lowQualScore : 11111111111111111111111
lowQualScore : 11111 1 1111111111 55555555555555555555555555555 1111111 1 1 3333333333333 222 00000000000000000000000 111 4444444444444444444 11 11 1 11
lowQualScore : 4 77 1 55 1 44 00000 0 4 7 5555555555 00000000000000000000000000000 1111111 4 22 6 0 3333333333333 111 6 33333333333333333333333 8 999 5555555555555555555 33 6 11 9 0 3 33 0 0
lowQualScore : . .. . .. . .. ..... . . . .......... ............................. ....... . .. . . ............. ... . ....................... . ... ................... .. . .. . . . .. . .
lowQualScore : 0 33 5 00 4 22 33333 2 0 9 9999999999 99999999999999999999999999999 8888888 0 77 6 6 2222222222222 666 0 99999999999999999999999 6 111 5555555555555555555 00 6 00 8 0 8 44 6 7
consensus : CACTAGGAACTCTGA-AAA-CTGCTG--AAAATG-ACAAT----ATACGGAC-TGACTTGC----------CTTA---NNAC-------G--------------TACT-------GACTACATACTGAC-TGGGGTACTGACATG---C---G---CTGACANAGGTATTAC------TAGTCCATCTTATAAGACCGTNAAANGTATTATAATAC-G--C---A--AA-TA--ACGGTCTTAC-AAGTACTT--TTTACAGTAGAGTGATAAGCCTCTGTTCCACCG-CCGAAACACGTAGCTA
Reference ( gi|4 ) : CACTAGGAACTCTGA-AAA-CTGCTG--AAAGTG-ACAAT----ATACGGAC-TGAATTGC----------CTTA---TTAC-------G--------------TACT-------GACTACATACTGAC-TGGGGAACTGAAATA---C---G---TTGACACTGGTACTGA------AAGTCAGTC------GACCGTTAAGGATATTATAATAC-G--C---A--AA-TAA-ACGGTCTTAC-AAGAACTT--TTTACAGTAGAGTGATAACCCTCTGTTCCACCT-CCGAAACACGTGGCTA
gi|6 : CACCAGTACCTCAGA-AAT-AAGCTT--AAAAAA-ACAAT----ATATGGAC-TGACTTGC----------CTCAAAATTACTGACTCCA--------------TACT-------GACTACAAACTGAC-TGGCGTACTGAAATG---C---G---CTTACTTAGGTATT-ATCTTTTAAGTTTATCTTATAAGACCGTAAATAGTGTTTTAATAC-A--C---A--CA-AAATACTGTCT
gi|3 : atCACTAGGAACTCTTATACA-CT------AAAATA-ACAA-----ATATAGAC-TGACTTGT----------GTTG---AAAT-------G--------------TGCA-------TACCACAT
gi|5 : ACCAGAATTTCTGA-AAA-CTGCTG--AAAGCG-ACAAT----AAACGGAC-TGACTTGCCTGAAATGTGCTTA---CTAC-------ACATTGGCACGGGTTTACTGCGTCCTGACTACATACTGAC-TGAGGTACTGACATACGCC---G---CTGACACAGGTATTAC------TAGTCCATCTTATATGACCGTCAAATGTATTTTAATAC-tattccgtcttaaaagactgtaaaaggtaatataatctgccaccaatatacagtcatacaagtacttttaaagaagagtgatacaactttattccactgctgcaacacgtagctacagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|10 : ACTAGCAACTCTGA-ATA-C-GCTT--ACATT--ACAAA----ATATAGAC-TGACTCGC----------CTTA---A-AT-------G--------------TACT-------GACTACACACTGGCATGGctaa
gi|16 : ACTAGGAACGCTGA-AAA-CTGCTG--GAAGTG-ACtcttactacacactgactgcatgcgctgactgaggtata
gi|1 : CTAGGAACTCTGA-AA---TGCGGTTAAAACA-TTAAT----ATATATAC-T-ATTTGT----------CTTA----AAT-------G--------------TACA-------ATCGCCATACTGGC-t
gi|15 : CTAGGAACTCTGA-AAA-CTGCTG--AAAGTG-ACATT----ATACGGatgattttactgcgtatttactacataatgaatttagtgctggtgctcgctagctgaggtattaccagtccgtctaataaaagcgataacggtattataataggttcaaactatggttttgggaatactttacagtagagtgataagcctctgttcccctgctgcgacacgtacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|14 : TAGGAACTCTGA-AAAACCGCTG--AAAGTG-ACAAT----AAACGGAC-AGACTTTC----------CTTA---
gi|11 : GGGACTCTGA-AAC-CCGCTG--AAAATG-ATAAT----GCATAGAC-TGACTTGC----------CTTA----AAT-------G--------------TGCT-------GACGTCATACTGAC-aatg
gi|13 : ctAACTTTGA-CAC-ATGCTG--AAAAAA-TCAAA----ATATGGAC-TGATTTAC----------CTTA----AAT-------G--------------TACT-------TACTCCATACTGGC-actgtcttactttgtttaataatattttattg
gi|2 : CTG--AAAATA-ACAAA----ATATGGAC-T----TGC----------CGTA---A-AT-------G--------------TACT-------GACTCTATACTGAT-TTGGaagatctaact
gi|1 : AAATGTACAATCGCCATACTGGCATGA-TT-------------TTA---CTGC-------G--------------TATT-------TACTACATAATGAA-TTTAGTGCTGGTGCT---C---G---CTAGCTGAGGTATTAC------CAGTCCGTCTAATAAAAGCGATAACGGTATTATAATAG-GTTC---A--AACTA---TGGTTTTG---GGAATAC--TTTACAGTAGAGTGATAAGCCTCTGTTCC-CCTGCTGCGACACGTtgttactacgtactaactacatactgaatagtttacttcactagctgcagttatacaagtccatcttataaaactgtaaaaggtataataccaacccccacccccaccccacccctcaaaaaataggtcttacaagtacttttgcaatagactaataaccctttgttccaccgccgaaacatatgcctacatgt
