lowQualScore : 111 11111 11111111 444444444444444444 1111 11111111 444444 1 111 1 3 1111111111111111111 111111111111111111 555555555555555555 1 222 1111111
lowQualScore : 5 2 2 1 5 5 2 7 333 33333 55555555 555555 66 22 55 000000000000000000 44444 888888 1 4444 9 333 1111 44444444 777777 33 33 3 2 5 6 7 2 2 77 8 1 777 2 55555 99 6 77 2 333 2 2 555555 22 2 77777777 2 2 4 5 3 5 33 3 33 2 55555 333 2 3333333333333333333 444444444444444444 2 555555555555555555 5 2 33 4444 111 2 3333333 2 777777 0 5555 555 4 1
lowQualScore : . . . . . . . . ... ..... ........ ...... .. .. .. .................. ..... ...... . .... . ... .... ........ ...... .. .. . . . . . . . .. . . ... . ..... .. . .. . ... . . ...... .. . ........ . . . . . . .. . .. . ..... ... . ................... .................. . .................. . . .. .... ... . ....... . ...... . .... ... . .
lowQualScore : 8 5 5 2 7 6 0 5 666 11111 22222222 555555 44 66 00 000000000000000000 88888 888888 9 2222 5 555 2222 77777777 555555 11 11 4 2 1 0 0 9 4 66 3 2 111 1 33333 44 2 22 1 777 7 1 888888 99 1 66666666 1 6 9 3 6 6 11 3 11 2 66666 999 2 1111111111111111111 999999999999999999 2 555555555555555555 4 6 11 7777 666 9 8888888 7 555555 3 7777 444 4 2
consensus : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGG-TANCACG--TAAGAT---TTAA---A----AA------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAAT---G----AC------C-CTCTG------TTTT--CA--TGNGT-AATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAAN-TCACTTTTT-T---ATTTTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAANCTCTGCTGATANTTACGT--ACA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AC-----------TT-AAA-TATACACAAAACGT--AC----ATA-NAGAATAANT-----TA-TT---T--ATTTCGCA---AATAAA---TTTC-TGCTATAGGGAAATTTACCAGATGACGTAG
Reference ( gi|5 ) : AGCGAGCGAATACGAGCGAATGCACGGC-GAA-GCCGTGCATTCGCAAGTATGCGAGCTCTTATGG-TATCACC--TAAGAT---TTAA---A----AA------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAAT---G----AC------C-CTCTGATT---TTTT--CA--TGCGT-AATCTGAAACTCTCGGCTACGTAGGTTGTTTCTAATTTGATTGCATAAAATATAAGAATTCTA-TA-CGA---AAATCCGGGTTTACAAAA-TCACTTTTT-T---ATCTTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAATCTCTCCTTATAATTACGT--A-A--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AC-----------TT-AAT-TATACACATAACGT--AC----AT--TAGAATAAAT-----TA-TT---T--ATTTCACA---AATAAA---TTTC-TGCTATAGGGAAATTTACCAGATGACGTAG
gi|9 : GCGAGCGAATACGAGCAAATGCGCGGC-GA-------------------AT-----CTCTTATAG-TATCACG--TATGAT---TAAA---A----AA------A--A--AAGATATA----T--T--------TG-----CAAA------C-ATATACTA----ACGATTAAAACCGGAAAT---G----AC------C-CTCTG------TTTT--CA--AGCGT-AATTTGGAACACTCGGCTATGTAGGTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCGAGTTTACAAAG-CCACTTTTT-T---ATCTTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAATCTCTCTTTATATTTACGT--ACA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AC-----------TA-AAA-TATACACAAAATGT--AC----AT--TATAATAATT-----TA-TT---T--ATTTCACA---AATAAA---TTTC-TGCTAAAGGGAAATTTACCAGATGA
gi|23 : CGAATACTCGCGTATGCACAGC-TTC-GCTGCGCATTCGCTCGTAT
gi|7 : aGAATACGAGCGAATGAACGGC-GAA-GCCGTGCATTCGCGAGTATGAGAGCTCTTATGG-TATCACG--TAAGAT---TAAAG--A----AA------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAAT---G----AC------C-CTCTTCTG---TTTT--CA--TGCGT-AGTTTGGAATATTTGGCTATGTACGTTGTTTTTAATTTGATTACATAAAATATTGAAATTCTA-TA-CGA---AAATCCGGGTTTACAAAA-TAACTTTTT-T---ATCCTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAATCTCTCCTTATAATTACGT--ACA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AC-----------TA-AAA-TATACACAAAACGT--AC----AT--TATAATAATT-----TA-TT---T--ATTTCACA---AATAAA---TTTC-TGCTATAGGGAAATTTACagctcttatggtatcacgtaagattcaagaaaaaaaagatatatttacaaacatatactaacgttaaaaaatggaaatgaccctctactgttttcatgcgtaatttggaacactcggctatgtaggttgtttt
gi|1 : GAATATGGGTGAATGT-CGGC-GAA-GCCGAGCATCCGCAAGTATGCAAGCTCATATGG-TAACACG--TAGGAT---ATAA---A----AA------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----ACGTTGAAAAACAGAAAT---GACA-AC------T-CTCTG------TTTC--CA--TGGGT-GATTTGGAACACTCAGATATATAGGCTGCTATTAGTTTGATTACATAAAATGTAAGAATTCTA--A-C-A---AAATCTTGTTTTATGAAT-TCACTTTTT-T---ATTTTGA-ATCAT------GAATAA--TTG-T--------TT-TGAAAGCTCTGCTGATATTCATGT--ATA--AA-A-----TATAATA---TACT-T--------------T----AAA-------A----------C-ACAAAATACAACTTT-AAA-TGTGAACAAAATGT--ACCCAAAT-----AATAAA------TA-TT---TTCGTGCCGCA---GATAAA---T
gi|23 : AATACGAGCGAATGCGCAGC-GAA-GCTGTGCATACGCGAGTATTCGAGCTCTTATGG-TATCACG--TAAGAT---TCAAGAAA----AA------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTAAAAAATGGAAAT---G----AC------C-CTCTACTG---TTTT--CA--TGCGT-AATTTGGAACACTCGGCTATGTAGGTTGTTTaagaagaataataaaaaagaatctcagcctcttggaaatgtcttggtttttagtatttaaaacccagcggttttattattcaa
gi|7 : ATACTCGCGAATGCACGGC-TTC-GCCGTTCATTCGCTCGTATt
gi|6 : gaATACTCGAGAATGCACGGC-TTT-GCCGTGCATTCGCgagagctcttatggtatcacgtaagattaaagaaaaaagatatatttacaaacatatactaacgttgaaaaccggaaatgaccctcttctgttttcatgcgtagtttggaatatttggctatgtacgttgtttttaatttgattacataaaatattgaaattctatacgaaaatccgggtttacaaaataacttttttatcctgaatcatgaatagttatttcaaatctctccttataattacgtacaaaatataatatatttaaaaacactaaaatatacacaaaacgtacattataataatttatttatttcacaaataaatttctgctatagggaaatttac
