lowQualScore : 111 1 1 111 222222222222222222 1111 11111 11111 1111 2222222 22222222 1111111 4444444444444444444444444444444444 1 1 11 4444444444444444444444 1 2 1 1 2222 1 22 33 222 1 2222 1111
lowQualScore : 0 99 6 2 6 3 444 2 33 5 000 111111111111111111 5555 44444 6 44444 1 3 0000 2222222 44 5 99 44444444 77 0 3333333 8 6666666666666666666666666666666666 5 1 999 7 8 5 8 1 3 0 2 00 6 0 6666666666666666666666 3 0 4 8 5 3 3 6 1111 3 6 7 1 22 11 222 0 0 1111 3 1 9999 2 1
lowQualScore : . .. . . . . ... . .. . ... .................. .... ..... . ..... . . .... ....... .. . .. ........ .. . ....... . .................................. . . ... . . . . . . . . .. . . ...................... . . . . . . . . .... . . . . .. .. ... . . .... . . .... . .
lowQualScore : 7 22 4 8 6 0 555 3 22 0 777 333333333333333333 3333 33333 3 33333 4 6 7777 9999999 77 7 99 66666666 77 3 4444444 2 8888888888888888888888888888888888 0 4 666 2 2 0 0 4 2 0 5 22 5 7 3333333333333333333333 3 7 7 3 0 7 3 7 0000 7 0 3 0 00 77 777 0 8 2222 2 2 0000 5 2
consensus : TACTGTTGATGCTCATTATGTAGCACTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTAGT--T--GTT-----GTN--GGTCCTNTTG-----GAGGATGG-----TGTGGTCTT---CTGGGAT---TTTGAC-GGCGCGGT--ATAGCAGGCA-GTCGT---CGACAAAAAT-----GACGGA-CTGATGATT----NGACNGNGT-CTGGGAGGTCATTTAT--GTGGCATAAGAANAGGAGA-GGTCCNAATACCGTTCCCTGNGGTACGCCNGAATC--CACNA--ATACTG-TTCC--GA-TATTTCACCTTCTACNACGAC-CTGCAT-CG-TNCT-TTAGTGAGGAAG-CTGTC--AGCCAG-CGTTGA-TGTT----TCCATCTACTCCATAGANTTCGATCTTGTGAAGTAGCCT
Reference ( gi|5 ) : TGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTAGT--T--GTT-----GTT--GGTCCTGTTG-----GAGGGTGG-----TGTGGTCTT---CTGGGAT---TTTGAT-GACTCGGT--AGAGTTGGCA-ATCAT---TGACACAAA------GACAAA-CTGATGACT----GGACTGCAT-CTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAG-GGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCC--GA-TGTTTCTCCATCGACCACAAC-CTGCAT-TG-TCCTATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCT
gi|11 : TGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTAGT--T--GTT-----TTA--GGTCCTATTG-----GAGGGTGG-----TGTGGTCTT---CTGGGCT---TTTGAT-GACTCGGT--AGAGTAGGC
gi|1 : agtTACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAAGT-----GCTAAAAGGTT--GGC----TTG-----AAGAATCA-----GGTGGTC-----ATGAAATGAATTTAACAGA---GGTGTATAGGAGGCA-GTCAT---C--TACAAATCACCTGAC----CTG-TGATTTAGTGGA----GT-CTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGA-GGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTATA-TAGTTCT--GAGTATTTC-CCTTCTAAAACAAC-TTGCATGTGATGCT-TT-GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|14 : ttcTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTAGT--ttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|8 : tgttcTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATAGTGCTAAGAT-----GTT--GGC----TTG-----AAGAATCA-----GGTGGTCTT-----GAAATGT-TTTTAC-AGAGCAGT--ATAGGAGGCA-GTCATCTGTGA-ATAACTT----GAC----CTG-TGATT----TGACGGACT-CTTGTAGATCATTTAT--ATGACaaagaataatgtggtcttgaaatgttttta
gi|6 : tcttaTGTTTCTGGT-ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAG------GTT-----GTCGAGATCTTTTTGTAGTTGAAGATGGTCGTTTATGG---T---CTGTGAA---TTT-----ACCCGGT------CTGGGAGGTCAT---TGAcat
