lowQualScore : 11111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666666666666 2222222222222222 11 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 33 111 555555555555555555555555555555555 3333333333333 1111
lowQualScore : 6 11111111111111111 8888888888888888 33 4 6 2 1 6 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 0 00 000 777777777777777777777777777777777 6 7777777777777 0 7777
lowQualScore : . ................. ................ .. . . . . . ........................................................................................................................................................................................ .. . .. ... ................................. . ............. . ....
lowQualScore : 0 00000000000000000 0000000000000000 88 0 0 0 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 8 77 000 333333333333333333333333333333333 3 4444444444444 8 0000
consensus : NNAGACAATTATACAAGTTAA-----TTGATAGA-AGTAG-GTT--CGA--CCANTGCCTGTGGTTAAACCGCATCTGTTACTCCG-----CC---T-AT---C------TCAT--------GAA--------ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--GG-G-TTTCCCGCT----NA-TATCN--CCATTAAACAA-CCGATTTA---AATA----N--A------TTACCACT-----TGN-----TTCTTCCATG-AGGTATAN-TG---ATGAA--T---TAGA-AA-T--NTA--TTT----T---CATTTTTG-----G-N-ACN-ATAT----TTCTATGAAATAC
Reference ( gi|4 ) : ACAGATAAT-AT----GTTAAGCTTTTTGATAAA-AATAATGTT--TGA--CCAATGTCTGTGGTTAAACCGCATCTGCTACTTCG-----CC---T-GT---T------TCAT--------GAA--------ACCGATC-A--GGC------TTT----TTTAGGAC----TTCCCA--GC-G-TTTCCTGCT----TG-TATCG--CCATTAAACAA-CAAATTCA---AATA----T--A------TTACCATT-----TGT-----TTCTTCCATC-AGGTATA--TG---ATGAA--T---TAAA-AA-T--GTA--TTT----T---CACTTTTG-----A-A-ACA-ATAT----TTCTATGAAATACTAGTATAAAGATGTCGAAATTCATTTT
gi|1 : AGACAATTATACAAGTTAA-----TTGAT--A-AATCAGGTTTGTGA--ATAATGCCAGTAGTTAAACTGCATCTGTAACTCCG-----CC---A-AT---C------TCATAAATACAGGAA--------ACAGATTAA--GG--------------TTTAGGAC----TT-CCAGTGC-G-TTAAC-GTT----AA-TATCT--CCATTAAACAA-ACAATCTA---ACTAAAAGT--T------TTAC---T-----TGC-----TTATTCCAT--AGG-GTA--TG---ATGGATTT---TAGA-AA-T--
gi|5 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaataTGA-AGA-AGTAGTTTC--CGA--CCATTGCCTGTGATTCAATCGCATTTGCTGCTCCG-----CT---C-TT---C------TCAT--------AAATACAAAAAACAGTCC-A--GA--------TT----CTTAGGA-----TTCCTGT-GG-G-TTTCCTG------TA-AAAAGTTCTGTTAAACAA-CCACTTTA---AATA----C--AAGG---TT--CACT-----TAA-----TTCTTCCATG-ACGT-TAACTG---ATTAA------TAGA-AA-G--ACA--ATTAAGAT---CAGTTTTG-----G-A-act
gi|6 : gagatacattcacctaatcaaacagtgatgtaatttactagcaattaattattcaGATAAACAGTA--GTT--TGGTGCCATTGCCTGTGGTTAAACCGTATCAGTTACTCCA-----TC---T-AG---T------TCATGGATACAAGGA--------ATCGGTC-A--GGT------Tta
gi|3 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagGA--CCAATGCCT-TGTTTTAACCGCACCTGTTACTCCA-----AC---TCGT---TAAAGTATAGT--------AAC--------ACCG-TC-G--AAT------TTCATAATTTAGGGG----TTCCAA--G--G-TGATCCGAT----TGATGTCT--CCATCAAACAA-CCGTTTTA---AGTA----A--A------GTTTCTCT-----TGA-----ATCTGCCATG-AGGTATAG-TG---GGGAG--TAGAGAAACAA-T--TTT--TTT----TC--CATTTTTGCTGCTA-C-ACT-AT-T----TTTTATGAAATA
gi|18 : ggatacctttaactaataaatgactattaaagttaataaatactatgaaaagcTGCCCGTGGTTAAATCGCATTTGTTACTCCA-----CC---C-AT---T------TCAT--------AAgcactt
gi|7 : taaagtttttctttaggaatagttgtTGTGGTTAAACCGCATCTGTTGCCCCA-----CCGCTT-AT---C------TTAT--------GAA-----------TATA-A--G----------T----TTAAGGATATGATTGCAAAAGG-G-TTTCTCGCT----AA-TATTT--CCAATAAACAA-ACGATTTA---AATAT---T--T------TTTTCACA-----TGA-----TTCTTTCATG-AGGTAAAC-CA---ATGAC--T---AGAA-CATT--TTA--TTT----TTTACATTTTTG-----G-T-ACATACAT----gtataagaagcaggcc
gi|17 : tctTTAGAC-GCATCTGTCCCTCCGGAAATCT---T-ATAAAT------ATAA--------GAA--------ACCGATC-AGTGGC-------TT----TGTAAGAT----TTCCTA--GG-A-GTTCCT
gi|14 : taaAACCGCATTCGCCTCTCTG-----CC---A-GT---C------TCAT--------GAATATATA--AAAAAAC-A--GGCAACAAGTTG----TTTCGAAC----TTCCTA--GCAG-TTTCCCGCT----AA-TAT------ATCAAATAA-TAA-TTAA---AATA----TACA------TT-TCATT-----TTA-----TTCTTCC-TCGAGATATcgataattttttcataaagcaa
gi|11 : gC------TTT----TTCAGGAT----TTCCGA--GG-GATTTCTTGCTCATATA-TATCG--GGATTTAACAATCA--TTTT---AATA----A--A------T-ACAATT-----TCTATTAATTCTTGTAT--AGATAAAC-TG---ATGAA--TG--TAAA-GA-C---TAC-TTT----T---TACTTTTG-----G-T-ACA-ATAT----TTCTATAAGATA
gi|12 : TT----TTTAGGA-----TTCC----GT-G-ATTTCTCAT----TG--ATCA--C----AAGCAAGTAAATTGAGAGAAAA----A--A------TCACCTTTCCACATGC-----TTCGTCCATG-AGGTATA--TACAAATGAA--T----AGA-AA-TAAGAA--CTG----T---CATTTTTG-----GGA-AGT-ATAT----TTCTATGAAATAC
gi|9 : cg-TATCC--CCATGTAACAA-CTGATTCA---AATC----A--AGCCTCCTCATGATT-----T-T-----TCCATCCATG-AAGTAAAA-TG---ATGAA--C----AGA-AA-G--ACAATTTT----T---CAGTTTTG-----A-GCACC-ATATCAATTTCTATGAAATA
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|15 ): TTCTCCGCCAATATTTCGATTAACCGACCAATTTATATAAAATTCTCACTTGATCCTTCCAGGAGGTATGGAATGCTGGTGAACAGAAATTATTCTTTTCTCTTCTGAGTGCTTTATTTTCTATGAAAAGGCA
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT
Alignments
lowQualScore : 22222222222 3333333333333333333333333333333333333 22222222222 77777777777777777777777777777777777777777777 111111 111 3333333333333333 111111111 2222 333333333333 11111111 1 222222222
lowQualScore : 99999999999 8888888888888888888888888888888888888 1 55555555555 22222222222222222222222222222222222222222222 9999 8888 4 444 1 000000 0 000 8888 777 4 7777777777777777 1 8888 55 222222222 9999 4 666666666666 22222222 2 5 0 1 66 111111111
lowQualScore : ........... ..................................... . ........... ............................................ .... .... . ... . ...... . ... .... ... . ................ . .... .. ......... .... . ............ ........ . . . . .. .........
