lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222 2222 1 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 111 7777777777777 333333 111 1
lowQualScore : 1 3 55 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 4 1 9999 0 8888 3 4 0 99999999999 55 3333 7777 0 888 88 3 8 4 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 0 8 00 777 3333333333333 222222 666 6
lowQualScore : . . .. ....................................................................................................................................................................................... . . . .... . .... . . . ........... .. .... .... . ... .. . . . .................................................................................................................................................................................................................. . . . .. ... ............. ...... ... .
lowQualScore : 8 6 00 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 4 7 4444 9 5555 9 0 8 00000000000 55 1111 1111 8 222 77 3 2 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 2 8 88 222 5555555555555 555555 000 0
consensus : GCCGTATTAC-CGG--CAATCGCGATGGCAGAGGACGATCG-C---AG-GTG-AC------AGATACAA----GACGCNAGTTGACA----T-CTTGAGAGG-CTAA-GAT--ATTTCAACGA-T----A---A-------T----C-AGG--AAC---ANAACTTATNAA----------C-A-----A-----------TG---T----TTACT----AATGTTTA-TACA----TTGTAT----GGT-ACTTTTCTAGACTTTNTTA--TTCGNT-NTTTTAAGG--AAGATATCTCTACTTAAACGGCATNATTTAGATCGCGAACGCGTA-ATTCT----CATAT-TTGTTCTT-TAT-----GTCTCTNTA-TNA--GCATAATAACGGATTTG-TTAT-ACAA-A----ATATACAATTGGAGGGC--AATTATTCAGGGACGTCTCTT-CCA---AATTTNTNGTCCAN------NNT-GTNC-TT-T-ATAAGGAANA-C---GG--T-GC---TCCT------AT-ANGGNGCANGGGTAAAGGAAAA-TGGCAA-ACAAA-C-A----GT--NGGCAGATACNCTTGNTGACGCTACCGGCTATGA
Reference ( gi|3 ) : GCCGAATTAC-CGG--CAATCGCGATGACAGAGGACGATCG-C---AG-GTG-AC------AGAAACAA----GACACCAGCTGACA----T-CTCGAGAGG-GTAA-GGT--ATTTCAACGA-T----A---A-------T----C-AGG--AAC---AGAGTTTATCAA----------C-A-----A-----------TG---T----TTACT----AGTGTGTA-TGCA----TTGTAT----GGT-ACTTTTCTGGACTTTATTA--TTTGTT-GTTTTAAAA--AAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCGGAAATCCTAATGCATGTATTGTTCTT-TAT-----ATCTCTTTA-TAT--GCACAAAAACAGACTTG-TTAT-ACAATAG-ACATGTCCAATTGGATGGC--AATCATTCAAGAACATTTCCT-CTT---AATTTCTAGTCTAA------AG--GTTC-TT-T-ATAAGGAATA-C---AA--T-GT---TTCT------AT-ACGGATCAGGGGTAACGAAAAA-TGGCTA-ACAAA--------GT--TGGCAGATACGTTTGGTAAAGCTACAGGTTATGA
gi|2 : GCCGTAATAC-AGA--AAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT----------AGATACTA----GATAC-AATAGAC---------TGAGAGC-CAAA-GGT--ATTTCAACGA-T----A---AAACCCGTT----C---G--AACTTAAAAATGTAAAAG----------C-A-----GC----------TG---T----TTTTT----A-TGTCTA-TTCA----CTATAT----GGT-ATTTTTT---ACTTATTTA--TTTGAT-TTTTTAGGA--AAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTGTAAATTCTCA--CAT---TTACCTTT-TATTGAAAATCTCTGTA-TTA--GCATAATAACGAATTTG-CT-T-ATAAC----CTTTTACAATTG-----------------AG-ACGTCTGTT-CCA---AATTTATTGTCCAG------GT--GTTCTTT-T-ATAAGGACAA-C---GAGCT-GC---TCCT------GCAACTGA-CAGGGTTAACGAAAAC-TGGCAA-ACAAAACAAG---GTTATGGTAGATGCAC---GTAAAA-TACTGGCTAT
gi|5 : CCGTGTTAT-CGG--CAATCGCGATGGCAGCGGTTGATTG-CA--AG-ATA-ATAGATCGAGAAACAA----AACcttggcggccgatataatt
gi|19 : cactCCGTATTAC-CGG--CAATATCGATGACAGATAACGATTG-C---AG-TTG-AC------AGATACttatcaaaatgtaatagcacttgatgtatactaatgtttatacgttgtatgatatatttatatacgtttttttaaagaaaatatatctacatatacggcatccttcagatcgtaaacgtgttaatcgatatatttttctttatatctcttataactttaatggtgattaaataatgtacaactgaagcgctgaaattcagggacgtttcttccaaatttctagataatgtgtgatttaataagaaacacggtgtcttat
gi|18 : cacaCCGTATTACGCGG--CAATCAGGATAGCAGAAGACTAT---C---AGAGTA-GC------AGCTACAA----TACGATAGTTGACA----T-ATTGAGAGG-TTAA-
gi|11 : tcacaaaAATCAT-CGGGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATG-GC------AGATCCAA----GAAATGAGTTGACA----T-CTTGAGAGG-GTAA-AA---GTTTCGATGACT----AAAGA-------T----C-AAC--ATC---AGAACTTATTAA------------AGAATTA-----------TGACAT----TTGTTCTTGAATGTTTA-TACA----TTGAAT----GATGACATTT-TGGCC--CA--A--TATG-----TTTAAAG--AAGACATCTTTA
gi|4 : ATTAC-CGG--CAATCGCAATTATATAGGGCGATT----------------------------------ACACTTGTTG--------------GAGG-CTAA-GCT--ATTTCAACGA-T----A---A-------C----A-ATGTAAAT---GCAGCT-GT---------------------A-----------TG---G----TTACA----ATTGTTTA-TACA----TTGTAT----GAT-ACTTTTATATACATT--TA--CTCGTT--TTTTAAGG--AAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGC----------------GTACT-TTCTTATAT-----GTGTCTTTA-TGTTAGCACAAACAC-GATATGCTCAA-ACAAAA-------TACAATTGGAACGC--AGATATTTAGGGATCTTTGGT-CCA---AATGTATAACCCCA------CGT-GTCC-TT-T-ATATGGGATA-G---AA--TGGC---TCCT------AT-ATGAGACAGG
gi|17 : cacagtATTAC-AGG--CAATAGCGGTAGCAGAGGA-----G-C---TG-GTGCAT------AGAA--AA----G--ATCAGTTTGCA----CGCTTGAGTGG-CAGA-GAT--ATTCCAACGA-T----A---
gi|10 : cgcggtATTAT-CAA--CAATCACGATGACAGAAGGCAATCG-C---AG-
gi|1 : cacggtTTAA-TGG--CAATCGCGATGACAGAAGACGATCGAT---AT-ATG--C------ACATACAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGA-CCAA-AAC--ATGTCACTTA-A----A---C-------T----T-AGA--AAT---ATAATTTATTAA------------A-----A-----------TG---TAAAAGCACC----TGTTTGTA--ACAAATGTT-TAT----GTT-ACTTTTCTAGACATTTTTA--CTCGTT-TTTTTGATA--CAGATATCTGCACATAAACAGCATACTTTAGATCA------CATAAAT-------------TTGT-CTT-TAT-----ATCTCTTTATTAT-----------------CG-CTATTACAG------------AACTGGAGGGC--ATTTATT-AAGGA-ATTTCTTTCTTTCAAGTTTCTTGTCCACTTGTCCACTTGTCC-TTAT-ATAAGGAATA------G--T-GTGGCTCCT------TT-AAGGCGCGCGAGTAAAGGAAAAGTGGC-A-ATACA--------GT--GGGCAGATATTTTTGCTGACGCTATCGGTTATGAttatattaagagggaacattatttcagcaacaaaacttataaaaaacataaaagcactagcttgttcttgaatgtttatacattatgtgttactttattagttttgttcgtttttaaaggaagataaatgtttttaatcggaattgatgagatttcgaatg
gi|9 : cacacggtgTAC-CGG--CAATCGCAACGGCAGAGGACGATTG-C---AG-CTG---------AAAGATAT----GTCAACGATAGAAA----T-----AGATGCATAA-CTT--ATT--AAAAA-TGTAAA---A-------T----C-A------C---TT-GTTTCTTTA----------CGA-----A-----------TG---T----TTA-T----A-TATACA-TGTA----CTGTAT----GGT-ACTTTTCTATACTTTTTTA--TTTGAT-ATTTTcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|12 : ctattaC-CGG--CTATCGCGATGAAAGTGGACGA-CG----------A-AC------GCATACAA----TATGC------AC-----T-CTTGAGAGG-CTAG-GAT--ATTACAACGA-T----A---AAC-----A----C-AGG--AAC---AGATTCTATAAAAATG------T-A-----AGAGCACCTGTTTG---T----TTACG----AATGTTCACTG-A----TTGTGT----GGT-ACGTTTTAAGCCTTT-TTA--TTTGAG-ATTTTAAttagattgcgaccacactaattttcatacctgtcttta
