lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777 333333333 11 11111111111111 3 2222222222222222 111111111111111111 22222222 1111 2222222 4444444444444 1 3333333333333 1 33333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1
lowQualScore : 0 555 999999999999999999999 4 666666 555555555 33 2 55 444 44444444444444 33 1 2 2 444 444 6 2 33 6 4 6 0 4444444444444444 3 222222222222222222 33333333 5555 7777 9999999 8888888 4 9999999999999 777 4 9 7777 3 0000000000000 5 22222 3 3 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1
lowQualScore : . ... ..................... . ...... ......... .. . .. ... .............. .. . . . ... ... . . .. . . . . ................ . .................. ........ .... .... ....... ....... . ............. ... . . .... . ............. . ..... . . ................................................................................................ .
lowQualScore : 4 888 666666666666666666666 9 111111 111111111 44 2 99 111 77777777777777 44 9 5 4 444 777 0 9 99 9 8 0 6 7777777777777777 2 222222222222222222 22222222 5555 7777 1111111 9999999 4 7777777777777 888 4 3 2222 3 2222222222222 0 00000 3 3 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5
consensus : ATACCTGTCAAGTCT---CA---C-GGTTTC--GCC--G--AGTCTCACGAT------TTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTCTGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCG---------------TCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAA----ATTTGA---AAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCC--------C----AGAACACACCACAGACGATCTAGGAAT----CA-AAAA-TTTT-----C-----TG-------G----------------------GGG----------------G-------G------------------------CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Reference ( gi|4 ) : ATACCTGTCAAGTCT---CA---T-T-TTTCAAGTC--A--AGTTTCACGAT------TTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCAT-TT-AAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCCGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGCGTCAATGTAAACAT-ATGGCT---------------TCGTC------TCC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAA---T-TTTGA---AAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAATTAATTGACTGAAACTGTTGTAGAAAA---CA-CCC--------A----AGAAAACACCACAGACGATCTAGGAAT----AA-AAAA-TTTT-----C-----TG-------G----------------------GGG----------------G-------G------------------------CATGCCCCTGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|9 : ATACCTGTCAAGTCT---AACGGT-T-TTGCC-GT---G--AGTTTCACGAT------CT-GGCAATAAAATCACGGTCTCACGATGCA--TAT--GT--AATTTCTCACGCAT-TT-CAATTAGAACAAAATTCACGAAAA---AATATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---TGTGT---TAGTTGTGTCTGACCTAATG-TCAGCCAC--CGGAACTGGTGTTAGTAAATACTATACTAACACATAATAATTGTTACCCGGTGTCAATGCAAACATCATGGCG---------------TCGTC------TGC---------TAGTAGC------TCGCCTC----A----
gi|31 : cATACCTGTCAAGTCT---CA---CGG-TTTC--GCCGTG--AGTCTCACGaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattccctagcatcacattacagcg
gi|1 : TACCTGTCAAGTCT---CA---C-GGTTTC--GCC--GTGAGTCTCACGAT------TTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--TATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAT---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TATAT---TAGTTGTGTCTGACCTAATG-TTAGCCACGGCGGAACCGGTGTTAGT-----------------ATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCG---------------TCGTT------TGC---------T
gi|12 : TACCTGTCAAGTCT---CA---C-G-GTTCC-GCC--GTGAGTCTCACGAT------TTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACACAT-TT-CAATTAAAACAAAATTCACGAAAA---TAATTACTATGGTTTTATGAATA--------------AATCG--G--------T-TG----G---TGTAT---TAGTTGTGTCTGACCTAATG-TTAGCCAC--CAGAACCGGTGTTAGTATATAAT--------ACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCG---------------TCGTC------TGC---------TAGtgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccctagcatcaaatcactgcgttgctgtagctgaattactgtaaatttattataccaaaatttgaaaaatataaaaaaacctgttgtagaaaacaccccaaaacacaccccagaacacaccccagacgatctaggaatcaaatttttttcgggggggggggggtggggggtgagtggggggtatgcccccgaaaccccctagaatattttctcactctaaggttcatttgacccttgacagct
gi|7 : ACCAGTCAAGTCT---CACGGT-T-TTGCCG--C--G--AGTCTCACGAT------TTTAGCAATGAAATCTCGGTCTCACGCTA------T--GT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACAAAA------------------------ATA--------------AAT----------ACTA-TGGTTCG---TGTAT---TAGTTGTGTCTGACCTAATG-TTAGCCAT--CAGAACCGGTTTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCTACTAAGTAAAAAAAATAATT------CCC---------TAACA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACTAA---AATTTGA---AAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAAATAATTGATTGAAACTGTTGCAGAAAA---CA-CCC--------C----AGAACACACCACAGACGATCTAGGAAT-------CAAA-TTTT-----T-----T-------------------------------------------------------------------------------------TTTCCC-GAAATCCTCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtgctagtagctcgccttaaaaaaaga
gi|11 : ACCTGTCAAGTCT---TACGGT-T-TTGCC-GT---G--AGTCTCAGGAT------TTTGGCAATAAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAGTACTACGGTTTTATGAATA--------------AATCA--GTTAAAACAT-TGGTTTG---TGTAT---AAGTTGTGTCTGACCTTATG-TTAGCCAC--CGGAACC---------------------AACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCG---------------TCGTC------TGCTAGTGCTAGTAGCA--------TCACATC----A----CAACGTT---G---CT-------GTTGCTGAATTgc
gi|10 : CTGTGAAATGTAAACG---T-T-TGTCAAACC--A--G---TCGAGAT----------GCAATGAAATCACAGTTTCATGTTG----------T--AATTTCTCTAACAT-TG-CTATTAAAACAAAATGCACAAAAA---TAAATAATCGGGCTTTATGAATAGTTCATATCCAATGAGTCGTTGCAAAGACATCTGATTTGACCTTTATGAATAGTTGTGTCTGACCCAATGTTTAGTAAC--CAGAAATGTTGTAAGTATATAActaaagtagaaatactttattttactt
gi|30 : cttgaaCTGTCAAGTAT---CA---C-GGTTTC--GCC------GTCTCTAGAT------TTTGGCAATGAAATattttttttttttttcataaaaacattgaactaagcactacaccatgtgcagctttgttgtggcttaattactgtaaattttaacaaacaaatccatacataactactga
gi|2 : TGTCAAGTCT---CA---CAG-TTTC--GCC--GTGAGTCTCACGAT------TTTGGTAATGAAATCACGGTCTCACGCTA------T--GT--AATTTC-------------AATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---CGTAT---TAGTTGTATCTGAACTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATA-------------CATAATAATCTTTACCCGCTGTCAATGTAAACAT-
gi|29 : tcaTGTCAAGTAT---CA---C-GGTTTC--GCC------GTCTCTAGAT------TTTGGCAATGAAATCtatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatccttagcatcacatcacagcgttgctttaactgaattactgtaaatttattacaccaaaagttgaaaaaaaaatcataccaattgaatgtatattttggtaaaataattgactgaaacttttgtagaaaacacccaaacacaccacagacgatctaggaatcaaaaattttcgtgggggtgcccgacaccccctagaatattttctcactctaaggttcatttgagccttgaca
gi|28 : tTGTCAAGTAT---CA---C-GGTTTC--GCC------GTCTCTAGAT------TTTGGCAATGAAATC
gi|8 : tCAAGTAT---CA---C-GGTTTCGCCTT--G--AGTCTCACGAT------TTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCACACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATTGTTTTATGAATA--------------AACTT--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTCTGACCTATTG-TTAGCCAC--CGGAACCCGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCG---------------TCGTCTGTTAGTGC---------TAGTAGC------TCGCCTCCAAAA----AAGCGTCAAAA---CTCAAAGAAGTAGCTGAATTAATGTAAATTTATTA-CACCAA---CATTTG----AAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAAATAATTGACTGAAACTGTTGTAAAAAAACCCA-CCC--------C----AGAACACACCACAGACGATCTAGGAATCA--AA-AAAA-TT-------------TG-------G----------------------GGG----------------G-------
gi|14 : cgCATGTC--A--AGTTTTACGGTCACCGTTTTGACAATGAAATCACGGTCTCACGCTG-A--C-TAGGT--AACTTTTTATGCGT-TT-CAATTAAAACAAAATTTACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---T----------TTGTGTCTGACGTAATG-TTAGCCAC--CGGAACCGGTGTTAG-------TATACTAACAC--AATAATCGTTACTCGGTGTCAATATAAACATCATGGC----------------TCGTC------TGC---------TAGagg
gi|32 : cataGTC--A--AGTCTCACGAT------TTTGACAATGAAATCACGGtgctaatg
gi|15 : ct--A--AGTCTCACGAT------TTTGGCAATGAAATCA--GTCTCACGCTG-AGTA-T--GT--AATTTCTCACGCAT-TT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTCTGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGCG---------------TCG
gi|6 : --AGTCTTACGAT------TTTGGCAATGAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATAGTTTTATTATTA--------------AATCG--GTAAAAACAT-TGGT-----------------------CTGACTTAATG-TTAGCCAC--CGGAACCGGTATTAGTAG-----------------------CGTTACTCG-TGTCAATGTAAACATCATGGCG---------------TCATC------TGC---------TAGTACTAGTAACTCGCCTCCAAAA----TAGCGTC---AAAACTCAAAGAAGTAGCCGAATTACTGTTAATTTATTA-CACCAA---AATTTGA---AAAAAAAAAT-CATACAAATTTAATGAAAATTTTGGTGAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCC--------C----AGAACACACCACAGACGATCTAGGAAT-----C-AAAT-TTTT-----CAGGGGTG-------GGGGGGTGGGGGGGGGTGGGGGTGGG----------------G-------G------------------------TATGTCCCCGAAACCCCATAGAATATTTTCTCACTCTAAGGTTCATTTGAGC
gi|5 : gtg--AGTCTCACGAT------TTTGGCAATGAAATCACAGT---------------T--GT--AATTTCTCACGCAT-TTTCAATTAAAACAAAATTCATGAAAAAAATAACTACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCTGATCTAATG-TTAGCCAC--CAGAACTGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCTGTGTCAATGTAAACATCATGGCT---------------