gi|2 : gaATACGAACGAATGTGTGGC-AAA-GCCATGCATTCGTGAGTATGCAAGCTCATATGG-TAACATG--TAGGAT---ATAA---A----AACAAAACA--A--A-AATAAA----TGATA-------TA-----CAGA------T-ATATACTA----AAATTGAAAATCGGAAAT---G----AC------AACTC--ACTG--TTTT--CA--TGGGT-GATTTGGAACACTCGTATATATAGGCTGCTATTAGTTTGATTACATAAAATATAAAAATTCTG--A-C-A---AAATCTTGTTTT-TAAAATTCATTTTTT-T---ATTTTGA-ATCAT------CAATAG--TTA-T--------TT-TGAAAGCTCTGCTGATATTCATGT--ATA--AA-A-----TATATTA---TACT-A--------------A----AAAAAACAATA----------C-ACCACT-------TT-AAA-TGTAAACAAAATGT--AC----ACA-AAGAATAAA------TA-TT---T--gcaagcttttatggtatcacgtaagattaaagaaaaaagatatatttacaaacatatattaacgttgaaaaccggaaatgaccctctgtttttttttcatgcgtaatttagaccactcggctacgtaggttgtttttaattttattacataaaatacaggaattctgaacaaaaatccgagtttaaaaagccactttttatcttaaatcatgaatagtcatttcaaatctctccttataattacgtacaacataaaacataattaaaaacactaaaatatacacaaaacctacattataataatttatttatttcacaaatgaatttctactatcggggaatttaccagatgacgtag
gi|22 : CGAGCGAATAC------GAA-GCCGTGCATTCGCGAATATGCGAGCTATTATGG-TATCACG--TAAGAT---TAAA---G----AA------A--A--ATGATATA----T--T--------TA-----CAAA------C-ATAAACTATCCGACGTTGAAAACCGGAAAT---G----AC------C-CTCTA------TTTT--CA--TGCGT-AATTTGGAACACTCGGATACATAGCTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-ttgtgctggcggtaaataaaaagaataataaaaaaagaagcgcagcatctcagaaatgtcttggttttagtatctaaaaccc
gi|3 : CAAGCGAATATGCGACCGAA-GCCG-GTGTTCTCAAATATGTGAGCTC--------A-CACG--TAGGAT---ATAA---A----AA------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----A-------AATCGGAAAT---G----ACAAAGTCT-CTCTG------TTTT--CA--TGGGT-GATTTGGAACACTCGGATATATAGGCTGCTATTAGTTCAATTACATAAA----AAGAATTTGA--A-TG----AAATCTTGTTTTACAAAT-TCACTTTTT-T---ATTTTGA-A--------------AG------------------------CTTTGCTGATATTTATGT--ATA--AA-A-----TATAATA---TACT-C--------------T----AAA-------A----------C-ACAAAATACCACTTT-AAA-TGTGAACAAAATGTTCAC----A---AAGAATAAA------TA-TT---TTCATGTCACC---AATAAA---T
gi|13 : agCGAGCAAATGCA-AAC-GAA-GCTGTGTATTCACGAGTACGAGAACTCTTATCGCTA-CACG--TACGAT---T-AA---A----AA------A--C--A-AACAAA----A------------A-----CAAAGAC---C-GTATACTG----ACATTAAAACCCGGAAAC---G----AT------A-ATC--ATT---GTTT--CCCTTGGGTGAATC-GGAACACTCGGTTATGCAGGCTGCTATTAATATGATTACATAAAATATAAGAATTCTG--A-CAC---AAATC--------CAA--------TTTT-T---ATGTTTACATCAT------GAACAGCCTT--T--------TT-T-AAA-GTTTGATGATAGTTTTGT--ACA--AA-A-----AATAATG---CATT-C--------------A----AAAT------A----------CAAC-----------TT---------CA---AAAGT--AC----ATAAAAGAGTAAAT-----aagaataaaaaagaattgcagcgtctcggaaatgtcttggtttaagtatataaaacccagcggttttattattta
gi|6 : agGAGCGAATGCACGGC-AAA-GCCGTGCATTCTCGAGTATGCAAGCTTTTATGG-TATCACG--TAAGAT---TAAAG--A----AA------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATATTA----ACGTTGAAAACCGGAAAT---G----AC------C-CTCTGTTT---TTTTTTCA--TGCGT-AATTTAGACCACTCGGCTACGTAGGTTGTTTTTAATTTTATTACATAAAATACAGGAATTCTG-AA-CAA---AAATCCGAGTTTAAAAAG-CCACTTTTT-----ATCTTAA-ATCAT------GAATAG--TCA-T--------TT-C-AAATCTCTCCTTATAATTACGT--A-C--AACA-----TAAAACA---TAAT-T--------------A----AAA-------A----------C-AC-----------TA-AAA-TATACACAAAACCT--AC----AT--TATAATAATT-----TA-TT---T--ATTTCACA---AATGAA---TTTC-TACTATCGGGGAATTTACCAGATGACGTAGaaaaat
gi|4 : AGCGAATGT--GGC-GAA-GCTGTGCATTTGCAAGTATGCGAG------TGG-TAACACG--TAAGAT---T-AA---A----AA------A--AGGA-GAAAAA----A--A--------TA-----CAGG------T-ATATACTA----ACCTTGAAAACCGTAAAT---G----AC------------AAATAAGTTTG--CA--TGGGT-GATTTAGAACACTCGGATATAAAGCCTGCTATTAATTCGAT--CTTAGGATATACGAATTCT--TA-CGA---AA-TCTTGTTTTACAAAT-TCACTTTTT-T---ATTTTGA-ATCAG------GAATAT--TTA-T--------TTAC-AAAGCTCTGCTGATATTCGTGT--ATA--AC-A-----GATACTA---TACT-T--------------A----AAA-------ACACAATACACC-AC-----------TT-AAA-TGTACACAAAATGT--AC----ATA-AAGAATAAA
gi|19 : AGCGAATGTGCAGC-GAA-AATGTGCATTCGCGAGTATCCGAGCTCATATGG-TAGCACG--AAAGAT---T-AA---A----AA------AGCA--A-AATAAA----TAATA-------TA-----CAGATATGCAC-ATGTACTA----AAGTTGAAAACCGGAACT---G----ACAAA---T-CTCTG------TGTT--CA--TGGGT-TATTTGGAACACTCGGATATATTGGCTGCTATAAGTTCAATTACATAGAATATAAGAATTCT--TA-Caaaactgccaccgataaataacaagaatattaaaaaaataaccgaagcgtctcggaaatgtctgttgatactaaagctcag
gi|25 : gccAGCGGATGTATGGC-AAA-GCTG-GCATTCGTGAGTATGCGAGCTCAGCTGG-TAACATG--TTAGA----TTAA---A----AA------A--A--A-AATA-------------------A-----TAAA------CAATATAC
gi|20 : atagctGCGTGG--GAATGTTGTGCACTCGCCAGTATGCAAGCTTTTATTG-TAACCCC--TAA--------------------------A--A--A------------------------A-----CAA-------T-ATATACTA----ATGCT-AAAAACTAAAAC---GCCGTAC------CTCTCTG--------TT--CA--TGGGT-GATTCGGAACATTCGGTTGTAAAGGCTGTCATTAGTTTGATT-----AGACATG-----TATG-TA-C-A---TAAT---GTCTTACAACG-CCCCTTTTA-C---ATTTTGA-AACAT------GAATagatata
gi|10 : AGTATGCGAGGTCTTATGG-TATCACT--TAAGAT---TTAAT--A----AA------A--C--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAAT---G----AC------C-CTCTACCT---TTTT--CA--TGCGT-AATTTGGAACACTCGGCTATGTAGGTTGCTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCAGGTTTACAAAA-TCACTTTTT-T---ATCTTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAATCTCTCCTTATAATAACGT--ATA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AC------------T-AACATATACACAAAACGT--AC----AT--TATAATAATT-----TA-TT---T--ATTTCACA---AATACA---TTTC-TGCTATATGGAAATTTACCAGACGACtct