gi|5 : tTCGCGATG-GCAGCGGTTGATTGCAA-GA-T----A---A-------TAGATCGAGA--AAC---AAAACTTATCAAAATGTAATAGC-ACTTG-A-----------TG---T----ATACT----AATGTTTA-TACG----TTGTAT----GAT-A------TA---TTTA-TA--TACGTT-TTTTTAAAG--AAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTG------TTAATCGATATATTTTTCTT-TAT-----ATCTC-TTA-TA-----ACTTTAATGG---TGATTA----AATA----ATGTACAACTGAAGCGCTGAA--ATTCAGGGACGTTTCTT-CCA---AATTTCTAG-ATAA------TGT-GTGA-TT-TAATAAGAAACA-C---GG--T-GT---CT-T------AT-g
gi|10 : cactccgtgttatcggcaa----AATGTTTA-TACA----TTATGT----G-------TT----ACTTTATTAGTTTTGTTCGTTTTTAAAGGAAGATA
gi|8 : cacggtattatcaacaatcacgatgacagaaggcaatcgcagttatattaagagggaacattatttcagcaacaaaacttataaaaaacataaaagcactagcttgttcttgTGTGTA-TGCA----TTATATACGTGAT-ACTTTTCTAGATTTT--TA--TTTAT--ATTTTGTGG--TTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCGTTTGTTCT----CTTAT-TTGTTA-T-TAT-----GTCTCTATG-TTA--GCATAATGACCGAATTA-TTAA-GCAG-AGCAAATATTCAG--AGATGGC--TAT--TCCAAaatgtttttaatcggaattgatgagatttcgaatg
gi|15 : atgatagcactcgtaaaagcagatattTAT----GGT-CCTTGTGTAGACTATTTTA--TTTGGT-CTTTTAAGA--AATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCATACATTTT----CATAT-TTG-TCTT-TAT-----GTTTCTGTA-TAA--GCAa
gi|6 : gtc--GTATAAAAACGGATTGA-TTAT-A-------GCGTATACAATTAGAAGGT--AATTATTTAGAGTCGTCTCTT-CAA---ACTGTCTGATCTAT------TT--GTACGTT-T-ATAAGAAAAAGCGTGAA--T-GT---T---------AA-AAGGTGCAATGATAAGAAAAAG-TGGCAA-ATAAACCTATCAGATA-TGGCAGATAC
gi|7 : ATATACAATTGGAGGGC--AATTATTCAAGGACGTCTCTT-TCA---AATTTGTAGTC-AATGT---AG--GTAT-TG-T-ATAA--AATT-T---AGT-T-GC---TCCTCCTTTAAT-A---A-CATGGGTTAAGGAAAA-CTGTTATACAAA--------GT--AGGagacaaattaatggctatcatagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC
Unaligned ( gi|16 ): TAGAGACGTATTTTCCAAATTTCTGGTCCATGTATTCTTTTAATACTTTTACAAAGTCTAGAGTGACTCTCACAAGAGGCAGGGGTTAGCAAAACTGGCAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888 0000000000000000000000000000000000000000000000000000000 11111111 1111111 1111111111111 222222222222222 11 11111 1 6666666666 444444444444444444444444444 1111111111 111111 11 4444444444444444 1
lowQualScore : 3 111111111111111111111111111111111111111111111111111 99 4 22 4 1111111111111111111111111111111111111111111111111111111 00000000 6666666 4 5555555555555 7777 0 6 4444 2 8 1 3 44 000000000000000 4 44 22222 7 1 2 0 88 4 9999 0 3 3333333333 1 1 11 66 6 0 66 66 1 1 888888888888888888888888888 5 5 1 9999999999 444444 88888 1 4 0 44 3 8 1111111111111111 999 1 0 5 3 0
lowQualScore : . ................................................... .. . .. . ....................................................... ........ ....... . ............. .... . . .... . . . . .. ............... . .. ..... . . . . .. . .... . . .......... . . .. .. . . .. .. . . ........................... . . . .......... ...... ..... . . . .. . . ................ ... . . . . .
lowQualScore : 6 222222222222222222222222222222222222222222222222222 66 0 33 0 1111111111111111111111111111111111111111111111111111111 99999999 6666666 0 5555555555555 7777 4 5 7777 3 1 0 6 88 999999999999999 4 22 55555 6 0 9 1 88 5 1111 0 2 2222222222 0 4 66 99 6 2 11 11 0 0 999999999999999999999999999 0 0 0 0000000000 444444 11111 0 0 7 88 5 0 6666666666666666 000 0 7 0 7 7
consensus : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TAA-------TCAGG--AAC---AGAACTTATNAA-----AA----------------TG---T----TTACT----AATGTTTATA-CA----T--------TGTAT----GGTACTTTTCTAGACTTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-A-TTCT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TTATA-CA--A----TATACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC----------TT-T-ATAAGGAATANAG--T-G-CTCCT------ATAAGGGGCAGGGGTAANGAAAAA-TGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGTAA-GCTACCGGTTATGA
Reference ( family-14 ) : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TAA-------TCAGG--AAC---ANAACTTATNAA----CAA----------------TG---T----TTACT----AATGTTTATA-CA----T--------TGTAT----GGTACTTTTCTAGACTTTNTTATTCGNTNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNATTTAGATCGCGAACGCG-T-A-A-TTCT----CATAT-TTGTTCTTTAT-----GTCTCTNTATNAGCATAAT-AACGGAT--TTG-TTATA-CAA-A---ATATACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTNTNGTCCA-------NNNT--GTNC----------TT-T-ATAAGGAANACGG--T-G-CTCCT------ATANGGNGCANGGGTAAAGGAAAA-TGGCAAAC-AAA-----CA--G-T--NGGCAGATACNCTTGNTGACGCTACCGGCTATGA
gi|1 : GTGTTAA-TGGCAATCGCGATGACAGAAGACGATCGAT---AT-ATG-CACATA---CAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGAC-CAAAAC-ATGTCACTTA-AAC-------TTAGA--AAT---ATAATTTATTAA-----AA----------------TG---TAAAAGCACC------TGTTTGTAACAAATGT--------T-TAT----GTTACTTTTCTAGACATTTTTACTCGTTTT-TTTGATACAGATATCTGCACATAAACAGCATACTTTAGATCACA-------T-A-A------------AT-TTGT-CTTTAT-----ATCTCTTTATTA-----------------TCG-CTAT-----------TACAGAACTGGAGGGC--ATTTATTAAGGAATTTCTTTCT--TTCAAGTTTCTTGTCCACTTGTCCACTT--GTCC----------TTAT-ATAAGGAATAGTG--TGG-CTCCT------TTAAGGCGCGCGAGTAAAGGAAAAGTGGCA----ATA-----CA--G-T--GGGCAGATATTTTTGCTGACGCTATCGGTTATGA
gi|10 : cacacgGTATTAT-CAACAATCACGATGACAGAAGGCAATCG-C---A-----------------------------GTT---A----T-ATTAAGAGGG--AACATTATTTCAGC--------------------AAC---AAAACTTATAAA----AAACATAAAAGCACTAGCTTG---T----T--CTTG--AATGTTTATA-CA----T--------TATGT----GTTACTTTATTAG----TTTTGTTCG-TTT-TTAAAGGAAGATAAATGTTTTTAATCGGAATTGATGAGATTTCGAATGcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|11 : cacgGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATGGCAGATC---CAA----GAAATGAGTTGACA----T-CTTGAGAGGG-TAAAA--GTTTCGATGACTAAAGA----TCAAC--ATC---AGAACTTATTAA----AGAATTA------------TGACAT----TTGTTCTTGAATGTTTATA-CA----T--------TGAAT----GAT---------GACATTTTGGCCCAATATGTTTAAAGAAGACATCTTTA
gi|12 : aatcatcggC-CGGCTATCGCGATGAAAGTGGACGA-CG----------AACGCATA---CAA----TATGC------AC-----T-CTTGAGAGGC-TAGGAT-ATTACAACGA-TAAAC-----ACAGG--AAC---AGATTCTATAAAAATGTAAGAGCACCTGTT-----TG---T----TTACG----AATGTTCACT-GA----T--------TGTGT----GGTACGTTT-TAAGCCTTTTTATTTGAGAT-TTTAAG
gi|15 : tTAT----GGTCCTTGTGTAGACTATTTTATTTGGTCT-TTTAAGAAATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCA-T-ACA-TTTT----CATAT-TTG-TCTTTAT-----GTTTCTGTATAAGCA
gi|16 : gtcAGAGACGTA--TTT--TCCAAATTTCTGGTCCA--------TGT--ATTCTTTTAATACTTT-T-ACAAAGTCTAGAG--T-GACTCTC------ACAAGAGGCAGGGGTTAGCAAAAC-TGGCAAA
gi|17 : tGCGGTATTAC-AGGCAATAGCGGTAGCAGAGGA-----G-C---TG-GTG-CATAGA---AAA----GA--TCAGTTTGCA----CGCTTGAGTGGC-AGAGAT-ATTCCAACGA-TA
gi|18 : cCCGTATTACGCGGCAATCAGGATAGCAGAAGACTAT---C---AGAGTAGCAGCTA---CAA----TACGATAGTTGACA----T-ATTGAGAGGT-TAA