gi|9 : ctaggaactctgaaatgcggttaaaacattaatatatatactatttgtcttGT----------CTTA---CTAC-------G--------------TACT-------GTCTACATACTGAC-TGTTGCACTGACATG---C---GCTACTGACACAGGTATTAC------TAGTCCATCTTATAAGACCGTCAAATGTATTACAATAC-C--CCCAA--AA-T---ACGGTCTTacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|8 : TAC-------G--------------TACT-------GACTACATACTGAC-TGAGGTACTGACATG---CGCTG---CTGACAAAGGTATTAC------TAGTCCATCTTATGAGACCGTCAAATGTATTATAATAC-C--C---C--AA-AAA-ACGGTCTTACTACGTACTG--TCTACA
gi|7 : tgc------GACCGTAAAGATTATTATTATACCG--CTT-A--AA-TA----GCTCT----AAGAAGTTATTTCACAGTAGAGTGATCAGCACCTGTTCCACTT-TCGAAACACGTAGCTA
gi|3 : cgctggctgaggtatcaccagccccttttaaaa------GACTGTAAAAGGTAATATAATCT-G--CC--ACCAA-TAT-ACAGTCATAC-AAGTACTT--TT-AAAGAAGAGTGATACAACTTTATTCCACTG-CTGCAACACGTAGCTAcagattatattttccgatctgac
gi|2 : cactaggaactcttatacactaaaataacaaatatagactgacttgtgttgaaatgtgcataccacattattccgtcttaaaa---A--AA-TA----GGTCTTAC-AAGTACTT--TT-GCAATAGACTAATAACCCTTTGTTCCACCG-CCGAAACATATGCCTAcagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|12 : ctgaaaataacaaaatatggacttgccgtaaatgtactgactctatactgatttggtgttactacgtactaactacatactgaatagtttacttcactagctgcagttatacaagtccatcttataaaactgtaaaaggtataataccaacccccacccccaccccacccctcaaaTTAAAGTAGAGTGATAAGCCTCTGTTTCGCTG-CTGAAACATGTcatgt
Alignments
lowQualScore : 1111111111 11111111 111111 2222222222222 11111111 666666666666666666666666666666 111 2222222 11
lowQualScore : 3 55 0 55 4444444444 888888 3 22222222 77777 0 3 3 3 0 222222 3333333333333 3 44 66666666 777 777 8888888 44 8888 4 99999 1 1 888888888888888888888888888888 66 666 66 5 4444444 77 1 0
lowQualScore : . .. . .. .......... ...... . ........ ..... . . . . . ...... ............. . .. ........ ... ... ....... .. .... . ..... . . .............................. .. ... .. . ....... .. . .
lowQualScore : 6 88 5 00 6666666666 444444 3 11111111 99999 4 6 6 6 2 999999 1111111111111 6 88 11111111 888 000 1111111 88 5555 4 66666 0 0 888888888888888888888888888888 99 555 44 7 3333333 77 0 7
consensus : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------TTACNA----------CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTAT----TA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------ACTTTT-ACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
Reference ( family-1316 ) : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------TTANNA----------CGTACTGACTACATACTGAC-TGGGGT--------ACTGA---CATGCGC---T---G---ACANAGGTAT----TA-CT----AGTCCATCTTATAAGACCGTNAAANGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------ACTTTTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
gi|1 : CTAGGAACTCTGA-AA---TGCGGTTA----------AAA-----CA-TT--------AAT----ATATATAC-T--AT-TTGTC------TTA-AA----------TGTACAATCGCCATACTGGC-
gi|1 : ----------AAA-----TGTAC--------AATCGCCATACTGGCATG-AT-TT----------TACTG----------CGTATTTACTACATAATGAA-TTTAGT--------GCTGG---TGCTCGC---T---A---GCTGAGGTAT----TA-CC----AGTCCGTCTAATAAAAGCGATAACGGTATTATAATA---------------------G-GTTC---A--AAC-T-AT-GGTTTTGG-GAAT-------ACTTT--ACAGTAGAGTGATAAGCCTCTGTTCCCCTGCTGCGACACGTAatgattttactgcgtatttactacataatgaatttagtgctggtgctcgctagctgaggtattaccagtccgtctaataaaagcgataacggtattataataggttcaaactatggttttgggaatactttacagtagagtgataagcctctgttcccctgctgcgacacgtacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|10 : ctaggaactctgaaatgcggttaaaacattaatatatatactatttgtcttACTAGCAACTCTGA-ATA-C-GCTT--A----------CA------TT-AC--------AAA----ATATAGAC-TG-AC-TCGCC------TTA-AA----------TGTACTGACTACACACTGGCATGGTCTTACTACACACTGACTGCATGCGC---T---G---ACTGAGGTAT----catgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|11 : GGGACTCTGA-AAC-CCGCTG--A----------AAA-----TG-AT--------AAT----GCATAGAC-TG-AC-TTGCC------TTA-AA----------TGTGCTGACGTCATACTGAC-a