lowQualScore : 55555555555 7777777777777777777777777777777777777 0 22222222222 88888888888888888888888888888888888888888888 4444 0000 0 222 0 444444 5 333 5555 000 0 2222222222222222 0 5555 55 111111111 4444 4 000000000000 22222222 6 0 0 0 77 000000000
consensus : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AGTAG-NTTC-GT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCGCC---C-------GTCTCAT--ATACA-GAA------ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATAT----CTCCATTAAACAACCGATTT----A---AAT-A-NAA--TTTCC-----ACTTGATTCTTCCAT----GAGG--T-----ANACTGATGAA--T-TAGAA-A----T--NTA--TTT----T---CACTTTT-G-GTAC-TAT----A----TTTCTATGAAATAC
Reference ( family-1471 ) : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AGTAG-GTTC-G--ACCANTGCCTGTGGTTAAACCGCATCTGTTACTCCGCC---T-------ATCTCAT--------GAA------ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTNATAT----CNCCATTAAACAACCGATTT----A---AAT-A-NA---TTACC-----ACTTGNTTCTTCCAT----GAGG--T-----ATANTGATGAA--T-TAGAA-A----T--NTA--TTT----T---CATTTTT-G-GNAC-NAT----A----TTTCTATGAAATAC
gi|1 : AGACAATTATACAAG---TTAA-----TTG---AT--A-----A-ATCAG-GTTT-GTGAATAATGCCAGTAGTTAAACTGCATCTGTAACTCCGCC---A-------ATCTCATAAATACAGGAA------ACAGATTAA--GG--------------TTTAGGAC----TTCCAG--T-G-C-GTTAACGTTAATAT----CTCCATTAAACAAACAATCT----A---ACT-A-AAAG-TT-TT-----ACTTGCTTATTCCAT----AGGG--T-----A---TGATGGATTT-TAGAA-A----T--
gi|11 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaataC------TTT----TTCAGGAT----TTCCGA--G-G-GATTTCTTGCTCATATATATCGGGATTTAACAATC-ATTTTAATA---AAT-A-CAA--TTTCT-----A-TTAATTCTTGTAT-----AGA--T-----AAACTGATGAA--TGTAAAG-A-------CTAC-TTT----T---TACTTTT-G-GTAC-AAT----A----TTTCTATAAGATAact
gi|12 : TT----TTTAGGAT----TCCGT-----G-A-TTTCTCATTGAT------CACAAGCAAGTAA---ATTG----AGAGAAA-A-AA---TCACCTTTCCACATGCTTCGTCCAT----GAGGTAT-----ATACAAATGAA----TAGAA-A----TAAGAA--CTG----T---CATTTTTGG-GAAG-TAT----A----TTTCTATGAAATAC
gi|14 : cgAACCGCATTCGCCTCTCTGCC---A-------GTCTCAT--------GAATATATAAAAAAAC-A--GGCAACAAGTTG----TTTCGAAC----TTCCTA--GCA-G-TTTCCCGCTAATAT--------ATCAAATAAT-AATTA----A---AAT-A-TACA-TT-TC-----ATTTTATTCTTCCTC----GAGA--T-----AT
gi|15 : g-TTCTCCGCCAATAT----TTCGATTAACCGACCAATTT----A---TAT-A-AAA--TTCTC-----ACTTGATCCTTCCAG----GAGG--TATGGAATGCTGGTGAA----CAGAA-A----TTATTC--TTT----T---CTCTTCT-GAGTGC-TTT----AT---TTTCTATGAAA
gi|17 : TTAGAC-GCATCTGTCCCTCCGGA---A-------ATCTTATAAATATAAGAA------ACCGATC-AGTGGC-------TT----TGTAAGAT----TTCCTA--G-GAG-TTCCTCGATAATTT----TTTCATAAAGCAAaggca
gi|18 : taaTGCCCGTGGTTAAATCGCATTTGTTACTCCACC---C-------ATTTCAT--------AA
gi|3 : taaagtttttctttaggaatagttgtGACTATTA---AAG---TTAA-----TAA---AT--ACTATGA-AA-AG----C-G--ACCAATGCCT-TGTTTTAACCGCACCTGTTACTCCAAC---TCGTTAAAGTATAGT--------AAC------ACCG-TC-G--AAT------TTCATAATTTAGGGG----TTCCAA--G-G-T-GATCCGATTGATGT----CTCCATCAAACAACCGTTTT----A---AGT-A-AA---GTTTC-----TCTTGAATCTGCCAT----GAGG--T-----ATAGTGGGGAG--TAGAGAA-ACAATT--TTT--TTT----C---CATTTTT-G-CTGC-TAC----ACTATTTTTTATGAAATAgtataagaagcaggcc
gi|4 : ggatacctttaactaataaatAGATAAT-AT----G---TTAAGCTTTTTG---AT--A----AA-AATAATGTTT-G--ACCAATGTCTGTGGTTAAACCGCATCTGCTACTTCGCC---T-------GTTTCAT--------GAA------ACCGATC-A--GGC------TTT----TTTAGGAC----TTCCCA--G-C-G-TTTCCTGCTTGTAT----CGCCATTAAACAACAAATTC----A---AAT-A-TA---TTACC-----ATTTGTTTCTTCCAT----CAGG--T-----ATA-TGATGAA--T-TAAAA-A----T--GTA--TTT----T---CACTTTT-G-AAAC-AAT----A----TTTCTATGAAATACgcactt
gi|5 : acAATT-TACTAGCAATTAA-----TTATTCATGAA----GA-AGTAG-TTTCCG--ACCATTGCCTGTGATTCAATCGCATTTGCTGCTCCGCT---C-------TTCTCATAAATACAAAAA------ACAGTCC-A--GA--------TT----CTTAGGAT----TCCTGT--G-G-G-TTTCCTGTAAAAAG----TTCTGTTAAACAACCACTTT----A---AAT-A-CAAGGTT--C-----ACTTAATTCTTCCAT----GACG--T-----TAACTGATTAA----TAGAA-A----G--ACA--ATTAAGAT---CAGTTTT-G-Gtagtataaagatgtcgaaattcatttt