gi|3 : tg--AGTCTCACGAT------TTTGGCAATGAACTCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--ATAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|25 : g--AATCTCACGAT------TTTGGCAATGAAATCACGGTCTCAattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|23 : tctatcataccagttttgctgtgAT------TTTG-CAATGAAATCAGAGTCTCGCACTA------T--GT--AATTTCTCAACCAT-TT-CAAGTAAAACAAAATGCATAAAAT---TAAATACa
gi|22 : tCAATTAAATCATGGTCTCACGCTG-A--C-T--ATAAAATTTCTCACGCATATT-AA
gi|16 : tatacttaccaagtcccacggtaacgctcattata-T--GT--AATTTCTCACGCAT-TT-CAATTAAAACAAAATTCAGGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTCTGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCAGTGTCAATGTCAACATCATGGCG---------------TCATC------TGC---------TAGc
gi|17 : TTTCTCACGCAT-TT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTCTGACCTAATG-TAAGCCAC--CGGAACCAG-GTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGCG---------------TCGTC------T
gi|24 : TCTCACGCAT-TT-CAATTAAAACAAAATTCACGAAAA---TAAATACAATGGTTTTATGAATA--------------AATCG--TT--AAATAT-TAG-TTG---TGg
gi|7 : GTGTTAGTATATTATATACTAAAAC
gi|8 : accagtcaagtctcacggttttgccgcgagtctcacgattttagcaatgaaatctcggtctcacgctatgtaatttctcacgcatttcaattaaaacaaaattcacaaaaataaatactatggttcgtgtattagttgtgtctgacctaatgttagccatcagaaccgGTGTTAGTATATTATATACTAACACataataatcgttacccggtgtcaatgtaaacatcatggctactaagtaaaaaaaataattccctaacatcacatcacagcgttgctgtagctgaattactgtaaatttattacactaaaatttgaaaaaaatcatacaaatttaatgaaaattttggtaaaataattgattgaaactgttgcagaaaacaccccagaacacaccacagacgatctaggaatcaaatttttttttcccgaaatcctctagaatattttctcactctaaggttcatttgagccttgacagc
gi|15 : cgcaagtatcacggtttcgccttgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgtaatttcacacgcatttcaattaaaacaaaattcacgaaaataaatactattgttttatgaataaacttgtaaaaacattggttcgtgtattagttgtgtctgacctattgttagccaccggaacccGTGTTAGTATATTATATACTAACACataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtctgttagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaagtagctgaattaatgtaaatttattacaccaacatttgaaaaaatcatacaaatttaatgaaaattttggtaaaataattgactgaaactgttgtaaaaaaacccaccccagaacacaccacagacgatctaggaatcaaaaaaatttggggggagg
gi|5 : aagtctcacgattttggcaatgaaatcagtctcacgctgagtatgtaatttctcacgcatttcaattaaatcaaaatcaacaaaaataaatactatggttttatgaataaatcagtaaaaacattggttcgtgtatttgttgtgtctgacctaatgttagccaccggaaccaGTGTTAGTATATTATATACTAACACataataatcgttactgggtgtcaatgtaaacatcatggcgtcg
gi|16 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactgGTGTTAGTATATTATATACTAACACataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|17 : tgtaatttctcacgcatttcaattaaaacaaaattcaggaaaataaatactatggttttatgaataaatcagtaaaaacattggttcgtgtattagttgtgtctgacctaatgttagccaccggaaccgGTGTTAGTATATTATATACTAACataataatcgttacccagtgtcaatgtcaacatcatggcgtcatctgctag
gi|3 : tttctcacgcatttcaattaaatcaaaatcaacaaaaataaatactatggttttatgaataaatcagtaaaaacattggttcgtgtatttgttgtgtctgacctaatgtaagccaccggaaccagTCATTACCCGGTGTCAATGTAAACCTCATGGCG---------------TCGTC------TGC---------TAGataataatcgttactgggtgtcaatgtaaacatcatggcgtcgtctg
gi|1 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgTGTAAAAAT-ATAA-T---------------TC----------CC---------TAGCA--------TCAAATC----A----CTGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-TACCAA------------------------------AATTTGA--AAAAT----ATAAA--AA-------AACCTGTTGTAGAAAA---CA-CCCCAAAACACACCCCAGAACACACCCCAGACGATCTAGGAAT----CA-AATT-TTTT-----T-----CG-------G----------------------GGG----------------G-------GGGGGGGTGGGGGGTGAGTGGGGGGTATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGACCCTTGACAtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|5 : tacctgtcaagtctcacggtttcgccgtgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgttatttctcacgcatttcaattaaaacaaaattcacgaaattaaatactatggttttatgaataaatcggtaaaaacattggttcgtatattagttgtgtctgacctaatgttagccacggcggaaccggtgttagtataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtttgcttgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgtttttttTGTAAAAAA-ATAA-T---------------TC----------CC---------TAGCA--------ACACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAA-T-TTGAA---AAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAAATTATTGACTGAAACTGTTGTAGAAAA---CA-CCC--------C----AAAACACACCACAGACGATCTAGGAAT-----A-AATT-TTTT-----T-----TC-------G----------------------GGG----------------G-------G------------------------CA------TGAAACCCCCTGGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAgct
gi|3 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactggtgttagtatataatatactaacacataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgttttttttTGTAAACGA-ATAA-T---------------TC----------CC---------TAGCA--------TCACATC----A----CAGCATT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAA---AATTTGAGAAAAA---AAAT-CATACAAATTTAATGAAAATTTTGGTAAAATAATGGACTGAAACTGTTGTAGAAAA---CA-ACT--------C----AGAACGTACCACAGACAATCTAGGAAT----CG-AAAA-TTTTA----C-----TG-------G----------------------GGG----------------G-------G-------------------------------------------GGGATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAgc
gi|9 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgtcattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgttCC---------TAGCA--------TCACATT----A----CAGCG
gi|2 : catacctgtcaagtctaacggttttgccgtgagtttcacgatctggcaataaaatcacggtctcacgatgcatatgtaatttctcacgcatttcaattagaacaaaattcacgaaaaaatatactatggttttatgaataaatcggttaaaacattggttcgtgtgttagttgtgtctgacctaatgtcagccaccggaactggtgttagtaaatactatactaacacataataattgttacccggtgtcaatgcaaacatcatggcgtcgtctgctagtagctcgcctcaaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattcCT---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------TTAACTGAATTACTGTAAATTTATTA-CACCAAAAGT-TGAAA---AAA---AAAT-CATACCAATTGAATGTATATTTTGGTAAAATAATTGACTGAAACTTTTGTAGAAAA---CA-CCC--------A------AACACACCACAGACGATCTAGGAAT----CA-AAAA-TTTT-----CG----TG-------G----------------------GGG---------------------------------------------------TGCCC--GACACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|10 : tcatgtcaagtctcacagtttcgccgtgagtctcacgattttggtaatgaaatcacggtctcacgctatgtaatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcgcgtattagttgtatctgaactaatgttagccaccggaaccggtgttagtatacataataatctttacccgctgtcaatgtaaacattatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatcAGCA--------CTACACC----ATGTGCAGCTTT---G---TT-------GTGGCTTAATTACTGTAAATT--TTA--AC------------A---AAC---AAATCCATACA
gi|13 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatgcaatgaaatcacagtttcatgttgtaatttctctaacattgctattaaaacaaaatgcacaaaaataaataatcgggctttatgaatagttcatatccaatgagtcgttgcaaagacatctgatttgacctttatgaatagttgtgtctgacccaatgtttagtaaccagaaatgttgtaagtatataaattttttttttttttcataaaaacattgaactaTTATTATCACC--------TTGA---ACA---AATT-CATATAA--TTACTGAAAATTCTGGTAAAATAATTGAATACCACTGTTGTGTAAAT---CA-CAC--------C----AGACCGCATCACAGACAATCTGGtaactactga
gi|18 : aaaaggtgacaaaactaaaaatattttataatagcaaatttaatgctaaatgttctcagaaataccctgttattatcaccttgaacaaattcatataaaaactaaaaatataagtatggaggtatagctgtttataatagcaaatttaatgctaaatggtctcagaaataccctgTAATGAAAATTTTGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCC--------C----AGAACCCACCACAGACGATCTAGGAAT----CA-AAAATTTTT-----C-----AGGAGGGGTG----------------------GGG----------------G-------G------------------------CATGCCCC-AAAACCCCCTAGAATATTTTCTTACTCTAAGGTTCATTTGAGCTTTGACA
gi|19 : TTTTGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CACCCC--------C----AGAACACACCACAGACGATCTAGGAAT----CA-ATTT-TTTT-----T-----CG-------G----------------------GGGGGGGGGGGGGGAAGATG-------G------------------------CATGTCCCCGAAACCCTCTAGAATAT----TCACTCTAAGGTTCATTTGAGCCTTGAg
gi|20 : TTGACTGAAACTGTTGTAGAAA----CA-CCC--------C----AGAACACACCACAGATGATGTAGGAATCAAAAA-AAAA-TTTTGGGGGT-----TG-------G----------------------GGG----------------G-------GTGGG--------------------CATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACAaag
gi|21 : GACTGAAACTGTTGTAGAAA----CA-CCC--------C----AGAACACACCACAGATGATGTAGGAATCAAAAA-AAAA-TTTTGGGGGT-----TG-------G----------------------GGG----------------G-------GTGGG--------------------CATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|18 : GAGT----AAGAAAA-TATT-----C-----TA-------G----------------------GGG----------------GTTTTGGGG------------------------CATGCCCCCCACCCCTCCTGAAAAATTTTg
gi|27 : taatgaaaattttggtaaaataattgactgaaactgttgtagaaaacaccccagaacccaccacagacgatctaggaatcaCCCCCGAAACCCCCTAGATTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtaaggttcatttgagctttgacag
gi|26 : CCCCCGAAGCCTCCTAGAATATTTTCTCACTCTAAGTTTCATTTGAGCCTTGACAg
Alignments
lowQualScore : 22222 333333333 11111111111111 111111111111111 111111111 22222222 1111 2222222 2 111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 33 66666 111111111 33 2 333 33333333333333 33 1 2 0 444 444 2 2 33 2 0 1 777777777777777 999999 000000000 11111111 4444 7777 7777777 6666666 4 4 4 4 777 888 3 5555 3 99999 66666666666666666666666666666666666666666666666666666666666666666666666666666 5
lowQualScore : .. ..... ......... .. . ... .............. .. . . . ... ... . . .. . . . ............... ...... ......... ........ .... .... ....... ....... . . . . ... ... . .... . ..... ............................................................................. .