gi|19 : tcacaaaCCGTATTAC-CGGCAATATCGATGACAGATAACGATTG-C---AG-TTGACAGATA---C
gi|2 : cacaGCCGTAATAC-AGAAAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT---AGATA---CTA----GATACAA-TAGAC---------TGAGAGCC-AAAGGT-ATTTCAACGA-TAAAACCCGTTC--G--AACTTAAAAATGTAAAAG----CAGC---------------TG---T----TTTTT----A-TGTCTATT-CA----C--------TATAT----GGTATTTTTT---ACTTATTTATTTGATTT-TTTAGGAAAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTG-TAA-A-TTCT----CACAT-TTACCTTTTATTGAAAATCTCTGTATTAGCATAAT-AACGAAT--TTGCTTATA--AC-C---TTTTACAATT------------------GAGACGTC--TGT--TCCAAATTTATTGTCCA--------GGT--GTTCT---------TT-T-ATAAGGACAACGAGCT-G-CTCCT------GCAACTGACAGGGTTAACGAAAAC-TGGCAAACAAAA-----CAAGG-TTATGGTAGATGCAC---GTAA-AATACTGGCTAT
gi|3 : GCCGAATTAC-CGGCAATCGCGATGACAGAGGACGATCG-C---AG-GTGACAGAAA---CAA----GACACCAGCTGACA----T-CTCGAGAGGG-TAAGGT-ATTTCAACGA-TAA-------TCAGG--AAC---AGAGTTTATCAA----CAA----------------TG---T----TTACT----AGTGTGTATG-CA----T--------TGTAT----GGTACTTTTCTGGACTTTATTATTTGTTGT-TTTAAAAAAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCG-GAA-A-TCCTAATGCATGTATTGTTCTTTAT-----ATCTCTTTATATGCACAAA-AACAGAC--TTG-TTATA-CAATAGACATGTCCAATTGGATGGC--AATCATTCAAGAACATT--TCC--TCTTAATTTCTAGTCTA-------AAG---GTTC----------TT-T-ATAAGGAATACAA--T-G-TTTCT------ATACGGATCAGGGGTAACGAAAAA-TGGCTAAC-AA-------A--G-T--TGGCAGATACGTTTGGTAAAGCTACAGGTTATGActtggcggccgatataatt
gi|4 : GTATTAC-CGGCAATCGCAATTATATAGGGCGAT------------------TA---CA---------CTTGTTG--------------GAGGC-TAAGCT-ATTTCAACGA-TAA-------CAATGTAAAT---GCAGC-TGT---------A----------------TG---G----TTACA----ATTGTTTATA-CA----T--------TGTAT----GATACTTTTATATACAT--TTACTCG-TTT-TTTAAGGAAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGCG-T-A-CTTTCT----TATAT-GTG-TCTTTAT-----G--------TTAGCACAAA-CAC-GAT--ATGCTCAAA-CAA-A-----ATACAATTGGAACGC--AGATATTTAGGGA--TC--TTTGGTCCAAATGTATAACCCC-------ACGT--GTCC----------TT-T-ATATGGGATAGAA--TGG-CTCCT------ATATGAGACAGG
gi|5 : cacaCCGTGTTAT-CGGCAATCGCGATGGCAGCGGTTGATTG-C---A-------AGATA---ATA----GA-------------------TCGAGAAAC--AAAAC-TTATCAA-----AA-------T--GT--AAT---AGCACTT----------GA----------------TG---T----ATACT----AATGTTTATA-CG----T--------TGTAT----GATA------TA---TTTA-TATACGTTTT-TTTAAAGAAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTGTT-A-A-TCGA----TATAT-TT-TTCTTTAT-----ATCTCT-TATAA-CTT--T-AATGG-----TG-AT-TA-AAT-A---ATGTACAACTGAAGCGCTGAA--ATTCAGGGACGTT--TCT--TCCAAATTTCTAG-ATA-------ATGT--GTGA----------TT-TAATAAGAAACACGG--T-G--TCTT------AT
gi|6 : cactGTATAAA-AACGGAT--TGA-TTATAGCG-------TATACAATTAGAAGGT--AATTATTTAGAGTCGTC--TCT--TCAAACTGTCTGATCTA--------TTT--GTACG---------TT-T-ATAAGAAAAAGCG--T-GAATGTT------AAAAGGTGCAATGATAAGAAAAAG-TGGCAAAT-AAACCTATCA--GATA-TGGCAGATAC
gi|7 : ----CATAT-TTAC-CTTTGT-----GCCTCTGTATTAACATAATGAAGGGATGATTA-TT-TA----------TATACAATTGGAGGGC--AATTATTCAAGGACGTC--TCT--TTCAAATTTGTAGT-CA-------ATGTAGGTAT----------TG-T-ATAA--AATTTAGT-T-G-CTCCTCCTTTAATAA----CATGGGTTAAGGAAAACTGTTATAC-AA-------A--G-T--AGGagacaaattaatggctatcatagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
gi|8 : gcctttttcaaatcactgtcgtgtacatacctatcaaTGTGTATG-CA----T--------TATATACGTGATACTTTTCTAGA--TTTTTATTT-ATAT-TTTGTGGTTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCG-T-TTG-TTCT----CTTAT-TTGTTATT-AT-----GTCTCTATGTTAGCATAAT-GACCGAA--TTA-TTAAG-C-------------------AGAGC--AAATATTCAGAGATGGC--TAT--TCCAAA
gi|9 : atgatagcactcgtaaaagcagatattTAC-CGGCAATCGCAACGGCAGAGGACGATTG-C---AG-CTGAAAGATATGTCA------ACGATA---GAAA----T-----AGATGCATAACTT-ATT--AAAAA-T------------GT--AAA---ATCACTTGTT-------------------------TC---T----TTACG----AATGTTTATA-TA----TACATGTACTGTAT----GGTACTTTTCTATACTTTTTTATTTGATAT-TTT
gi|9 : ctattaTTTAGATTGCGACCACACT-A-A-TTTT----CATAC-CTG-TCTTTAttagattgcgaccacactaattttcatacctgtcttta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666666666666666666666666666666 0000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111 1111111111111 2222222222222 11 11111 11111 1 3333333333333333 3333333333333333333333333333 1 11 111111 333333333333333 22222222 1
lowQualScore : 3 5555555555555555555555555555555555555555555555555555 99 4 22 1111111111111111111111111111111111111111111111111111111111111111111 00000000 6666666 4 5555555555555 7777 0 7777777 8 1 3 22 111 5 1111111111111 4 44 22222 7 3 0 77 00000 0 6666666666666666 1 11 66 6 0 66 66 1 4444444444444444444444444444 5 5 66 22 5 0 11 444444 7777 5 1 6 1 8 3 8 666666666666666 44444444 0 0 44
lowQualScore : . .................................................... .. . .. ................................................................... ........ ....... . ............. .... . ....... . . . .. ... . ............. . .. ..... . . . .. ..... . ................ . .. .. . . .. .. . ............................ . . .. .. . . .. ...... .... . . . . . . . ............... ........ . . ..
lowQualScore : 6 2222222222222222222222222222222222222222222222222222 66 0 33 5555555555555555555555555555555555555555555555555555555555555555555 99999999 6666666 0 5555555555555 7777 4 8888888 4 0 6 00 999 0 9999999999999 4 22 55555 6 6 1 88 55555 0 4444444444444444 4 66 99 6 2 11 11 2 0000000000000000000000000000 0 0 99 00 0 0 44 444444 1111 7 0 7 0 0 5 0 555555555555555 88888888 0 2 55
consensus : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCAGN--AACA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC----------TT-T-ATAAGG--AATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
Reference ( family-14 ) : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCAGG--AACA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACTTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC----------TT-T-ATAAGG--AATANAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AANGAAAAATGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGTTATGA
gi|1 : GTGTTAA-TGGCAATCGCGATGACAGAAGACGATCGAT---AT-ATG-CACATA---CAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGAC-CAAAAC-ATGTCACTTA-AA---C--TTAGA--AATA-----TAATTTA------TTAA-A-----A-----------------TG---TAAAAGCACC------TGTTTGTAACAAATGT--------T-TAT----GTTACTTTTCTAGACATTTTTACTCGTTTT-TTTGATACAGATATCTGCACATAAACAGCATACTTTAGAT------CACA-T-A-A------------AT-TTG-TCTTTAT-----ATCTCTTTATTA-----------------TCG-CT-AT-----TA------CAGAACTGGAGGGC--ATTTATTAAGGAATTTCTTTCT--TTCAAGTTTCTTGTCCACTTGTCCACTT--GTCC----------TTAT-ATAAGG--AATAGTG-TGG-CTCCT------TTAAGGCGCG-CGAGTAAAGGAAAAGTGGCA----ATA-----CA--G-T--GGGCAGATATTTTTGCT-GACGCTATCGGTTATGA