gi|6 : gagatacattcacctaatcaaacagtgatgtG---AT--A----AACAGTAG-TTTG-GT-GCCATTGCCTGTGGTTAAACCGTATCAGTTACTCCATC---T-------AGTTCATGGATACAAGGA------ATCGGTC-A--GGT------Tata
gi|7 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagCTTGTGGTTAAACCGCATCTGTTGCCCCACCGCTT-------ATCTTAT--------GAA---------TATA-A--G----------T----TTAAGGATATGATTGCAAAAG-G-G-TTTCTCGCTAATAT----TTCCAATAAACAAACGATTT----A---AAT-ATTT---TTTTC-----ACATGATTCTTTCAT----GAGG--T-----AAACCAATG-A--C-TAGAACAT---T--TTA--TTT----TTTACATTTTT-G-GTACATAC----A----TT
gi|9 : tCCTG--G-G-G-GTGTCCACAAATAT----CCCCATGTAACAACTGATTC----A---AATCA-AG---CCTCC-----TCATGATTTTTCCATCCATGAAG--T-----AAAATGATGAA----CAGAA-A----G--ACAATTTT----T---CAGTTTT-GAGCAC-CATATCAA----TTTCTATGAAATA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT
Alignments
lowQualScore : 22222222222 3333333333333333333333333333333333333 3333333333333333333333333333333333333333333 111 111111111 11111111111 22222 33333333333333 11111111 1 2222222222222
lowQualScore : 99999999999 2222222222222222222222222222222222222 3 4 999 3 9999 3333333333333333333333333333333333333333333 1 9999 8888 4 444 555 666 000 8888 1 333333333 1 8888 44444444444 66666 4 66666666666666 22222222 2 0 0 3333333333333
lowQualScore : ........... ..................................... . . ... . .... ........................................... . .... .... . ... ... ... ... .... . ......... . .... ........... ..... . .............. ........ . . . .............
lowQualScore : 55555555555 4444444444444444444444444444444444444 7 4 000 7 4444 3333333333333333333333333333333333333333333 0 4444 0000 0 222 444 444 333 5555 0 666666666 4 5555 33333333333 44444 4 88888888888888 22222222 2 0 3 0000000000000
consensus : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AATAGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-AG--GC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
Reference ( family-1471 ) : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AGTAGN-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-AG--GC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
gi|1 : AGACAATTATACAAG---TTAA-----TTG---AT--A-----A-ATCAGG-TTTGTGAATAATGCCAGTAGTTAAACTGCATCTGTAACTCCG-CC-AATCTC----ATAAA--TAC-AGG-AA-ACAGATTAAG--G--------------TTTAGGAC----TTCCAG--T-G-C-GTTAACGTTAATATCT-CC---ATTAAACAAACAATCT----AACTAAA-A-------GTTTTACTTGCTTATTCCAT----AGGGT-----A-----TGATGGATTT-TAGAA-A----T--
gi|11 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaataC------TTT----TTCAGGAT----TTCCGA--G-G-GATTTCTTGCTCATATATATCGGGATTTAACAATC-ATTTTAATAAATACA-A-------TTTCTA-TTAATTCTTGTAT-----AGAT-----AAA--CTGATGAA--TGTAAAG-A-------CT--AC-TTT----T---TACTTTTG-GTAC-AAT----A----TTTCTATAAGATAact
gi|12 : TT----TTTAGGAT----TCCGT-----G-A-TTTCTCATTGAT--CA-CA---AGCAAGTAA---ATTG----AGAGAAA-AAATCACCTTTCCACATGCTTCGTCCAT----GAGGT-----ATATACAAATGAA--T--AGAA-A----T--AAGAA--CTG----T---CATTTTTG-GGAAGTAT----A----TTTCTATGAAATAC
gi|14 : cgAACCGCATTCGCCTCTCTG-CC-AGTCTCATGAAT--A--TAT-A-A-AA-A---AAC-AG--GCAACAAGTTG----TTTCGAAC----TTCCTA--GCA-G-TTTCCCGCTAATAT--------ATCAAATAA-TAATTA----AAATATACA-------TTT-CATTTTATTCTTCCTC----GAGAT-----A
gi|15 : g-TTCTCCGCCAATATTT-CG---ATTAACCGACCAATTT----ATATAAA-A-------TTCTCACTTGATCCTTCCAG----GAGGTATGGAATG--CTGGTGAA----CAGAA-A----TTATT--C--TTT----T---CTCTTCTGAGTGC-TTT----AT---TTTCTATGAAAt
gi|17 : TTAGAC-GCATCTGTCCCTCCG-GA-AATCTT----AT--AAATAT-AAG-AA-ACCGATC-AGTGGC------TTT----GT-AAGAT----TTCCTA--G-GAG-TTCCTCGATAATTTTT-TC---ATAAAGCAAaggca