gi|12 : ctTTAC-AAGTCGATCATACTGTT-AAAGTAGAGTGATAAGCCTCTGTTTCGCTGCTGAAACATGTactgtcttactttgtttaataatattttattg
gi|13 : acagataAACTTTGA-CAC-ATGCTG--A----------AAA-----AA-TC--------AAA----ATATGGAC-TG-AT-TTACC------TTA-AA----------TGTACTTACTCCATACTGGC-tactgattaactttaccaatgt
gi|14 : TAGGAACTCTGA-AAAACCGCTG--A----------AAG-----TG-AC--------AAT----AAACGGAC-AG-AC-TTTCC------TTAaagatctaact
gi|15 : CTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------ATT----ATACGGaatg
gi|16 : ACTAGGAACGCTGA-AAA-CTGCTG--G----------AAG-----TG-AC--------
gi|2 : AC-TG-AT-TTGGTG-----TTACTA----------CGTACTAACTACATACTGAA-TAGTTT--------ACTT----CACTAGC---T---G------CAGTTAT-----A-CA----AGTCCATCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACCCCCACCCCACCCC-T--C---A--AAA-A-ATAGGTCTTAC-AAGT-------ACTTTT-GCAATAGACTAATAACCCTTTGTTCCACCGCCGAAACATATGCCTAt
gi|3 : ctgaaaataacaaaatatggacttgccgtaaatgtactgactctatCACTAGGAACTCTTATACA-CT------A----------AAA-----TA-AC--------AA-----ATATAGAC-TG-AC-TTGTG------TTGAAA----------TGTGCATACCACATcatgt
gi|3 : --------ACTGA---CTTGTGT---T---G---AAATGTGCATACCACA-TT----ATTCCGTCTTAAAAGACTGTAAAAGGTAATATAATC---------------------T-G--CC--ACCAAT-ATAC-AGTCATAC-AAGT-------ACTTTT-AAAGAAGAGTGATACAACTTTATTCCACTGCTGCAACACGTAGCTAtattccgtcttaaaagactgtaaaaggtaatataatctgccaccaatatacagtcatacaagtacttttaaagaagagtgatacaactttattccactgctgcaacacgtagctacagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|4 : cactaggaactcttatacactaaaataacaaatatagCACTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------AAT----ATACGGAC-TG-AA-TTGCC------TTATTA----------CGTACTGACTACATACTGAC-TGGGGA--------ACTGA---AATACGT---T---G---ACACTGGTAC----TG-AA----AGTCAGTC------GACCGTTAAGGATATTATAATA---------------------C-G--C---A--AATAA-AC-GGTCTTAC-AAGA-------ACTTTTTACAGTAGAGTGATAACCCTCTGTTCCACCTCCGAAACACGTGGCTAcagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|5 : ACCAGAATTTCTGA-AAA-CTGCTG--AAAGCGACAATAAACGGACTG-ACTTGCCTGAAAT----GTGCTTAC-TACACATTGGCACGGGTTTACTG----------CGTCCTGACTACATACTGAC-TGAGGT--------ACTGA---CATACGCCGCT---G---ACACAGGTAT----TA-CT----AGTCCATCTTATATGACCGTCAAATGTATTTTAATA---------------------C-
gi|6 : CACCAGTACCTCAGA-AAT-AAGCTT--A----------AAA-----AA-AC--------AAT----ATATGGAC-TG-AC-TTGCC------TCAAAATTACTGACTCCATACTGACTACAAACTGAC-TGGCGT--------ACTGA---AATGCGC---T---T---ACTTAGGTAT----TATCTTTTAAGTTTATCTTATAAGACCGTAAATAGTGTTTTAATA---------------------C-A--CACAA--AAT---AC-TGTCTctaa
gi|7 : atCGC---T---G---GCTGAGGTAT----CA-CC----AGCCCCTTTTAAAAGACCGTAAAGATTATTATTATA---------------------CCG--CTT-A--AAT-A-GC---TCTAAG-AAGTT------A--TTTCACAGTAGAGTGATCAGCACCTGTTCCACTTTCGAAACACGTAGCTA
gi|8 : TGCTA----------CGTACTGACTACATACTGAC-TGAGGT--------ACTGA---CATGCGC---T---GCTGACAAAGGTAT----TA-CT----AGTCCATCTTATGAGACCGTCAAATGTATTATAATAC--------------------C-C--C---A--AAA-A-AC-GGTCTTACTACGT-------ACTGTCTACAcagattatattttccgatctgac
gi|9 : GTC------TTACTA----------CGTACTGTCTACATACTGAC-TGTTGC--------ACTGA---CATGCGC---TACTG---ACACAGGTAT----TA-CT----AGTCCATCTTATAAGACCGTCAAATGTATTACAATA---------------------C-C--CCCAA--AAT---AC-GGTCTT
Alignments
lowQualScore : 1111111111 11111111 1111111111111 1111111 11111111 11111111111 666666666666666666666666666666 111 1111111
lowQualScore : 3 55 0 44 3333333333 77777 3 11111111 88888 3 3 3 4444444444444 2222222 3 1 66666666 7777 11111111111 33 4 99999 1 1 1 888888888888888888888888888888 66 666 66 5 8888888 999 1 0
lowQualScore : . .. . .. .......... ..... . ........ ..... . . . ............. ....... . . ........ .... ........... .. . ..... . . . .............................. .. ... .. . ....... ... . .