gi|10 : cacacgGTATTAT-CAACAATCACGATGACAGAAGGCAATCG-C---A-----------------------------GTT---A----T-ATTAAGAGGG--AACATTATTTCAGC------------------AACA-----AAACTTA------TAAA-A-----AACATAAAAGCACTAGCTTG---T----T--CTTG--AATGTTTAT-ACA----T--------TATGT----GTTACTTTATTAG----TTTTGTTCG-TTT-TTAAAGGAAGATAAATGTTTTTAATCGGAATTGATGAGATTTCGAATGcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|11 : cacgGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATGGCAGATC---CAA----GAAATGAGTTGACA----T-CTTGAGAGGG-TAAAA--GTTTCGATGACTAAAGA--TCAAC--ATCA-----GAACTTA------TTAA-AGAATTA-----------------TGACAT----TTGTTCTTGAATGTTTAT-ACA----T--------TGAAT----GAT---------GACATTTTGGCCCAATATGTTTAAAGAAGACATCTTTA
gi|12 : aatcatcggC-CGGCTATCGCGATGAAAGTGGACGA-CG----------AACGCATA---CAA----TATGC------AC-----T-CTTGAGAGGC-TAGGAT-ATTACAACGA-TA---AACACAGG--AACA-----GATTCTA------TAAA-A-----ATGTAAGAGCACCTGTT-TG---T----TTACG----AATGTTCAC-TGA----T--------TGTGT----GGTACGTTT-TAAGCCTTTTTATTTGAGAT-TTTAAG
gi|15 : tTAT----GGTCCTTGTGTAGACTATTTTATTTGGTCT-TTTAAGAAATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCA-T-ACATT-TT----CATAT-TTGT-CTTTAT-----GTTTCTGTATAAGCA
gi|16 : gtcAGAGACGTA--TTT--TCCAAATTTCTGGTCC--------ATGT--ATTCTTTTAATACTTT-T-ACAAAG--TCTAGAG-T-GACTCTC------ACAAGAGGCA-GGGGT-TAGCAAAACTGGCAAA
gi|17 : tGCGGTATTAC-AGGCAATAGCGGTAGCAGAGGA-----G-C---TG-GTG-CATAGA---AAA----GA--TCAGTTTGCA----CGCTTGAGTGGC-AGAGAT-ATTCCAACGA-TA---
gi|18 : cCCGTATTACGCGGCAATCAGGATAGCAGAAGACTAT---C---AGAGTAGCAGCTA---CAA----TACGATAGTTGACA----T-ATTGAGAGGT-TAA
gi|19 : tcacaaaCCGTATTAC-CGGCAATATCGATGACAGATAACGATTG-C---AG-TTGACAGATA---C
gi|2 : cacaGCCGTAATAC-AGAAAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT---AGATA---CTA----GATACAA-TAGAC---------TGAGAGCC-AAAGGT-ATTTCAACGA-TA---A---------AACCCGTTCGAACTTAAAAATGTAAA-A-----GCAGC-------------TG---T----TTTTT----A-TGTCTAT-TCA----C--------TATAT----GGTATTTTTT---ACTTATTTATTTGATTT-TTTAGGAAAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTG-TAA-ATT-CT----CACAT-TTACCTTTTATTGAAAATCTCTGTATTAGCATAAT-AACGAAT--TTGCTT-ATAACCTTT------TACAATT------------------GAGACGTC--TGT--TCCAAATTTATTGTCCA-------G-GT--GTTCT---------TT-T-ATAAGGACAACGAGC-T-G-CTCCT------GCAACTGACA-GGGTT-AACGAAAACTGGCAAACAAAA-----CAAGG-TTATGGTAGATGCAC---GT-AA-AATACTGGCTAT
gi|3 : GCCGAATTAC-CGGCAATCGCGATGACAGAGGACGATCG-C---AG-GTGACAGAAA---CAA----GACACCAGCTGACA----T-CTCGAGAGGG-TAAGGT-ATTTCAACGA-TA---A--TCAGG--AACA-----GAGTTTA------TCAACA-----A-----------------TG---T----TTACT----AGTGTGTAT-GCA----T--------TGTAT----GGTACTTTTCTGGACTTTATTATTTGTTGT-TTTAAAAAAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCG-GAA-ATC-CTAATGCATGTATTGTTCTTTAT-----ATCTCTTTATATGCACAAA-AACAGAC--TTG-TT-AT-ACAATAGACATGTCCAATTGGATGGC--AATCATTCAAGAACATT--TCC--TCTTAATTTCTAGTCTA-------AAG---GTTC----------TT-T-ATAAGG--AATACAA-T-G-TTTCT------ATACGGATCA-GGGGT-AACGAAAAATGGCTAAC-AA-------A--G-T--TGGCAGATACGTTTGGTAAA-GCTACAGGTTATGActtggcggccgatataatt
gi|4 : GTATTAC-CGGCAATCGCAATTATATAGGGCGAT------------------TA---CA---------CTTGTTG--------------GAGGC-TAAGCT-ATTTCAACGA-TA---A--CAATGTAAATG-----CAGCT-G------T----------A-----------------TG---G----TTACA----ATTGTTTAT-ACA----T--------TGTAT----GATACTTTTATATACATTT--ACTCG-TTT-TTTAAGGAAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGCG-T-A-CTTTCT----TATAT-GTGT-CTTTAT-----GT--------TAGCACAAA-CACG-AT--ATG-CTCAA-ACAAAA------TACAATTGGAACGC--AGATATTTAGGGA--TC--TTTGGTCCAAATGTATAACCCC-------ACGT--GTCC----------TT-T-ATATGG--GATAGAA-TGG-CTCCT------ATATGAGACA-GG
gi|5 : cacaCCGTGTTAT-CGGCAATCGCGATGGCA----------G-C---GG-TTGAT---TG---CAA----GATAATAG-----A----T-C--GAGAAAC--AAAAC-TTATCAA-----A---A--T--GT--AATA-----GCACTTG-----------------A-----------------TG---T----ATACT----AATGTTTAT-ACG----T--------TGTAT----GATA------TA----TTTATATACGTTTT-TTTAAAGAAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTG-TTA-ATC-GA----TATAT-TT-TTCTTTAT-----ATCTCT-TAT-AACTT--T-AATGG-----TGATT-AA-ATAATG------TACAACTGAAGCGCTGAA--ATTCAGGGACGTT--TCT--TCCAAATTTCTAG-ATA-------ATGT--GTGA----------TT-TAATAAGA--AACACGG-T-G--TCTT------AT
gi|6 : cactGTATAAA-AACGGAT--TGA-TT-AT-AGCGTA------TACAATTAGAAGGT--AATTATTTAGAGTCGTC--TCT--TCAAACTGTCTGATCT--------ATTT--GTACG---------TT-T-ATAAGA--AAAAGCG-T-GAATGTT------AAAAGGTGCA-ATGAT-AAGAAAAAGTGGCAAAT-AAACCTATCA--GATA-TGGCAGATACA---GAC-AA-ATTAATGGCTAT
gi|7 : ----CATAT-TTAC-CTTTGT-----GCCTCTGTATTAACATAATGAAGGGATGATTA-TT--T-A---TA------TACAATTGGAGGGC--AATTATTCAAGGACGTC--TCT--TTCAAATTTGTAGT-CA-------ATGTAGGTAT----------TG-T-ATAA----AATTTAGTT-G-CTCCTCCTTTAATAA----CATGGGTT-AAGGAAAACTGTTATAC-AAA-----catagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
gi|8 : gcctttttcaaatcactgtcgtgtacatacctatcaaTGTGTAT-GCA----T--------TATATACGTGATACTTTTCTAGA--TTTTTATTT-ATAT-TTTGTGGTTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCG-T-TTGTT-CT----CTTAT-TTGTTATT-AT-----GTCTCTATGTTAGCATAAT-GACCGAA--TTA-TT-AA-GC-------------------AGAGC--AAATATTCAGAGATGGC--TAT--TCCAAAgtagg
gi|9 : atgatagcactcgtaaaagcagatattTAC-CGGCAATCGCAACGGCAGAGGACGATTG-C---AG-CTGAAAGATATGTCA------ACGATA---GAAA----T-----AGATGCATAACTT-ATT--AAAAA-T----------GT--AAAA-----TCACTTG------TT---------------------------TC---T----TTACG----AATGTTTAT-ATA----TACATGTACTGTAT----GGTACTTTTCTATACTTTTTTATTTGATAT-TTT
gi|9 : ctattaTTTAGATTGCGACCACACT-A-ATT-TT----CATAC-CTG-TCTTTAttagattgcgaccacactaattttcatacctgtcttta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111 1111111111111 2222222222222 11 11111 11111 1 3333333333333333 22222222222222 1 2222222222 111111 111111 333333333333333 22222222 1
lowQualScore : 3 111111111111111111111111111111111111111111111111111 99 4 3 0000000000000000000000000000000000000000000000000000000000000000000000 00000000 6666666 4 5555555555555 7777 0 6 0 3 1 8 2 3 22 111 5 1111111111111 4 44 22222 7 3 0 77 00000 0 6666666666666666 1 11 66 6 0 66 66 1 33333333333333 1 0 5 6666666666 5 222222 444444 7777 5 1 6 1 3 8 666666666666666 44444444 0 0 44
lowQualScore : . ................................................... .. . . ...................................................................... ........ ....... . ............. .... . . . . . . . . .. ... . ............. . .. ..... . . . .. ..... . ................ . .. .. . . .. .. . .............. . . . .......... . ...... ...... .... . . . . . . ............... ........ . . ..