gi|18 : taaT--A----GG-AATAGT-T--GT------TGCCCGTGGTTAAATCGCATTTGTTACTCCA-CC-CATTTC----AT--A--
gi|3 : taaagtttttcttGACTATTA---AAG---TTAA-----TAA---AT--ACTATGA-AA-AG----CG--ACCAATGCCT-TGTTTTAACCGCACCTGTTACTCCAACT-CGT-TA----AA--G--TAT-A-GTAACACCG-TC-GA--AT------TTCATAATTTAGGGG----TTCCAA--G-G-T-GATCCGATTGATGTCT-CC---ATCAAACAACCGTTTT----AAGTAAA-G-------TTTCT-CTTGAATCTGCCAT----GAGGT-----ATA--GTGGGGAG--TAGAGAA-ACAATT--TT--T--TTT----C---CATTTTTG-CTGC-TAC----ACTATTTTTTATGAAATAagtataagaagcaggcc
gi|4 : ggatacctttaactaataaatAGATAAT-AT----G---TTAAGCTTTTTG---AT--A----AA-AATAATGTTTG--ACCAATGTCTGTGGTTAAACCGCATCTGCTACTTCG-CC-TGTTTC----AT-----------G-AA-ACCGATC-AG--GC------TTT----TTTAGGAC----TTCCCA--G-C-G-TTTCCTGCTTGTATCG-CC---ATTAAACAACAAATTC----AAATAT--A-------TTACCATTTGTTTCTTCCAT----CAGGT-----ATA---TGATGAA--T-TAAAA-A----T--GT--A--TTT----T---CACTTTTG-AAAC-AAT----A----TTTCTATGAAATACgcactt
gi|5 : acAATT-TACTAGCAATTAA-----TTATTCATGAA----GA-AGTAGT-TTCCG-ACCATTGCCTGTGATTCAATCGCATTTGCTGCTCCG-CT-CTTCTC----AT--AAATAC-A-A-AA-AACAGTCCAG--A--------TT----CTTAGGAT----TCCTGT--G-G-G-TTTCCTGTAAAAAGTT-CT---GTTAAACAACCACTTT----AAATACA-A-------GGTTCACTTAATTCTTCCAT----GACGT-----TAA--CTGATTAA----TAGAA-A----G--AC--A--ATTAAGAT---CAGTTTTG-Gtagtataaagatgtcgaaattcatttt
gi|6 : gagatacattcacctaatcaaacagtgatgtG---AT--A----AACAGTAGT-TTGGT-GCCATTGCCTGTGGTTAAACCGTATCAGTTACTCCA-TC-TAGTTC----ATGGA--TACAA-G-GA-ATCGGTC-AG--GT------Tata
gi|7 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagCTTGTGGTTAAACCGCATCTGTTGCCCCA-CCGCTTATC----TT--A--T-----G-AA----TATA-AG------------T----TTAAGGATATGATTGCAAAAG-G-G-TTTCTCGCTAATATTT-CC---AATAAACAAACGATTT----AAATATT-T-------TTTTCACATGATTCTTTCAT----GAGGT-----AAA--CCAATG-A--C-TAGAACAT---T--TT--A--TTT----TTTACATTTTTG-GTACATAC----A----TT
gi|9 : tCCTG--G-G-G-GTGTCCACAAATATCC-CC---ATGTAACAACTGATTC----AAATCAA-G-------CCTCCTCATGATTTTTCCATCCATGAAGT-----AAA--ATGATGAA----CAGAA-A----G--AC--AATTTT----T---CAGTTTTGAGCAC-CATATCAA----TTTCTATGAAATA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT
Alignments
lowQualScore : 22222222222 33333333333333333333333333333333333333 3333333333333333333333333333333333333333333 111 111111111 11111111111 22222 33333333333333 11111111 1 2222222222222
lowQualScore : 99999999999 00000000000000000000000000000000000000 3 4 999 3 9999 8888888888888888888888888888888888888888888 9999 8888 4 444 555 666 000 8888 1 333333333 1 8888 44444444444 66666 4 66666666666666 22222222 2 0 0 3333333333333
lowQualScore : ........... ...................................... . . ... . .... ........................................... .... .... . ... ... ... ... .... . ......... . .... ........... ..... . .............. ........ . . . .............
lowQualScore : 55555555555 11111111111111111111111111111111111111 7 4 000 7 4444 8888888888888888888888888888888888888888888 4444 0000 0 222 444 444 333 5555 0 666666666 4 5555 33333333333 44444 4 88888888888888 22222222 2 0 3 0000000000000
consensus : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
Reference ( family-1471 ) : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
gi|1 : AGACAATTATACAAG---TTAA-----TTG---AT--------A-AATCAGG-TTTGTGAATAATGCCAGTAGTTAAACTGCATCTGTAACTCCG-CC-AATCTC----ATAAA--TAC-AGG-AA-ACAGATTAA--GG--------------TTTAGGAC----TTCCAG--T-G-C-GTTAACGTTAATATCT-CC---ATTAAACAAACAATCT----AACTAAA-A-------GTTTTACTTGCTTATTCCAT----AGGGT-----A-----TGATGGATTT-TAGAA-A----T--
gi|11 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaataC------TTT----TTCAGGAT----TTCCGA--G-G-GATTTCTTGCTCATATATATCGGGATTTAACAATC-ATTTTAATAAATACA-A-------TTTCTA-TTAATTCTTGTAT-----AGAT-----AAA--CTGATGAA--TGTAAAG-A-------CT--AC-TTT----T---TACTTTTG-GTAC-AAT----A----TTTCTATAAGATAact