lowQualScore : 44 22222 333333333 22 1 999 88888888888888 22 3 4 6 111 444 5 5 77 3 6 4 999999999999999 666666 000000000 22222222 2222 1111 2222222 0000000 0 0 0 0 888 333 6 9999 1 33333 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
consensus : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACCAA-AATTTGA---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Reference ( family-1301 ) : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACCAA-A-TTTGA---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|1 : TACCTGTCAAGTCTCACGGTTTC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--TATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAT---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TATAT---TAGTTGTGTC-TGACCTAATG-TTAGCCACGGCGGAACCGGTGTTAGT-----------------ATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTT------TGC---------T
gi|1 : C---------TAGCA--------TCAAATC----A----CTGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-T-ACCAA-AATTTGA---AAA--------ATATAAA-------AAAACCTGTTGTAGAA-AACACCCCAAAAC-----------A---CA-CCCCAGAACACACCCCAGACGATCTAGGAATCAAATT----TTTT-----T-----CG-------GGGGGGGGGGGGTGGGGGGTGAGTGGGG----------------------GG----TATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGACCCTTGACAtgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccctagcatcaaatcactgcgttgctgtagctgaattactgtaaatttattataccaaaatttgaaaaatataaaaaaacctgttgtagaaaacaccccaaaacacaccccagaacacaccccagacgatctaggaatcaaatttttttcgggggggggggggtggggggtgagtggggggtatgcccccgaaaccccctagaatattttctcactctaaggttcatttgacccttgacagct
gi|10 : tacctgtcaagtctcacggtttcgccgtgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgttatttctcacgcatttcaattaaaacaaaattcacgaaattaaatactatggttttatgaataaatcggtaaaaacattggttcgtatattagttgtgtctgacctaatgttagccacggcggaaccggtgttagtataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtttgcttgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccGCAATGAAATCACAGTTTCATGTTG----------T--AATTTCTCTAACATTG-CTATTAAAACAAAATGCACAAAAA---TAAATAATCGGGCTTTATGAATAGTTCATATCCAATGAGTCGTTGCAAAGACATCTGATTTGACCTTTATGAATAGTTGTGTC-TGACCCAATGTTTAGTAAC--CAGAAATGTTGTAAGTATATAAgct
gi|10 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatAGCA--------CTACACC----ATGTGCAGCTTT---G---TT-------GTGGCTTAATTACTGTAAATTT-TAA-CAAACAA-A-Tattttttttttttttcataaaaacattgaactaagcactacaccatgtgcagctttgttgtggcttaattactgtaaattttaacaaacaaatccatacataactactga
gi|11 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatgcaatgaaatcacagtttcatgttgtaatttctctaacattgctattaaaacaaaatgcacaaaaataaataatcgggctttatgaatagttcatatccaatgagtcgttgcaaagacatctgatttgacctttatgaatagttgtgtctgacccaatgtttagtaaccagaaatgttgtaagtatataaattttttttttttttcataaaaacattgaactaACCTGTCAAGTCTTACGGTTTT--GCCGTG--AGTCTCAGGATTTTGGCAATAAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAGTACTACGGTTTTATGAATA--------------AATCA--GTTAAAACAT-TGGTTTG---TGTAT---AAGTTGTGTC-TGACCTTATG-TTAGCCAC--CGGAACC---------------------AACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGCTAGTGCTAGTAGCA--------TCACATC----A----CAACGTT---G---CT-------GTTGCTGAATTccatacataactactga
gi|12 : TACCTGTCAAGTCTCACGGTTCC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACACATTT-CAATTAAAACAAAATTCACGAAAA---TAATTACTATGGTTTTATGAATA--------------AATCG--G--------T-TG----G---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CAGAACCGGTGTTAGTATATAAT--------ACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGctaaagtagaaatactttattttactt
gi|13 : TTATTATC-ACC------TTGA---ACA---AATTCATATAA--TTACTGAAAATTC-TGGTAAAATAATTGAATACCACTGTTGTGTAAAT---CA-CACCAGACCGCATCACAGACAATCTGGtgctagtagctcgccttaaaaaaaga
gi|14 : aaaaggtgacaaaactaaaaatattttataatagcaaatttaatgctaaatgttctcagaaataccctgttattatcaccttgaacaaattcatataaaaactaaaaatataagtatggaggtatagctgtttataatagcaaatttaatgctaaatggtctcagaaataccctgATACATGTCAAGTTTTACGGT--C--ACC--G------------TTTTGACAATGAAATCACGGTCTCACGCTG-A--C-TAGGT--AACTTTTTATGCGTTT-CAATTAAAACAAAATTTACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---T----------TTGTGTC-TGACGTAATG-TTAGCCAC--CGGAACCGGTGTTAG-------TATACTAACAC--AATAATCGTTACTCGGTGTCAATATAAACATCATGGC----------------TCGTC------TGC---------TAG
gi|15 : c--AGTCTCACGATTTTGGCAATGAAATCA--GTCTCACGCTG-AGTA-T--GT--AATTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGtgctaatg
gi|16 : a-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCAGGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCAGTGTCAATGTCAACATCATGGC---------------GTCATC------TGC---------TAG
gi|17 : TTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TAAGCCAC--CGGAACCAG-GTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TG
gi|18 : TAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACCCACCACAGACGATCTAGGAATCAAAAAT---TTTT-----C-----AGGAGGGGTG------------------------GGG----------------------GG----CATG-CCCCAAAACCCCCTAGAATATTTTCTTACTCTAAGGTTCATTTGAGCTTTGACA
gi|19 : TT-TTGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CACCCCCAGAACACACCACAGACGATCTAGGAATCAATTT----TTTT-----T-----CG-------G------------------------GGGGGGGGGGGGGGAAGAT------GG----CATGTCCCCGAAACCCTCTAGAATAT----TCACTCTAAGGTTCATTTGAGCCTTGAg
gi|2 : TGTCAAGTCTCACAGTTTC--GCCGTG--AGTCTCACGATTTTGGTAATGAAATCACGGTCTCACGCTA------T--GT--A-----------ATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---CGTAT---TAGTTGTATC-TGAACTAATG-TTAGCCAC--CGGAACCGGTGTTAGTAT-------------ACATAATAATCTTTACCCGCTGTCAATGTAAACATTATaag
gi|2 : tca---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------TTAACTGAATTACTGTAAATTTATTA-C-ACCAA-AAGTTGA---AAAAA-AAATCATACCAATTGAATGTATATTT-TGGTAAAATAATTGACTGAAACTTTTGTAGAAAA---CA-CCC--AAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----CG----TG-------G------------------------GGG------------------------------TG--CCCGACACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatccttagcatcacatcacagcgttgctttaactgaattactgtaaatttattacaccaaaagttgaaaaaaaaatcataccaattgaatgtatattttggtaaaataattgactgaaacttttgtagaaaacacccaaacacaccacagacgatctaggaatcaaaaattttcgtgggggtgcccgacaccccctagaatattttctcactctaaggttcatttgagccttgaca
gi|20 : tcatgtcaagtctcacagtttcgccgtgagtctcacgattttggtaatgaaatcacggtctcacgctatgtaatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcgcgtattagttgtatctgaactaatgttagccaccggaaccggtgttagtatacataataatctttacccgctgtcaatgtaaacattatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatcctTTGACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|21 : GACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|22 : ATACTTACCAAGTCCCACGGTAAC--GC----------TCATTAT----ACAATTAAATCATGGTCTCACGCTG-A--C-T--ATAAAATTTCTCACGCAT-----ATTAAg
gi|23 : tATTTTG-CAATGAAATCAGAGTCTCGCACTA------T--GT--AATTTCTCAACCATTT-CAAGTAAAACAAAATGCATAAAAT---TAAATACc
gi|24 : tTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACAATGGTTTTATGAATA--------------AATCG--TT--AAATAT-TAGTT-G---TG
gi|25 : CAGTTTT--GCT--GTGAATCTCACGATTTTGGCAATGAAATCACGGTCTCA
gi|26 : tctatcatacCCCCCGAAGCCTCCTAGAATATTTTCTCACTCTAAGTTTCATTTGAGCCTTGACAa
gi|27 : CCCCCGAAACCCCCTAGATTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAg
gi|28 : TGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATCg
gi|29 : tTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATC
gi|3 : t--G--AGTCTCACGATTTTGGCAATGAACTCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--ATAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCATTACCCGGTG-TCA
gi|3 : TCATTACCCGGTGTCAATGTAAACCTCATGGC---------------GTCGTC------TGC---------TAGatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|3 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgC---------TAGCA--------TCACATC----A----CAGCATT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACCAA-AATTTGAGAAAAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATGGACTGAAACTGTTGTAGAAAA---CA-ACTCAGAACGTACCACAGACAATCTAGGAATCGAAAA----TTTTA----C-----TG-------G------------------------GGG----------------------GG-----------------------GGGATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|30 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgtcattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccCTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAAT
gi|31 : ATACCTGTCAAGTCTCACGGTTTC--GCCGTG--AGTCTCACG
gi|32 : --GTC--A--AGTCTCACGATTTTGACAATGAAATCACGG