lowQualScore : 6 000000000000000000000000000000000000000000000000000 66 0 2 8888888888888888888888888888888888888888888888888888888888888888888888 99999999 6666666 0 5555555555555 7777 4 5 5 5 0 2 3 6 00 999 0 9999999999999 4 22 55555 6 6 1 88 55555 0 4444444444444444 4 66 99 6 2 11 11 2 00000000000000 0 0 0 9999999999 0 444444 444444 1111 7 0 7 0 5 0 555555555555555 88888888 0 2 55
consensus : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
Reference ( family-14 ) : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
gi|1 : GTGTTAA-TGGCAATCGCGATGACAGAAGACGATCGAT---AT-ATG-CACATA---CAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGAC-CAAAAC-ATGTCACTTA-AA---C--TTA--GAAA---TA-----TAATTTA------TTAA-A-----A-----------------TG---TAAAAGCACC------TGTTTGTAACAAATGT--------T-TAT----GTTACTTTTCTAGACATTTTTACTCGTTTT-TTTGATACAGATATCTGCACATAAACAGCATACTTTAGAT------CACA-T-A-A------------AT-TTG-TCTTTAT-----ATCTCTTTATTA-----------------TCG-CT-AT-----TA------CAGAACTGGAGGGC--ATTTATTAAGGAATTTCTTTCT--TTCAAGTTTCTTGTCCACTTGTCCACTT--GTCC-TTAT----------ATAAGGA-ATAGTG-TGG-CTCCT------TTAAGGCGCG-CGAGTAAAGGAAAAGTGGCA----ATA-----CA--G-T--GGGCAGATATTTTTGCT-GACGCTATCGGTTATGA
gi|10 : cacacgGTATTAT-CAACAATCACGATGACAGAAGGCAATCG-C--------------------------------AGTT---A----T-ATTAAGAGGG--AACATTATTTCA------------------GCAA---CA-----AAACTTA------TAAA-A-----AACATAAAAGCACTAGCTTG---T----T--CTTG--AATGTTTAT-ACA----T--------TATGT----GTTACTTTATTAG----TTTTGTTCG-TTT-TTAAAGGAAGATAAATGTTTTTAATCGGAATTGATGAGATTTCGAATGcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|11 : cacgGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATGGCAGATC---CAA----GAAATGAGTTGACA----T-CTTGAGAGGG-TAAAA--GTTTCGATGACTAAAGA--TCA--ACAT---CA-----GAACTTA------TTAA-AGAATTA-----------------TGACAT----TTGTTCTTGAATGTTTAT-ACA----T--------TGAAT----GAT---------GACATTTTGGCCCAATATGTTTAAAGAAGACATCTTTA
gi|12 : aatcatcggC-CGGCTATCGCGATGAAAGTGGACGA-CG----------AACGCATA---CAA----TATGC------AC-----T-CTTGAGAGGC-TAGGAT-ATTACAACGA-TA---AACACA--GGAA---CA-----GATTCTA------TAAA-A-----ATGTAAGAGCACCTGTT-TG---T----TTACG----AATGTTCAC-TGA----T--------TGTGT----GGTACGTTT-TAAGCCTTTTTATTTGAGAT-TTTAAG
gi|15 : tTAT----GGTCCTTGTGTAGACTATTTTATTTGGTCT-TTTAAGAAATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCA-T-ACATT-TT----CATAT-TTGT-CTTTAT-----GTTTCTGTATAAGCA
gi|16 : gtcAGAGACGTA--TTT--TCCAAATTTCTGGTCCA--------TGT--ATTC-TT-TTAATACTTTTACAAAGT-CTAGAG-T-GACTCTC------ACAAGAGGCA-GGGGT-TAGCAAAACTGGCAAA
gi|17 : tGCGGTATTAC-AGGCAATAGCGGTAGCAGAGGA-----G-C---TG-GTG-CATAGA---AAA----GA--TCAGTTTGCA----CGCTTGAGTGGC-AGAGAT-ATTCCAACGA-TA---
gi|18 : cCCGTATTACGCGGCAATCAGGATAGCAGAAGACTAT---C---AGAGTAGCAGCTA---CAA----TACGATAGTTGACA----T-ATTGAGAGGT-TAA
gi|19 : tcacaaaCCGTATTAC-CGGCAATATCGATGACAGATAACGATTG-C---AG-TTGACAGATA---C
gi|2 : cacaGCCGTAATAC-AGAAAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT---AGATA---CTA----GATACAA-TAGAC---------TGAGAGCC-AAAGGT-ATTTCAACGA-TA---A---------AA---CCCGTTCGAACTTAAAAATGTAAA-A-----GCAGC-------------TG---T----TTTTT----A-TGTCTAT-TCA----C--------TATAT----GGTATTTTTT---ACTTATTTATTTGATTT-TTTAGGAAAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTG-TAA-ATT-CT----CACAT-TTACCTTTTATTGAAAATCTCTGTATTAGCATAAT-AACGAAT--TTGCTT-ATAACCTTT------TACAATT------------------GAGACGTC--TGT--TCCAAATTTATTGTCCA-------G-GT--GTTCTTT-T----------ATAAGGACAACGAGCT-G-CTCCT------GCAACTGACA-GGGTT-AACGAAAACTGGCAAACAAAA-----CAAGG-TTATGGTAGATGCAC---GT-AA-AATACTGGCTAT
gi|3 : GCCGAATTAC-CGGCAATCGCGATGACAGAGGACGATCG-C---AG-GTGACAGAAA---CAA----GACACCAGCTGACA----T-CTCGAGAGGG-TAAGGT-ATTTCAACGA-TA---A--TCA--GGAA---CA-----GAGTTTA------TCAACA-----A-----------------TG---T----TTACT----AGTGTGTAT-GCA----T--------TGTAT----GGTACTTTTCTGGACTTTATTATTTGTTGT-TTTAAAAAAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCG-GAA-ATC-CTAATGCATGTATTGTTCTTTAT-----ATCTCTTTATATGCACAAA-AACAGAC--TTG-TT-AT-ACAATAGACATGTCCAATTGGATGGC--AATCATTCAAGAACATT--TCC--TCTTAATTTCTAGTCTA-------AAG---GTTC-TT-T----------ATAAGGA-ATACAA-T-G-TTTCT------ATACGGATCA-GGGGT-AACGAAAAATGGCTAAC-AA-------A--G-T--TGGCAGATACGTTTGGTAAA-GCTACAGGTTATGActtggcggccgatataatt
gi|4 : GTATTAC-CGGCAATCGCAATTATATAGGGCGAT------------------TA---CA---------CTTGTTG--------------GAGGC-TAAGCT-ATTTCAACGA-TA---A---CAATGTAAATGCA-----G---CTG------T----------A-----------------TG---G----TTACA----ATTGTTTAT-ACA----T--------TGTAT----GATACTTTTATATACATTT--ACTCG-TTT-TTTAAGGAAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGCG-T-A-CTTTCT----TATAT-GTGT-CTTTAT-----GT--------TAGCACAAA-CACG-AT--ATG-CTCAA-ACAAAA------TACAATTGGAACGC--AGATATTTAGGGA--TC--TTTGGTCCAAATGTATAACCCC-------ACGT--GTCC-TT-T----------ATATGGG-ATAGAA-TGG-CTCCT------ATATGAGACA-GG
gi|5 : cacaCCGTGTTAT-CGGCAATCGCGATGGCAGCGGTTGATTG-C---A-------AGATA---ATA----GA-------------------TCGAGAAAC--AAAAC-TTATCAA-----A---A--T----GTAA---TA-----GCACTTG-----------------A-----------------TG---T----ATACT----AATGTTTAT-ACG----T--------TGTAT----GATATATTTATATACGTTTTT-----------TTAAAGAAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTG-TTA-ATC-GA----TATAT-TT-TTCTTTAT-----ATCTCT-TAT-AACTT--T-AATGG-----TGATT-AA-ATAATG------TACAACTGAAGCGCTGAA--ATTCAGGGACGTT--TCT--TCCAAATTTCTAG-ATA-------ATGT--GTGA-TT-TA---------ATAAGAA-ACACGG-T-G--TCTT------AT
gi|6 : cactGTATAAA-AACGGAT--TGA-TT-AT-AGCGTA------TACAATTAGAAGGT--AATTATTTAGAGTCGTC--TCT--TCAAACTGTCTGATCT--------ATTT--GTACGTT-T----------ATAAGAA-AAAGCG-T-GAATGTT------AAAAGGTGCA-ATGAT-AAGAAAAAGTGGCAAAT-AAACCTATCA--GATA-TGGCAGATACA---GAC-AA-ATTAATGGCTAT
gi|7 : ----CATAT-TTAC-CTTTGT-----GCCTCTGTATTAACATAATGAAGGGATGATTA-TT--T-A---TA------TACAATTGGAGGGC--AATTATTCAAGGACGTC--TCT--TTCAAATTTGTAGT-CA-------ATGTAGGTAT-TG-T----------ATAA--A-ATTTAGTT-G-CTCCTCCTTTAATAA----CATGGGTT-AAGGAAAACTGTTATAC-AAA-----catagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
gi|8 : gcctttttcaaatcactgtcgtgtacatacctatcaaTGTGTAT-GCA----T--------TATATACGTGATACTTTTCTAGA--TTTTTATTT-ATAT-TTTGTGGTTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCG-T-TTGTT-CT----CTTAT-TTGTTATT-AT-----GTCTCTATGTTAGCATAAT-GACCGAA--TTA-TT-AA-GC-------------------AGAGC--AAATATTCAGAGATGGC--TAT--TCCAAAgtagg
gi|9 : atgatagcactcgtaaaagcagatattTAC-CGGCAATCGCAACGGCAGAGGACGATTG-C---AG-CTGAAAGATATGTCA------ACGATA---GAAA----T-----AGATGCATAACTT-ATT--AAAAA-T------------GTAA---AA-----TCACTTG------TT---------------------------TC---T----TTACG----AATGTTTAT-ATA----TACATGTACTGTAT----GGTACTTTTCTATACTTTTTTATTTGATAT-TTT
gi|9 : ctattaTTTAGATTGCGACCACACT-A-ATT-TT----CATAC-CTG-TCTTTAttagattgcgaccacactaattttcatacctgtcttta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111 1111111111111 2222222222222 11 11111 11111 1 3333333333333333 22222222222222 1 2222222222 111111 111111 333333333333333 22222222 1
lowQualScore : 3 111111111111111111111111111111111111111111111111111 99 4 3 0000000000000000000000000000000000000000000000000000000000000000000000 00000000 6666666 4 5555555555555 7777 0 6 0 3 1 8 2 3 22 111 5 1111111111111 4 44 22222 7 3 0 77 00000 0 6666666666666666 1 11 66 6 0 66 66 1 33333333333333 1 0 5 6666666666 5 222222 444444 7777 5 1 6 1 3 8 666666666666666 44444444 0 0 44
lowQualScore : . ................................................... .. . . ...................................................................... ........ ....... . ............. .... . . . . . . . . .. ... . ............. . .. ..... . . . .. ..... . ................ . .. .. . . .. .. . .............. . . . .......... . ...... ...... .... . . . . . . ............... ........ . . ..