gi|12 : TT----TTTAGGAT----TCCGT-----G-A-TTTCTCATTGAT--CA-CA---AGCAAGTAA---ATTG----AGAGAAA-AAATCACCTTTCCACATGCTTCGTCCAT----GAGGT-----ATATACAAATGAA--T--AGAA-A----T--AAGAA--CTG----T---CATTTTTG-GGAAGTAT----A----TTTCTATGAAATAC
gi|14 : cgAACCGCATTCGCCTCTCTG-CC-AGTCTCATGAAT--A--TAT-A-A-AA-A---AAC-A--GGCAACAAGTTG----TTTCGAAC----TTCCTA--GCA-G-TTTCCCGCTAATAT--------ATCAAATAA-TAATTA----AAATATACA-------TTT-CATTTTATTCTTCCTC----GAGAT-----A
gi|15 : g-TTCTCCGCCAATATTT-CG---ATTAACCGACCAATTT----ATATAAA-A-------TTCTCACTTGATCCTTCCAG----GAGGTATGGAATG--CTGGTGAA----CAGAA-A----TTATT--C--TTT----T---CTCTTCTGAGTGC-TTT----AT---TTTCTATGAAAt
gi|17 : TTAGAC-GCATCTGTCCCTCCG-GA-AATCTT----AT--AAATAT-AAG-AA-ACCGATC-AGTGGC-------TT----TGTAAGAT----TTCCTA--G-GAG-TTCCTCGATAATTTTT-TC---ATAAAGCAAaggca
gi|18 : taaT--A----GG-AAT-AGT-T--GT------TGCCCGTGGTTAAATCGCATTTGTTACTCCA-CC-CATTTC----AT--A--
gi|3 : taaagtttttcttGACTATTA---AAG---TTAA-----TAA---AT--ACTATGA-AA--AG----CG--ACCAATGCCT-TGTTTTAACCGCACCTGTTACTCCAACT-CGT-TA----AA--G--TAT-A-GTAACACCG-TC-G--AAT------TTCATAATTTAGGGG----TTCCAA--G-G-T-GATCCGATTGATGTCT-CC---ATCAAACAACCGTTTT----AAGTAAA-G-------TTTCT-CTTGAATCTGCCAT----GAGGT-----ATA--GTGGGGAG--TAGAGAA-ACAATT--TT--T--TTT----C---CATTTTTG-CTGC-TAC----ACTATTTTTTATGAAATAagtataagaagcaggcc
gi|4 : ggatacctttaactaataaatAGATAAT-AT----G---TTAAGCTTTTTG---AT--A----AA-AAT-AATGTTTG--ACCAATGTCTGTGGTTAAACCGCATCTGCTACTTCG-CC-TGTTTC----AT-----------G-AA-ACCGATC-A--GGC------TTT----TTTAGGAC----TTCCCA--G-C-G-TTTCCTGCTTGTATCG-CC---ATTAAACAACAAATTC----AAATAT--A-------TTACCATTTGTTTCTTCCAT----CAGGT-----ATA---TGATGAA--T-TAAAA-A----T--GT--A--TTT----T---CACTTTTG-AAAC-AAT----A----TTTCTATGAAATACgcactt
gi|5 : acAATT-TACTAGCAATTAA-----TTATTCATGAA----GA-AGT-AGT-TTCCG-ACCATTGCCTGTGATTCAATCGCATTTGCTGCTCCG-CT-CTTCTC----AT--AAATAC-A-A-AA-AACAGTCCA--GA--------TT----CTTAGGAT----TCCTGT--G-G-G-TTTCCTGTAAAAAGTT-CT---GTTAAACAACCACTTT----AAATACA-A-------GGTTCACTTAATTCTTCCAT----GACGT-----TAA--CTGATTAA----TAGAA-A----G--AC--A--ATTAAGAT---CAGTTTTG-Gtagtataaagatgtcgaaattcatttt
gi|6 : gagatacattcacctaatcaaacagtgatgtG---AT--A----AACAGT-AGT-TTGGT-GCCATTGCCTGTGGTTAAACCGTATCAGTTACTCCA-TC-TAGTTC----ATGGA--TACAA-G-GA-ATCGGTC-A--GGT------Tata
gi|7 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagCTTGTGGTTAAACCGCATCTGTTGCCCCA-CCGCTTATC----TT--A--T-----G-AA----TATA-A--G----------T----TTAAGGATATGATTGCAAAAG-G-G-TTTCTCGCTAATATTT-CC---AATAAACAAACGATTT----AAATATT-T-------TTTTCACATGATTCTTTCAT----GAGGT-----AAA--CCAATG-A--C-TAGAACAT---T--TT--A--TTT----TTTACATTTTTG-GTACATAC----A----TT
gi|9 : tCCTG--G-G-G-GTGTCCACAAATATCC-CC---ATGTAACAACTGATTC----AAATCAA-G-------CCTCCTCATGATTTTTCCATCCATGAAGT-----AAA--ATGATGAA----CAGAA-A----G--AC--AATTTT----T---CAGTTTTGAGCAC-CATATCAA----TTTCTATGAAATA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT
Alignments
lowQualScore : 22222222222 33333333333333333333333333333333333333 3333333333333333333333333333333333333333333 111 111111111 11111111111 22222 33333333333333 11111111 1 2222222222222
lowQualScore : 99999999999 00000000000000000000000000000000000000 3 4 999 3 9999 8888888888888888888888888888888888888888888 9999 8888 4 444 555 666 000 8888 1 333333333 1 8888 44444444444 66666 4 66666666666666 22222222 2 0 0 3333333333333
lowQualScore : ........... ...................................... . . ... . .... ........................................... .... .... . ... ... ... ... .... . ......... . .... ........... ..... . .............. ........ . . . .............