lowQualScore : 6 88 5 66 5555555555 77777 1 22222222 77777 3 3 3 8888888888888 9999999 6 0 11111111 9999 22222222222 44 4 66666 7 0 9 888888888888888888888888888888 99 555 44 7 6666666 444 0 7
consensus : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
Reference ( family-1316 ) : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACNA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
gi|1 : CTAGGAACTCTGA-AA---TGCGGTTA----------AAA-----CA-TT--------AAT----ATATATAC-T--AT-TTGTC------T------TA
gi|1 : ----------AAA-----TGTAC--------AATCGCCATACTGGCATG-AT-TT----------------TACTG----CGTATTTACTACATAATGAA-TTTAGT--------GCTGG---TGCTCGC---T---A---GCTGAGGTATTA-CC----AGTCCGTCTAATAAAAGCGATAACGGTATTATAATA---------------------G-GTTC---A--AAC-T-AT-GGTTTTGG-GAAT-------AC---TTTACAGTAGAGTGATAAGCCTCTGTTCCCCTGCTGCGACACGTAaatgtacaatcgccatactggcatgattttactgcgtatttactacataatgaatttagtgctggtgctcgctagctgaggtattaccagtccgtctaataaaagcgataacggtattataataggttcaaactatggttttgggaatactttacagtagagtgataagcctctgttcccctgctgcgacacgtacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|10 : ctaggaactctgaaatgcggttaaaacattaatatatatactatttgtcttACTAGCAACTCTGA-ATA-C-GCTT--A----------CA------TT-AC--------AAA----ATATAGAC-TG-AC-TCGCC------T------TA-AA----TGTACTGACTACACACTGGCATGGTCTTACTACACACTGACTGCATGCGC---T---G---ACTGAGGTATcatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|11 : GGGACTCTGA-AAC-CCGCTG--A----------AAA-----TG-AT--------AAT----GCATAGAC-TG-AC-TTGCC------T------TA-AA----TGTGCTGACGTCATACTGAC-a
gi|12 : ctTTAC-AAGTCGATCATAC-T-GTTAAAGTAGAGTGATAAGCCTCTGTTTCGCTGCTGAAACATGTactgtcttactttgtttaataatattttattg
gi|13 : acagataAACTTTGA-CAC-ATGCTG--A----------AAA-----AA-TC--------AAA----ATATGGAC-TG-AT-TTACC------T------TA-AA----TGTACTTACTCCATACTGGC-tactgattaactttaccaatgt
gi|14 : TAGGAACTCTGA-AAAACCGCTG--A----------AAG-----TG-AC--------AAT----AAACGGAC-AG-AC-TTTCC------T------TAaagatctaact
gi|15 : CTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------ATT----ATACGGaatg
gi|16 : ACTAGGAACGCTGA-AAA-CTGCTG--G----------AAG-----TG-AC--------
gi|2 : CTG--A----------AAA-----TA-AC--------AAA----ATATG-----G-AC-TTGCC------G------TA-AA----TGTACTGACTt
gi|2 : AC-TG-AT-TTGGTG-----T------TACTA----CGTACTAACTACATACTGAA-TAGTTT--------ACTT----CACTAGC---T---G------CAGTTAT-A-CA----AGTCCATCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACCCCCACCCCACCCC-T--C---A--AAA-A-ATAGGTCTTAC-AAGT-------AC-T-TTTGCAATAGACTAATAACCCTTTGTTCCACCGCCGAAACATATGCCTActatactgatttggtgttactacgtactaactacatactgaatagtttacttcactagctgcagttatacaagtccatcttataaaactgtaaaaggtataataccaacccccacccccaccccacccctcaaaaaataggtcttacaagtacttttgcaatagactaataaccctttgttccaccgccgaaacatatgcctacatgt
gi|3 : ctgaaaataacaaaatatggacttgccgtaaatgtactgactctatCACTAGGAACTCTTATACA-CT------A----------AAA-----TA-AC--------AA-----ATATAGAC-TG-AC-TTGTG------T------TGAAA----TGTGCATACCACATcatgt
gi|3 : TATAGACTGAC-TTGTGT----------TGA---AATGTGC---A---T---ACCA---CATTA-TT-------CCGTCTTAAAAGACTGTAAAAGGTAATATAATC---------------------T-G--CC--ACCAAT-ATAC-AGTCATAC-AAGT-------AC-T-TTTAAAGAAGAGTGATACAACTTTATTCCACTGCTGCAACACGTAGCTAtattccgtcttaaaagactgtaaaaggtaatataatctgccaccaatatacagtcatacaagtacttttaaagaagagtgatacaactttattccactgctgcaacacgtagctacagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|4 : cactaggaactcttatacactaaaataacaaaCACTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------AAT----ATACGGAC-TG-AA-TTGCC------T------TATTA----CGTACTGACTACATACTGAC-TGGGGA--------ACTGA---AATACGT---T---G---ACACTGGTACTG-AA----AGTCAGTC------GACCGTTAAGGATATTATAATA---------------------C-G--C---A--AATAA-AC-GGTCTTAC-AAGA-------ACTT-TTTACAGTAGAGTGATAACCCTCTGTTCCACCTCCGAAACACGTGGCTAcagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|5 : ACCAGAATTTCTGA-AAA-CTGCTG--AAAGCGACAATAAACGGACTG-ACTTGCCTGAAAT----GTGCTTAC-TACACATTGGCACGGGTT------TACTG----CGTCCTGACTACATACTGAC-TGAGGT--------ACTGA---CATACGCCGCT---G---ACACAGGTATTA-CT----AGTCCATCTTATATGACCGTCAAATGTATTTTAATA---------------------C-