gi|27 : gGTATGCGAGCTCACATGT-TAACACC--TAGGATATATTAA---ATACAAA------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAAT---G----Att
gi|26 : gGTATGCGAGCTCACATGT-TAACACC--TAGGATATATTAA---ATACAAA------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAAT---G----A
gi|14 : gTATGCAAGCTC--ATGG-TAACACGAATCAGAA---ACAA---A----AC------A--A--A-AATAAA----T--C--------TAATATTCAAA------T-ATATACTA----ACGTTGAAAACCGGAAAT---GACA-AC------T-CCCTG------TTTT--CA--TAAGT-GATTTGGAACACTCGGATATATTAGCTGTTTC------GATTATATAAGATATAATAATTCTT-TA---A---AAATATTGATTTACAAAT-TCACTTTTT-T---ATTTCGA-ATCAT------GAATAG--TTA-TATGACTCGTT-C-CAATC-ATCTTTATGACT
gi|12 : ATGCGAGCTGTTACGG-TATCACG--TAAG-T---TTAA---AGA--AA------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAAT---G----AC------C-CTCTG------TTTT--CA--TGCGA-AATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAA-TCA-TTTTT-T---ATTTTGA-ATCAT------G-ATAG--TTA-T--------TT-C-AAATCTCTCTTTATAGTTACGT--ACA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AT-----------TTAAAA-TATACACAAAATGT--AC----AT--TATAATAATT-----TA-TT---A--ATTATGGA---AATAAA---TTTC-TGCTACAGGGAAATTTACCAGATGACGTAgacattggttacctatcaaagctagaattaaatttaaa
gi|11 : tgaaATGCGAGCTGTTACGG-TATCACG--TAAG-T---TTAA---AGA--AA------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAAT---G----AC------C-CTCTG------TTTT--CA--TGCGA-AATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAA-TCA-TTTTT-T---ATTTTGA-ATCAT------G-ATAG--TTA-T--------TT-C-AAATCTCTCTTTATAGTTACGT--ACA--AA-A-----TATAATA---TATT-T--------------A----AAA-------A----------C-AT-----------TTAAAA-TATACACAAAATGT--AC----AT--TATAATAATT-----TA-TT---A--ATTATGGA---AATAAA---TTTC-TGCTACAGGGAAATTTACCAGATGACGTA
gi|29 : tgaaTATGG-TATCACG--TAAGAT---T-AA---A----GA------A--A--A-TATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAAT---G----AC------C-CT
gi|8 : gcgaaA---A----AA------A--T--A-AACA-A----T--A--------TA-----CAAA------T-ATATACTA----ACGTTGAAAATCGGAAATAACA----AC------T-CTCCAG------TTT--CA--TGGGT-GATTTGGGACACTCGGATATGTAGGTTGCTATTAGTTTGATTACATAAAATATAAGAATTCT--TT-TG----AAATCTTGTTTTACAAAT-TCATTTTTTAC---ATTTTGA-TTCAT------CAATAG--TTA-T--------TT-TAAAAGTTCTGCTGATATTCATGT--ATA--AA-A-----TATATTA---TACT-A--------------T----AAA-------A----------C-AC--------------AATGTAC-CACTT----T--AA----AT--GAAAACAAA-------A-TG---T--AT---ACAAAGAATAAACATTTTCATGCT
gi|15 : ag---TTTT--CA--TGTGT-AATTTGGAACACTCGGCTATGTAGCTTGTTTTTTATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTGGGTTTACAAAA-TCATTTTTT-T---ATCTTGA-ATCAT------GAATAG--TTA-T--------TT-C-AAATCTCTGCTTATAATTACGT--ACA--AA-A-----TATAATA---CATT-T--------------A----AAA-------A------------AC-----------TA-AAA-TATACACAAAACGT--AC----AT--TATAATAATT-----TA-TT---T--ATTTCACA---AATAAA---TTTC-TGCTAAAGGGAAATTTACCAGATGACgctgataaataacaagaataataaaaaaagaatcgcagcatctcggaaatgtatctaaattttagtatctaaaatgcagcggttttattat
gi|18 : tgTTAGATCACATTAAAAATAAGAAATTT--TA-CGA---AA-TCTTG-TTTACAAAA-TC-CTTTTT-TTAAATGTTGA-ATAAT------AAATAA--TCACT--------TT-A-AAAGCTCTGTTGAT-ATTACTT--T-ACCAA-ATGAGGTATATTC---TATT-TTTTTGTAACACAAAA----AAA-------A----------T-ACACGCCT-----TT-AAA-TGTATACAAAATGT--AC----ATA-TAAAATAAATAAAAATA-TTAAAT--ATTTTTCC---AAAAAA---Tttcg
gi|28 : TTCAATTACATAGAATATAAGAATTCT--TA-CAT---AACTTCGaac
gi|16 : ATTTTAATAGCGAGCTAAATCTTGTTTTACAAAT-TCACTTTTT-A---ATTTTGA-ATCATGAAGCAGAACAG--TTA-T--------TT-TGAAAGCTTTGCTGATATTCATGTTCA-A--AA-T-----TATGATA---TACT-T--------------A----AAA-------A----------C-ACAACT-------TT-AAA-TGTACACAAAATGT--AC----ATA-AAGAATAAAT-----AACTT---C--ATGTAGCC---GATAAA---Ttgccgccgaaaaataagaataatagaaaagaatcgcagcgtctcggaaa
gi|21 : tgtagatc---AAATCTTGTTTTACAAAT-TCACTTTTT-T---ATTTTGA-ATCAT------GAATAG--TTA-T--------TT-TGAAAGCTTGGCTGAT------GT--ATA--AA-A-----TATACTG---TAAA-C--------------A----AAA-------AACCC------C-ACT----------TT-AAA-TGTATACAAAATGT--AC----ATA-AAGAATAAAT-----gataagaacgataaaaaagaattgcagtgtctcgg
gi|17 : cgTTTTT-T---ATTTTGA-ATCAT------CAATA---TTA-T--------TT-CGAAAGCTCTGCTGATATTCATAT--ATA--AT-A-----CATAATAAATTATTAT--------------ACTATAAA-------A----------C-ACAATATACCACTTT-AAA-TAAAAACAAAATGT--AC----ACA-AAGAATAAA------TA-TT---T--aacattgtgcccccaattgataacaagaagaatgaaaaaagaatcgcagagtctcggaaatgt
gi|24 : AT------GAATA---TTA-T--------TT-C-AAATCTCTTCTTATAATTACGT--ACA--AA-A-----TAAAGTA---T-TT-T--------------A----AAA-------A----------T-AC-----------TA-AAA-TATATAAAAAACGT--AC----AT--TAGGATGATT-----TA-TT---T--ACTTCAC----AATTAA---TTTC-TGCTATAGAGAAATTTACCAGATGACtcgtgccgccgataaataacaaaaaataatcgcagcgtctcggaaatgtcctggttttagtatctaaaacccgttgattttagtattta
Alignments
lowQualScore : 11111111 1111 3333333333333333 222222 111 1 1111111111111111111 1111111111 55555555555 11 111111111 111111
lowQualScore : 4 2 2 1 4 1 22 33333333 5 2222 1 666666666 22 1 5 6666666666666666 44444 888888 1 4444 888888 2 333 22 333 777 55555 2 1 1 3 2 1 555 2 1 333 2 3 1 2 333 2 555555 22 2 77777777 2 2 1 2 555555 1 333 3 2 2 4 2 333 2 5555555555555555555 4444 8888888 3333333333 2 77777777777 6 33 55 2 222222222 2 000000 0 0