gi|10 : gcttgtttTTTCTTTGCATTAAAA---------CATGTGGCGGCCCACTTTTCTGGT--T--TTG-----GTA--TGTCATTTTG-----AAGTAAGG-----TGTGATCCTTAGCTGA------TCAGAT-GGTGCAAT--ATAACAGACA-ATTTT---TGGCAAAAA------GACGAA-C--ATGGGT----GG-CTACCTACTCGAAGGTCAtgtggcagagaaataaaagcggaccgagcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|2 : ttactgatactgagtaattaattAGT--T--GTT-----GTA--AGTCCTGTTG-----GAGGGTGG-----TGTGGTCTT---CTGGGCT---TTTGAT-GACTTGGT--AAAGTCGGCA-AATGT---CTACAAAAA------GACAGA-CTGATGACT----GCACTGCGT-CTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAG-GGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCT--GA-TGTTTCACCATCTACCACAAC-CTGCAT-TG-TCCTATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|4 : T--T--GTT------CT--GGTACTGA-G-----GAGG-TAG-----CAT----TT---CTTGGAG---TT-GAT-GGCGCGAT--ATAACAGGCA-GTCGT---CGACAAAGA------GGCGGATCTG-TGACT----TAACCCGGT-CTGGGAGGTCATCGAT--GTGGCAGATAAATAA-AAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC-CTG---GCGGGA-TATCTCACCTTCCACTATGACACT-CAT-CT-TTCGTTGAGTGAAGAAG-CTGTTG-AGCCAG---TTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|17 : tTGATT----TGACGGAGT-CTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGA-GGACCGAATACTATTCCTTGgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|18 : T-CTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGA-GGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|6 : T-CTGGGAGGTCATTGAT--GTGGCA-GAGAA
gi|3 : gcttgttttgtttctggtactaagtagcatttctttgagttaaattccattccccattctttggcccagagttgtaggttgtcgagatctttttgtagttgaagatggtcgtttatggtctgtgaatttacccggTTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTataaaagcggaccgagcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TATAATATGCAGTCATCAGCAAAGATGCGAGTATGTGATGAGAGTCCATCAGAGAGATCATTGGTGAATAGTACGCTGATGACTGGTTCCTTGTCTGACGAATGGCCATCTACTAAGACTTACTGTGTGCGGTTTTGGAGGAAAGATGTAATCCATCGGTGAGTGGAACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTTTGGTGTGGGACTCGATCAAACGCTTT
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|12 ): TTGCTTATGGTACGCCAGAATCAACTGTTACGGGTTCCGAGTATTCCCTTTCTATAACGACTTGTATGTGACGCTTTGTGAGGAACTCCCAGTTGTTTATACCCATATACACCGTAGTTTCTGATCTT
Unaligned ( gi|13 ): GCTTGTTTTGTTTCTGGTACTGAGAGAGTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAGGTTGTCGAGATCTTTCTGTAGTTAGAATGGTCGTTTATG
Unaligned ( gi|15 ): TTCTGTAGTTAGAATGGTCGTTTATGGAGTCGATGGCGCGATATAACAGGCAGTCGTCGGCAAAAAGGCGGATCTGTGACTTTACCCGGTCTGG
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|19 ): AAATGTTTTTACAGCGCGGTATACGAGGTGGTCGTCTGCAAATAACCTGAC
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 11111111 11111111 11111 1111111 11111111 4444444 1111 2 11 1111 1 1 1 3333333333333 1 22 11 3333 111111
lowQualScore : 4 1 555 0 2 4 88888 33333333 222 5 88888888 11111 3333333 44444444 2 0 3 2 4444444 7777 1 3 22 222 4 0 66 1 1 4 2 2 1 1 3 1 11 2222 0 99 6 1 6 5 1 1 8 1111111111111 0 66 99 0000 6 444444 2 33 0 2
lowQualScore : . . ... . . . ..... ........ ... . ........ ..... ....... ........ . . . . ....... .... . . .. ... . . .. . . . . . . . . . .. .... . .. . . . . . . . ............. . .. .. .... . ...... . .. . .