gi|4 : ctATACCTGTCAAGTCTCATT-TTTCAAGTC--A--AGTTTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-AAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-CGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGCGTCAATGTAAACAT-ATGGC---------------TTCGTC------TCC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACCAA-T-TTTGA---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAATTAATTGACTGAAACTGTTGTAGAAAA---CA-CCCAAGAAAACACCACAGACGATCTAGGAATAAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCTGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|5 : --G--AGTCTCACGATTTTGGCAATGAAATCACAGT---------------T--GT--AATTTCTCACGCATTTTCAATTAAAACAAAATTCATGAAAAAAATAACTACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-TGATCTAATG-TTAGCCAC--CAGAACTGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCTGTGTCAATGTAAACATCATGGC---------------
gi|5 : tC---------TAGCA--------ACACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACCAA-AATTTGA---AAAA--AAATCATACAAATTTAATGAAAATTT-TGGTAAAATTATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAAAACACACCACAGACGATCTAGGAAT-AAATT----TTTT-----T-----TC-------G------------------------GGG----------------------GG----CAT------GAAACCCCCTGGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|6 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactggtgttagtatataatatactaacacataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgtttttttttgtaaaaaaataattcc--G--AGTCTTACGATTTTGGCAATGAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATAGTTTTATTATTA--------------AATCG--GTAAAAACAT-TGGT-----------------------C-TGACTTAATG-TTAGCCAC--CGGAACCGGTATTAGTAG-----------------------CGTTACTCG-TGTCAATGTAAACATCATGGC---------------GTCATC------TGC---------TAGTACTAGTAACTCGCCTCCAAAA----TAGCGTC---AAAACTCAAAGAAGTAGCCGAATTACTGTTAATTTATTA-C-ACCAA-AATTTGA---AAAAAAAAATCATACAAATTTAATGAAAATTT-TGGTGAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATC-AAAT----TTTT-----CAGGGGTG-------G------------------------GGGGGTGGGGGGGGGTGGGGGTGGGGG----TATGTCCCCGAAACCCCATAGAATATTTTCTCACTCTAAGGTTCATTTGAGCgc
gi|7 : gtACCAGTCAAGTCTCACGGTTTT--GCC--GCGAGTCTCACGATTTTAGCAATGAAATCTCGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACAAAA------------------------ATA--------------AAT----------ACTA-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAT--CAGAACCGGTTTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCTACTAAGTAAAAAAAATAATT------CCC---------TAACA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-C-ACTAA-AATTTGA---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGATTGAAACTGTTGCAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAATT----TTTT-----T-----T---------------------------------------------------------------------TCCCGAAATCCTCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|8 : CAAGTATCACGGTTTC--GCCTTG--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCACACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATTGTTTTATGAATA--------------AACTT--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTATTG-TTAGCCAC--CGGAACCCGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTCTGTTAGTGC---------TAGTAGC------TCGCCTCCAAAA----AAGCGTCAAAA---CTCAAAGAAGTAGCTGAATTAATGTAAATTTATTA-C-ACCAACA-TTTG----AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAAAAAAACCCA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----AATT-----------TG-------G------------------------GGG----------------------Ggc
gi|9 : cgATACCTGTCAAGTCTAACGGTTTT--GCC--GTGAGTTTCACGATCT-GGCAATAAAATCACGGTCTCACGATGCA--TAT--GT--AATTTCTCACGCATTT-CAATTAGAACAAAATTCACGAAAA---AATATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---TGTGT---TAGTTGTGTC-TGACCTAATG-TCAGCCAC--CGGAACTGGTGTTAGTAAATACTATACTAACACATAATAATTGTTACCCGGTGTCAATGCAAACATCATGGC---------------GTCGTC------TGC---------TAGTAGC------TCGCCTC----A----agg
gi|9 : cC---------TAGCA--------TCACATT----A----CAGCGaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattccctagcatcacattacagcg
Alignments
lowQualScore : 22222 333333333 11111111111111 111111111111111 111111111 22222222 1111 2222222 111111 111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 33 66666 111111111 33 2 333 33333333333333 33 1 2 0 444 444 2 2 33 2 0 1 777777777777777 999999 000000000 11111111 4444 7777 7777777 6666666 4 1 000000 222 3 5555 3 99999 66666666666666666666666666666666666666666666666666666666666666666666666666666 5
lowQualScore : .. ..... ......... .. . ... .............. .. . . . ... ... . . .. . . . ............... ...... ......... ........ .... .... ....... ....... . . ...... ... . .... . ..... ............................................................................. .
lowQualScore : 44 22222 333333333 22 1 999 88888888888888 22 3 4 6 111 444 5 5 77 3 6 4 999999999999999 666666 000000000 22222222 2222 1111 2222222 0000000 4 9 333333 222 6 9999 1 33333 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
consensus : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Reference ( family-1301 ) : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|1 : TACCTGTCAAGTCTCACGGTTTC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--TATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAT---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TATAT---TAGTTGTGTC-TGACCTAATG-TTAGCCACGGCGGAACCGGTGTTAGT-----------------ATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTT------TGC---------T
gi|1 : C---------TAGCA--------TCAAATC----A----CTGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-TACCAAAATTTG--A---AAA--------ATATAAA-------AAAACCTGTTGTAGAA-AACACCCCAAAAC-----------A---CA-CCCCAGAACACACCCCAGACGATCTAGGAATCAAATT----TTTT-----T-----CG-------GGGGGGGGGGGGTGGGGGGTGAGTGGGG----------------------GG----TATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGACCCTTGACAtgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccctagcatcaaatcactgcgttgctgtagctgaattactgtaaatttattataccaaaatttgaaaaatataaaaaaacctgttgtagaaaacaccccaaaacacaccccagaacacaccccagacgatctaggaatcaaatttttttcgggggggggggggtggggggtgagtggggggtatgcccccgaaaccccctagaatattttctcactctaaggttcatttgacccttgacagct
gi|10 : tacctgtcaagtctcacggtttcgccgtgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgttatttctcacgcatttcaattaaaacaaaattcacgaaattaaatactatggttttatgaataaatcggtaaaaacattggttcgtatattagttgtgtctgacctaatgttagccacggcggaaccggtgttagtataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtttgcttgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccGCAATGAAATCACAGTTTCATGTTG----------T--AATTTCTCTAACATTG-CTATTAAAACAAAATGCACAAAAA---TAAATAATCGGGCTTTATGAATAGTTCATATCCAATGAGTCGTTGCAAAGACATCTGATTTGACCTTTATGAATAGTTGTGTC-TGACCCAATGTTTAGTAAC--CAGAAATGTTGTAAGTATATAAgct
gi|10 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatAGCA--------CTACACC----ATGTGCAGCTTT---G---TT-------GTGGCTTAATTACTGTAAATTTattttttttttttttcataaaaacattgaactaagcactacaccatgtgcagctttgttgtggcttaattactgtaaattttaacaaacaaatccatacataactactga
gi|11 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatgcaatgaaatcacagtttcatgttgtaatttctctaacattgctattaaaacaaaatgcacaaaaataaataatcgggctttatgaatagttcatatccaatgagtcgttgcaaagacatctgatttgacctttatgaatagttgtgtctgacccaatgtttagtaaccagaaatgttgtaagtatataaattttttttttttttcataaaaacattgaactaACCTGTCAAGTCTTACGGTTTT--GCCGTG--AGTCTCAGGATTTTGGCAATAAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAGTACTACGGTTTTATGAATA--------------AATCA--GTTAAAACAT-TGGTTTG---TGTAT---AAGTTGTGTC-TGACCTTATG-TTAGCCAC--CGGAACC---------------------AACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGCTAGTGCTAGTAGCA--------TCACATC----A----CAACGTT---G---CT-------GTTGCTGAATTtaacaaacaaatccatacataactactga
gi|12 : TACCTGTCAAGTCTCACGGTTCC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACACATTT-CAATTAAAACAAAATTCACGAAAA---TAATTACTATGGTTTTATGAATA--------------AATCG--G--------T-TG----G---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CAGAACCGGTGTTAGTATATAAT--------ACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGctaaagtagaaatactttattttactt
gi|13 : TTATTATCACC-----TTG--A---ACA---AATTCATATAA--TTACTGAAAATTC-TGGTAAAATAATTGAATACCACTGTTGTGTAAAT---CA-CACCAGACCGCATCACAGACAATCTGGtgctagtagctcgccttaaaaaaaga
gi|14 : aaaaggtgacaaaactaaaaatattttataatagcaaatttaatgctaaatgttctcagaaataccctgttattatcaccttgaacaaattcatataaaaactaaaaatataagtatggaggtatagctgtttataatagcaaatttaatgctaaatggtctcagaaataccctgATACATGTCAAGTTTTACGGT--C--ACC--G------------TTTTGACAATGAAATCACGGTCTCACGCTG-A--C-TAGGT--AACTTTTTATGCGTTT-CAATTAAAACAAAATTTACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---T----------TTGTGTC-TGACGTAATG-TTAGCCAC--CGGAACCGGTGTTAG-------TATACTAACAC--AATAATCGTTACTCGGTGTCAATATAAACATCATGGC----------------TCGTC------TGC---------TAG
gi|15 : c--AGTCTCACGATTTTGGCAATGAAATCA--GTCTCACGCTG-AGTA-T--GT--AATTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGtgctaatg
gi|16 : a-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCAGGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCAGTGTCAATGTCAACATCATGGC---------------GTCATC------TGC---------TAG
gi|17 : TTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TAAGCCAC--CGGAACCAG-GTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TG
gi|18 : TAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACCCACCACAGACGATCTAGGAATCAAAAAT---TTTT-----C-----AGGAGGGGTG------------------------GGG----------------------GG----CATG-CCCCAAAACCCCCTAGAATATTTTCTTACTCTAAGGTTCATTTGAGCTTTGACA
gi|19 : TT-TTGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CACCCCCAGAACACACCACAGACGATCTAGGAATCAATTT----TTTT-----T-----CG-------G------------------------GGGGGGGGGGGGGGAAGAT------GG----CATGTCCCCGAAACCCTCTAGAATAT----TCACTCTAAGGTTCATTTGAGCCTTGAg
gi|2 : TGTCAAGTCTCACAGTTTC--GCCGTG--AGTCTCACGATTTTGGTAATGAAATCACGGTCTCACGCTA------T--GT--A-----------ATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---CGTAT---TAGTTGTATC-TGAACTAATG-TTAGCCAC--CGGAACCGGTGTTAGTAT-------------ACATAATAATCTTTACCCGCTGTCAATGTAAACATTATaag
gi|2 : tca---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------TTAACTGAATTACTGTAAATTTATTA-CACCAAAAGTTGAAA---AAA---AAATCATACCAATTGAATGTATATTT-TGGTAAAATAATTGACTGAAACTTTTGTAGAAAA---CA-CCC--AAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----CG----TG-------G------------------------GGG------------------------------TG--CCCGACACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatccttagcatcacatcacagcgttgctttaactgaattactgtaaatttattacaccaaaagttgaaaaaaaaatcataccaattgaatgtatattttggtaaaataattgactgaaacttttgtagaaaacacccaaacacaccacagacgatctaggaatcaaaaattttcgtgggggtgcccgacaccccctagaatattttctcactctaaggttcatttgagccttgaca
gi|20 : tcatgtcaagtctcacagtttcgccgtgagtctcacgattttggtaatgaaatcacggtctcacgctatgtaatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcgcgtattagttgtatctgaactaatgttagccaccggaaccggtgttagtatacataataatctttacccgctgtcaatgtaaacattatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatcctTTGACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|21 : GACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|22 : ATACTTACCAAGTCCCACGGTAAC--GC----------TCATTAT----ACAATTAAATCATGGTCTCACGCTG-A--C-T--ATAAAATTTCTCACGCAT-----ATTAAg
gi|23 : tATTTTG-CAATGAAATCAGAGTCTCGCACTA------T--GT--AATTTCTCAACCATTT-CAAGTAAAACAAAATGCATAAAAT---TAAATACc
gi|24 : tTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACAATGGTTTTATGAATA--------------AATCG--TT--AAATAT-TAGTT-G---TG
gi|25 : CAGTTTT--GCT--GTGAATCTCACGATTTTGGCAATGAAATCACGGTCTCA
gi|26 : tctatcatacCCCCCGAAGCCTCCTAGAATATTTTCTCACTCTAAGTTTCATTTGAGCCTTGACAa
gi|27 : CCCCCGAAACCCCCTAGATTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAg
gi|28 : TGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATCg
gi|29 : tTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATC
gi|3 : t--G--AGTCTCACGATTTTGGCAATGAACTCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--ATAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCATTACCCGGTG-TCA
gi|3 : TCATTACCCGGTGTCAATGTAAACCTCATGGC---------------GTCGTC------TGC---------TAGatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|3 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgC---------TAGCA--------TCACATC----A----CAGCATT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--AGAAAAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATGGACTGAAACTGTTGTAGAAAA---CA-ACTCAGAACGTACCACAGACAATCTAGGAATCGAAAA----TTTTA----C-----TG-------G------------------------GGG----------------------GG-----------------------GGGATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|30 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgtcattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccCTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAAT
gi|31 : ATACCTGTCAAGTCTCACGGTTTC--GCCGTG--AGTCTCACG
gi|32 : --GTC--A--AGTCTCACGATTTTGACAATGAAATCACGG
gi|4 : ctATACCTGTCAAGTCTCATT-TTTCAAGTC--A--AGTTTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-AAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-CGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGCGTCAATGTAAACAT-ATGGC---------------TTCGTC------TCC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACC-AATTTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAATTAATTGACTGAAACTGTTGTAGAAAA---CA-CCCAAGAAAACACCACAGACGATCTAGGAATAAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCTGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|5 : --G--AGTCTCACGATTTTGGCAATGAAATCACAGT---------------T--GT--AATTTCTCACGCATTTTCAATTAAAACAAAATTCATGAAAAAAATAACTACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-TGATCTAATG-TTAGCCAC--CAGAACTGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCTGTGTCAATGTAAACATCATGGC---------------
gi|5 : tC---------TAGCA--------ACACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAAA--AAATCATACAAATTTAATGAAAATTT-TGGTAAAATTATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAAAACACACCACAGACGATCTAGGAAT-AAATT----TTTT-----T-----TC-------G------------------------GGG----------------------GG----CAT------GAAACCCCCTGGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|6 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactggtgttagtatataatatactaacacataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgtttttttttgtaaaaaaataattcc--G--AGTCTTACGATTTTGGCAATGAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATAGTTTTATTATTA--------------AATCG--GTAAAAACAT-TGGT-----------------------C-TGACTTAATG-TTAGCCAC--CGGAACCGGTATTAGTAG-----------------------CGTTACTCG-TGTCAATGTAAACATCATGGC---------------GTCATC------TGC---------TAGTACTAGTAACTCGCCTCCAAAA----TAGCGTC---AAAACTCAAAGAAGTAGCCGAATTACTGTTAATTTATTA-CACCAAAATTTG--A---AAAAAAAAATCATACAAATTTAATGAAAATTT-TGGTGAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATC-AAAT----TTTT-----CAGGGGTG-------G------------------------GGGGGTGGGGGGGGGTGGGGGTGGGGG----TATGTCCCCGAAACCCCATAGAATATTTTCTCACTCTAAGGTTCATTTGAGCgc
gi|7 : gtACCAGTCAAGTCTCACGGTTTT--GCC--GCGAGTCTCACGATTTTAGCAATGAAATCTCGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACAAAA------------------------ATA--------------AAT----------ACTA-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAT--CAGAACCGGTTTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCTACTAAGTAAAAAAAATAATT------CCC---------TAACA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACTAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGATTGAAACTGTTGCAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAATT----TTTT-----T-----T---------------------------------------------------------------------TCCCGAAATCCTCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|8 : CAAGTATCACGGTTTC--GCCTTG--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCACACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATTGTTTTATGAATA--------------AACTT--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTATTG-TTAGCCAC--CGGAACCCGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTCTGTTAGTGC---------TAGTAGC------TCGCCTCCAAAA----AAGCGTCAAAA---CTCAAAGAAGTAGCTGAATTAATGTAAATTTATTA-CACCAACATTTG------AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAAAAAAACCCA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----AATT-----------TG-------G------------------------GGG----------------------Ggc
gi|9 : cgATACCTGTCAAGTCTAACGGTTTT--GCC--GTGAGTTTCACGATCT-GGCAATAAAATCACGGTCTCACGATGCA--TAT--GT--AATTTCTCACGCATTT-CAATTAGAACAAAATTCACGAAAA---AATATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---TGTGT---TAGTTGTGTC-TGACCTAATG-TCAGCCAC--CGGAACTGGTGTTAGTAAATACTATACTAACACATAATAATTGTTACCCGGTGTCAATGCAAACATCATGGC---------------GTCGTC------TGC---------TAGTAGC------TCGCCTC----A----agg
gi|9 : cC---------TAGCA--------TCACATT----A----CAGCGaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattccctagcatcacattacagcg
Alignments
lowQualScore : 22222 333333333 11111111111111 111111111111111 111111111 22222222 1111 2222222 111111 111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 33 66666 111111111 33 2 333 33333333333333 33 1 2 0 444 444 2 2 33 2 0 1 777777777777777 999999 000000000 11111111 4444 7777 7777777 6666666 4 1 000000 222 3 5555 3 99999 66666666666666666666666666666666666666666666666666666666666666666666666666666 5
lowQualScore : .. ..... ......... .. . ... .............. .. . . . ... ... . . .. . . . ............... ...... ......... ........ .... .... ....... ....... . . ...... ... . .... . ..... ............................................................................. .
