 88 0 0 4 0 4 0 7 7 7 2 7 33333 0 0 6 0 888888 0 6 4 444 6 22 0 7 7 22 7 3 0 3 0 0 3 77 0 2222 5 2 4 0 0 2 66 444444444444444444444444444444444444444444444444444444444 0 000 0 00 0 0 0 0 0 0 0 7777777 22 11 99 0 0 99 0 99 7 777 3 0 7 0 8 8 0 000 22 22 7 22 0 0
consensus : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( family-1621 ) : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCAAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|1 : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTAAT----GGCTCCCATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAA-AATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA-T--TTACAATT--T---------AATGTCCGATTGGTCTTGACAGAGAAC-ATT--GCCCAAAGTTTGCA---GAAAGTACT--AAATGGGAAAATGAACATATAGATGCCTTTCGCAGATGAATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCTTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTA--------------------------TAG---------CGAA---------------GTTATATGTG---AACA-GAACGT--TACTTGCTGAATACAGG-AT-TGCTTATAA-AAA-CTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCCAGACATTTCTTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCT-CCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|10 : TCATAAAATCAA--GCAAATTAAAGAACTATAAA-ATTTAAGATTCTCAAAACCGTGCGAATTTTGGAAAAT--GT-TCA-C--AAAGGAAGAGCAAAGTAACTCTGATATACCATTCAAAGACTTCCATGCATATT
gi|11 : -------AAAAAAA--AGCGCAAGTATAAA---AATGACGAATGAAAGAATTGGAAA-ATATGCGACTTTTAAAAC-ACCTGTTTTTTGGAAACGCTTT-TCTTC--CAAAAAG-CATAAA--ACACCTGGTAATTCGTTAGATGA
gi|12 : tCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|13 : cttataaatgatacttttat--GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGTGgaaggtcgctggagataatatgctt
gi|14 : aaGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|15 : GATAATGG-AGTTGGAAGC--ATA-ACGTATGTAAATAGGCATGGgaaggtcgctggagataatatgc
gi|16 : aaGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----ttgcccattg
gi|2 : aAATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCGTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTATAAAGAAGCATTATATAATTTTAATCTAA---------ATAA---------------GTCAGATGTG---AACA-GAACGT--TAATTGCTGATAACAAG-AT-TGCTTATAA-AAA-CTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCAAGACATTTCCTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGA-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|3 : TAT-AAC--TTTTATTT--A---------AATGTCCCGC----ATTTATG----AC-AGTGAACAC--------TGCGCGAATGTACT--AATTGGGAATACGGACGTTTATATTCCTTTC-TCGGTGAAAAACAGGCGAACTACTG-A------------TTTAAATACTG-----TGG-A-TAAAAATTATCCGTTAAGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-AT--ACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGA-ATGT-ATTCAAGCTAAAACGCGGCA--------------------------TAAAGAAGCATTATAAACTTTATCAAACGAAGTCAGATGAG---AACA-GAATCC--TACTAGCCAATAACAAA-AT-TGTTGATAACAAA-ATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAA--AAAAATGAAATAATAGGAAA-GAATGCGTTATTCAAGATTACGTGGTGTTTGAAAGCG--TT-TTATT--AAgaagg