gi|6 : CACCAGTACCTCAGA-AAT-AAGCTT--A----------AAA-----AA-AC--------AAT----ATATGGAC-TG-AC-TTGCC------TCAAAATTACTGACTCCATACTGACTACAAACTGAC-TGGCGT--------ACTGA---AATGCGC---T---T---ACTTAGGTATTATCTTTTAAGTTTATCTTATAAGACCGTAAATAGTGTTTTAATA---------------------C-A--CACAA--AAT---AC-TGTCTctaa
gi|7 : atCGC---T---G---GCTGAGGTATCA-CC----AGCCCCTTTTAAAAGACCGTAAAGATTATTATTATA---------------------CCG--CTT-A--AAT-A-GC---TCTAAG-AAGT-------TA-T-TTCACAGTAGAGTGATCAGCACCTGTTCCACTTTCGAAACACGTAGCTA
gi|8 : ------TGCTA----CGTACTGACTACATACTGAC-TGAGGT--------ACTGA---CATGCGC---T---GCTGACAAAGGTATTA-CT----AGTCCATCTTATGAGACCGTCAAATGTATTATAATAC--------------------C-C--C---A--AAA-A-AC-GGTCTTACTACGT-------AC-TGTCTACAcagattatattttccgatctgac
gi|9 : GTC------T------TACTA----CGTACTGTCTACATACTGAC-TGTTGC--------ACTGA---CATGCGC---TACTG---ACACAGGTATTA-CT----AGTCCATCTTATAAGACCGTCAAATGTATTACAATA---------------------C-C--CCCAA--AAT---AC-GGTCTT
Alignments
lowQualScore : 1111111111 11111111 1111111111111 1111111 11111111 11111111111 666666666666666666666666666666 111 1111111
lowQualScore : 3 55 0 44 3333333333 77777 3 11111111 88888 3 3 3 4444444444444 3333333 3 1 66666666 7777 11111111111 33 4 99999 1 1 1 888888888888888888888888888888 66 666 66 5 8888888 999 1 0
lowQualScore : . .. . .. .......... ..... . ........ ..... . . . ............. ....... . . ........ .... ........... .. . ..... . . . .............................. .. ... .. . ....... ... . .
lowQualScore : 6 88 5 66 5555555555 77777 1 22222222 77777 3 3 3 8888888888888 1111111 6 0 11111111 9999 22222222222 44 4 66666 7 0 9 888888888888888888888888888888 99 555 44 7 6666666 444 0 7
consensus : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
Reference ( family-1316 ) : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
gi|1 : CTAGGAACTCTGA-AA---TGCGGTTA----------AAA-----CA-TT--------AAT----ATATATAC-T--AT-TTGTC------T------TA
gi|1 : ----------AAA-----TGTAC--------AATCGCCATACTGGCATG-AT-TT----------------TACTG----CGTATTTACTACATAATGAA-TTTAGT--------GCTGG---TGCTCGC---T---A---GCTGAGGTATTA-CC----AGTCCGTCTAATAAAAGCGATAACGGTATTATAATA---------------------G-GTTC---A--AAC-T-AT-GGTTTTGG-GAAT-------AC---TTTACAGTAGAGTGATAAGCCTCTGTTCCCCTGCTGCGACACGTAaatgtacaatcgccatactggcatgattttactgcgtatttactacataatgaatttagtgctggtgctcgctagctgaggtattaccagtccgtctaataaaagcgataacggtattataataggttcaaactatggttttgggaatactttacagtagagtgataagcctctgttcccctgctgcgacacgtacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|10 : ctaggaactctgaaatgcggttaaaacattaatatatatactatttgtcttACTAGCAACTCTGA-ATA-C-GCTT--A----------CA------TT-AC--------AAA----ATATAGAC-TG-AC-TCGCC------T------TAA-A----TGTACTGACTACACACTGGCATGGTCTTACTACACACTGACTGCATGCGC---T---G---ACTGAGGTATcatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|11 : GGGACTCTGA-AAC-CCGCTG--A----------AAA-----TG-AT--------AAT----GCATAGAC-TG-AC-TTGCC------T------TAA-A----TGTGCTGACGTCATACTGAC-a
gi|12 : ctTTAC-AAGTCGATCATAC-T-GTTAAAGTAGAGTGATAAGCCTCTGTTTCGCTGCTGAAACATGTactgtcttactttgtttaataatattttattg
gi|13 : acagataAACTTTGA-CAC-ATGCTG--A----------AAA-----AA-TC--------AAA----ATATGGAC-TG-AT-TTACC------T------TAA-A----TGTACTTACTCCATACTGGC-tactgattaactttaccaatgt
gi|14 : TAGGAACTCTGA-AAAACCGCTG--A----------AAG-----TG-AC--------AAT----AAACGGAC-AG-AC-TTTCC------T------TAaagatctaact