lowQualScore : 44 22222 333333333 22 1 999 88888888888888 22 3 4 6 111 444 5 5 77 3 6 4 999999999999999 666666 000000000 22222222 2222 1111 2222222 0000000 4 9 333333 222 6 9999 1 33333 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
consensus : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Reference ( family-1301 ) : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|1 : TACCTGTCAAGTCTCACGGTTTC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--TATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAT---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TATAT---TAGTTGTGTC-TGACCTAATG-TTAGCCACGGCGGAACCGGTGTTAGT-----------------ATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTT------TGC---------T
gi|1 : C---------TAGCA--------TCAAATC----A----CTGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-TACCAAAATTTG--A---AAA--------ATATAAA-------AAAACCTGTTGTAGAA-AACACCCCAAAAC-----------A---CA-CCCCAGAACACACCCCAGACGATCTAGGAATCAAATT----TTTT-----T-----CG-------GGGGGGGGGGGGTGGGGGGTGAGTGGGG----------------------GG----TATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGACCCTTGACAtgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccctagcatcaaatcactgcgttgctgtagctgaattactgtaaatttattataccaaaatttgaaaaatataaaaaaacctgttgtagaaaacaccccaaaacacaccccagaacacaccccagacgatctaggaatcaaatttttttcgggggggggggggtggggggtgagtggggggtatgcccccgaaaccccctagaatattttctcactctaaggttcatttgacccttgacagct
gi|10 : tacctgtcaagtctcacggtttcgccgtgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgttatttctcacgcatttcaattaaaacaaaattcacgaaattaaatactatggttttatgaataaatcggtaaaaacattggttcgtatattagttgtgtctgacctaatgttagccacggcggaaccggtgttagtataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtttgcttgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccGCAATGAAATCACAGTTTCATGTTG----------T--AATTTCTCTAACATTG-CTATTAAAACAAAATGCACAAAAA---TAAATAATCGGGCTTTATGAATAGTTCATATCCAATGAGTCGTTGCAAAGACATCTGATTTGACCTTTATGAATAGTTGTGTC-TGACCCAATGTTTAGTAAC--CAGAAATGTTGTAAGTATATAAgct
gi|10 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatAGCA--------CTACACC----ATGTGCAGCTTT---G---TT-------GTGGCTTAATTACTGTAAATTTattttttttttttttcataaaaacattgaactaagcactacaccatgtgcagctttgttgtggcttaattactgtaaattttaacaaacaaatccatacataactactga
gi|11 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatgcaatgaaatcacagtttcatgttgtaatttctctaacattgctattaaaacaaaatgcacaaaaataaataatcgggctttatgaatagttcatatccaatgagtcgttgcaaagacatctgatttgacctttatgaatagttgtgtctgacccaatgtttagtaaccagaaatgttgtaagtatataaattttttttttttttcataaaaacattgaactaACCTGTCAAGTCTTACGGTTTT--GCCGTG--AGTCTCAGGATTTTGGCAATAAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAGTACTACGGTTTTATGAATA--------------AATCA--GTTAAAACAT-TGGTTTG---TGTAT---AAGTTGTGTC-TGACCTTATG-TTAGCCAC--CGGAACC---------------------AACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGCTAGTGCTAGTAGCA--------TCACATC----A----CAACGTT---G---CT-------GTTGCTGAATTtaacaaacaaatccatacataactactga
gi|12 : TACCTGTCAAGTCTCACGGTTCC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACACATTT-CAATTAAAACAAAATTCACGAAAA---TAATTACTATGGTTTTATGAATA--------------AATCG--G--------T-TG----G---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CAGAACCGGTGTTAGTATATAAT--------ACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGctaaagtagaaatactttattttactt
gi|13 : TTATTATCACC-----TTG--A---ACA---AATTCATATAA--TTACTGAAAATTC-TGGTAAAATAATTGAATACCACTGTTGTGTAAAT---CA-CACCAGACCGCATCACAGACAATCTGGtgctagtagctcgccttaaaaaaaga
gi|14 : aaaaggtgacaaaactaaaaatattttataatagcaaatttaatgctaaatgttctcagaaataccctgttattatcaccttgaacaaattcatataaaaactaaaaatataagtatggaggtatagctgtttataatagcaaatttaatgctaaatggtctcagaaataccctgATACATGTCAAGTTTTACGGT--C--ACC--G------------TTTTGACAATGAAATCACGGTCTCACGCTG-A--C-TAGGT--AACTTTTTATGCGTTT-CAATTAAAACAAAATTTACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---T----------TTGTGTC-TGACGTAATG-TTAGCCAC--CGGAACCGGTGTTAG-------TATACTAACAC--AATAATCGTTACTCGGTGTCAATATAAACATCATGGC----------------TCGTC------TGC---------TAG
gi|15 : c--AGTCTCACGATTTTGGCAATGAAATCA--GTCTCACGCTG-AGTA-T--GT--AATTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGtgctaatg
gi|16 : a-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCAGGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCAGTGTCAATGTCAACATCATGGC---------------GTCATC------TGC---------TAG
gi|17 : TTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TAAGCCAC--CGGAACCAG-GTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TG
gi|18 : TAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACCCACCACAGACGATCTAGGAATCAAAAAT---TTTT-----C-----AGGAGGGGTG------------------------GGG----------------------GG----CATG-CCCCAAAACCCCCTAGAATATTTTCTTACTCTAAGGTTCATTTGAGCTTTGACA
gi|19 : TT-TTGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CACCCCCAGAACACACCACAGACGATCTAGGAATCAATTT----TTTT-----T-----CG-------G------------------------GGGGGGGGGGGGGGAAGAT------GG----CATGTCCCCGAAACCCTCTAGAATAT----TCACTCTAAGGTTCATTTGAGCCTTGAg
gi|2 : TGTCAAGTCTCACAGTTTC--GCCGTG--AGTCTCACGATTTTGGTAATGAAATCACGGTCTCACGCTA------T--GT--A-----------ATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---CGTAT---TAGTTGTATC-TGAACTAATG-TTAGCCAC--CGGAACCGGTGTTAGTAT-------------ACATAATAATCTTTACCCGCTGTCAATGTAAACATTATaag
gi|2 : tca---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------TTAACTGAATTACTGTAAATTTATTA-CACCAAAAGTTGAAA---AAA---AAATCATACCAATTGAATGTATATTT-TGGTAAAATAATTGACTGAAACTTTTGTAGAAAA---CA-CCC--AAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----CG----TG-------G------------------------GGG------------------------------TG--CCCGACACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatccttagcatcacatcacagcgttgctttaactgaattactgtaaatttattacaccaaaagttgaaaaaaaaatcataccaattgaatgtatattttggtaaaataattgactgaaacttttgtagaaaacacccaaacacaccacagacgatctaggaatcaaaaattttcgtgggggtgcccgacaccccctagaatattttctcactctaaggttcatttgagccttgaca
gi|20 : tcatgtcaagtctcacagtttcgccgtgagtctcacgattttggtaatgaaatcacggtctcacgctatgtaatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcgcgtattagttgtatctgaactaatgttagccaccggaaccggtgttagtatacataataatctttacccgctgtcaatgtaaacattatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatcctTTGACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|21 : GACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|22 : ATACTTACCAAGTCCCACGGTAAC--GC----------TCATTAT----ACAATTAAATCATGGTCTCACGCTG-A--C-T--ATAAAATTTCTCACGCAT-----ATTAAg
gi|23 : tATTTTG-CAATGAAATCAGAGTCTCGCACTA------T--GT--AATTTCTCAACCATTT-CAAGTAAAACAAAATGCATAAAAT---TAAATACc
gi|24 : tTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACAATGGTTTTATGAATA--------------AATCG--TT--AAATAT-TAGTT-G---TG
gi|25 : CAGTTTT--GCT--GTGAATCTCACGATTTTGGCAATGAAATCACGGTCTCA
gi|26 : tctatcatacCCCCCGAAGCCTCCTAGAATATTTTCTCACTCTAAGTTTCATTTGAGCCTTGACAa
gi|27 : CCCCCGAAACCCCCTAGATTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAg
gi|28 : TGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATCg
gi|29 : tTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATC
gi|3 : t--G--AGTCTCACGATTTTGGCAATGAACTCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--ATAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCATTACCCGGTG-TCA
gi|3 : TCATTACCCGGTGTCAATGTAAACCTCATGGC---------------GTCGTC------TGC---------TAGatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|3 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgC---------TAGCA--------TCACATC----A----CAGCATT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--AGAAAAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATGGACTGAAACTGTTGTAGAAAA---CA-ACTCAGAACGTACCACAGACAATCTAGGAATCGAAAA----TTTTA----C-----TG-------G------------------------GGG----------------------GG-----------------------GGGATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|30 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgtcattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccCTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAAT
gi|31 : ATACCTGTCAAGTCTCACGGTTTC--GCCGTG--AGTCTCACG
gi|32 : --GTC--A--AGTCTCACGATTTTGACAATGAAATCACGG
gi|4 : ctATACCTGTCAAGTCTCATT-TTTCAAGTC--A--AGTTTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-AAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-CGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGCGTCAATGTAAACAT-ATGGC---------------TTCGTC------TCC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACC-AATTTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAATTAATTGACTGAAACTGTTGTAGAAAA---CA-CCCAAGAAAACACCACAGACGATCTAGGAATAAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCTGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|5 : --G--AGTCTCACGATTTTGGCAATGAAATCACAGT---------------T--GT--AATTTCTCACGCATTTTCAATTAAAACAAAATTCATGAAAAAAATAACTACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-TGATCTAATG-TTAGCCAC--CAGAACTGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCTGTGTCAATGTAAACATCATGGC---------------
gi|5 : tC---------TAGCA--------ACACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAAA--AAATCATACAAATTTAATGAAAATTT-TGGTAAAATTATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAAAACACACCACAGACGATCTAGGAAT-AAATT----TTTT-----T-----TC-------G------------------------GGG----------------------GG----CAT------GAAACCCCCTGGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|6 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactggtgttagtatataatatactaacacataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgtttttttttgtaaaaaaataattcc--G--AGTCTTACGATTTTGGCAATGAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATAGTTTTATTATTA--------------AATCG--GTAAAAACAT-TGGT-----------------------C-TGACTTAATG-TTAGCCAC--CGGAACCGGTATTAGTAG-----------------------CGTTACTCG-TGTCAATGTAAACATCATGGC---------------GTCATC------TGC---------TAGTACTAGTAACTCGCCTCCAAAA----TAGCGTC---AAAACTCAAAGAAGTAGCCGAATTACTGTTAATTTATTA-CACCAAAATTTG--A---AAAAAAAAATCATACAAATTTAATGAAAATTT-TGGTGAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATC-AAAT----TTTT-----CAGGGGTG-------G------------------------GGGGGTGGGGGGGGGTGGGGGTGGGGG----TATGTCCCCGAAACCCCATAGAATATTTTCTCACTCTAAGGTTCATTTGAGCgc
gi|7 : gtACCAGTCAAGTCTCACGGTTTT--GCC--GCGAGTCTCACGATTTTAGCAATGAAATCTCGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACAAAA------------------------ATA--------------AAT----------ACTA-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAT--CAGAACCGGTTTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCTACTAAGTAAAAAAAATAATT------CCC---------TAACA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACTAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGATTGAAACTGTTGCAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAATT----TTTT-----T-----T---------------------------------------------------------------------TCCCGAAATCCTCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|8 : CAAGTATCACGGTTTC--GCCTTG--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCACACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATTGTTTTATGAATA--------------AACTT--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTATTG-TTAGCCAC--CGGAACCCGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTCTGTTAGTGC---------TAGTAGC------TCGCCTCCAAAA----AAGCGTCAAAA---CTCAAAGAAGTAGCTGAATTAATGTAAATTTATTA-CACCAACATTTG------AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAAAAAAACCCA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----AATT-----------TG-------G------------------------GGG----------------------Ggc
gi|9 : cgATACCTGTCAAGTCTAACGGTTTT--GCC--GTGAGTTTCACGATCT-GGCAATAAAATCACGGTCTCACGATGCA--TAT--GT--AATTTCTCACGCATTT-CAATTAGAACAAAATTCACGAAAA---AATATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---TGTGT---TAGTTGTGTC-TGACCTAATG-TCAGCCAC--CGGAACTGGTGTTAGTAAATACTATACTAACACATAATAATTGTTACCCGGTGTCAATGCAAACATCATGGC---------------GTCGTC------TGC---------TAGTAGC------TCGCCTC----A----agg
gi|9 : cC---------TAGCA--------TCACATT----A----CAGCGaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattccctagcatcacattacagcg
blockSeqs : AA GTG ACTAT AA T AAA GTTCATATCCAATG TT A C ACC GAA A T . A A TACTAAGTAAAAAAA TGTTAG TAGTGCTAG CTAGTAAC CAAA TGTG AAAA CAAAGAA T A AGAA AAA . AACC C AAAAA CAGGGGTGGGGGGGTGGGGGGGGGTGGGGGTGGGGGT T
blockSeqs : . GTG ACTAG . . . . . T . . . . . . A A . . . GC CAAA . AAAA CAAAGAA . A AAA A . T . AAAAA TCGGGGGGGGGGGGGGGGAAGATGGC C
blockSeqs : . GTG AGTAT . . . . . T . . . . . . A A . . . GC . . G . . A A . . A . AT GGGGGTTGGGGGGGTGGGC C
blockSeqs : . GTG ACTAT . . . . . A . . . . . . A A . . . . . . G . . A A . . A . T GGGGGTTGGGGGGGTGGGC C
blockSeqs : . GTG ACTAT . . . . . A . . . . . . A A . . . . . . G . . A A . . A . A CAGGAGGGGTGGGGGGC C
blockSeqs : . GCG CATAT . . . . . A . . . . . . A A . . . . . . G . . A A . . A . A ACTGGGGGGG C
blockSeqs : . TTG ACT . . . . . A . . . . . . A A . . . . . . G . . . A . . A . A CTGGGGGGGC T
blockSeqs : . GTG ACT . . . . . A . . . . . . A A . . . . . . G . . . . . . A . T TTCGGGGGGC .