lowQualScore : 55555555555 11111111111111111111111111111111111111 7 4 000 7 4444 8888888888888888888888888888888888888888888 4444 0000 0 222 444 444 333 5555 0 666666666 4 5555 33333333333 44444 4 88888888888888 22222222 2 0 3 0000000000000
consensus : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
Reference ( family-1471 ) : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
gi|1 : AGACAATTATACAAG---TTAA-----TTG---AT--------A-AATCAGG-TTTGTGAATAATGCCAGTAGTTAAACTGCATCTGTAACTCCG-CC-AATCTC----ATAAA--TAC-AGG-AA-ACAGATTAA--GG--------------TTTAGGAC----TTCCAG--T-G-C-GTTAACGTTAATATCT-CC---ATTAAACAAACAATCT----AACTAAA-A-------GTTTTACTTGCTTATTCCAT----AGGGT-----A-----TGATGGATTT-TAGAA-A----T--
gi|11 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaataC------TTT----TTCAGGAT----TTCCGA--G-G-GATTTCTTGCTCATATATATCGGGATTTAACAATC-ATTTTAATAAATACA-A-------TTTCTA-TTAATTCTTGTAT-----AGAT-----AAA--CTGATGAA--TGTAAAG-A-------CT--AC-TTT----T---TACTTTTG-GTAC-AAT----A----TTTCTATAAGATAact
gi|12 : TT----TTTAGGAT----TCCGT-----G-A-TTTCTCATTGAT--CA-CA---AGCAAGTAA---ATTG----AGAGAAA-AAATCACCTTTCCACATGCTTCGTCCAT----GAGGT-----ATATACAAATGAA--T--AGAA-A----T--AAGAA--CTG----T---CATTTTTG-GGAAGTAT----A----TTTCTATGAAATAC
gi|14 : cgAACCGCATTCGCCTCTCTG-CC-AGTCTCATGAAT--A--TAT-A-A-AA-A---AAC-A--GGCAACAAGTTG----TTTCGAAC----TTCCTA--GCA-G-TTTCCCGCTAATAT--------ATCAAATAA-TAATTA----AAATATACA-------TTT-CATTTTATTCTTCCTC----GAGAT-----A
gi|15 : g-TTCTCCGCCAATATTT-CG---ATTAACCGACCAATTT----ATATAAA-A-------TTCTCACTTGATCCTTCCAG----GAGGTATGGAATG--CTGGTGAA----CAGAA-A----TTATT--C--TTT----T---CTCTTCTGAGTGC-TTT----AT---TTTCTATGAAAt
gi|17 : TTAGAC-GCATCTGTCCCTCCG-GA-AATCTT----AT--AAATAT-AAG-AA-ACCGATC-AGTGGC-------TT----TGTAAGAT----TTCCTA--G-GAG-TTCCTCGATAATTTTT-TC---ATAAAGCAAaggca
gi|18 : taaT--A----GG-AAT-AGT-T--GT------TGCCCGTGGTTAAATCGCATTTGTTACTCCA-CC-CATTTC----AT--A--
gi|3 : taaagtttttcttGACTATTA---AAG---TTAA-----TAA---AT--ACTATGA-AA--AG----CG--ACCAATGCCT-TGTTTTAACCGCACCTGTTACTCCAACT-CGT-TA----AA--G--TAT-A-GTAACACCG-TC-G--AAT------TTCATAATTTAGGGG----TTCCAA--G-G-T-GATCCGATTGATGTCT-CC---ATCAAACAACCGTTTT----AAGTAAA-G-------TTTCT-CTTGAATCTGCCAT----GAGGT-----ATA--GTGGGGAG--TAGAGAA-ACAATT--TT--T--TTT----C---CATTTTTG-CTGC-TAC----ACTATTTTTTATGAAATAagtataagaagcaggcc
gi|4 : ggatacctttaactaataaatAGATAAT-AT----G---TTAAGCTTTTTG---AT--A----AA-AAT-AATGTTTG--ACCAATGTCTGTGGTTAAACCGCATCTGCTACTTCG-CC-TGTTTC----AT-----------G-AA-ACCGATC-A--GGC------TTT----TTTAGGAC----TTCCCA--G-C-G-TTTCCTGCTTGTATCG-CC---ATTAAACAACAAATTC----AAATAT--A-------TTACCATTTGTTTCTTCCAT----CAGGT-----ATA---TGATGAA--T-TAAAA-A----T--GT--A--TTT----T---CACTTTTG-AAAC-AAT----A----TTTCTATGAAATACgcactt
gi|5 : acAATT-TACTAGCAATTAA-----TTATTCATGAA----GA-AGT-AGT-TTCCG-ACCATTGCCTGTGATTCAATCGCATTTGCTGCTCCG-CT-CTTCTC----AT--AAATAC-A-A-AA-AACAGTCCA--GA--------TT----CTTAGGAT----TCCTGT--G-G-G-TTTCCTGTAAAAAGTT-CT---GTTAAACAACCACTTT----AAATACA-A-------GGTTCACTTAATTCTTCCAT----GACGT-----TAA--CTGATTAA----TAGAA-A----G--AC--A--ATTAAGAT---CAGTTTTG-Gtagtataaagatgtcgaaattcatttt
gi|6 : gagatacattcacctaatcaaacagtgatgtG---AT--A----AACAGT-AGT-TTGGT-GCCATTGCCTGTGGTTAAACCGTATCAGTTACTCCA-TC-TAGTTC----ATGGA--TACAA-G-GA-ATCGGTC-A--GGT------Tata
gi|7 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagCTTGTGGTTAAACCGCATCTGTTGCCCCA-CCGCTTATC----TT--A--T-----G-AA----TATA-A--G----------T----TTAAGGATATGATTGCAAAAG-G-G-TTTCTCGCTAATATTT-CC---AATAAACAAACGATTT----AAATATT-T-------TTTTCACATGATTCTTTCAT----GAGGT-----AAA--CCAATG-A--C-TAGAACAT---T--TT--A--TTT----TTTACATTTTTG-GTACATAC----A----TT
gi|9 : tCCTG--G-G-G-GTGTCCACAAATATCC-CC---ATGTAACAACTGATTC----AAATCAA-G-------CCTCCTCATGATTTTTCCATCCATGAAGT-----AAA--ATGATGAA----CAGAA-A----G--AC--AATTTT----T---CAGTTTTGAGCAC-CATATCAA----TTTCTATGAAATA
blockSeqs : TTACTAGCAA GCTTTTTGATAAAAATAATGTTTGA A A GCT C ATGA GTATAGTAACACCGTCGAATTTCATAA ATGA AAAA C GA ATA GGG CCA TAAT C AAATCACC C CCAT ATGGAATGC TGT C CAATTTTT AAGAT T A TACACTAT
blockSeqs : TAAAG TTATTCATGAAGAAGTAGTTTCCGA A . AG C . AAATATAAGAAACCGATCAGTGGCTT . GA . AG CA . CCG . A CA C . ATATAC TAG . TAAGAA TTTA C A CATATCAA
blockSeqs : ATG TAAATACTATGAAAAGCGA T . AA T . ATATAAAAAAACAGGCAACAAGTTG . TA . A TT . CAA . T A T . AAAC TT . TTATTC T T . GTATA
blockSeqs : T . CA T . AAATACAAAAAACAGTCCAGATT . TA . G TT . CCA . A A C . ATAG CT . GACAAT T C . TTTAT
blockSeqs : . . CG C . GAAACCGATCAGGCTTT . AA . T CT . ACG . A G C . TAAC T . TTTTA C G . ATACA
blockSeqs : . TG T . ATGAATATAAGT . CA . G CG . CTG . T A T . AAAC C . TGTA T T . AATA
blockSeqs : . CT A . . GT . G TT . TC . C A T . AAAA T . GACA T G .