gi|15 : CTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------ATT----ATACGGaatg
gi|16 : ACTAGGAACGCTGA-AAA-CTGCTG--G----------AAG-----TG-AC--------
gi|2 : CTG--A----------AAA-----TA-AC--------AAA----ATATG-----G-AC-TTGCC------G------TAA-A----TGTACTGACTt
gi|2 : AC-TG-AT-TTGGTG-----T------TACTA----CGTACTAACTACATACTGAA-TAGTTT--------ACTT----CACTAGC---T---G------CAGTTAT-A-CA----AGTCCATCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACCCCCACCCCACCCC-T--C---A--AAA-A-ATAGGTCTTAC-AAGT-------AC-T-TTTGCAATAGACTAATAACCCTTTGTTCCACCGCCGAAACATATGCCTActatactgatttggtgttactacgtactaactacatactgaatagtttacttcactagctgcagttatacaagtccatcttataaaactgtaaaaggtataataccaacccccacccccaccccacccctcaaaaaataggtcttacaagtacttttgcaatagactaataaccctttgttccaccgccgaaacatatgcctacatgt
gi|3 : ctgaaaataacaaaatatggacttgccgtaaatgtactgactctatCACTAGGAACTCTTATACA-CT------A----------AAA-----TA-AC--------AA-----ATATAGAC-TG-AC-TTGTG------T------TGAAA----TGTGCATACCACATcatgt
gi|3 : TATAGACTGAC-TTGTGT----------TGA---AATGTGC---A---T---ACCA---CATTA-TT-------CCGTCTTAAAAGACTGTAAAAGGTAATATAATC---------------------T-G--CC--ACCAAT-ATAC-AGTCATAC-AAGT-------AC-T-TTTAAAGAAGAGTGATACAACTTTATTCCACTGCTGCAACACGTAGCTAtattccgtcttaaaagactgtaaaaggtaatataatctgccaccaatatacagtcatacaagtacttttaaagaagagtgatacaactttattccactgctgcaacacgtagctacagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|4 : cactaggaactcttatacactaaaataacaaaCACTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------AAT----ATACGGAC-TG-AA-TTGCC------T------TATTA----CGTACTGACTACATACTGAC-TGGGGA--------ACTGA---AATACGT---T---G---ACACTGGTACTG-AA----AGTCAGTC------GACCGTTAAGGATATTATAATA---------------------C-G--C---A--AATAA-AC-GGTCTTAC-AAGA-------ACTT-TTTACAGTAGAGTGATAACCCTCTGTTCCACCTCCGAAACACGTGGCTAcagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|5 : ACCAGAATTTCTGA-AAA-CTGCTG--AAAGCGACAATAAACGGACTG-ACTTGCCTGAAAT----GTGCTTAC-TACACATTGGCACGGGTT------TACTG----CGTCCTGACTACATACTGAC-TGAGGT--------ACTGA---CATACGCCGCT---G---ACACAGGTATTA-CT----AGTCCATCTTATATGACCGTCAAATGTATTTTAATA---------------------C-
gi|6 : CACCAGTACCTCAGA-AAT-AAGCTT--A----------AAA-----AA-AC--------AAT----ATATGGAC-TG-AC-TTGCC------TCAAAATTACTGACTCCATACTGACTACAAACTGAC-TGGCGT--------ACTGA---AATGCGC---T---T---ACTTAGGTATTATCTTTTAAGTTTATCTTATAAGACCGTAAATAGTGTTTTAATA---------------------C-A--CACAA--AAT---AC-TGTCTctaa
gi|7 : atCGC---T---G---GCTGAGGTATCA-CC----AGCCCCTTTTAAAAGACCGTAAAGATTATTATTATA---------------------CCG--CTT-A--AAT-A-GC---TCTAAG-AAGT-------TA-T-TTCACAGTAGAGTGATCAGCACCTGTTCCACTTTCGAAACACGTAGCTA
gi|8 : ------TGCTA----CGTACTGACTACATACTGAC-TGAGGT--------ACTGA---CATGCGC---T---GCTGACAAAGGTATTA-CT----AGTCCATCTTATGAGACCGTCAAATGTATTATAATAC--------------------C-C--C---A--AAA-A-AC-GGTCTTACTACGT-------AC-TGTCTACAcagattatattttccgatctgac
gi|9 : GTC------T------TACTA----CGTACTGTCTACATACTGAC-TGTTGC--------ACTGA---CATGCGC---TACTG---ACACAGGTATTA-CT----AGTCCATCTTATAAGACCGTCAAATGTATTACAATA---------------------C-C--CCCAA--AAT---AC-GGTCTT
blockSeqs : T AA . AAGCGACAAT CGGAC T TTGCCTGA TCGCC A C A ACGGGTT CTGACTC A T TACTACAC CTGC CGCTG TG T TTTTA A A G ACCCCCACCCCCACCCCACCCCTC CC AT AG T CGATCAT TT G
blockSeqs : . A . . . . . A . . . TCAAAAT CTA . T . C TGCTG CA . A G A G CACACA . AA A . . TG C
blockSeqs : . C . . . . . T . . . GT AAA . T . A TACTG AC . T G T G CCGCTT . A G . . T A
blockSeqs : . C . . . . . A . . . T TTA . G . A TG AC . A A C T CCCCCA . A T . . T C
blockSeqs : . A . . . . . T . . . T CTG . G . C TG TT . T A A A TGCC . A G . . T G
blockSeqs : . A . . . . . T . . . T CTA . C . A AT TG . C C A A CCCC . . G . . T
blockSeqs : . A . . . . . A . . . T CTA . G . C TG AA . T A C T CGC . . .