gi|4 : AAAAAA-ACGTACA-ATAGGGTTAATATAAAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGA-ATGC-AATCACG-TAAAATACAATG--------------------------TAG---------ATAG---------------GTAATACGCGTAAAACATGCATGTGTTACTTGCTGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAA--------TGTGCTTATAAATACAA--ACAAATAAAAGAGTTAGAAAAGTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAATAA-AACAAACTTCCCCAGACATTTCTTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGT-CCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|5 : GATCATGG-CTTTGGAGGA--ATA-ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACA-TCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTTAT---------AACGT-AAAT----ATAATCG----TT-ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAATAAACTTTTATTTCGTAACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACTCG-AGTAACAATTAT------AGTATAAATAGCCTTACCGTACAATTTTCAAAT-TCATACGCAAA--AACTGATCCTTCTT-TTTAAAAA-AA-AC--ACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgaaggtcgctggagataata
gi|6 : aaaATAAAGATGCGTTATTCAGTTTTAA------TA--------------------------GAA---------ATAA---------------AACACACGTT---AATA-GAATAG--AACTGGCTGACCGTAAATATATCATTATTA-ATGTCTTGTC--AAG-------AAAAAAC--GACGTGCATACAAATTTAA--ACAAATGAAAGATATGGAAA-ACATGTGCAAATCGAAACCAAGCGATTTTTGGAA--G--TTATTCTCGAAAAACAG-AACAAGC-AACTCAAATATCAAAATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAACTATATCG-GAGGTGGAG
gi|7 : tGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATACGTTTTTCAAGACCACGTGATTTTTGGAGAAG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATGCCTTGAGATGATTTTAATACATATTTGGTAATTCT-T--CAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTT-CCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAAacagttataagatccctaggcaaaaataagg
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGT-GGGGGT--ATATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTTTT----T--A-GTAGGTCAGTTTACAGAATTT-AGCGATCATGCACCGCT---AAT--TTTTATTA--TAAAGGGGAAAATGTCCAAT----ATTGATA----ATAATT--CGATAAA---T---CATGAATTTATT--AAATGGAATGACGATGACAGACACTTGTTTCGTAACTGAGTAATTGGCGCTTTACCgaaggtcactggagataatatgcttaatgaaca
gi|9 : -ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAGAAACTTTTTTTCCGTAACAAAATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATGTAGACTCGAA-TAACAATGAT------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACAC--ACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAAaagt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 111 1 1 3333333333 33333 1 11 22222222 555555555555 222222222222222222 11 11111 1111 22 33333 111111 11 1 1111 222222222222222222222222222222222222222222222222222222222 111 11 2222222 111
lowQualScore : 1 1 1 1 1 1 1 66 33 0 0 5 0 444 5 0 1 0 3 3 3 6 9999999999 33333 2 44 7 77 11111111 1 1 111111111111 2 4 555555555555555555 11 0 44444 3333 55 77 1 1 1 1 1 1 2 3 6 3 3 33333 8 8 0 1 666666 1 0 1 888 0 11 8 3 6 99 6 3 1 0 1 1 0 22 1 4444 2 0 1 8 8 3 44 555555555555555555555555555555555555555555555555555555555 1 444 8 11 1 1 8 8 8 8 5 1111111 99 33 66 5 1 66 5 66 5 333 0 1 1 8 0 0 1 444 99 99 6 99 1 8
lowQualScore : . . . . . . . .. .. . . . . ... . . . . . . . . .......... ..... . .. . .. ........ . . ............ . . .................. .. . ..... .... .. .. . . . . . . . . . . . ..... . . . . ...... . . . ... . .. . . . .. . . . . . . . .. . .... . . . . . . .. ......................................................... . ... . .. . . . . . . . ....... .. .. .. . . .. . .. . ... . . . . . . . ... .. .. . .. . .