lowQualScore : . . . . . . .. ........ . .... . ......... .. . . ................ ..... ...... . .... ...... . ... .. ... ... ..... . . . . . . ... . . ... . . . . ... . ...... .. . ........ . . . . ...... . ... . . . . . ... . ................... .... ....... .......... . ........... . .. .. . ......... . ...... . .
lowQualScore : 1 9 9 6 9 0 66 44444444 5 7777 8 888888888 55 8 2 2222222222222222 55555 444444 8 0000 222222 1 777 99 777 444 33333 1 0 0 1 5 8 444 0 5 777 5 8 7 0 555 0 555555 88 0 22222222 0 0 0 0 888888 2 555 7 0 0 0 0 555 0 5555555555555555555 2222 9999999 7777777777 1 11111111111 3 55 22 2 555555555 5 888888 2 1
consensus : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATAA--NT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
Reference ( family-127 ) : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GNGTAATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATATACACAAAA-CGTACATANAGAATAA--NT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
gi|1 : GAATATGGGTGAATGT-CGGC-GAA-GCCGAGCATCCGCAAGTATGCAAGCTCATATGGTAACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----ACGTTGAAAAACAGAAATGACAAC---TC-T---C--T---G---TTTC-----CAT-GGGTGATTTGGAACACTCAGATATATAGGCTGCTATTAGTTTGATTACATAAAATGTAAGAATTCTA--A-C-A---AAATCTTGTTTTATGAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAA--TTG-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAA-TA---TACT-T-------------------T----AAA-------A----------C-ACAAAATACAACTTT-AAATGTGAACAAAA-TGTACCCAAATAATAA--A------TA-TT---TTCGTGCCGCAGATAAAT
gi|10 : GAGTATGCGAGGTCTTATGGTATCACT--TAAGAT---TT---AATA----A-A------A--C--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---ACCTTTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGCTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCAGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATAACGT-A-TAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-ACATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATACATTTCTGCTATATGGAAATTTACCAGACGACaagaagaataataaaaaagaatctcagcctcttggaaatgtcttggtttttagtatttaaaacccagcggttttattattcaa
gi|11 : ATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTAtt
gi|12 : tgaaATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTA
gi|13 : tgaaCGAGCAAATGCA-AAC-GAA-GCTGTGTATTCACGAGTACGAGAACTCTTATCGCTACACG--TACGAT---T----AA-A----A-A------A--C--A-AACAAA----A------------A-----CAAAGAC---C-GTATACTG----ACATTAAAACCCGGAAACGAT------AA-T---CATT---G---TTTC-----CCTTGGGTGAATCGGAACACTCGGTTATGCAGGCTGCTATTAATATGATTACATAAAATATAAGAATTCTG--A-CAC---AAATC--------CAA-------TTTT-T---ATGTTTACATCAT------GAACAGCCTT--T--------TT-T-AAAG--TTT-----GATGA---TAGTTTTGT-A-CAAAA-AATAA-TG---CATT-C-------------------A----AAAT------A----------CAAC-----------TTCAAAAGTACATAAAAGAGTAAATAAAAA
gi|14 : agTATGCAAGCTC--ATGGTAACACGAATCAGAA---AC---AA-A----A-C------A--A--A-AATAAA----T--C--------TAATATTCAAA------T-ATATACTA----ACGTTGAAAACCGGAAATGACAAC---TC-C---C--T---G---TTTT-----CAT-AAGTGATTTGGAACACTCGGATATATTAGCTGTT------TCGATTATATAAGATATAATAATTCTT-TA---A---AAATATTGATTTACAAATTCACTTTTT-T---AT-TTCGAATCAT------GAATAG--TTA-TATGACTCGTT-C-CAATCATCTTTATGACTGACATTGGTTACCT-ATCAAAGCTAGAATTA---AATT-T-------------------A----AAt
gi|15 : --T---G---TTTT-----CAT-GTGTAATTTGGAACACTCGGCTATGTAGCTTGTTTTTTATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTGGGTTTACAAAATCATTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----GCTTA---TAATTACGT-A-CAAAA-TATAA-TA---CATT-T-------------------A----AAA-------A------------AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAC
gi|16 : ATTTTAATAGCGAGCTAAATCTTGTTTTACAAATTCACTTTTT-A---AT-TTTGAATCATGAAGCAGAACAG--TTA-T--------TT-TGAAAGC-TTT-----GCTGA---TATTCATGT-T-CAAAATTATGA-TA---TACT-T-------------------A----AAA-------A----------C-ACAACT-------TT-AAATGTACACAAAA-TGTACATAAAGAATAA--AT-----AACTT---C--ATGTAGCCGATAAATttcg
gi|17 : tgtagatcTTTTT-T---AT-TTTGAATCAT------CAATA---TTA-T--------TT-CGAAAGC-TCT-----GCTGA---TATTCATAT-A-TAATA-CATAA-TAAATTATTAT-------------------ACTATAAA-------A----------C-ACAATATACCACTTT-AAATAAAAACAAAA-TGTACACAAAGAATAA--A------TA-TT---TTCGTGCCGCCGATAAATgataagaacgataaaaaagaattgcagtgtctcgg
gi|18 : TTAGATCACATTAAAAATAAGAAATTT--TA-CGA---AA-TCTTG-TTTACAAAATC-CTTTTT-TTAAAT-GTTGAATAAT------AAATAA--TCACT--------TT-A-AAAGC-TCT-----GTTGA---TA-TTACTTTA-CCAAA-TGAGG-TA---TATT-CTATTTTTTTGTAACACAAAA----AAA-------A----------T-ACACGCCT-----TT-AAATGTATACAAAA-TGTACATATAAAATAA--ATAAAAATA-TTAAAT--ATTTTTCCAAAAAATaacaaaaaataatcgcagcgtctcggaaatgtcctggttttagtatctaaaacccgttgattttagtattta
gi|19 : AGCGAATGTGCAGC-GAA-AATGTGCATTCGCGAGTATCCGAGCTCATATGGTAGCACG--AAAGAT---T----AA-A----A-A------AGCA--A-AATAAA----TAATA-------TA-----CAGATATGCAC-ATGTACTA----AAGTTGAAAACCGGAACTGACAAA---TC-T---C--T---G---TGTT-----CAT-GGGTTATTTGGAACACTCGGATATATTGGCTGCTATAAGTTCAATTACATAGAATATAAGAATTCT--TA-Caac