blockSeqs : . TA . . . TG . G TT . TA . T T C . ATA C .
blockSeqs : T . G CC . . . A G . .
blockSeqs : . .
blockSeqCons : AAATATAAGAAACCGACCAGTTGCTT***************** AAAC******* T**** TNTA********** ATATA********
originalCons : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----AT--A--TAC-A-G-AA-ACCGATC-A--GGC------TTT----TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGT-----ANA--CTGATGAA--T-TAGAA-A----T--NT--A--TTT----T---CACTTTTG-GTAC-TAT----A----TTTCTATGAAATAC
finalCons : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCCG-CC-CGTCTC----ATAAATATAAGAAACCGACCAGTTGCTT-----------------TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATTT----AAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGTAAAC-------TGATGAAT----AGAA-ATNTA----------TTT----T---CACTTTTG-GTACATATA--------TTTCTATGAAATAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT
Alignments
lowQualScore : 22222222222 33333333333333333333333333333333333333 11111 3333333333333333333 111 111111111 222222222 111 11111 22222222222 11111111 11111111111 1111
lowQualScore : 99999999999 00000000000000000000000000000000000000 3 4 33333 0 1 4 777 4 9999999999999999999 9999 8888 4 444 555 666 000 8888 1 333333333 1 8888 111111111 222 11111 4 99999999999 55555555 2 77777777777 1111
lowQualScore : ........... ...................................... . . ..... . . . ... . ................... .... .... . ... ... ... ... .... . ......... . .... ......... ... ..... . ........... ........ . ........... ....
lowQualScore : 55555555555 11111111111111111111111111111111111111 7 4 11111 9 4 4 888 4 0000000000000000000 4444 0000 0 222 444 444 333 5555 0 666666666 4 5555 333333333 222 11111 4 00000000000 44444444 2 44444444444 6666
consensus : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCC-GCC---CGTCTCATAAA-TAT---AAGAA-AC---CGACCAGTTGC-TT--TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATT----TAAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGTA---A-A--CTGATGAA---TAGA-----A-A-T--NT--A--TTT----T---CACTTTTG--G-TA-CA-TAT--A-TTTCTATGAAATAC
Reference ( family-1471 ) : NNAGACAATTATACAAG---TTAA-----TTG---AT--A----GA-AAT-AGT-TTCGT-ACCAATGCCTGTGGTTAAACCGCATCTGTTACTCC-GCC---CGTCTCATAAA-TAT---AAGAA-AC---CGACCAGTTGC-TT--TTTAGGAT----TTCCNA--G-G-G-TTTCCCGCTAATATCT-CC---ATTAAACAACCGATT----TAAATANA-A-------TTTCCACTTGATTCTTCCAT----GAGGTA---A-A--CTGATGAA---TAGA-----A-A-T--NT--A--TTT----T---CACTTTTG--G-TA-CA-TAT--A-TTTCTATGAAATAC
gi|1 : AGACAATTATACAAG---TTAA-----TTG---AT--------A-AATCAGG-TTTGTGAATAATGCCAGTAGTTAAACTGCATCTGTAACTCC-GCC---AATCTCATAAA-TAC---AGGAA-AC---AGA----TTAA-GG--TTTAGGAC----TTCCAG--T-G-C-GTTAACGTTAATATCT-CC---ATTAAACAAACAATC----TAACTAAA-A-------GTTTTACTTGCTTATTCCAT----AGGGTA---------TGATGGATTTTAGA-----A-A-T--
gi|11 : taagatgtattttctactgaggttgacgttaggtcatgtacatgtatatacatgttttcaattttaaactaaccagtaaatactgatacatattgcaatagaagcgataaaaccaaacactcttatgtattgcgtttacacgtgtggtccattgaatcatcggaaaaatgaacatttcccttgactaatttaagaaccaaccacattttttttaatttgaaagtatttaatttggaataaacgaatggcatattacattctggaataagtatgtattctgtgcgttcttatgtttgaaaaacatgaaccgttattttagcaatatcttcactggatacctttaccaaata-TT--TTCAGGAT----TTCCGA--G-G-GATTTCTTGCTCATATATATCGGGATTTAACAATC-ATTTTAATAAATACA-A-------TTTCTA-TTAATTCTTGTAT-----AGATA---A-A--CTGATGAA---TGTA-----A-A-GA-CT--AC-TTT----T---TACTTTTG--G-TA-CA--AT--A-TTTCTATAAGATAact
gi|12 : ct-TT--TTTAGGAT----TCCGT-----G-A-TTTCTCATTGAT--CA-CA---AGCAAGTAA---ATT----GAGAGAAA-AAATCACCTTTCCACATGCTTCGTCCAT----GAGGTAT--ATA--CAAATGAA---TAGA-----A-A-T--AAGAA--CTG----T---CATTTTTG--G-GA-AG-TAT--A-TTTCTATGAAATAC
gi|14 : cgAACCGCATTCGCCTCTCT-GCC---AGTCTCATGAA-TATATAAAAAA-ACAGGCAACAAGTTG------TTTCGAAC----TTCCTA--GCA-G-TTTCCCGCTAATAT--------ATCAAATAA-TAATT----AAAATATACA-------TTT-CATTTTATTCTTCCTC----GAGATA---