lowQualScore : 0 0 0 0 0 0 0 55 55 0 2 5 8 000 5 2 0 7 7 3 7 7 7777777777 33333 0 77 3 33 55555555 0 0 222222222222 5 2 222222222222222222 00 8 88888 6666 88 88 0 0 4 0 4 0 7 7 7 2 7 33333 0 0 6 0 888888 0 6 4 444 6 22 0 7 7 22 7 3 0 3 0 0 3 77 0 2222 5 2 4 0 0 2 66 444444444444444444444444444444444444444444444444444444444 0 000 0 00 0 0 0 0 0 0 0 7777777 22 11 99 0 0 99 0 99 7 777 3 0 7 0 8 8 0 000 22 22 7 22 0 0
consensus : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( family-1621 ) : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|1 : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTAAT----GGCTCCCATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAA-AATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA-T--TTACAATT--T---------AATGTCCGATTGGTCTTGACAGAGAAC-ATT--GCCCAAAGTTTGCA---GAAAGTACT--AAATGGGAAAATGAACATATAGATGCCTTTCGCAGATGAATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCTTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTA--------------------------TAG---------CGAA---------------GTTATATGTG---AACA-GAACGT--TACTTGCTGAATACAGG-AT-TGCTTATAA-AAA-CTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCCAGACATTTCTTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCT-CCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|10 : TCATAAAATCAA--GCAAATTAAAGAACTATAAA-ATTTAAGATTCTCAAAACCGTGCGAATTTTGGAAAAT--GT-TCA-C--AAAGGAAGAGCAAAGTAACTCTGATATACCATTCAAAGACTTCCATGCATATT
gi|11 : -------AAAAAAA--AGCGCAAGTATAAA---AATGACGAATGAAAGAATTGGAAA-ATATGCGACTTTTAAAAC-ACCTGTTTTTTGGAAACGCTTT-TCTTC--CAAAAAG-CATAAA--ACACCTGGTAATTCGTTAGATGA
gi|12 : tCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|13 : cttataaatgatacttttat--GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGTGgaaggtcgctggagataatatgctt
gi|14 : aaGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|15 : GATAATGG-AGTTGGAAGC--ATA-ACGTATGTAAATAGGCATGGgaaggtcgctggagataatatgc
gi|16 : aaGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----ttgcccattg
gi|2 : aAATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----TCG-A-TAAAAATAGTCCGTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTATAAAGAAGCATTATATAATTTTAATCTAA---------ATAA---------------GTCAGATGTG---AACA-GAACGT--TAATTGCTGATAACAAG-AT-TGCTTATAA-AAA-CTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCAAGACATTTCCTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGA-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|3 : TAT-AAC--TTTTATTT--A---------AATGTCCCGC----ATTTATG----AC-AGTGAACAC--------TGCGCGAATGTACT--AATTGGGAATACGGACGTTTATATTCCTTTC-TCGGTGAAAAACAGGCGAACTACTG-A------------TTTAAATACTG-----TGG-A-TAAAAATTATCCGTTAAGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-AT--ACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGA-ATGT-ATTCAAGCTAAAACGCGGCA--------------------------TAAAGAAGCATTATAAACTTTATCAAACGAAGTCAGATGAG---AACA-GAATCC--TACTAGCCAATAACAAA-AT-TGTTGATAACAAA-ATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAA--AAAAATGAAATAATAGGAAA-GAATGCGTTATTCAAGATTACGTGGTGTTTGAAAGCG--TT-TTATT--AAgaagg
gi|4 : AAAAAA-ACGTACA-ATAGGGTTAATATAAAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGA-ATGC-AATCACG-TAAAATACAATG--------------------------TAG---------ATAG---------------GTAATACGCGTAAAACATGCATGTGTTACTTGCTGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAA--------TGTGCTTATAAATACAA--ACAAATAAAAGAGTTAGAAAAGTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAATAA-AACAAACTTCCCCAGACATTTCTTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGT-CCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|5 : GATCATGG-CTTTGGAGGA--ATA-ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACA-TCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTTAT---------AACGT-AAAT----ATAATCG----TT-ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAATAAACTTTTATTTCGTAACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACTCG-AGTAACAATTAT------AGTATAAATAGCCTTACCGTACAATTTTCAAAT-TCATACGCAAA--AACTGATCCTTCTT-TTTAAAAA-AA-AC--ACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgaaggtcgctggagataata
gi|6 : aaaATAAAGATGCGTTATTCAGTTTTAA------TA--------------------------GAA---------ATAA---------------AACACACGTT---AATA-GAATAG--AACTGGCTGACCGTAAATATATCATTATTA-ATGTCTTGTC--AAG-------AAAAAAC--GACGTGCATACAAATTTAA--ACAAATGAAAGATATGGAAA-ACATGTGCAAATCGAAACCAAGCGATTTTTGGAA--G--TTATTCTCGAAAAACAG-AACAAGC-AACTCAAATATCAAAATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAACTATATCG-GAGGTGGAG
gi|7 : tGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATACGTTTTTCAAGACCACGTGATTTTTGGAGAAG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATGCCTTGAGATGATTTTAATACATATTTGGTAATTCT-T--CAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTT-CCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAAacagttataagatccctaggcaaaaataagg
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGT-GGGGGT--ATATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTTTT----T--A-GTAGGTCAGTTTACAGAATTT-AGCGATCATGCACCGCT---AAT--TTTTATTA--TAAAGGGGAAAATGTCCAAT----ATTGATA----ATAATT--CGATAAA---T---CATGAATTTATT--AAATGGAATGACGATGACAGACACTTGTTTCGTAACTGAGTAATTGGCGCTTTACCgaaggtcactggagataatatgcttaatgaaca
gi|9 : -ATT--ACCCAAA---TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAGAAACTTTTTTTCCGTAACAAAATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATGTAGACTCGAA-TAACAATGAT------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACAC--ACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAAaagt
blockSeqs : T G C C T G T A AA . T C T A T A C G CACATCGAC TTACA A AA A GC TTCAACAG T T TAAAGGGGAA C C ATTGATAATA GA TG TGTA TA AT C T A C T A A T G A A TAGAC A G A CCGTTA T A ACA TT G G C GT C A T G T AG G GTAC G G T T C AA TAAAGAAGCATTATATAATTTTAATCTAAATAA G TAA T GT T A T A C T G . GA AT TG A A CT A GA G GTA A C A A AAG AA TG A TA G A
blockSeqs : CA . T A . A A . A . TTA . . A . T ATAAC A A TAT C A ATTTATGAC . TG TTTA TA CA A A T A A A A T G A A TAGAC . . T CCGTTA C A ATT G . G . . . G A G T AC T . G C . . C AC TAAAGAAGCATTATAAACTTTATCAAACGAA G . . . A A . . . . C . . TA . . A . . . . CTC G T . T . . . . . G .
blockSeqs : CA . . T . T AAT T T A . A ATAATCGTT . T AC . TG G G A G T T G C T A G . . . T . A T TGT A . A . . . . G A A GT A . . A . . T AT TAGATAG T . . . T T . . . . G . . TT . . C . . . . CTT C T . T . . . . . G .
blockSeqs : . . AC . CA A A T T A T T C T . G . . . G . A T TC T . A . . . . G C A AT T . A . . . . GAAATAA C . . . G C . . . . . . . TA . . A . . . . CTA T T . . . . . . . A .
blockSeqs : T G . . . . . . . . . . G C A G G . . . TT . . C . . . . CA A . . . . . T
blockSeqs : A TA . . G . . . . A T
blockSeqs : . . . A . . .
blockSeqCons : T**** ** *******
originalCons : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATT--ACCCAAA---TGTACGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
finalCons : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATT--ACCCAAAT----TACGTGAAANTACT--AAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----TCG-A-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 111 1 1 3333333333 33333 1 11 22222222 555555555555 222222222222222222 222222 1111 22 22222222222 1 111111 11 1 1111 222222222222222222222222222222222222222222222222222222222 111 11 2222222 111
lowQualScore : 1 1 1 1 1 1 1 66 33 0 0 5 0 444 5 0 1 0 3 3 3 6 9999999999 33333 2 44 7 77 11111111 1 1 111111111111 2 4 555555555555555555 66 8 333333 3 3333 22 77 1 1 1 1 1 1 2 3 6 3 3 77777777777 6 0 1 666666 1 0 1 888 0 11 8 3 6 99 6 3 1 0 1 1 0 22 1 4444 2 0 1 8 8 3 44 555555555555555555555555555555555555555555555555555555555 1 444 8 11 1 1 8 8 8 8 5 1111111 99 33 66 5 1 66 5 66 5 333 0 1 1 8 0 0 1 444 99 99 6 99 1 8
lowQualScore : . . . . . . . .. .. . . . . ... . . . . . . . . .......... ..... . .. . .. ........ . . ............ . . .................. .. . ...... . .... .. .. . . . . . . . . . . . ........... . . . ...... . . . ... . .. . . . .. . . . . . . . .. . .... . . . . . . .. ......................................................... . ... . .. . . . . . . . ....... .. .. .. . . .. . .. . ... . . . . . . . ... .. .. . .. . .