blockSeqs : . G T . . . . . A . . . . . . A A . . . . . . G . . A . T CGTGGGGG .
blockSeqs : . G T . . . . . A . . . . . . A . . . . . . . . A . T TT .
blockSeqs : . A T . . . . . A . . . . . . . . . . . . . . . . A .
blockSeqs : . A T . . . . . A . . . . . . . . . . . . .
blockSeqs : . G T . . . . . T . . . . . . . . . .
blockSeqs : . G T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : ACT****** **
originalCons : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
finalCons : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTGACT------GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Alignments
lowQualScore : 22222 333333333 11111111111111 111111111111111 111111111 22222222 1111 2222222 111111 111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 33 66666 111111111 33 2 333 33333333333333 33 1 2 0 444 444 2 2 33 2 0 1 777777777777777 999999 000000000 11111111 4444 7777 7777777 6666666 4 1 000000 222 3 5555 3 99999 66666666666666666666666666666666666666666666666666666666666666666666666666666 5
lowQualScore : .. ..... ......... .. . ... .............. .. . . . ... ... . . .. . . . ............... ...... ......... ........ .... .... ....... ....... . . ...... ... . .... . ..... ............................................................................. .
lowQualScore : 44 22222 333333333 22 1 999 88888888888888 22 3 4 6 111 444 5 5 77 3 6 4 999999999999999 666666 000000000 22222222 2222 1111 2222222 0000000 4 9 333333 222 6 9999 1 33333 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
consensus : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
Reference ( family-1301 ) : ATACCTGTCAAGTCTCACGGTTTC--GCC--G--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|1 : TACCTGTCAAGTCTCACGGTTTC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--TATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAT---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---TATAT---TAGTTGTGTC-TGACCTAATG-TTAGCCACGGCGGAACCGGTGTTAGT-----------------ATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTT------TGC---------T
gi|1 : C---------TAGCA--------TCAAATC----A----CTGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-TACCAAAATTTG--A---AAA--------ATATAAA-------AAAACCTGTTGTAGAA-AACACCCCAAAAC-----------A---CA-CCCCAGAACACACCCCAGACGATCTAGGAATCAAATT----TTTT-----T-----CG-------GGGGGGGGGGGGTGGGGGGTGAGTGGGG----------------------GG----TATGCCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGACCCTTGACAtgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccctagcatcaaatcactgcgttgctgtagctgaattactgtaaatttattataccaaaatttgaaaaatataaaaaaacctgttgtagaaaacaccccaaaacacaccccagaacacaccccagacgatctaggaatcaaatttttttcgggggggggggggtggggggtgagtggggggtatgcccccgaaaccccctagaatattttctcactctaaggttcatttgacccttgacagct
gi|10 : tacctgtcaagtctcacggtttcgccgtgagtctcacgattttggcaatgaaatcacggtctcacgctgactatgttatttctcacgcatttcaattaaaacaaaattcacgaaattaaatactatggttttatgaataaatcggtaaaaacattggttcgtatattagttgtgtctgacctaatgttagccacggcggaaccggtgttagtataataatcgttacccggtgtcaatgtaaacatcatggcgtcgtttgcttgtgctagtagcagtagaactttcttggaggtatcgttaagctattctgactactaaatagggtgtgtgttttttttgtaaaaatataattccGCAATGAAATCACAGTTTCATGTTG----------T--AATTTCTCTAACATTG-CTATTAAAACAAAATGCACAAAAA---TAAATAATCGGGCTTTATGAATAGTTCATATCCAATGAGTCGTTGCAAAGACATCTGATTTGACCTTTATGAATAGTTGTGTC-TGACCCAATGTTTAGTAAC--CAGAAATGTTGTAAGTATATAAgct
gi|10 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatAGCA--------CTACACC----ATGTGCAGCTTT---G---TT-------GTGGCTTAATTACTGTAAATTTattttttttttttttcataaaaacattgaactaagcactacaccatgtgcagctttgttgtggcttaattactgtaaattttaacaaacaaatccatacataactactga
gi|11 : cttgaactgtgaaatgtaaacgtttgtcaaaccagtcgagatgcaatgaaatcacagtttcatgttgtaatttctctaacattgctattaaaacaaaatgcacaaaaataaataatcgggctttatgaatagttcatatccaatgagtcgttgcaaagacatctgatttgacctttatgaatagttgtgtctgacccaatgtttagtaaccagaaatgttgtaagtatataaattttttttttttttcataaaaacattgaactaACCTGTCAAGTCTTACGGTTTT--GCCGTG--AGTCTCAGGATTTTGGCAATAAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAGTACTACGGTTTTATGAATA--------------AATCA--GTTAAAACAT-TGGTTTG---TGTAT---AAGTTGTGTC-TGACCTTATG-TTAGCCAC--CGGAACC---------------------AACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGCTAGTGCTAGTAGCA--------TCACATC----A----CAACGTT---G---CT-------GTTGCTGAATTtaacaaacaaatccatacataactactga
gi|12 : TACCTGTCAAGTCTCACGGTTCC--GCC--GTGAGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACACATTT-CAATTAAAACAAAATTCACGAAAA---TAATTACTATGGTTTTATGAATA--------------AATCG--G--------T-TG----G---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CAGAACCGGTGTTAGTATATAAT--------ACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TGC---------TAGctaaagtagaaatactttattttactt
gi|13 : TTATTATCACC-----TTG--A---ACA---AATTCATATAA--TTACTGAAAATTC-TGGTAAAATAATTGAATACCACTGTTGTGTAAAT---CA-CACCAGACCGCATCACAGACAATCTGGtgctagtagctcgccttaaaaaaaga
gi|14 : aaaaggtgacaaaactaaaaatattttataatagcaaatttaatgctaaatgttctcagaaataccctgttattatcaccttgaacaaattcatataaaaactaaaaatataagtatggaggtatagctgtttataatagcaaatttaatgctaaatggtctcagaaataccctgATACATGTCAAGTTTTACGGT--C--ACC--G------------TTTTGACAATGAAATCACGGTCTCACGCTG-A--C-TAGGT--AACTTTTTATGCGTTT-CAATTAAAACAAAATTTACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---T----------TTGTGTC-TGACGTAATG-TTAGCCAC--CGGAACCGGTGTTAG-------TATACTAACAC--AATAATCGTTACTCGGTGTCAATATAAACATCATGGC----------------TCGTC------TGC---------TAG
gi|15 : c--AGTCTCACGATTTTGGCAATGAAATCA--GTCTCACGCTG-AGTA-T--GT--AATTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGtgctaatg
gi|16 : a-T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCAGGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAC--CGGAACCGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCAGTGTCAATGTCAACATCATGGC---------------GTCATC------TGC---------TAG
gi|17 : TTTCTCACGCATTT-CAATTAAATCAAAATCAACAAAAA---TAAATACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTCG---TGTAT---TTGTTGTGTC-TGACCTAATG-TAAGCCAC--CGGAACCAG-GTTAGTATATAATATACTAACACATAATAATCGTTACTGGGTGTCAATGTAAACATCATGGC---------------GTCGTC------TG
gi|18 : TAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACCCACCACAGACGATCTAGGAATCAAAAAT---TTTT-----C-----AGGAGGGGTG------------------------GGG----------------------GG----CATG-CCCCAAAACCCCCTAGAATATTTTCTTACTCTAAGGTTCATTTGAGCTTTGACA
gi|19 : TT-TTGTAAAATAATTGACTGAAACTGTTGTAGAAAA---CACCCCCAGAACACACCACAGACGATCTAGGAATCAATTT----TTTT-----T-----CG-------G------------------------GGGGGGGGGGGGGGAAGAT------GG----CATGTCCCCGAAACCCTCTAGAATAT----TCACTCTAAGGTTCATTTGAGCCTTGAg
gi|2 : TGTCAAGTCTCACAGTTTC--GCCGTG--AGTCTCACGATTTTGGTAATGAAATCACGGTCTCACGCTA------T--GT--A-----------ATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTCG---CGTAT---TAGTTGTATC-TGAACTAATG-TTAGCCAC--CGGAACCGGTGTTAGTAT-------------ACATAATAATCTTTACCCGCTGTCAATGTAAACATTATaag
gi|2 : tca---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------TTAACTGAATTACTGTAAATTTATTA-CACCAAAAGTTGAAA---AAA---AAATCATACCAATTGAATGTATATTT-TGGTAAAATAATTGACTGAAACTTTTGTAGAAAA---CA-CCC--AAACACACCACAGACGATCTAGGAATCAAAAA----TTTT-----CG----TG-------G------------------------GGG------------------------------TG--CCCGACACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatccttagcatcacatcacagcgttgctttaactgaattactgtaaatttattacaccaaaagttgaaaaaaaaatcataccaattgaatgtatattttggtaaaataattgactgaaacttttgtagaaaacacccaaacacaccacagacgatctaggaatcaaaaattttcgtgggggtgcccgacaccccctagaatattttctcactctaaggttcatttgagccttgaca