blockSeqs : . A . . . . . T . . . G AA . T . C TT AC . T A C T
blockSeqs : . A . . . . . T . . . T AA . TG C
blockSeqs : . T . . . . . T . . . T AA .
blockSeqs : . . . . . . . . . T AA
blockSeqs : . . . . .
blockSeqCons : A* ** CNCCC************************* T**
originalCons : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATA---------------------C-G--C---A--AAT-A-AC-GGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
finalCons : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGA---CATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATAATACNCCC-------------------------A--AAT-A-AC-GGTCTTAC-AAGT-------ACT--TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
Alignments
lowQualScore : 1111111111 11111111 1111111111111 1111111 11111111 11111111111 11111 333333333333333333333 1111 1111111
lowQualScore : 3 55 0 44 3333333333 77777 3 11111111 88888 3 3 3 4444444444444 3333333 3 1 66666666 7777 11111111111 33 4 99999 1 1 1 66 11111 777777777777777777777 3333 1 5 8888888 999 1 0
lowQualScore : . .. . .. .......... ..... . ........ ..... . . . ............. ....... . . ........ .... ........... .. . ..... . . . .. ..... ..................... .... . . ....... ... . .
lowQualScore : 6 88 5 66 5555555555 77777 1 22222222 77777 3 3 3 8888888888888 1111111 6 0 11111111 9999 22222222222 44 4 66666 7 0 9 11 11111 666666666666666666666 4444 4 7 6666666 444 0 7
consensus : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGAC---ATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATA--A-----TACG-CC-C---------------AAAN-A-ACGGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
Reference ( family-1316 ) : CACTAGGAACTCTGA-AAA-CTGCTG--A----------AAA-----TG-AC--------AAT----ATACGGAC-TG-AC-TTGCC------T------TACTA----CGTACTGACTACATACTGAC-TGGNGT--------ACTGAC---ATGCGC---T---G---ACNNAGGTATTA-CT----AGTCCGTCTTATAAGACCGTNAAAGGTATTATA--A-----TACN-CC-C---------------AAAT-A-ACGGTCTTAC-AAGT-------AC-T-TTTACAGTAGAGTGATAAGCCTCTGTTCCACCGCCGAAACACGTAGCTA
gi|1 : CTAGGAACTCTGA-AA---TGCGGTTA----------AAA-----CA-TT--------AAT----ATATATAC-T--AT-TTGTC------T------TA
gi|1 : ----------AAA-----TGTAC--------AATCGCCATACTGGCATG-AT-TT----------------TACTG----CGTATTTACTACATAATGAA-TTTAGT--------GCTGGT---GCTCGC---T---A---GCTGAGGTATTA-CC----AGTCCGTCTAATAAAAGCGATAACGGTATTATA--A-----TAGG-TT-C---------------AAAC-T-ATGGTTTTGG-GAAT-------AC---TTTACAGTAGAGTGATAAGCCTCTGTTCCCCTGCTGCGACACGTAaatgtacaatcgccatactggcatgattttactgcgtatttactacataatgaatttagtgctggtgctcgctagctgaggtattaccagtccgtctaataaaagcgataacggtattataataggttcaaactatggttttgggaatactttacagtagagtgataagcctctgttcccctgctgcgacacgtacatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|10 : ctaggaactctgaaatgcggttaaaacattaatatatatactatttgtcttACTAGCAACTCTGA-ATA-C-GCTT--A----------CA------TT-AC--------AAA----ATATAGAC-TG-AC-TCGCC------T------TAA-A----TGTACTGACTACACACTGGCATGGTCTTACTACACACTGACTGCATGCGC---T---G---ACTGAGGTATcatgtagcaacactgttacagactaactttaccaatgtgactgcatactaatatcaaa
gi|11 : GGGACTCTGA-AAC-CCGCTG--A----------AAA-----TG-AT--------AAT----GCATAGAC-TG-AC-TTGCC------T------TAA-A----TGTGCTGACGTCATACTGAC-a
gi|12 : ctTTAC-AAGTCGATCATAC-T-GTTAAAGTAGAGTGATAAGCCTCTGTTTCGCTGCTGAAACATGTactgtcttactttgtttaataatattttattg