lowQualScore : 0 0 0 0 0 0 0 55 55 0 2 5 8 000 5 2 0 7 7 3 7 7 7777777777 33333 0 77 3 33 55555555 0 0 222222222222 5 2 222222222222222222 88 0 666666 8 6666 00 88 0 0 4 0 4 0 7 7 7 2 7 77777777777 0 6 0 888888 0 6 4 444 6 22 0 7 7 22 7 3 0 3 0 0 3 77 0 2222 5 2 4 0 0 2 66 444444444444444444444444444444444444444444444444444444444 0 000 0 00 0 0 0 0 0 0 0 7777777 22 11 99 0 0 99 0 99 7 777 3 0 7 0 8 8 0 000 22 22 7 22 0 0
consensus : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATTGCCCAA-A--TGTGCGTGAAANTACTTAAAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----T-----CGA-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
Reference ( family-1621 ) : AAANCTACNTNATTANGNATAGCNAATGGCAGANTAGGNTGCGGATCATGG-AGTTGGAGGC--ATATACGTATGTNAACAGGCACGGGTCTAGCGTGATAGATTATCTTTTATTAAAGAAACGCGATTTT-CGGTTAGTGAATAATTTTNA-A-TCGA-GAATGTCAGT-----GAGTTCAAGCGATCACGCGCCGTTATCAAC--TTNTANTT--T---------AATGTCCGAT----ATTGACG----AC-ATTACCCAA-A--T-TACGTGAAANTACT--AAATGGGACGACGAANATANACATTTNTTTCGTAACTGAATAATNGGCGAATTACCGCAGTTCAATAGTTTTTTAGATACTG-----T-----CGA-TAAAAATNATCCGTTAAGTATNAATAATCTTATTGTAAAATTTACGAATACNATACGCGAAGTGGCCGATCC-GCTT-TTTAAAAAGAA-AC--ACA-AT-GTGTCGAGATCAAAGTNTAATATTCANAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAANGCGGTA--------------------------TAA---------ATAA---------------GTCANACGTG---AACA-GAACGT--TACTTGCTGATNACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAAAAAA--AACGTGCTTATAAATNCAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCNAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGACATTTCNTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGATCCAGTTTTCGAAGAACTGGATAGACGTATAAGTGT-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|1 : AAAGCTACCTGATTAAGAATAGCTAATGACAGAATAGGTTGTGACTT-TGGTAAT----GGCTCCCATACATATGTTAACAGGCACGGGTGTAGTGTGATATATTATCTTTTAGTAAGGAAACGCAATTTT-CGATCAGTGAGCAATTTCAA-AATTGA-GAATGTCAAT-----GAGTTCA-GCGACCACGTGCCGTTATCA-T--TTACAATT--T---------AATGTCCGATTGGTCTTGACAGAGAAC-ATTGCCCAA-AGTT-TGCA-GAAAGTACT--AAATGGGAAAATGAACATATAGATGCCTTTCGCAGATGAATAATAGGCAAATTACAACAGTTCAATATTTTTTTAGATACTG-----T-----CGA-TAAAAATAGTCCTTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAATAGTGAT----ACAAAGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTA--------------------------TAG---------CGAA---------------GTTATATGTG---AACA-GAACGT--TACTTGCTGAATACAGG-AT-TGCTTATAA-AAA-CTTATTGAAAACCCCCCCAAAAAAA--AACATGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCCAGACATTTCTTTAGATGATTTTAACACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAGAACTGGATAGACGTATAAGTCT-CCGAGAAGTTGAGGTCGCGATACGAGCGTTGAAGAAAAA