lowQualScore : 0 0 222 5 2 4 11111 99999999 111 3 77777777 11111 1111111 33333333 0 7 7 5 1111111 0000 6 2 99 111 0 1 99 3 0 0 1 1 0 0 7 0 00 0000 8 00 0 4 0 8 4 0 0 6666666666666 6 00 00 4444 7 888888 2 22 3 5
consensus : TGCTGTTGATGCTCATTANGTAGCACTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GT--T--GTT-----GTAGGTCCTNTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGGCAGTCGTCGGCAAAT-AAC-TGACGGA-CTGATGACTTGACCGNGT-CTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGNGGNCCNAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--ATAC-TGCTTCCGAGTATTTCACCTTCTACNACGAC-CTGCAT-TG-T---NC-TATTAGTGAGGAAGTCTGTC--AGCCAGG-CGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TACTGTTGATGCTCATTATGTAGCACTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GT--T--GTT-----GTNGGTCCTNTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGCAGGCAGTCGTCGACAAA--AA--TGACGGA-CTGATGATTNGACNGNGT-CTGGGAGGTCATTTAT--GTGGCATAAGAANAGGAGAGGTCCNAATACCGTTCCCTGNGGTACGCCNGAATC--CACNA--ATAC-TG-TTCCGA-TATTTCACCTTCTACNACGAC-CTGCAT-CG-T---NC-T-TTAGTGAGGAAG-CTGTC--AGCCA-G-CGTTGA-TGTT----TCCATCTACTCCATAGANTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-----GCTAAAAGGTTGG----CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGGCAGTCATCTACAAATCACC-TGAC----CTG-TGATTTAGTGGAGT-CTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTATAT-AG-TTCTGAGTATTTC-CCTTCTAAAACAAC-TTGCATGTGAT---GC-T-TT-GTGAGGAA--CTGTCTTAATCA-GTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GT--T--TTG-----GTATGTCATTTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGACAATTTTTGGCAAA--AA---GACGAA-C--ATGGGTGG-CTACCTACTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttactgatactgagtaattaatttTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GT--T--GTT-----TTAGGTCCTATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGGC
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TTACGGG-TTCCGAGTATTCC-CTTTCTATAACGAC-TTGTAT--G-TGACGC-T-TT-GTGAGGAA--CTCCC--AGT-----TGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GT--T--GTC-----G-AGATCTTTCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GT--cgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGGCAGTCGTCGGCAAA--AA---GGCGGATCTG-TGACTTTACCCGGT-CTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGT-CTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : T-CTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGGTGGTCGTCTGCAAAT-AACCTGAC
gi|2 : aaatgA-GT--T--GTT-----GTAAGTCCTGTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGGCAAATGTCTACAAA--AA---GACAGA-CTGATGACTGCACTGCGT-CTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATAC-TGCTTCTGA-TGTTTCACCATCTACCACAAC-CTGCAT-TG-T---CC-TATTAGTAAGGAAGTCAGTC--AGCCAGG-CATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : T--T--GTT-----CT-GGTACT---------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGGCAGTCGTCGACAAA--GA---GGCGGATCTG-TGACTTAACCCGGT-CTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC-C-TG-GCGGGA-TATCTCACCTTCCACTATGACACT-CAT-CT-T---TCGT-TGAGTGAAGAAG-CTGTTG-AGCCA----GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GT--T--GTT-----GTTGGTCCTGTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGGCAATCATTGACACA--AA---GACAAA-CTGATGACTGGACTGCAT-CTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATAC-TGCTTCCGA-TGTTTCTCCATCGACCACAAC-CTGCAT-TG-T---CC-TATTAGTAAGGAAGTCTGTC--AGCCAGG-CATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGT--T--GTC-----G-AGATCTTTTTGTAGTTG--AAGATGGTCGTTTATGGTC--T
gi|6 : gcttgttttgtttctggtATGGT-CTG-TGAATTTACCCGGT-CTGGGAGGTCATTGAT--GTGGCAGAGAAATAAAAGCGGACCGAGCACCGgtgaatttacccggtctgggaggtcattgatgtggcagagaaataaaagcggaccgagcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : gcttgttttgtttctggtactaagtagcatttctttgagttaaattccattccccattctttggcccagagttgtaggttgtcgagatctttttgtagttgaagatggtcgtttTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-GTGCTAAGAT-----GTTGG----CTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGGCAGTCATCTGTGAAT-AACTTGAC----CTG-TGATTTGACGGACT-CTTGTAGATCATTTAT--ATGACgaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATAATATGCAGTCATCAGCAAAGATGCGAGTATGTGATGAGAGTCCATCAGAGAGATCATTGGTGAATAGTACGCTGATGACTGGTTCCTTGTCTGACGAATGGCCATCTACTAAGACTTACTGTGTGCGGTTTTGGAGGAAAGATGTAATCCATCGGTGAGTGGAACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTTTGGTGTGGGACTCGATCAAACGCTTT
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 4444444 1111 1 11 11 1 11 1 11 11 11 111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 3333333 777 3333 5 5 7 66 5555 1 77 1 1 1 1 1 0 1 3 1 11 1 11 0 0 88 5 1 1 8 88 8 99 11 6 00 6 99 66 6 444444 1 0 22 0 2