gi|15 : g-TTCTCCGCCAATATTT-CG---ATTAACCGACCAATT----TATATAAA-A-------TTCTCACTTGATCCTTCCAG----GAGGTATGGA-ATGCTGGTGAA---CAGA-----A-A-TTATT--C--TTT----T---CTCTTCTGA-G-TG-C--TTT--ATTTTCTATGAAAt
gi|17 : TTAGAC-GCATCTGTCCCTCC-GGA---AATCTTATAAA-TAT---AAGAA-AC---CGATCAGTGGC-TT--TGTAAGAT----TTCCTA--G-GAG-TTCCTCGATAATTTTT-TC---ATAAAGCAAaggca
gi|18 : taaT--A----GG-AAT-AGT-T--GT------TGCCCGTGGTTAAATCGCATTTGTTACTCC-ACC---CATTTCATAAG-TAT---AAGAA-GC---AGGCC
gi|3 : taaagtttttcttGACTATTA---AAG---TTAA-----TAA---AT--ACTATGA-AA--AG----CG--ACCAATGCCT-TGTTTTAACCGCACCTGTTACTCCAACT---CGT----TAAAGTAT---AGTAACAC---CGTCGAATTTC-ATAATTTAGGGG----TTCCAA--G-G-T-GATCCGATTGATGTCT-CC---ATCAAACAACCGTTT----TAAGTAAA-G-------TTTCT-CTTGAATCTGCCAT----GAGGTA---T-A--GTGGGGAG---TAGAGAAACA-A-T--TT--T--TTT----TC--CATTTTTGCTGCTA-CACTAT----TTTTTATGAAATA
gi|4 : ggatacctttaactaataaatAGATAAT-AT----G---TTAAGCTTTTTG---AT--A----AA-AAT-AATGTTTG--ACCAATGTCTGTGGTTAAACCGCATCTGCTACTTC-GCC---TGTTTCAT------------GAA-AC---CGATCAG--GCTTT--TTTAGGAC----TTCCCA--G-C-G-TTTCCTGCTTGTATCG-CC---ATTAAACAACAAATT----CAAATAT--A-------TTACCATTTGTTTCTTCCAT----CAGGTA---T-A---TGATGAAT--TAAA-----A-A-T--GT--A--TTT----T---CACTTTTG--A-AA-CA--AT--A-TTTCTATGAAATACgcactt
gi|5 : acAATT-TACTAGCAATTAA-----TTATTCATGAA----GA-AGT-AGT-TTCCG-ACCATTGCCTGTGATTCAATCGCATTTGCTGCTCC-GCT---CTTCTCATAAA-TAC---AAAAA-AC---AGTCCAG---A-TT--CTTAGGAT----TCCTGT--G-G-G-TTTCCTGTAAAAAGTT-CT---GTTAAACAACCACTT----TAAATACA-A-------GGTTCACTTAATTCTTCCAT----GACGTT---A-A--CTGATTAA---TAGA-----A-A-G--AC--A--ATTAAGAT---CAGTTTTG--G-tagtataaagatgtcgaaattcatttt
gi|6 : gagatacattcacctaatcaaacagtgatgtG---AT--A----AACAGT-AGT-TTGGT-GCCATTGCCTGTGGTTAAACCGTATCAGTTACTCC-ATC---TAGTTCATGGA-TAC---AAGGA-AT---CGGTCAGata
gi|7 : gacaaaagttatgtattttgcttatgtttcaaaaagatctgactgtatcttagtaccatcactatgcaatcattagtatgttatccgggctttattggatacctcggcctgatgagataagCTTGTGGTTAAACCGCATCTGTTGCCCC-ACCGCTTATCTTATGAA-TAT---AAG---------------------T--TTAAGGATATGATTGCAAAAG-G-G-TTTCTCGCTAATATTT-CC---AATAAACAAACGATT----TAAATATT-T-------TTTTCACATGATTCTTTCAT----GAGGTA---A-A--CCAATGAC---TAGA-----ACATT--TT--A--TTT----TTTACATTTTTG--G-TA-CA-TAC--A-TTgtt
gi|9 : tCCTG--G-G-G-GTGTCCACAAATATCC-CC---ATGTAACAACTGATT----CAAATCAA-G-------CCTCCTCATGATTTTTCCATCCATGAAGTA---A-A--ATGATGAA---CAGA-----A-A-G--AC--AATTTT----T---CAGTTTTGA-G-CACCA-TATCAA-TTTCTATGAAATA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGTTGTTTTTTTTAAATCATTTGTGCCGAAAATATATTGTACTGTCAAGGGTGATCAACCCAAAACTATTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCGTTCCGGACTAACTTTATTCTTCTTAAAATATCTTTGGTCTAGTCACCAACCGTATTTCATCATGAAGGTAGATCTATATTGACGTACGCATTTAGTTTCAATATCGAATTAACCAGTGTAAATACAGTTACATGTCGTAAGAGAAAAATGACACGCCTCTGTGTACTGCTTTTACCGCTTGAACCGTCGAAAATAGTGAAACTTTCGCTTAACAAAAATGCGTCATGTTTTGA
Unaligned ( gi|8 ): CAGACGTATTTCTACCTAATGATGGATCTTGTGACACGTATTGACAATAACCAAGATTTAAAACATTGAACTAACCAGTGCAAACACAGAAACTGTTGCATATTGCAAGAGAAATGATAGAATCAGATGTCCATGCTTTTCTCGTATACACGTGTGGACACTTGAATCATTGATACAGAGGTCATTTT
Unaligned ( gi|10 ): GACGTATTTCCGCCTATTGGCAGATTAAGTGACATGTATTGATAAAGTGTTCAATGTAATGTAATGCAACAGAAATGGTCACATCAGATGTTTTGTGATAACACGTGTTGGTACTTCGAGAACGTGAGCATTTCCCTTGACAATTTCAGAGCGAACGTCGTTTTT
Unaligned ( gi|13 ): TATGTTCATTGCATATCAAAACATATGTTTTCTATACCAAACTAACCAGTATACCTACTGGTACCTGGGTAGAAATGGATGTCGTTATGTATTGCATTTACACATGTGTGCACATGAAGTAATAAAAAAGTGAATTTTCCC
Unaligned ( gi|16 ): GACAATAATTTATGTACTTTCTTGTGTTTATGCTAGAAAAAACACTCCTCCGACAGCTATTTTAGTGATTCCACCATGTGGTCATTAGTATATTTTCTGAAATGCACTGGGTACCTTTATCTAATAAAGATA
Unaligned ( gi|19 ): GCAATTTCCGGAATATGTACATGTATATTTGTCTTTAAATACTTTGTTTCAG
Unaligned ( gi|20 ): TTTAACATAGAACTGACCAGTTTAAATACCGTAACTGTTACATATTGCAA
Unaligned ( gi|21 ): TAGCCGTAAATTAAAACGTTTTCAGCTGACATTGAACATTT