gi|2 : gccATACGAACGAATGTGTGGC-AAA-GCCATGCATTCGTGAGTATGCAAGCTCATATGGTAACATG--TAGGAT---AT---AA-A----A-ACAAAACA--A--A-AATAAA----TGATA-------TA-----CAGA------T-ATATACTA----AAATTGAAAATCGGAAATGACAAC---TC-A---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGTATATATAGGCTGCTATTAGTTTGATTACATAAAATATAAAAATTCTG--A-C-A---AAATCTTGTTTTTAAAATTCATTTTTT-T---AT-TTTGAATCAT------CAATAG--TTA-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------A----AAAAAACAATA----------C-ACCACT-------TT-AAATGTAAACAAAA-TGTACACAAAGAATAA--A------TA-TT---T--
gi|20 : GCGTGG--GAATGTTGTGCACTCGCCAGTATGCAAGCTTTTATTGTAACCC------------CT---AA-A----A-A-------------------------------------A-----C-AA------T-ATATACTA----ATGCTAAAAACT-AAAACGCCGTA---CC-T---C--T---C---TGTT-----CAT-GGGTGATTCGGAACATTCGGTTGTAAAGGCTGTCATTAGTTTGATTA---GACATGTA-------TG-TA-C-A---TAAT---GTCTTACAACGCCCCTTTTA-C---AT-TTTGAAACAT------GAATttgtgctggcggtaaataaaaagaataataaaaaaagaagcgcagcatctcagaaatgtcttggttttagtatctaaaaccc
gi|21 : ---AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-TGAAAGC-TTG-----GCTGA---T------GT-A-TAAAA-TATAC-TG---TAAA-C-------------------A----AAA-------AACCC------C-ACT----------TT-AAATGTATACAAAA-TGTACATAAAGAATAA--AT-----tct
gi|22 : cgCGAGCGAATACG------AA-GCCGTGCATTCGCGAATATGCGAGCTATTATGGTATCACG--TAAGAT---TA---AA-G----A-A------A--A--ATGATATA----T--T--------TA-----CAAA------C-ATAAACTATCCGACGTTGAAAACCGGAAATGAC------CC-T---C--T---A---TTTT-----CAT-GCGTAATTTGGAACACTCGGATACATAGCTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-aacattgtgcccccaattgataacaagaagaatgaaaaaagaatcgcagagtctcggaaatgt
gi|23 : AATACGAGCGAATGCGCAGC-GAA-GCTGTGCATACGCGAGTATTCGAGCTCTTATGGTATCACG--TAAGAT---TCAAGAA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTAAAAAATGGAAATGAC------CC-TCTAC--T---G---TTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTT
gi|24 : AT------GAATA---TTA-T--------TT-C-AAATC-TCT-----TCTTA---TAATTACGT-A-CAAAA-TAAAG-TA---T-TT-T-------------------A----AAA-------A----------T-AC-----------TA-AAATATATAAAAAA-CGTACAT-TAGGATGA--TT-----TA-TT---T--ACTTCACAATTAA-TTTCTGCTATAGAGAAATTTACCAGATGAC
gi|25 : AGCGGATGTATGGC-AAA-GCTG-GCATTCGTGAGTATGCGAGCTCAGCTGGTAACATG--TTAGA----TT---AA-A----A-A------A--A--A-AATA-------------------A-----TAAA------CAATATAC
gi|26 : atagctGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGAagatata
gi|27 : gGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGA
gi|28 : gTTCAATTACATAGAATATAAGAATTCT--TA-C
gi|29 : TATGGTATCACG--TAAGAT---T----AA-A----G-A------A--A--A-TATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---ataacttcgtgccgccgaaaaataagaataatagaaaagaatcgcagcgtctcggaaa
gi|3 : gcgaaCAAGCGAATATGCGACCGAA-GCCG-GTGTTCTCAAATATGTGAGCTC--------ACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----A-------AATCGGAAATGACAAAGTCTC-T---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGGATATATAGGCTGCTATTAGTTCAATTACATAAA----AAGAATTTGA--A-TG----AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTG--------------------------------------AAAGC-TTT-----GCTGA---TATTTATGT-A-TAAAA-TATAA-TA---TACT-C-------------------T----AAA-------A----------C-ACAAAATACCACTTT-AAATGTGAACAAAA-TGTTCACAAAGAATAA--A------TA-TT---TTCATGTCACCAATAAAT
gi|4 : agAGCGAATGTG--GC-GAA-GCTGTGCATTTGCAAGTATGCGAG------TGGTAACACG--TAAGAT---T----AA-A----A-A------A--AGGA-GAAAAA----A--A--------TA-----CAGG------T-ATATACTA----ACCTTGAAAACCGTAAATGAC------AAAT---A--A---G---TTTG-----CAT-GGGTGATTTAGAACACTCGGATATAAAGCCTGCTATTAATTCGAT--CTTAGGATATACGAATTCT--TA-CGA---AA-TCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAG------GAATAT--TTA-T--------TTAC-AAAGC-TCT-----GCTGA---TATTCGTGT-A-TAACA-GATAC-TA---TACT-T-------------------A----AAA-------ACACAATACACC-AC-----------TT-AAATGTACACAAAA-TGTACATAAAGAATAA--aagaataaaaaagaattgcagcgtctcggaaatgtcttggtttaagtatataaaacccagcggttttattattta
gi|5 : GCGAGCGAATACGAGCGAATGCACGGC-GAA-GCCGTGCATTCGCAAGTATGCGAGCTCTTATGGTATCACC--TAAGAT---TT---AA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---GATTTTTT-----CAT-GCGTAATCTGAAACTCTCGGCTACGTAGGTTGTTTCTAATTTGATTGCATAAAATATAAGAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A--AAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AATTATACACATAA-CGTACAT-TAGAATAA--AT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAGaaaaactgccaccgataaataacaagaatattaaaaaaataaccgaagcgtctcggaaatgtctgttgatactaaagctcag
gi|6 : aGAGCGAATGCACGGC-AAA-GCCGTGCATTCTCGAGTATGCAAGCTTTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATATTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTTTTTTTCAT-GCGTAATTTAGACCACTCGGCTACGTAGGTTGTTTTTAATTTTATTACATAAAATACAGGAATTCTG-AA-CAA---AAATCCGAGTTTAAAAAGCCACTTTTT-----AT-CTTAAATCAT------GAATAG--TCA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAACA-TAAAA-CA---TAAT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CCTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATGAATTTCTACTATCGGGGAATTTACCAGATGACGTAG
gi|7 : GAATACGAGCGAATGAACGGC-GAA-GCCGTGCATTCGCGAGTATGAGAGCTCTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--TTCTG---TTTT-----CAT-GCGTAGTTTGGAATATTTGGCTATGTACGTTGTTTTTAATTTGATTACATAAAATATTGAAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATAACTTTTT-T---AT-CCTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTAC
gi|8 : A-A----A-A------A--T--A-AACA-A----T--A--------TA-----CAAA------T-ATATACTA----ACGTTGAAAATCGGAAATAACAAC---TC-T---C--C---A---GTTT-----CAT-GGGTGATTTGGGACACTCGGATATGTAGGTTGCTATTAGTTTGATTACATAAAATATAAGAATTCT--TT-TG----AAATCTTGTTTTACAAATTCATTTTTTAC---AT-TTTGATTCAT------CAATAG--TTA-T--------TT-TAAAAGT-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------T----AAA-------A----------C-ACAATGTACCACTTT-AAATGAAAACAAAA-TGTATACAAAGAATAAACAT-----T--TT---C--ATGCTGCTGATAAAT
gi|9 : agGCGAGCGAATACGAGCAAATGCGCGGC-GAA-------------------T-----CTCTTATAGTATCACG--TATGAT---TA---AA-A----AAA------A--A--A-GATATA----T--T--------TG-----CAAA------C-ATATACTA----ACGATTAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAA-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCGAGTTTACAAAGCCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TATTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAaacaagaataataaaaaaagaatcgcagcatctcggaaatgtatctaaattttagtatctaaaatgcagcggttttattat
Alignments
lowQualScore : 11111111 1111 3333333333333333 222222 111 1 1111111111111111111 1111111111 55555555555 11 111111111 111111
lowQualScore : 4 2 2 1 4 1 22 33333333 5 2222 1 666666666 22 1 5 6666666666666666 44444 888888 1 4444 888888 2 333 22 333 777 55555 2 2 1 3 2 1 555 2 1 333 2 3 1 2 333 2 555555 22 2 77777777 2 2 1 2 555555 1 333 3 2 2 4 2 333 2 5555555555555555555 4444 8888888 3333333333 2 77777777777 6 33 55 1 222222222 2 000000 0 0
lowQualScore : . . . . . . .. ........ . .... . ......... .. . . ................ ..... ...... . .... ...... . ... .. ... ... ..... . . . . . . ... . . ... . . . . ... . ...... .. . ........ . . . . ...... . ... . . . . . ... . ................... .... ....... .......... . ........... . .. .. . ......... . ...... . .
lowQualScore : 1 9 9 6 9 0 66 44444444 5 7777 8 888888888 55 8 2 2222222222222222 55555 444444 8 0000 222222 1 777 99 777 444 33333 1 7 0 1 5 8 444 0 5 777 5 8 7 0 555 0 555555 88 0 22222222 0 0 0 0 888888 2 555 7 0 0 0 0 555 0 5555555555555555555 2222 9999999 7777777777 1 11111111111 3 55 22 0 555555555 5 888888 2 1
consensus : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATAA--NT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
Reference ( family-127 ) : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATAA--NT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
gi|1 : GAATATGGGTGAATGT-CGGC-GAA-GCCGAGCATCCGCAAGTATGCAAGCTCATATGGTAACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----ACGTTGAAAAACAGAAATGACAAC---TC-T---C--T---G---TTTC-----CAT-GGGTGATTTGGAACACTCAGATATATAGGCTGCTATTAGTTTGATTACATAAAATGTAAGAATTCTA--A-C-A---AAATCTTGTTTTATGAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAA--TTG-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAA-TA---TACT-T-------------------T----AAA-------A----------C-ACAAAATACAACTTT-AAATGTGAACAAAA-TGTACCCAAATAATAA--A------TA-TT---TTCGTGCCGCAGATAAAT
gi|10 : GAGTATGCGAGGTCTTATGGTATCACT--TAAGAT---TT---AATA----A-A------A--C--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---ACCTTTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGCTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCAGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATAACGT-A-TAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-ACATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATACATTTCTGCTATATGGAAATTTACCAGACGACaagaagaataataaaaaagaatctcagcctcttggaaatgtcttggtttttagtatttaaaacccagcggttttattattcaa
gi|11 : ATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTAtt
gi|12 : tgaaATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTA
gi|13 : tgaaCGAGCAAATGCA-AAC-GAA-GCTGTGTATTCACGAGTACGAGAACTCTTATCGCTACACG--TACGAT---T----AA-A----A-A------A--C--A-AACAAA----A------------A-----CAAAGAC---C-GTATACTG----ACATTAAAACCCGGAAACGAT------AA-T---CATT---G---TTTC-----CCTTGGGTGAATCGGAACACTCGGTTATGCAGGCTGCTATTAATATGATTACATAAAATATAAGAATTCTG--A-CAC---AAATC--------CAA-------TTTT-T---ATGTTTACATCAT------GAACAGCCTT--T--------TT-T-AAAG--TTT-----GATGA---TAGTTTTGT-A-CAAAA-AATAA-TG---CATT-C-------------------A----AAAT------A----------CAAC-----------TTCAAAAGTACATAAAAGAGTAAATAAAAA
gi|14 : agTATGCAAGCTC--ATGGTAACACGAATCAGAA---AC---AA-A----A-C------A--A--A-AATAAA----T--C--------TAATATTCAAA------T-ATATACTA----ACGTTGAAAACCGGAAATGACAAC---TC-C---C--T---G---TTTT-----CAT-AAGTGATTTGGAACACTCGGATATATTAGCTGTT------TCGATTATATAAGATATAATAATTCTT-TA---A---AAATATTGATTTACAAATTCACTTTTT-T---AT-TTCGAATCAT------GAATAG--TTA-TATGACTCGTT-C-CAATCATCTTTATGACTGACATTGGTTACCT-ATCAAAGCTAGAATTA---AATT-T-------------------A----AAt
gi|15 : --T---G---TTTT-----CAT-GTGTAATTTGGAACACTCGGCTATGTAGCTTGTTTTTTATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTGGGTTTACAAAATCATTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----GCTTA---TAATTACGT-A-CAAAA-TATAA-TA---CATT-T-------------------A----AAA-------A------------AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAC
gi|16 : ATTTTAATAGCGAGCTAAATCTTGTTTTACAAATTCACTTTTT-A---AT-TTTGAATCATGAAGCAGAACAG--TTA-T--------TT-TGAAAGC-TTT-----GCTGA---TATTCATGT-T-CAAAATTATGA-TA---TACT-T-------------------A----AAA-------A----------C-ACAACT-------TT-AAATGTACACAAAA-TGTACATAAAGAATAA--AT-----AACTT---C--ATGTAGCCGATAAATttcg
gi|17 : tgtagatcTTTTT-T---AT-TTTGAATCAT------CAATA---TTA-T--------TT-CGAAAGC-TCT-----GCTGA---TATTCATAT-A-TAATA-CATAA-TAAATTATTAT-------------------ACTATAAA-------A----------C-ACAATATACCACTTT-AAATAAAAACAAAA-TGTACACAAAGAATAA--A------TA-TT---TTCGTGCCGCCGATAAATgataagaacgataaaaaagaattgcagtgtctcgg
gi|18 : TTAGATCACATTAAAAATAAGAAATTT--TA-CGA---AA-TCTTG-TTTACAAAATC-CTTTTT-TTAAAT-GTTGAATAAT------AAATAA--TCACT--------TT-A-AAAGC-TCT-----GTTGA---TA-TTACTTTA-CCAAA-TGAGG-TA---TATT-CTATTTTTTTGTAACACAAAA----AAA-------A----------T-ACACGCCT-----TT-AAATGTATACAAAA-TGTACATATAAAATAA--ATAAAAATA-TTAAAT--ATTTTTCCAAAAAATaacaaaaaataatcgcagcgtctcggaaatgtcctggttttagtatctaaaacccgttgattttagtattta
gi|19 : AGCGAATGTGCAGC-GAA-AATGTGCATTCGCGAGTATCCGAGCTCATATGGTAGCACG--AAAGAT---T----AA-A----A-A------AGCA--A-AATAAA----TAATA-------TA-----CAGATATGCAC-ATGTACTA----AAGTTGAAAACCGGAACTGACAAA---TC-T---C--T---G---TGTT-----CAT-GGGTTATTTGGAACACTCGGATATATTGGCTGCTATAAGTTCAATTACATAGAATATAAGAATTCT--TA-Caac
gi|2 : gccATACGAACGAATGTGTGGC-AAA-GCCATGCATTCGTGAGTATGCAAGCTCATATGGTAACATG--TAGGAT---AT---AA-A----A-ACAAAACA--A--A-AATAAA----TGATA-------TA-----CAGA------T-ATATACTA----AAATTGAAAATCGGAAATGACAAC---TC-A---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGTATATATAGGCTGCTATTAGTTTGATTACATAAAATATAAAAATTCTG--A-C-A---AAATCTTGTTTTTAAAATTCATTTTTT-T---AT-TTTGAATCAT------CAATAG--TTA-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------A----AAAAAACAATA----------C-ACCACT-------TT-AAATGTAAACAAAA-TGTACACAAAGAATAA--A------TA-TT---T--
gi|20 : GCGTGG--GAATGTTGTGCACTCGCCAGTATGCAAGCTTTTATTGTAACCC------------CT---AA-A----A-A-------------------------------------A-----C-AA------T-ATATACTA----ATGCTAAAAACT-AAAACGCCGTA---CC-T---C--T---C---TGTT-----CAT-GGGTGATTCGGAACATTCGGTTGTAAAGGCTGTCATTAGTTTGATTA---GACATGTA-------TG-TA-C-A---TAAT---GTCTTACAACGCCCCTTTTA-C---AT-TTTGAAACAT------GAATttgtgctggcggtaaataaaaagaataataaaaaaagaagcgcagcatctcagaaatgtcttggttttagtatctaaaaccc
gi|21 : ---AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-TGAAAGC-TTG-----GCTGA---T------GT-A-TAAAA-TATAC-TG---TAAA-C-------------------A----AAA-------AACCC------C-ACT----------TT-AAATGTATACAAAA-TGTACATAAAGAATAA--AT-----tct
gi|22 : cgCGAGCGAATACG------AA-GCCGTGCATTCGCGAATATGCGAGCTATTATGGTATCACG--TAAGAT---TA---AA-G----A-A------A--A--ATGATATA----T--T--------TA-----CAAA------C-ATAAACTATCCGACGTTGAAAACCGGAAATGAC------CC-T---C--T---A---TTTT-----CAT-GCGTAATTTGGAACACTCGGATACATAGCTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-aacattgtgcccccaattgataacaagaagaatgaaaaaagaatcgcagagtctcggaaatgt
gi|23 : AATACGAGCGAATGCGCAGC-GAA-GCTGTGCATACGCGAGTATTCGAGCTCTTATGGTATCACG--TAAGAT---TCAAGAA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTAAAAAATGGAAATGAC------CC-TCTAC--T---G---TTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTT
gi|24 : AT------GAATA---TTA-T--------TT-C-AAATC-TCT-----TCTTA---TAATTACGT-A-CAAAA-TAAAG-TA---T-TT-T-------------------A----AAA-------A----------T-AC-----------TA-AAATATATAAAAAA-CGTACAT-TAGGATGA--TT-----TA-TT---T--ACTTCACAATTAA-TTTCTGCTATAGAGAAATTTACCAGATGAC
gi|25 : AGCGGATGTATGGC-AAA-GCTG-GCATTCGTGAGTATGCGAGCTCAGCTGGTAACATG--TTAGA----TT---AA-A----A-A------A--A--A-AATA-------------------A-----TAAA------CAATATAC
gi|26 : atagctGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGAagatata
gi|27 : gGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGA
gi|28 : gTTCAATTACATAGAATATAAGAATTCT--TA-C
gi|29 : TATGGTATCACG--TAAGAT---T----AA-A----G-A------A--A--A-TATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---ataacttcgtgccgccgaaaaataagaataatagaaaagaatcgcagcgtctcggaaa
gi|3 : gcgaaCAAGCGAATATGCGACCGAA-GCCG-GTGTTCTCAAATATGTGAGCTC--------ACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----A-------AATCGGAAATGACAAAGTCTC-T---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGGATATATAGGCTGCTATTAGTTCAATTACATAAA----AAGAATTTGA--A-TG----AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTG--------------------------------------AAAGC-TTT-----GCTGA---TATTTATGT-A-TAAAA-TATAA-TA---TACT-C-------------------T----AAA-------A----------C-ACAAAATACCACTTT-AAATGTGAACAAAA-TGTTCACAAAGAATAA--A------TA-TT---TTCATGTCACCAATAAAT
gi|4 : agAGCGAATGTG--GC-GAA-GCTGTGCATTTGCAAGTATGCGAG------TGGTAACACG--TAAGAT---T----AA-A----A-A------A--AGGA-GAAAAA----A--A--------TA-----CAGG------T-ATATACTA----ACCTTGAAAACCGTAAATGAC------AAAT---A--A---G---TTTG-----CAT-GGGTGATTTAGAACACTCGGATATAAAGCCTGCTATTAATTCGAT--CTTAGGATATACGAATTCT--TA-CGA---AA-TCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAG------GAATAT--TTA-T--------TTAC-AAAGC-TCT-----GCTGA---TATTCGTGT-A-TAACA-GATAC-TA---TACT-T-------------------A----AAA-------ACACAATACACC-AC-----------TT-AAATGTACACAAAA-TGTACATAAAGAATAA--aagaataaaaaagaattgcagcgtctcggaaatgtcttggtttaagtatataaaacccagcggttttattattta