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . ....... ... .... . . . .. .... . .. . . . . . . . . . .. . .. . . .. . . . . .. . .. .. . .. . .. .. . ...... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 7777777 888 8888 0 0 4 55 1111 4 99 0 0 0 0 0 7 0 7 0 00 0 00 8 0 00 8 4 0 0 88 0 00 44 0 66 0 00 44 7 888888 0 7 00 3 5
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGCAAA-AA---TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--ATACTGNTTCCGAG-TATTTCACCTTCTACNACGAC-CTGCAT-TG-T-NCTNTTAGTGAGGAAGTCTGTC--AGCCAGNCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCACTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGCAAATAA-C-TGA---CGGA-C-T-GATGACTTGACCGNGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGNGGNCCNAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--ATACTGCTTCCGAG-TATTTCACCTTCTACNACGAC-CTGCAT-TG-T-NCTATTAGTGAGGAAGTCTGTC--AGCCAGGCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTACAAATCA-CCTGA---C----C-T-G-TGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTATA-TAGTTCTGAG-TATTTC-CCTTCTAAAACAAC-TTGCATGTGAT-GCT-TT-GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGCAAA-AA----GA---CGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TTACGGGTTCCGAG-TATTCC-CTTTCTATAACGAC-TTGTA--TG-TGACGCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGCAAA-AA----GG---CGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGCAAATAACC-TGA---C
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTACAAA-AA----GA---CAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCTGA--TGTTTCACCATCTACCACAAC-CTGCAT-TG-T-CCTATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGACAAAGA-----GG---CGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC-CTG---GCGGGATATCTCACCTTCCACTATGACACT-CAT-CT-T-TCGTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGACACA-AA----GA---CAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCCGA--TGTTTCTCCATCGACCACAAC-CTGCAT-TG-T-CCTATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGAA-A-TAAAAGCGGA-C-C-GA
gi|8 : gcttgttttgtttctggtTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGTGAATAA-CTTGA---C----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TATAATATGCAGTCATCAGCAAAGATGCGAGTATGTGATGAGAGTCCATCAGAGAGATCATTGGTGAATAGTACGCTGATGACTGGTTCCTTGTCTGACGAATGGCCATCTACTAAGACTTACTGTGTGCGGTTTTGGAGGAAAGATGTAATCCATCGGTGAGTGGAACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTTTGGTGTGGGACTCGATCAAACGCTTT
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 3333333 1111 1 11 11 11 1 11 111 11 1 1111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 66 6666666 777 3333 5 5 7 66 4444 1 77 1 1 1 0 1 3 1 11 1 11 0 11 88 5 4 1 6 1 99 6 77 99 1 55 22 3 666 1 00 1 7777777 0 1 22 0 0
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . .. ....... ... .... . . . .. .... . .. . . . . . . . .. . .. . .. .. . . . . . .. . .. .. . .. .. . ... . .. . ....... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 11 2222222 888 8888 0 0 4 55 9999 4 99 0 0 0 7 0 7 0 00 0 00 8 88 00 8 0 0 7 0 88 7 77 22 0 00 33 5 888 0 00 4 9999999 7 0 00 7 3
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--ATACTGGTTCCGAG-TATTTCACCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--ATACTGNTTCCGAG-TATTTCACCTTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGNCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTAC--AAATCACC-TGA---C----C-T-G-TGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTATA-TAGTTCTGAG-TATTTC-CCTTCTAAAACAAC-TTGCATGTGAT-GC--TTT--GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGC--AAA--AA---GA---CGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TTACGGGTTCCGAG-TATTCC-CTTTCTATAACGAC-TTGTA--TG-TGAC--GCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGC--AAA--AA---GG---CGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGC--AAAT-AACCTGA---C
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTAC--AAA--AA---GA---CAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCTGA--TGTTTCACCATCTACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGAC--AAA--GA---GG---CGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC-CTGG---CGGGATATCTCACCTTCCACTATGACACT-CAT-CT-T-TC--GTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGAC--ACA--AA---GA---CAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--ATACTGCTTCCGA--TGTTTCTCCATCGACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGA--AA--TAAAAGCGGA-C-C-GA
gi|7 : gcttgttttgtttctggtCCATCTACTAAGAC-TTACTG-TG-T-GCGGTTTTGG--AGGAAAGATGTA--ATCCA-TCGGTGAGTGGA----ACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : tataatatgcagtcatcagcaaagatgcgagtatgtgatgagagtccatcagagagatcattggtgaatagtacgctgatgactggttccttgtctgacgaatggTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGT--GAAT-AACTTGA---C----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACttggtgtgggactcgatcaaacgcttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 3333333 1111 1 11 11111111 11 111 1 1111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 66 6666666 777 3333 5 5 7 66 4444 1 77 1 1 1 0 1 3 1 99 1 99 6 33 88888888 1 1 6 1 99 6 77 99 1 55 22 3 666 1 99 1 7777777 0 1 22 0 0