gi|10 : TCATAAAATCAA--GCAAATTAAAGAACTATAAA-ATTTAAGATTCTCAAAACCGTGCGAATTTTGGAAAAT--GT-TCA-C--AAAGGAAGAGCAAAGTAACTCTGATATACCATTCAAAGACTTCCATGCATATT
gi|11 : -------AAAAAAA--AGCGCAAGTATAAA---AATGACGAATGAAAGAATTGGAAA-ATATGCGACTTTTAAAAC-ACCTGTTTTTTGGAAACGCTTT-TCTTC--CAAAAAG-CATAAA--ACACCTGGTAATTCGTTAGATGA
gi|12 : tCGAGAAGTTGGGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|13 : cttataaatgatacttttat--GCCGAGATT--TTTAACACAAATC-ATGATTTTA--CGGATAACGATCCTGTTTTCGAAGAGCCAGATAAGCAGATTAGTGgaaggtcgctggagataatatgctt
gi|14 : aaGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|15 : GATAATGG-AGTTGGAAGC--ATA-ACGTATGTAAATAGGCATGGgaaggtcgctggagataatatgc
gi|16 : aaGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----ttgcccattg
gi|2 : aAATAATAGGCAAATTACCATAGTTCAATGATTTTTTAGATACTG-----T-----CGA-TAAAAATAGTCCGTTAAGTATTAATAATCTTATTGTAAAATTTACGAATACAATCCGCGAAGTGGCCGATCC-GCTT-TTTAAAAGGAA-AT--ACA-AT-GTTTCGGGGTCAAAGTTTAACATTCAGAAAAGTGAT----ACAACGCGGTGGTTTGATAAGGA-GTGT-ATTCAAGCTAAAAAGCGGTATAAAGAAGCATTATATAATTTTAATCTAA---------ATAA---------------GTCAGATGTG---AACA-GAACGT--TAATTGCTGATAACAAG-AT-TGCTTATAA-AAA-CTTAATGAAAA-------AAAAAAAGAAACGTGCTTATCAATACAA--ACAAATGAAAGAGTTGGAAA-GTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAAGAA-AACAAACTCCCCAAGACATTTCCTTAGATGA-TTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTATAACTATTTCCAA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACG--CCAGTTTTCGAAGAACTGGATAGACGTATAAGTGA-CCGAGAAGTTGAGGTCGCGATCCGAGCGTTAAAGAAAAA
gi|3 : TAT-AAC--TTTTATTT--A---------AATGTCCCGC----ATTTATG----AC-AGTG---AACA--C-TGCGCGAATGTACT--AATTGGGAATACGGACGTTTATATTCCTTTC-TCGGTGAAAAACAGGCGAACTACTG-A------------TTTAAATACTG-----T-----GGA-TAAAAATTATCCGTTAAGTATCAAGTATTTTATTGTAAAATTCACGAATATTATACGTGAAGTGGCCGATCG-ATTTGTTTAAAAAGAA-AT--ACA-TT-GTATCGAGTTCAAAGTTTAATGTTCACAACATTGAT----AGTAAGCGATGGTTTGGTGGCGA-ATGT-ATTCAAGCTAAAACGCGGCA--------------------------TAAAGAAGCATTATAAACTTTATCAAACGAAGTCAGATGAG---AACA-GAATCC--TACTAGCCAATAACAAA-AT-TGTTGATAACAAA-ATAATACAAAA-------GAAAAGA--AAGGTGCTTATAAATTCAA--AAAAATGAAATAATAGGAAA-GAATGCGTTATTCAAGATTACGTGGTGTTTGAAAGCG--TT-TTATT--AAgaagg