lowQualScore : 6 000000000000000000000000000000000000000000000000000 66 0 2 8888888888888888888888888888888888888888888888888888888888888888888888 99999999 6666666 0 5555555555555 7777 4 5 5 5 0 2 3 6 00 999 0 9999999999999 4 22 55555 6 6 1 88 55555 0 4444444444444444 4 66 99 6 2 11 11 2 00000000000000 0 0 0 9999999999 0 444444 444444 1111 7 0 7 0 5 0 555555555555555 88888888 0 2 55
consensus : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
Reference ( family-14 ) : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
gi|1 : GTGTTAA-TGGCAATCGCGATGACAGAAGACGATCGAT---AT-ATG-CACATA---CAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGAC-CAAAAC-ATGTCACTTA-AA---C--TTA--GAAA---TA-----TAATTTA------TTAA-A-----A-----------------TG---TAAAAGCACC------TGTTTGTAACAAATGT--------T-TAT----GTTACTTTTCTAGACATTTTTACTCGTTTT-TTTGATACAGATATCTGCACATAAACAGCATACTTTAGAT------CACA-T-A-A------------AT-TTG-TCTTTAT-----ATCTCTTTATTA-----------------TCG-CT-AT-----TA------CAGAACTGGAGGGC--ATTTATTAAGGAATTTCTTTCT--TTCAAGTTTCTTGTCCACTTGTCCACTT--GTCC-TTAT----------ATAAGGA-ATAGTG-TGG-CTCCT------TTAAGGCGCG-CGAGTAAAGGAAAAGTGGCA----ATA-----CA--G-T--GGGCAGATATTTTTGCT-GACGCTATCGGTTATGA
gi|10 : cacacgGTATTAT-CAACAATCACGATGACAGAAGGCAATCG-C--------------------------------AGTT---A----T-ATTAAGAGGG--AACATTATTTCA------------------GCAA---CA-----AAACTTA------TAAA-A-----AACATAAAAGCACTAGCTTG---T----T--CTTG--AATGTTTAT-ACA----T--------TATGT----GTTACTTTATTAG----TTTTGTTCG-TTT-TTAAAGGAAGATAAATGTTTTTAATCGGAATTGATGAGATTTCGAATGcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|11 : cacgGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATGGCAGATC---CAA----GAAATGAGTTGACA----T-CTTGAGAGGG-TAAAA--GTTTCGATGACTAAAGA--TCA--ACAT---CA-----GAACTTA------TTAA-AGAATTA-----------------TGACAT----TTGTTCTTGAATGTTTAT-ACA----T--------TGAAT----GAT---------GACATTTTGGCCCAATATGTTTAAAGAAGACATCTTTA
gi|12 : aatcatcggC-CGGCTATCGCGATGAAAGTGGACGA-CG----------AACGCATA---CAA----TATGC------AC-----T-CTTGAGAGGC-TAGGAT-ATTACAACGA-TA---AACACA--GGAA---CA-----GATTCTA------TAAA-A-----ATGTAAGAGCACCTGTT-TG---T----TTACG----AATGTTCAC-TGA----T--------TGTGT----GGTACGTTT-TAAGCCTTTTTATTTGAGAT-TTTAAG
gi|15 : tTAT----GGTCCTTGTGTAGACTATTTTATTTGGTCT-TTTAAGAAATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCA-T-ACATT-TT----CATAT-TTGT-CTTTAT-----GTTTCTGTATAAGCA
gi|16 : gtcAGAGACGTA--TTT--TCCAAATTTCTGGTCCA--------TGT--ATTC-TT-TTAATACTTTTACAAAGT-CTAGAG-T-GACTCTC------ACAAGAGGCA-GGGGT-TAGCAAAACTGGCAAA
gi|17 : tGCGGTATTAC-AGGCAATAGCGGTAGCAGAGGA-----G-C---TG-GTG-CATAGA---AAA----GA--TCAGTTTGCA----CGCTTGAGTGGC-AGAGAT-ATTCCAACGA-TA---
gi|18 : cCCGTATTACGCGGCAATCAGGATAGCAGAAGACTAT---C---AGAGTAGCAGCTA---CAA----TACGATAGTTGACA----T-ATTGAGAGGT-TAA
gi|19 : tcacaaaCCGTATTAC-CGGCAATATCGATGACAGATAACGATTG-C---AG-TTGACAGATA---C
gi|2 : cacaGCCGTAATAC-AGAAAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT---AGATA---CTA----GATACAA-TAGAC---------TGAGAGCC-AAAGGT-ATTTCAACGA-TA---A---------AA---CCCGTTCGAACTTAAAAATGTAAA-A-----GCAGC-------------TG---T----TTTTT----A-TGTCTAT-TCA----C--------TATAT----GGTATTTTTT---ACTTATTTATTTGATTT-TTTAGGAAAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTG-TAA-ATT-CT----CACAT-TTACCTTTTATTGAAAATCTCTGTATTAGCATAAT-AACGAAT--TTGCTT-ATAACCTTT------TACAATT------------------GAGACGTC--TGT--TCCAAATTTATTGTCCA-------G-GT--GTTCTTT-T----------ATAAGGACAACGAGCT-G-CTCCT------GCAACTGACA-GGGTT-AACGAAAACTGGCAAACAAAA-----CAAGG-TTATGGTAGATGCAC---GT-AA-AATACTGGCTAT
gi|3 : GCCGAATTAC-CGGCAATCGCGATGACAGAGGACGATCG-C---AG-GTGACAGAAA---CAA----GACACCAGCTGACA----T-CTCGAGAGGG-TAAGGT-ATTTCAACGA-TA---A--TCA--GGAA---CA-----GAGTTTA------TCAACA-----A-----------------TG---T----TTACT----AGTGTGTAT-GCA----T--------TGTAT----GGTACTTTTCTGGACTTTATTATTTGTTGT-TTTAAAAAAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCG-GAA-ATC-CTAATGCATGTATTGTTCTTTAT-----ATCTCTTTATATGCACAAA-AACAGAC--TTG-TT-AT-ACAATAGACATGTCCAATTGGATGGC--AATCATTCAAGAACATT--TCC--TCTTAATTTCTAGTCTA-------AAG---GTTC-TT-T----------ATAAGGA-ATACAA-T-G-TTTCT------ATACGGATCA-GGGGT-AACGAAAAATGGCTAAC-AA-------A--G-T--TGGCAGATACGTTTGGTAAA-GCTACAGGTTATGActtggcggccgatataatt
gi|4 : GTATTAC-CGGCAATCGCAATTATATAGGGCGAT------------------TA---CA---------CTTGTTG--------------GAGGC-TAAGCT-ATTTCAACGA-TA---A---CAATGTAAATGCA-----G---CTG------T----------A-----------------TG---G----TTACA----ATTGTTTAT-ACA----T--------TGTAT----GATACTTTTATATACATTT--ACTCG-TTT-TTTAAGGAAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGCG-T-A-CTTTCT----TATAT-GTGT-CTTTAT-----GT--------TAGCACAAA-CACG-AT--ATG-CTCAA-ACAAAA------TACAATTGGAACGC--AGATATTTAGGGA--TC--TTTGGTCCAAATGTATAACCCC-------ACGT--GTCC-TT-T----------ATATGGG-ATAGAA-TGG-CTCCT------ATATGAGACA-GG
gi|5 : cacaCCGTGTTAT-CGGCAATCGCGATGGCAGCGGTTGATTG-C---A-------AGATA---ATA----GA-------------------TCGAGAAAC--AAAAC-TTATCAA-----A---A--T----GTAA---TA-----GCACTTG-----------------A-----------------TG---T----ATACT----AATGTTTAT-ACG----T--------TGTAT----GATATATTTATATACGTTTTT-----------TTAAAGAAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTG-TTA-ATC-GA----TATAT-TT-TTCTTTAT-----ATCTCT-TAT-AACTT--T-AATGG-----TGATT-AA-ATAATG------TACAACTGAAGCGCTGAA--ATTCAGGGACGTT--TCT--TCCAAATTTCTAG-ATA-------ATGT--GTGA-TT-TA---------ATAAGAA-ACACGG-T-G--TCTT------AT
gi|6 : cactGTATAAA-AACGGAT--TGA-TT-AT-AGCGTA------TACAATTAGAAGGT--AATTATTTAGAGTCGTC--TCT--TCAAACTGTCTGATCT--------ATTT--GTACGTT-T----------ATAAGAA-AAAGCG-T-GAATGTT------AAAAGGTGCA-ATGAT-AAGAAAAAGTGGCAAAT-AAACCTATCA--GATA-TGGCAGATACA---GAC-AA-ATTAATGGCTAT
gi|7 : ----CATAT-TTAC-CTTTGT-----GCCTCTGTATTAACATAATGAAGGGATGATTA-TT--T-A---TA------TACAATTGGAGGGC--AATTATTCAAGGACGTC--TCT--TTCAAATTTGTAGT-CA-------ATGTAGGTAT-TG-T----------ATAA--A-ATTTAGTT-G-CTCCTCCTTTAATAA----CATGGGTT-AAGGAAAACTGTTATAC-AAA-----catagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