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . .. ....... ... .... . . . .. .... . .. . . . . . . . .. . .. . .. ........ . . . . .. . .. .. . .. .. . ... . .. . ....... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 11 2222222 888 8888 0 0 4 55 9999 4 99 0 0 0 7 0 7 0 22 0 22 7 33 55555555 0 0 7 0 88 7 77 22 0 00 33 5 888 0 77 4 9999999 7 0 00 7 3
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TATT-----TC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACNG--AT-ACTGGTTCCGAG-TATT-----TCACCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTAC--AAATCACC-TGA---C----C-T-G-TGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTAT-A-TAGTTCTGAG-TATT-----TC-CCTTCTAAAACAAC-TTGCATGTGAT-GC--TTT--GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGC--AAA--AA---GA---CGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TT-ACGGGTTCCGAG-TATT-----CC-CTTTCTATAACGAC-TTGTA--TG-TGAC--GCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGC--AAA--AA---GG---CGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGC--AAAT-AACCTGA---C
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTAC--AAA--AA---GA---CAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCTGA--TGTT-----TCACCATCTACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGAC--AAA--GA---GG---CGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC--CTGG---CGGGATATC-----TCACCTTCCACTATGACACT-CAT-CT-T-TC--GTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGAC--ACA--AA---GA---CAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCCGA--TGTT-----TCTCCATCGACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGA--AA--TAAAAGCGGA-C-C-GA
gi|7 : gcttgttttgtttctggt--CGCTG--ATGACTGGTTCCTTG-TCTGACGAATGGCCATCTACTAAGAC-TTACTG-TG-T-GCGGTTTTGG--AGGAAAGATGTA--ATCCA-TCGGTGAGTGGA----ACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : tataatatgcagtcatcagcaaagatgcgagtatgtgatgagagtccatcagagagatcattggtgaatagtaTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGT--GAAT-AACTTGA---C----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACttggtgtgggactcgatcaaacgcttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 3333333 1111 1 1111 11 2222222222 11 111 1 1111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 66 6666666 777 3333 5 5 7 66 4444 1 77 1 1 1 0 1 3 1 99 0000 6 33 4444444444 1 1 6 1 99 6 77 99 1 55 22 3 666 1 99 1 7777777 0 1 22 0 0
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . .. ....... ... .... . . . .. .... . .. . . . . . . . .. .... . .. .......... . . . . .. . .. .. . .. .. . ... . .. . ....... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 11 2222222 888 8888 0 0 4 55 9999 4 99 0 0 0 7 0 7 0 22 8888 7 33 3333333333 0 0 7 0 88 7 77 22 0 00 33 5 888 0 77 4 9999999 7 0 00 7 3
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TAT------TTC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TAT------TTC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTAC--AAATCACC-TGA---C----C-T-G-TGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTAT-A-TAGTTCTGAG-TAT------TTC-CCTTCTAAAACAAC-TTGCATGTGAT-GC--TTT--GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGC--AAA--AA---GA---CGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TT-ACGGGTTCCGAG-TAT------TCC-CTTTCTATAACGAC-TTGTA--TG-TGAC--GCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGC--AAA--AA---GG---CGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGC--AAAT-AACCTGA---C
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTAC--AAA--AA---GA---CAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCTGA--TGT------TTCACCATCTACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGAC--AAA--GA---GG---CGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC--CTGG---CGGGATAT------CTCACCTTCCACTATGACACT-CAT-CT-T-TC--GTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGAC--ACA--AA---GA---CAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCCGA--TGT------TTCTCCATCGACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGA--AA--TAAAAGCGGA-C-C-GA