gi|4 : AAAAAA-ACGTACA-ATAGGGTTAATATAAAAATATAAAATTC-GAATAACGATGTACATAAA-----------ATACAGA-ATGC-AATCACG-TAAAATACAATG--------------------------TAG---------ATAG---------------GTAATACGCGTAAAACATGCATGTGTTACTTGCTGATTACAAA-AT-TGCTTATAA-AAA-CTTATTGAAAA-------AAA--------TGTGCTTATAAATACAA--ACAAATAAAAGAGTTAGAAAAGTATGCGTTTTTCCAGACCACGTGATTTTTGGAGACG--TT-TTATC--AAAATAA-AACAAACTTCCCCAGACATTTCTTTAGATGATTTTAATACATATTTTGTAAATCT-TTTCAAAGATATACCTGTTACTATTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCAGG--ACGACCCAGTTTTCGAAAAGATAGATAGACGTATAAATGT-CCGAGAAGTTGAGGTTGCGATCCGAGCGTTAAAGAAAAA
gi|5 : GATCATGG-CTTTGGAGGA--ATA-ACGTATGTAAATAGGCATGGGTCCAGTGTTATTGATTGTCTTTTGTTGAAAGAATGCGGTTTT-CCGTTAGTGAATGATTTTCACA-TCGACAAATTTCAGT-----GA--TCAAGCG-TCAC-TGATATTTTCAACAGTAATAATTTAT---------AACGT-AAAT----ATAATCG----TT-ATTACCCAA-A--TGTACGTGAAAC--CTTAAAATGGGACAATGAAAATAAACTTTTATTTCGTAACAAGATAATTAGTTAATTGCCGCATTTC-TTAGTTTCTTAGGTAATGTAGACT-----CGAGTAACAATTAT------AGTATAAATAGCCTTACCGTACAATTTTCAAAT-TCATACGCAAA--AACTGATCCTTCTT-TTTAAAAA-AA-AC--ACACATGGTGTTGAGACCAAGCTATTCTATTCGTAATATTAAT----ACAAAgaaggtcgctggagataata
gi|6 : aaaATAAAGATGCGTTATTCAGTTTTAA------TA--------------------------GAA---------ATAA---------------AACACACGTT---AATA-GAATAG--AACTGGCTGACCGTAAATATATCATTATTA-ATGTCTTGTC--AAG-------AAAAAAC--GACGTGCATACAAATTTAA--ACAAATGAAAGATATGGAAA-ACATGTGCAAATCGAAACCAAGCGATTTTTGGAA--G--TTATTCTCGAAAAACAG-AACAAGC-AACTCAAATATCAAAATAGACGATTTTCACAATTATTTTCTCAACTTATTTC-AAGAAATA------AAGACCTCAAAAAGTAATAAGC--ATATTTGTTTAAC-GAAAATCACAATTTTGATGATA--ACAATCCTGTTTATGATGAATTAGACAAACCTATAACTATATCG-GAGGTGGAG
gi|7 : tGCTTATAAATACAA--ACAAATGAAAGAGTTGGAAA-GTATACGTTTTTCAAGACCACGTGATTTTTGGAGAAG--TT-TTATC--AAAAGAA-AACAAACTACCCCAGATATGCCTTGAGATGATTTTAATACATATTTGGTAATTCT-T--CAAGAATGTACCTGCTACTTTTTCCGA---TGAT--GCCGAAACT--TTTAAC-CAAACCCATGATTTCAATCATG--ACGATCCAGTTTTCGAAGAATTGGATAGACGTATAAGCTT-CCGAGAAAATAAGGTCGCGATCCGTGCGTTAAAGAAAAAacagttataagatccctaggcaaaaataagg
gi|8 : AAATCTACGTCATTACGTATAGCGAATGGTAGATTAGGA-GCGGATCATGG-AGT-GGGGGT--ATATACCTATGTTAACAGAAACGCATCTAGCGTGGTAGATTACATCTTATTAAAGAAAAGAGATTTCACAGTTA-TAAATATTTTTT----T--A-GTAGGTCAGTTTACAGAATTT-AGCGATCATGCACCGCT---AAT--TTTTATTA--TAAAGGGGAAAATGTCCAAT----ATTGATA----ATAATTCGATAA-A--T---CATGAATTTATT--AAATGGAATGACGATGACAGACACTTGTTTCGTAACTGAGTAATTGGCGCTTTACCgaaggtcactggagataatatgcttaatgaaca
gi|9 : -ATTACCCAA-A--TGTACGTGAAAC--CTTAAAATGGGACAATGAAAAGAAACTTTTTTTCCGTAACAAAATAATTGTTAAATTGCCGCATTTCAATAGTCTCTTACGTAATG-----TAGACTCGAATAACAATGAT------AGTATAAATAATCTAATTGTACAATTTTCAAATTGTTTACGCAAAGTAGCCGATCC-TCTT-TTTAAAAAAAACAC--ACA-AG-GTGTCGAGACTAAGCTATTCTATTCATAATAGTGAT----ACAAAaagt