gi|13 : acagataAACTTTGA-CAC-ATGCTG--A----------AAA-----AA-TC--------AAA----ATATGGAC-TG-AT-TTACC------T------TAA-A----TGTACTTACTCCATACTGGC-tactgattaactttaccaatgt
gi|14 : TAGGAACTCTGA-AAAACCGCTG--A----------AAG-----TG-AC--------AAT----AAACGGAC-AG-AC-TTTCC------T------TAaagatctaact
gi|15 : CTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------ATT----ATACGGaatg
gi|16 : ACTAGGAACGCTGA-AAA-CTGCTG--G----------AAG-----TG-AC--------
gi|2 : CTG--A----------AAA-----TA-AC--------AAA----ATATG-----G-AC-TTGCC------G------TAA-A----TGTACTGACTt
gi|2 : AC-TG-AT-TTGGTG-----T------TACTA----CGTACTAACTACATACTGAA-TAGTTT--------ACTT-C---ACTAGC---T---G------CAGTTA-TA-CA----AGTCCATCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACC-CC-CACCCCACCCCTCAAAAAAT-A---GGTCTTAC-AAGT-------AC-T-TTTGCAATAGACTAATAACCCTTTGTTCCACCGCCGAAACATATGCCTActatactgatttggtgttactacgtactaactacatactgaatagtttacttcactagctgcagttatacaagtccatcttataaaactgtaaaaggtataataccaacccccacccccaccccacccctcaaaaaataggtcttacaagtacttttgcaatagactaataaccctttgttccaccgccgaaacatatgcctacatgt
gi|3 : ctgaaaataacaaaatatggacttgccgtaaatgtactgactctatCACTAGGAACTCTTATACA-CT------A----------AAA-----TA-AC--------AA-----ATATAGAC-TG-AC-TTGTG------T------TGAAA----TGTGCATACCACATcatgt
gi|3 : TATAGACTGAC-TTGTGT----------TGAA---ATGTGC---A---T---ACCA---CATTA-TT-------CCGTCTTAAAAGACTGTAAAAGGTAATATA--A-----TCTG-CCAC---------------CAAT-ATACAGTCATAC-AAGT-------AC-T-TTTAAAGAAGAGTGATACAACTTTATTCCACTGCTGCAACACGTAGCTAtattccgtcttaaaagactgtaaaaggtaatataatctgccaccaatatacagtcatacaagtacttttaaagaagagtgatacaactttattccactgctgcaacacgtagctacagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|4 : cactaggaactcttatacactaaaataacaaaCACTAGGAACTCTGA-AAA-CTGCTG--A----------AAG-----TG-AC--------AAT----ATACGGAC-TG-AA-TTGCC------T------TATTA----CGTACTGACTACATACTGAC-TGGGGA--------ACTGAA---ATACGT---T---G---ACACTGGTACTG-AA----AGTCAGTC------GACCGTTAAGGATATTATA--A-----TACG----C---------------AAATAA-ACGGTCTTAC-AAGA-------ACTT-TTTACAGTAGAGTGATAACCCTCTGTTCCACCTCCGAAACACGTGGCTAcagattaacttcaccattgttgctaaccgccgactaatattaaat
gi|5 : ACCAGAATTTCTGA-AAA-CTGCTG--AAAGCGACAATAAACGGACTG-ACTTGCCTGAAAT----GTGCTTAC-TACACATTGGCACGGGTT------TACTG----CGTCCTGACTACATACTGAC-TGAGGT--------ACTGAC---ATACGCCGCT---G---ACACAGGTATTA-CT----AGTCCATCTTATATGACCGTCAAATGTATTTTA--A-----TAC
gi|6 : CACCAGTACCTCAGA-AAT-AAGCTT--A----------AAA-----AA-AC--------AAT----ATATGGAC-TG-AC-TTGCC------TCAAAATTACTGACTCCATACTGACTACAAACTGAC-TGGCGT--------ACTGAA---ATGCGC---T---T---ACTTAGGTATTATCTTTTAAGTTTATCTTATAAGACCGTAAATAGTGTTTTA--A-----TACA-CA-C---------------AAAA-T-ACTGTCTctaa
gi|7 : atCGC---T---G---GCTGAGGTATCA-CC----AGCCCCTTTTAAAAGACCGTAAAGATTATTATT--A-----TACCGCT-T---------------AAAT-A-GC--TCTAAG-AAGT-------TA-T-TTCACAGTAGAGTGATCAGCACCTGTTCCACTTTCGAAACACGTAGCTA
gi|8 : ------TGCTA----CGTACTGACTACATACTGAC-TGAGGT--------ACTGAC---ATGCGC---T---GCTGACAAAGGTATTA-CT----AGTCCATCTTATGAGACCGTCAAATGTATTATA--A-----TAC--CC-C---------------AAAA-A-ACGGTCTTACTACGT-------AC-TGTCTACAcagattatattttccgatctgac
gi|9 : GTC------T------TACTA----CGTACTGTCTACATACTGAC-TGTTGC--------ACTGAC---ATGCGC---TACTG---ACACAGGTATTA-CT----AGTCCATCTTATAAGACCGTCAAATGTATTACA--A-----TACC-CC-C---------------AAAA-T-ACGGTCTT