gi|7 : gcttgttttgtttctggt--CGCTG--ATGACTGGTTCCTTG-TCTGACGAATGG-CCATCTACTAAGAC-TTACTG-TG-T-GCGGTTTTGG--AGGAAAGATGTA--ATCCA-TCGGTGAGTGGA----ACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : tataatatgcagtcatcagcaaagatgcgagtatgtgatgagagtccatcagagagatcattggtgaatagtaTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGT--GAAT-AACTTGA---C----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACttggtgtgggactcgatcaaacgcttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 3333333 1111 1 1111 11 2222222222 11 111 1 1111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 66 6666666 777 3333 5 5 7 66 4444 1 77 1 1 1 0 1 3 1 99 0000 6 33 4444444444 1 1 6 1 99 6 77 99 1 55 22 3 666 1 99 1 7777777 0 1 22 0 0
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . .. ....... ... .... . . . .. .... . .. . . . . . . . .. .... . .. .......... . . . . .. . .. .. . .. .. . ... . .. . ....... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 11 2222222 888 8888 0 0 4 55 9999 4 99 0 0 0 7 0 7 0 22 8888 7 33 3333333333 0 0 7 0 88 7 77 22 0 00 33 5 888 0 77 4 9999999 7 0 00 7 3
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TAT------TTC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TAT------TTC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTAC--AAATCACC-TGA---C----C-T-G-TGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTAT-A-TAGTTCTGAG-TAT------TTC-CCTTCTAAAACAAC-TTGCATGTGAT-GC--TTT--GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGC--AAA--AA---GA---CGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TT-ACGGGTTCCGAG-TAT------TCC-CTTTCTATAACGAC-TTGTA--TG-TGAC--GCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGC--AAA--AA---GG---CGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGC--AAAT-AACCTGA---C
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTAC--AAA--AA---GA---CAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCTGA--TGT------TTCACCATCTACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCT
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGAC--AAA--GA---GG---CGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC--CTGG---CGGGATAT------CTCACCTTCCACTATGACACT-CAT-CT-T-TC--GTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGAC--ACA--AA---GA---CAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCCGA--TGT------TTCTCCATCGACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGA--AA--TAAAAGCGGA-C-C-GA
gi|7 : gcttgttttgtttctggt--CGCTG--ATGACTGGTTCCTTG-TCTGACGAATGG-CCATCTACTAAGAC-TTACTG-TG-T-GCGGTTTTGG--AGGAAAGATGTA--ATCCA-TCGGTGAGTGGA----ACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : tataatatgcagtcatcagcaaagatgcgagtatgtgatgagagtccatcagagagatcattggtgaatagtaTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGT--GAAT-AACTTGA---C----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACttggtgtgggactcgatcaaacgcttt
blockSeqs : A T ACG T G TA GGC TAGTTG TCGTT CTTAG AATGT AG T C T GA G AG TAACCT AAG GGAT A G G TT CCGG A AA G G G T G A AT TG G GA GACGAATGG T A A G T . GA GG C TT CT A TG G GT G CTGAACT A TT
blockSeqs : A T TTT T . TA T TAGTT . GTTT GCT TG T T . . G . TAACTT . GGAT . . A TG GGAG T . A G T G A T . GG . G TTCA A C . G T . C . A TA GT T C G GG G TTT T AC
blockSeqs : T G TCG G . TA A A . TT AGT TT T C . . T . AAT . GAA . . A GC TGCG G . C C C G T C . CA . G CTCA T T . G T . T . T GA GT T C G GG . TTT T AG
blockSeqs : A G ACG C . TT T G . TT GCT TG C G . . T . AA . AGA . . A TA CCGG G . T A G T A G . GG . . TTCT A C . A G . C . A TA AG T A T T . TTT C GA
blockSeqs : A T TTC T . A G G . TT GAG TG T T . . G . AA . AAA . . . GG TGCA G . C C C G T C . TG . . TCC A T . . . . G . T TG G . . . . . GAA T AG
blockSeqs : T T TAG G . T G G . TT GAT TT T C . . G . AA . GGA . . . TG GGAC G . . C G TG
blockSeqs : G . C . A T G . T GAA G T T . . G . GA . . . . . . CTA T
blockSeqs : . A . A . T . G C G . . T . AA .
blockSeqs : T . G .
blockSeqCons : TA* TT***** GAT***** AA***** GGA* CG** G* TTCA****** T* TA GT C**
originalCons : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAA--AA--TGA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TAT------TTC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
finalCons : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTCTT-----CTGGGAT-----TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGC--AAAAA-----GA---CGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TATTTCA------CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT
Alignments
lowQualScore : 111 111 11111111 11111 1111111 11111111 1111111 1 1 1111 11 11111111 11 111 1 1111111
lowQualScore : 1 1 555 0 2 4 444 0 111 88888888 11111 3333333 22222222 22 2 1 4 66 1 4444444 4 888 3 3 0 5 5 3 66 4444 1 77 1 1 1 0 1 3 1 99 0000 6 33 88888888 1 1 6 1 99 6 77 99 1 55 22 3 666 1 99 1 7777777 0 1 22 0 0
lowQualScore : . . ... . . . ... . ... ........ ..... ....... ........ .. . . . .. . ....... . ... . . . . . . .. .... . .. . . . . . . . .. .... . .. ........ . . . . .. . .. .. . .. .. . ... . .. . ....... . . .. . .