gi|20 : tcatgtcaagtctcacagtttcgccgtgagtctcacgattttggtaatgaaatcacggtctcacgctatgtaatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcgcgtattagttgtatctgaactaatgttagccaccggaaccggtgttagtatacataataatctttacccgctgtcaatgtaaacattatcaactatcttggaggtatcgttaagcttttccgactacttaatagggtgtgtgttttttgtttttttaaaaatcctTTGACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|21 : GACTGAAACTGTTGTAGAAA----CA-CCCCAGAACACACCACAGATGATGTAGGAATCAAAAAAAAATTTTGGGGGT-----TG-------G------------------------GGG----------------------GGTGGGCATGCTCCCAAAACCCCCTAGAACATTTCCGCACTCTTAGGTTCATTTGAGCCTTGACA
gi|22 : ATACTTACCAAGTCCCACGGTAAC--GC----------TCATTAT----ACAATTAAATCATGGTCTCACGCTG-A--C-T--ATAAAATTTCTCACGCAT-----ATTAAg
gi|23 : tATTTTG-CAATGAAATCAGAGTCTCGCACTA------T--GT--AATTTCTCAACCATTT-CAAGTAAAACAAAATGCATAAAAT---TAAATACc
gi|24 : tTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACAATGGTTTTATGAATA--------------AATCG--TT--AAATAT-TAGTT-G---TG
gi|25 : CAGTTTT--GCT--GTGAATCTCACGATTTTGGCAATGAAATCACGGTCTCA
gi|26 : tctatcatacCCCCCGAAGCCTCCTAGAATATTTTCTCACTCTAAGTTTCATTTGAGCCTTGACAa
gi|27 : CCCCCGAAACCCCCTAGATTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAg
gi|28 : TGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATCg
gi|29 : tTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAATC
gi|3 : t--G--AGTCTCACGATTTTGGCAATGAACTCACGGTCTCACGCTG-A--C-TATGT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--ATAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTCATTACCCGGTG-TCA
gi|3 : TCATTACCCGGTGTCAATGTAAACCTCATGGC---------------GTCGTC------TGC---------TAGatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|3 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgC---------TAGCA--------TCACATC----A----CAGCATT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--AGAAAAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATGGACTGAAACTGTTGTAGAAAA---CA-ACTCAGAACGTACCACAGACAATCTAGGAATCGAAAA----TTTTA----C-----TG-------G------------------------GGG----------------------GG-----------------------GGGATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccctagcatcacatcacagcattgctgtagctgaattactgtaaatttattacaccaaaatttgagaaaaaaaatcatacaaatttaatgaaaattttggtaaaataatggactgaaactgttgtagaaaacaactcagaacgtaccacagacaatctaggaatcgaaaattttactggggggggggatattttctcactctaaggttcatttgagccttgaca
gi|30 : gagtctcacgattttggcaatgaactcacggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcgataaaaacattggtttgtgtattagttgtgtcattacccggtgtcaatgtaaacctcatggcgtcgtctgctagtgctagtagctcgcctccaaaaaagcgtcaaaactcaaagaaatatggtggtgcggccgtatataaaagcaaatatgatgctaaatggtctcagaaatatcccgtttgtaaacgaataattccCTGTCAAGTATCACGGTTTC--GCC------GTCTCTAGATTTTGGCAATGAAAT
gi|31 : ATACCTGTCAAGTCTCACGGTTTC--GCCGTG--AGTCTCACG
gi|32 : --GTC--A--AGTCTCACGATTTTGACAATGAAATCACGG
gi|4 : ctATACCTGTCAAGTCTCATT-TTTCAAGTC--A--AGTTTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-T--GT--AATTTCTCACGCATTT-AAATTAAAACAAAATTCACGAAAA---TAAATACTATGGTTTTATGAATA--------------AATCG--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-CGACCTAATG-TTAGCCAC--CGGAACCAGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGCGTCAATGTAAACAT-ATGGC---------------TTCGTC------TCC---------TAGCA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACC-AATTTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAATTAATTGACTGAAACTGTTGTAGAAAA---CA-CCCAAGAAAACACCACAGACGATCTAGGAATAAAAAA----TTTT-----C-----TG-------G------------------------GGG----------------------GG----CATGCCCCTGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|5 : --G--AGTCTCACGATTTTGGCAATGAAATCACAGT---------------T--GT--AATTTCTCACGCATTTTCAATTAAAACAAAATTCATGAAAAAAATAACTACTATGGTTTTATGAATA--------------AATCA--GTAAAAACAT-TGGTTTG---TGTAT---TAGTTGTGTC-TGATCTAATG-TTAGCCAC--CAGAACTGGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCTGTGTCAATGTAAACATCATGGC---------------
gi|5 : tC---------TAGCA--------ACACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACCAAAATTTG--A---AAAA--AAATCATACAAATTTAATGAAAATTT-TGGTAAAATTATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAAAACACACCACAGACGATCTAGGAAT-AAATT----TTTT-----T-----TC-------G------------------------GGG----------------------GG----CAT------GAAACCCCCTGGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAtactaaataggctgtgtttttttttgtaaaaaaataattccctagcaacacatcacagcgttgctgtagctgaattactgtaaatttattacaccaaaatttgaaaaaaaatcatacaaatttaatgaaaattttggtaaaattattgactgaaactgttgtagaaaacaccccaaaacacaccacagacgatctaggaataaattttttttcggggggcatgaaaccccctggaatattttctcactctaaggttcatttgagccttgacagc
gi|6 : tgagtctcacgattttggcaatgaaatcacagttgtaatttctcacgcattttcaattaaaacaaaattcatgaaaaaaataactactatggttttatgaataaatcagtaaaaacattggtttgtgtattagttgtgtctgatctaatgttagccaccagaactggtgttagtatataatatactaacacataataatcgttaccctgtgtcaatgtaaacatcatggctactaaataggctgtgtttttttttgtaaaaaaataattcc--G--AGTCTTACGATTTTGGCAATGAAATCACGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATAGTTTTATTATTA--------------AATCG--GTAAAAACAT-TGGT-----------------------C-TGACTTAATG-TTAGCCAC--CGGAACCGGTATTAGTAG-----------------------CGTTACTCG-TGTCAATGTAAACATCATGGC---------------GTCATC------TGC---------TAGTACTAGTAACTCGCCTCCAAAA----TAGCGTC---AAAACTCAAAGAAGTAGCCGAATTACTGTTAATTTATTA-CACCAAAATTTG--A---AAAAAAAAATCATACAAATTTAATGAAAATTT-TGGTGAAATAATTGACTGAAACTGTTGTAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATC-AAAT----TTTT-----CAGGGGTG-------G------------------------GGGGGTGGGGGGGGGTGGGGGTGGGGG----TATGTCCCCGAAACCCCATAGAATATTTTCTCACTCTAAGGTTCATTTGAGCgc
gi|7 : gtACCAGTCAAGTCTCACGGTTTT--GCC--GCGAGTCTCACGATTTTAGCAATGAAATCTCGGTCTCACGCTA------T--GT--AATTTCTCACGCATTT-CAATTAAAACAAAATTCACAAAA------------------------ATA--------------AAT----------ACTA-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTAATG-TTAGCCAT--CAGAACCGGTTTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGCTACTAAGTAAAAAAAATAATT------CCC---------TAACA--------TCACATC----A----CAGCGTT---G---CT-------GTAGCTGAATTACTGTAAATTTATTA-CACTAAAATTTG--A---AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGATTGAAACTGTTGCAGAAAA---CA-CCCCAGAACACACCACAGACGATCTAGGAATCAAATT----TTTT-----T-----T---------------------------------------------------------------------TCCCGAAATCCTCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACA
gi|8 : CAAGTATCACGGTTTC--GCCTTG--AGTCTCACGATTTTGGCAATGAAATCACGGTCTCACGCTG-A--C-TATGT--AATTTCACACGCATTT-CAATTAAAACAAAATTCACGAAAA---TAAATACTATTGTTTTATGAATA--------------AACTT--GTAAAAACAT-TGGTTCG---TGTAT---TAGTTGTGTC-TGACCTATTG-TTAGCCAC--CGGAACCCGTGTTAGTATATAATATACTAACACATAATAATCGTTACCCGGTGTCAATGTAAACATCATGGC---------------GTCGTCTGTTAGTGC---------TAGTAGC------TCGCCTCCAAAA----AAGCGTCAAAA---CTCAAAGAAGTAGCTGAATTAATGTAAATTTATTA-CACCAACATTTG------AAA---AAATCATACAAATTTAATGAAAATTT-TGGTAAAATAATTGACTGAAACTGTTGTAAAAAAACCCA-CCCCAGAACACACCACAGACGATCTAGGAATCAAAAA----AATT-----------TG-------G------------------------GGG----------------------Ggc
gi|9 : cgATACCTGTCAAGTCTAACGGTTTT--GCC--GTGAGTTTCACGATCT-GGCAATAAAATCACGGTCTCACGATGCA--TAT--GT--AATTTCTCACGCATTT-CAATTAGAACAAAATTCACGAAAA---AATATACTATGGTTTTATGAATA--------------AATCG--GTTAAAACAT-TGGTTCG---TGTGT---TAGTTGTGTC-TGACCTAATG-TCAGCCAC--CGGAACTGGTGTTAGTAAATACTATACTAACACATAATAATTGTTACCCGGTGTCAATGCAAACATCATGGC---------------GTCGTC------TGC---------TAGTAGC------TCGCCTC----A----agg
gi|9 : cC---------TAGCA--------TCACATT----A----CAGCGaaaaatgcgtcaaaactatttaaagcaatagaactatcttggaggtatcgttaagctgttctgactactaaatagcgtatgtttttttttaagaaaaaaaaattccctagcatcacattacagcg