gi|8 : gcctttttcaaatcactgtcgtgtacatacctatcaaTGTGTAT-GCA----T--------TATATACGTGATACTTTTCTAGA--TTTTTATTT-ATAT-TTTGTGGTTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCG-T-TTGTT-CT----CTTAT-TTGTTATT-AT-----GTCTCTATGTTAGCATAAT-GACCGAA--TTA-TT-AA-GC-------------------AGAGC--AAATATTCAGAGATGGC--TAT--TCCAAAgtagg
gi|9 : atgatagcactcgtaaaagcagatattTAC-CGGCAATCGCAACGGCAGAGGACGATTG-C---AG-CTGAAAGATATGTCA------ACGATA---GAAA----T-----AGATGCATAACTT-ATT--AAAAA-T------------GTAA---AA-----TCACTTG------TT---------------------------TC---T----TTACG----AATGTTTAT-ATA----TACATGTACTGTAT----GGTACTTTTCTATACTTTTTTATTTGATAT-TTT
gi|9 : ctattaTTTAGATTGCGACCACACT-A-ATT-TT----CATAC-CTG-TCTTTAttagattgcgaccacactaattttcatacctgtcttta
blockSeqs : G CACAGATGGCAGATCCAAGAAATGAGTTGACATC AT T T TAAACACAGGAACAGATTCTATAAAAATGTAAGAGCACCTGTT ACAT TCTTGAA . TACATGTAC ACGT T A C A T G TG TTC C AAATCCTAATG A CC TGAAA G A TG GATGA C ATACAATAGACATG G TG TG T . GG G AATGTAG T T . TAATACTTTT C TGAC CCTTTA GAGG T G . C A A ACCTATCAGATA GTTTGGTA . CT
blockSeqs : . CGCAGGTGACAGAAACAAGACACCAGCTGACATC T . C GCAACAAAACTTATAAAAAACATAAAAGCACTAGCT T TTGAA . T . G C C A A . TA CAG . ACATTTT . TT . G T T AAT A ATAACCTTT G AC . A . . T CACGT T G . A . CTGC . CTGA . T . C A . ACAAGGTTA ACGT . CA
blockSeqs : . CAGAGTAGCAGCTACAATACGATAGTTGACATA T . C TAAAACCCGTTCGAACTTAAAAATGTAAAAGCAGC T GAA . T . T T T G A . AG CGT . AAATTCT . TT . T A A GAC . CAAACAAAA G GC . T . . A AATGT T . . . . TGGC . GGAT . G . A A . AGT AGAC . AT
blockSeqs : . GCTGGTGCATAGAAAAGATCAGTTTGCACGC A . C CTAAAGATCAACATCAGAACTTATTAAAGAATTA T TAG . T . C T T A C . GC CGT . ACTTTCT . TT . G T A GAT . AAATAATG A AG . T . . A ATGT C . . . . TGAA . GAGA . A . G A .
blockSeqs : . TGCAGCTGAAAGATATGTCAACGATAGAAAT T . C TAATCAGGAACAGAGTTTATCAACAA T AAT . C . A T T T T . TA TTC . TAATCGA . T . A T T GAA . ATAGCGTA G GG . A . . A AGGT G . . . . TTGC . GGTG . T . C T
blockSeqs : . CATTATAAGTAGATACTAGATACAATAGAC A . C TAACAATGTAAATGCAGCTGTA G TAA . T . A A T A G . CC CGT . TTGTTCT . T . . T A AT . TATA . GA . . . . G AAAG A . . . . TGT . . .
blockSeqs : . CGAACGCATACAATATGCACTC T . A AATGTAATAGCACTTGA T GAA . T . C G C A T . TA CGC . AATTTT . C . . . T G . AAGC . . . . . . A ATTT A . . . . TG .
blockSeqs : . TGCAAGATAATAGA T . . TGTAAAATCACTTGTT T TA . T . C T T . A . TGC . T . .
blockSeqs : . TACACTTGTTG . . . . T . . . T . A .
blockSeqs : . CGCAGTTATA . . . . . . . .
blockSeqCons : T******* NAA**** T************ CGC ACGTTCT****** T* N* GAT** AAATAACG******** ** ANGT**********
originalCons : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTACT----AATGTTTAT-ACA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T-A-ATT-CT----CATAT-TTGTTCTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TT-AT-ACAATA------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCA-------ACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
finalCons : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TGT-------TTACNAA----TGTTTAT-ACAT------------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-TACGTTCT------CATAT-TTGT-CTTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TTAAATAACG--------TACAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCTAGTCCANGT----------GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111111111111 222222222222222222 11111 444444444444444444444444 111111111 1 2222222222 111111 111111 333333333333333 22222222 1
lowQualScore : 3 111111111111111111111111111111111111111111111111111 99 4 3 0000000000000000000000000000000000000000000000000000000000000000000000 00000000 9999 1 3 4 5555555555555 7777 0 6 0 3 1 8 2 3 22 3 1 888888888888888888 4 4 4 22222 7 3 0 77 4 9999 999999999999999999999999 11 66 6 0 66 66 999999999 5 0 1 66 1 0 5 6666666666 5 222222 444444 7777 5 1 6 1 3 8 666666666666666 44444444 0 0 44
lowQualScore : . ................................................... .. . . ...................................................................... ........ .... . . . ............. .... . . . . . . . . .. . . .................. . . . ..... . . . .. . .... ........................ .. .. . . .. .. ......... . . . .. . . . .......... . ...... ...... .... . . . . . . ............... ........ . . ..
lowQualScore : 6 000000000000000000000000000000000000000000000000000 66 0 2 8888888888888888888888888888888888888888888888888888888888888888888888 99999999 4444 0 7 0 5555555555555 7777 4 5 5 5 0 2 3 6 00 2 4 444444444444444444 4 4 4 55555 6 6 1 88 5 1111 999999999999999999999999 66 99 6 2 11 11 222222222 0 2 0 99 0 0 0 9999999999 0 444444 444444 1111 7 0 7 0 5 0 555555555555555 88888888 0 2 55
consensus : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTA----CGAATGTTTATA-CA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATTNTTTAGATCGCGAACGCG-T--A-CAT-TCT-----CATAT-TTG-TC-TTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TTA---AATA---AC---GTA--CAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCT-----A---G-TCCACGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
Reference ( family-14 ) : GCCGTATTAC-CGGCAATCGCGATGGCAGAGGACGATCG-C---AG-GTGACAGATA---CAA----GACGCNAGTTGACA----T-CTTGAGAGGC-TAAGAT-ATTTCAACGA-TA---A--TCA--GNAA---CA-----GAACTTA------TNAA-A-----A-----------------TG---T----TTA----CNAATGTTTATA-CA----T--------TGTAT----GGTACTTTTCTAGACNTTTTTATTCGATNT-TTTAAGGAAGATATCTCTACTTAAACGGCATNNTTTAGATCGCGAACGCG-T--A-CGT-TCT-----CATAT-TTG-TC-TTTAT-----GTCTCTGTATTAGCATAAN-AACGGAT--TTG-TTA---AATA---AC---GTA--CAATTGGAGGGC--AATTATTCAGGGACGTC--TCT--TCCAAATTTCT-----A---G-TCCANGT--GTNC-TT-T----------ATAAGGA-ATAGAG-T-G-CTCCT------ATAAGGGGCA-GGGGT-AAGGAAAANTGGCAAAC-AAA-----CA--G-T--TGGCAGATACGTTTGGT-AA-GCTACCGGCTATGA
gi|1 : GTGTTAA-TGGCAATCGCGATGACAGAAGACGATCGAT---AT-ATG-CACATA---CAATCGCGTTGTAAGATGAAAGAAGT-CTTGATAGAC-CAAAAC-ATGTCACTTA-AA---C--TTA--GAAA---TA-----TAATTTA------TTAA-A-----A-----------------TG---TAAAAGCA----CC--TGTTTGTAACAAATGT--------T-TAT----GTTACTTTTCTAGACATTTTTACTCGTTTT-TTTGATACAGATATCTGCACATAAACAGCATACTTTAGATC-------------A-CAT----------AAAT-TTG-TC-TTTAT-----ATCTCTTTATTA-----------------TCG-CT-----ATT---AC-----A--GAACTGGAGGGC--ATTTATTAAGGAATTTCTTTCT--TTCAAGTTTCTTGTCCACTTG-TCCACTT--GTCC-TTAT----------ATAAGGA-ATAGTG-TGG-CTCCT------TTAAGGCGCG-CGAGTAAAGGAAAAGTGGCA----ATA-----CA--G-T--GGGCAGATATTTTTGCT-GACGCTATCGGTTATGA