lowQualScore : 0 0 222 5 2 4 000 9 444 77777777 11111 8888888 55555555 55 1 0 0 11 1 4444444 4 888 9 4 0 0 0 1 55 9999 4 99 0 0 0 7 0 7 0 22 8888 7 33 55555555 0 0 7 0 88 7 77 22 0 00 33 5 888 0 77 4 9999999 7 0 00 7 3
consensus : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGCA-------AA-AA---GACGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TATT-----TC-CCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
Reference ( family-136 ) : TGCTGTTGATGCTCATTANGTAGCATTTCTTNGCGTTAAATCGCATTCCCCATGTATCGGCCCATACTTCTA-GTTGTTGTA-GGTCCT--NTTG-----G--AGGATGG-----TGTGGTC--TT---CTGGGA--T---TTTGACGGCGCGGTATAGNAGG-CAGT--CGTCGGCA-------AA-AA---GACGGA-C-T-GATGACTTGACCGAGTCTGGGAGGTCATTTAT--GTGGCATAAGAANAGNAGAGGTCCCAATACCGTTCCCTGNGGTACGCCNGAATC--CACCG--AT-ACTGGTTCCGAG-TATT-----TCACCNTCTACNACGAC-CTGCAT-TG-T-NC--TNTTAGTGAGGAAGTCTGTC--AGCCAGTCGTTGA-TGTT----TCCATCTACNCCGTAGNNTTCGATCTTGTGAAGTAGCCT
gi|1 : TACTGTTGTTTCTTATTATGTAGCACTTTTTGGCATTGAATCATATTCCCTATGTATTTGCCAATACTTCAA-GT-GCTAAAAGGTTGG--CTTG-----A--AGAATCA-----GGTGGTC-------ATGAAA--TGAATTTAACAGAGGTGTATAGGAGG-CAGT--CATCTACA-------AA-TC---ACCTGA-C-C-TGTGATTTAGTGGAGTCTGGTAGATCCTTTAT--GTGGCATAAGAAGAGAAGAGGACCCAATACTGTTCCTTGTAGTATGCCAGAATC--AACTATTAT-A-TAGTTCTGAG-TATT-----TC-CCTTCTAAAACAAC-TTGCATGTGAT-GC--TTT--GTGAGGAA--CTGTCTTAATCAGTTGTTTA-TTGT----AACATCTACACTATAGTTTCTGATCTTGTGTAGTAGTCT
gi|10 : ttcTGATACTGAGTAATTAATTTTTCTTTGCATTAAA----A-----CATGTGGCGGCCCACTTTTCTG-GTTTTGGTA-TGTCAT--TTTG-----A--AGTAAGG-----TGTGATC--CTTAGCTGA--------TCAGATGGTGCAATATAACAGA-CAAT--TTTTGGCA-------AA-AA---GACGAA-CATGGGTGGCT--ACCTA--CTCGAAGGTCAttcatgtgggactgtatcaaaggtttttgaaaagtctaggatgaccatatgataatcaatttggtt
gi|11 : ttacTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCATATGTATCGACCCATGTCTCTA-GTTGTTTTA-GGTCCT--ATTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTCGGTAGAGTAGG-C
gi|12 : agtTTGCTTATGGTACGCCAGAATC--AACTG--TT-ACGGGTTCCGAG-TATT-----CC-CTTTCTATAACGAC-TTGTA--TG-TGAC--GCTTTGTGAGGAACTC--------CCAGTTGTTTA-TA------CCCATATACACCGTAGTTTCTGATCTT
gi|13 : GTAGCATTTCCAGGAGTTAAATTTCATTCCCAATTCTTTGGCCCAGAGTTTAG-GTTGTCG-A-GATCTT--TCTGTA---GTTAGAATGG-----T
gi|14 : gcttgttttgtttctggtactgagagaTACTGTTGATGCTCATTATGTAGCACCTTTTGGCGTTAAATCGCATTCCCCATGTATTTGCCCATACTTCTA-GTcgtttatg
gi|15 : tgttcTGGTCGTTT---ATGGAG--T---C--GATGGCGCGATATAACAGG-CAGT--CGTCGGCA-------AA-AA---GGCGGATC-T-G-TGACTTTACCCGGTCTGGaaagaataatgtggtcttgaaatgttttta
gi|17 : ttctgtagttagaaTGATTTGACGGAGTCTGGTAGATTATTTAT--GTGGCATAAAAAGAGGAGAGGACCGAATACTATTCCTTG
gi|18 : TCTGGGAGGTCGTTTATAAATGCC--AGGAAAAGGAGAGGTCCTAATACCGTTCCCTTGGGTAGACCTGA
gi|19 : --T---TTTTACAGCGCGGTATACGAGG-TGGT--CGTCTGCA-------AA-
gi|2 : aaatgA-GTTGTTGTA-AGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGC--T---TTTGATGACTTGGTAAAGTCGG-CAAA--TGTCTACA-------AA-AA---GACAGA-C-T-GATGACTGCACTGCGTCTGGGAGGTCGTTTAT--GTGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCTGA--TGTT-----TCACCATCTACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCAGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATATACTTCCATCTTGTGAAGTAGCCTtaacctgac
gi|3 : TTGA-TGTT----TCCATCTACTCCATAGAGTTCCATCTTGTGAAGTAGCCTtctgttggggactgtgtcaaaggctatggaaaaatcaagaataaccatgtcaatctgtgcctctttgtcaaagtttcgcagttgatgttgattaataaattattttca
gi|4 : TTGTTCT--GGTACT-----------G--AGGA-GG-----TAGCAT---TT---CTTGGA--G---TT-GATGGCGCGATATAACAGG-CAGT--CGTCGACA-------AA-GA---GGCGGATC-T-G-TGACTTAACCCGGTCTGGGAGGTCATCGAT--GTGGCAGATAAATAAAAGCGATCTGAGCACCGTTCTCTGTGGCACACCGGAATCATCATCA--AC--CTGG---CGGGATATC-----TCACCTTCCACTATGACACT-CAT-CT-T-TC--GTTGAGTGAAGAAG-CTGTTG-AGCCA---GTTGAGTGCTGAACTCCG--TATCCTGTAGGACTCGATCTTGTGGAGTAGCTTtctgttgggaactgtgtcgaatgcctcggaaaagtcgagaatgaccatgtcgttctatgcctctttgtccgagtttcgcagaaggtcgtgaattgttttcaagagtttagtttcacaagagaagcctgttctaaagccatgatttaatgttgtgtggattttgtttttttttcaaaatgatctataatatattttatgtgttctagtagtttacatgatacacatgtcaaggaaacgggtttttaattttcagggaggagaacttcgcctttcttgtatattggtgccacatttgcgatgagccagtcggatgggggtttaccagtgttgatgg
gi|5 : tTGCTGTTCATGCTCATCAAGTAGCATTTCTTTGCATTAAAACGCATACCCCATGTATCGGCACATGTCTCTA-GTTGTTGTT-GGTCCT--GTTG-----G--AGGGTGG-----TGTGGTC--TT---CTGGGA--T---TTTGATGACTCGGTAGAGTTGG-CAAT--CATTGACA-------CA-AA---GACAAA-C-T-GATGACTGGACTGCATCTGGGAGGTCATTTAT--ATGGCATAAGAACAGCAAGGGTCCCAATACTGTGCCCTGGGGTACTCCCGAGTC--CACGG--AT-ACTGCTTCCGA--TGTT-----TCTCCATCGACCACAAC-CTGCAT-TG-T-CC--TATTAGTAAGGAAGTCTGTC--AGCCAGGCATTGA-TGTT----TCCATCTACTCCATAGAGTACCATCTTGTGAAGTAGCCTgttgttggggatggtgtcgaacgctttgctaaaatccaggatcacgtgtcgacttgcgttttttggtcatagtagttgagta
gi|6 : ACTAAGTAGCATTTCTTTGAGTTAAATTCCATTCCCCATTCTTTGGCCCAGAGTTGTAGGTTGTCG-A-GATCTT--TTTGTAGTTG--AAGATGGTCGTTTATGG-----T---CTGTGA--A---TTT----ACCCGGTCTGGGAGGTCATTGATGT-GGCAGAGAAATAA-AA---G-CGGA-C-C-GA
gi|7 : gcttgttttgtttctggt--CGCTG--ATGACTGGTTCCTTG-TCTGACGAATGGCCATCTACTAAGAC-TTACTG-TG-T-GCGGTTTTGG--AGGAAAGATGTA--ATCCA-TCGGTGAGTGGA----ACCCTGTATGCCGTAGTGCTTGAGCTTACTGAGTAGCCTgcaccggaaccaacatcaacctggcgggatctttcacctttcgctatatgactcgtctttcgt
gi|8 : tataatatgcagtcatcagcaaagatgcgagtatgtgatgagagtccatcagagagatcattggtgaatagtaTGTTGATGCTTATTGTGTAGCCCTTTTTGGCGTTGAATAGCATTCACCATATATTTGCCAATACTTATA-G-TGCTA-A-GATGTTGGCTTG-----A--AGAATCA-----GGTGGTC--T-----TGAAATGT---TTTTACAGAGCAGTATAGGAGG-CAGT--CATCTGTG-------AATAACTTGAC----C-T-G-TGATTTGACGGACTCTTGTAGATCATTTAT--ATGACttggtgtgggactcgatcaaacgcttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTGAGGAAAGACTGTATCCAGCAAAGGGTGCTGCCTCGTACTCCTTAAAACTCTAGTTTGTGTTGATTGGGGACCTTGTTGAAAGCCTTAGAAAAATCTAGGAGTACAACATCAACTTGGTCTTTTCCTGTTTGTAGTTGACTAGTGATTCCCTGGAGAGTGGTGATCAGCTGAGTCTCACA
Unaligned ( gi|16 ): CTTTTTTAGATTATGTAGGTCATTTTGGTGTAAGATGTGATCCTGGCTGATTGGATGGTGTGATATAAAAGACAAT
Unaligned ( gi|20 ): TTGCGTTGAGCCAGTCGGATGGGAGTTTACCAGTGTTGATGGA
Unaligned ( gi|21 ): TTCAGGGAGGTCGTTAATAAATGCCAGGAAGAGGAGATGT