gi|10 : cacacgGTATTAT-CAACAATCACGATGACAGAAGGCAATCG-C--------------------------------AGTT---A----T-ATTAAGAGGG--AACATTATTTCA------------------GCAA---CA-----AAACTTA------TAAA-A-----AACATAAAAGCACTAGCTTG---T----TCT----TGAATGTTTATA-CA----T--------TATGT----GTTACTTTATTAG----TTTTGTTCG-TTT-TTAAAGGAAGATAAATGTTTTTAATCGGAATTGATGAGATTTCGAATGcagaaacagacacagttatggctgtcgtggtggcagatatgatgattacagatctgctggtagtgtatgcgccactcccatatggtgtgttgtt
gi|11 : cacgGGCAATCGATATGGCAGAGAACGATCA-C---AG-ATGGCAGATC---CAA----GAAATGAGTTGACA----T-CTTGAGAGGG-TAAAA--GTTTCGATGACTAAAGA--TCA--ACAT---CA-----GAACTTA------TTAA-AGAATTA-----------------TGACAT----TTGTTCTTGAATGTTTATA-CA----T--------TGAAT----GAT---------GACATTTTGGCCCAATATGTTTAAAGAAGACATCTTTA
gi|12 : aatcatcggC-CGGCTATCGCGATGAAAGTGGACGA-CG----------AACGCATA---CAA----TATGC------AC-----T-CTTGAGAGGC-TAGGAT-ATTACAACGA-TA---AACACA--GGAA---CA-----GATTCTA------TAAA-A-----ATGTAAGAGCACCTGTT-TG---T----TTA----CGAATGTTCACT-GA----T--------TGTGT----GGTACGTTT-TAAGCCTTTTTATTTGAGAT-TTTAAG
gi|15 : tTAT----GGTCCTTGTGTAGACTATTTTATTTGGTCT-TTTAAGAAATATAGCTCTACTTGAACGGCATTATTTAGATCAGGAACGCA-T--A-CAT-TTT-----CATAT-TTG-TC-TTTAT-----GTTTCTGTATAAGCA
gi|16 : gtcAGAGACGTA--TTT--TCCAAATTTCT-----G---G-TCCATGT--ATTC-TT-TTAATACTTTTACAAAGT-CTAGAG-T-GACTCTC------ACAAGAGGCA-GGGGT-TAGCAAAACTGGCAAA
gi|17 : tGCGGTATTAC-AGGCAATAGCGGTAGCAGAGGA-----G-C---TG-GTG-CATAGA---AAA----GA--TCAGTTTGCA----CGCTTGAGTGGC-AGAGAT-ATTCCAACGA-TA---
gi|18 : cCCGTATTACGCGGCAATCAGGATAGCAGAAGACTAT---C---AGAGTAGCAGCTA---CAA----TACGATAGTTGACA----T-ATTGAGAGGT-TAA
gi|19 : tcacaaaCCGTATTAC-CGGCAATATCGATGACAGATAACGATTG-C---AG-TTGACAGATA---C
gi|2 : cacaGCCGTAATAC-AGAAAACCGAAGTGGCATGGGACGGTCA-TTATAA-GT---AGATA---CTA----GATACAA-TAGAC---------TGAGAGCC-AAAGGT-ATTTCAACGA-TA---A---------AA---CCCGTTCGAACTTAAAAATGTAAA-A-----GCAGC-------------TG---T----TTT----TTA-TGTCTATT-CA----C--------TATAT----GGTATTTTTT---ACTTATTTATTTGATTT-TTTAGGAAAACTATATCTACTTAAAGAGCATAGTTTAGGTCGTGAACGTG-T--A-AAT-TCT-----CACAT-TTA-CCTTTTATTGAAAATCTCTGTATTAGCATAAT-AACGAAT--TTGCTT-----ATA---ACCTTTTA--CAATT------------------GAGACGTC--TGT--TCCAAATTTAT-----T---G-TCCAGGT--GTTCTTT-T----------ATAAGGACAACGAGCT-G-CTCCT------GCAACTGACA-GGGTT-AACGAAAACTGGCAAACAAAA-----CAAGG-TTATGGTAGATGCAC---GT-AA-AATACTGGCTAT
gi|3 : GCCGAATTAC-CGGCAATCGCGATGACAGAGGACGATCG-C---AG-GTGACAGAAA---CAA----GACACCAGCTGACA----T-CTCGAGAGGG-TAAGGT-ATTTCAACGA-TA---A--TCA--GGAA---CA-----GAGTTTA------TCAACA-----A-----------------TG---T----TTA----CTAGTGTGTATG-CA----T--------TGTAT----GGTACTTTTCTGGACTTTATTATTTGTTGT-TTTAAAAAAGATATCTCTACTGAAATGACATGCTTTAGGTCGTGAGCGCG-G--A-AAT-CCTAATG-CATGTATTGTTC-TTTAT-----ATCTCTTTATATGCACAAA-AACAGAC--TTG-TTATACAATAGACAT---GTC--CAATTGGATGGC--AATCATTCAAGAACATT--TCC--TCTTAATTTCT-----A---G-TCTAAAG--GTTC-TT-T----------ATAAGGA-ATACAA-T-G-TTTCT------ATACGGATCA-GGGGT-AACGAAAAATGGCTAAC-AA-------A--G-T--TGGCAGATACGTTTGGTAAA-GCTACAGGTTATGActtggcggccgatataatt
gi|4 : GTATTAC-CGGCAATCGCAATTATATAGGGCGAT------------------TA---CA---------CTTGTTG--------------GAGGC-TAAGCT-ATTTCAACGA-TA---A---CAATGTAAATGCA-----G---CTG------T----------A-----------------TG---G----TTA----CAATTGTTTATA-CA----T--------TGTAT----GATACTTTTATATACATTT--ACTCG-TTT-TTTAAGGAAGGTATCTCTACTTAAACGTCATTATTTAGATTTCGAACGCG-T--A-CTT-TCT-----TATAT-GTG-TC-TTTAT-----G--------TTAGCACAAA-CAC-GAT--ATGCTCA---AACA---AA---ATA--CAATTGGAACGC--AGATATTTAGGGA--TC--TTTGGTCCAAATGTAT-----A---ACCCCACGT--GTCC-TT-T----------ATATGGG-ATAGAA-TGG-CTCCT------ATATGAGACA-GG
gi|5 : cacaCCGTGTTAT-CGGCAATCGCGATGGCAGCGGTTGATTG-C---A-------AGATA---ATA----GA-------------------TCGAGAAAC--AAAAC-TTATCAA-----A---A--T----GTAA---TA-----GCACTTG-----------------A-----------------TG---T----ATA----CTAATGTTTATA-CG----T--------TGTAT----GATATATTTATATACGTTTTT-----------TTAAAGAAAATATATCTACATATACGGCATCCTTCAGATCGTAAACGTG-TTAATCGA-T--------ATAT-TTT-TC-TTTAT-----ATCTCT-TAT-AACTT--T-AATGG-----TGATTA---AATA---AT---GTA--CAACTGAAGCGCTGAA--ATTCAGGGACGTT--TCT--TCCAAATTTCT-----A---G-ATAATGT--GTGA-TT-TA---------ATAAGAA-ACACGG-T-G--TCTT------AT
gi|6 : cactGTATAAA-AACGGAT--TGA-TTA-----TA---GC---GTATACAATTAGAAGGT--AATTATTTAGAGTCGTC--TCT--TCAAACTGTCT-----G---A-TCTATTT--GTACGTT-T----------ATAAGAA-AAAGCG-T-GAATGTT------AAAAGGTGCA-ATGAT-AAGAAAAAGTGGCAAAT-AAACCTATCA--GATA-TGGCAGATACA---GAC-AA-ATTAATGGCTAT
gi|7 : GCCTTTTTCAAATCACTGTCGTG-T--A-CATACCTATCAACATAT-TTA-CC-TTTGT-----GCCTCTGTATTAACATAATGAAGGGATGATTA-TTT---A-TA---------TA--CAATTGGAGGGC--AATTATTCAAGGACGTC--TCT--TTCAAATTTGT-----A---G-TCAATGTAGGTAT-TG-T----------ATAA--A-ATTTAGTT-G-CTCCTCCTTTAATAA----CATGGGTT-AAGGAAAACTGTTATAC-AAA-----catagtgaccgctactaatttttcagtttggccatctggtaggatgcgcgccactccatttattgtgtgccg
gi|8 : TGTGTATG-CA----T--------TATATACGTGATACTTTTCTAGA--TTTTTATTT-ATAT-TTTGTGGTTGATATCACCACTGAGATGGTATTATTTTGATCGCGAGCGCG-T--T-TGT-TCT-----CTTAT-TTG-TT-ATTAT-----GTCTCTATGTTAGCATAAT-GACCGAA--TTA-TTA---A---------------------GCAGAGC--AAATATTCAGAGATGGC--TAT--TCCAAAgtagg
gi|9 : atgatagcactcgtaaaagcagatattTAC-CGGCAATCGCAACGGCAGAGGACGATTG-C---AG-CTGAAAGATATGTCA------ACGATA---GAAA----T-----AGATGCATAACTT-ATT--AAAAA-T------------GTAA---AA-----TCACTTG------TT---------------------------TC---T----TTA----CGAATGTTTATA-TA----TACATGTACTGTAT----GGTACTTTTCTATACTTTTTTATTTGATAT-TTT
gi|9 : ctattaTTTAGATTGCGACCACACT--A--AT-TTT-----CATAC-CTG-TC-TTTAttagattgcgaccacactaattttcatacctgtcttta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GCATAAAGTAGACAGATAGTGTTATGCTGCAGTTATCGGTGATGGCAGACACAGATGACACAATGGCTAACTTGATGACAGTTATATTTATTGTAGTTGCACTTCTGGTAAGATTCGCGACTCTTACATTTTGGTGTGTCACGTTC
Unaligned ( gi|14 ): ATGCCGGATGCAGAAAAACTAAAGTTTAATTGGTGGCCGATATAATCATTATAGGTTGACCATCTGGTAGGGTGAGTACTACTTCATTTAGGGTGTTTCCGGATATATCACTACTTTCTAGATGTTCAATTTC