gi|5 : GCGAGCGAATACGAGCGAATGCACGGC-GAA-GCCGTGCATTCGCAAGTATGCGAGCTCTTATGGTATCACC--TAAGAT---TT---AA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---GATTTTTT-----CAT-GCGTAATCTGAAACTCTCGGCTACGTAGGTTGTTTCTAATTTGATTGCATAAAATATAAGAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A--AAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AATTATACACATAA-CGTACAT-TAGAATAA--AT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAGaaaaactgccaccgataaataacaagaatattaaaaaaataaccgaagcgtctcggaaatgtctgttgatactaaagctcag
gi|6 : aGAGCGAATGCACGGC-AAA-GCCGTGCATTCTCGAGTATGCAAGCTTTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATATTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTTTTTTTCAT-GCGTAATTTAGACCACTCGGCTACGTAGGTTGTTTTTAATTTTATTACATAAAATACAGGAATTCTG-AA-CAA---AAATCCGAGTTTAAAAAGCCAC-TTTT-T---AT-CTTAAATCAT------GAATAG--TCA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAACA-TAAAA-CA---TAAT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CCTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATGAATTTCTACTATCGGGGAATTTACCAGATGACGTAG
gi|7 : GAATACGAGCGAATGAACGGC-GAA-GCCGTGCATTCGCGAGTATGAGAGCTCTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--TTCTG---TTTT-----CAT-GCGTAGTTTGGAATATTTGGCTATGTACGTTGTTTTTAATTTGATTACATAAAATATTGAAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATAACTTTTT-T---AT-CCTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTAC
gi|8 : A-A----A-A------A--T--A-AACA-A----T--A--------TA-----CAAA------T-ATATACTA----ACGTTGAAAATCGGAAATAACAAC---TC-T---C--C---A---GTTT-----CAT-GGGTGATTTGGGACACTCGGATATGTAGGTTGCTATTAGTTTGATTACATAAAATATAAGAATTCT--TT-TG----AAATCTTGTTTTACAAATTCATTTTTTAC---AT-TTTGATTCAT------CAATAG--TTA-T--------TT-TAAAAGT-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------T----AAA-------A----------C-ACAATGTACCACTTT-AAATGAAAACAAAA-TGTATACAAAGAATAAACAT-----T--TT---C--ATGCTGCTGATAAAT
gi|9 : agGCGAGCGAATACGAGCAAATGCGCGGC-GAA-------------------T-----CTCTTATAGTATCACG--TATGAT---TA---AA-A----AAA------A--A--A-GATATA----T--T--------TG-----CAAA------C-ATATACTA----ACGATTAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAA-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCGAGTTTACAAAGCCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TATTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-TGTACAT-TATAATAA--TT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAaacaagaataataaaaaaagaatcgcagcatctcggaaatgtatctaaattttagtatctaaaatgcagcggttttattat
blockSeqs : C C T T T T AA TCAAG T TACA A CAAAACA GG T T ATTAAACAATA ATATT TATGCA A TCCG AAAGTC A CTA AT TCT CCT TTTTT T C C T T G AAT G G GCT A G A A TAA G GAAGCA CC C ATGACTCG A G T A TTATGA T CAT A T T C T AAT A TATTTTTTTGTAACACAAA CTAT AAACAAT CACAATACAC A AATATACCACT A GA AA T ATAAAAA C AAAT
blockSeqs : T . . T T T . ATATT G TACA . AGC . . T ACAATA . GAC . . AAC . . . . ATT . . C C T T G AT . G . G G A . . . . . . . . G T . C T . G . . T . . . . . T ACCC . AAAATACCACT A C AA T ACAT . TTC
blockSeqs : T . . T T T . ATATT G GA . AC . . T ACAATA . . . . AAA . . . . . . . C C T T G TT . G . G G A . . . . . . . . G T . C T . G . . . . . . . . . . . AATGTACCACT C T AA T TT . TTC
blockSeqs : C . . T T A . TT . GA . AC . . A TAATA . . . . AAC . . . . . . . G T A T A AT . A . T A T . . . . . . . . G G . C G . G . . . . . . . . . . . ACGCCT . T AT A TT . T
blockSeqs : T . . T A A . TT . . . A . . A TGATA . . . . GTA . . . . . . . A A T C A GT . G . G G A . . . . . . . . A T . G G . G . . . . . . . . . . . AACT . C AA T TT . A
blockSeqs : C . . T A G . TT . . . A . . A TT . . . . AAC . . . . . . . T C A T G AT . G . T T T . . . . . . . . . T . G T . A . . . . . . . . . . . CACT . T AA G TT . A
blockSeqs : C . . T T A . AC . . . A . . A TC . . . . . . . . . . . . G A A A A GA . G . T T A . . . . . . . . . G . G G . T . . . . . . . . . . . T . T AA G AT . T
blockSeqs : C . . T T A . AT . . . A . . T TT . . . . . . . . . . . . G A A C A AT . G . T T T . . . . . . . . . G . G G . T . . . . . . . . . . . . . T AA A AT . C
blockSeqs : C . . T T T . CT . . . A . . T TT . . . . . . . . . . . . G T T T A AT . G . T T G . . . . . . . . . G . G G . T . . . . . . . . . . . . . T AA G TT . T
blockSeqs : C . . T A T . TA . . . A . . A TT . . . . . . . . . . . . C A T T G T . G . T T T . . . . . . . . . G . G G . A . . . . . . . . . . . . . T T G AT . T
blockSeqs : . . . . A A . TT . . . A . . A AA . . . . . . . . . . . . C C A T A T . A . T T T . . . . . . . . . G . G G . T . . . . . . . . . . . . . C T G TT . T
blockSeqs : . . . . A A . AT . . . A . . T TT . . . . . . . . . . . . G A A C A G . G . G G T . . . . . . . . . T . T T . T . . . . . . . . . . . . . T T G TT . T
blockSeqs : . . . . T A . TT . . . A . . A TT . . . . . . . . . . . . G A T C C T . G . G G A . . . . . . . . . G . G G . A . . . . . . . . . . . . . T T G TT . T
blockSeqs : T T . TA . . . C . . A TT . . . . . . . . . . . . C C T C A T . G . G G G . . . . . . . . . G . G G . A . . . . . . . . . . . . . C T G A . C
blockSeqs : T A . TA . . . A . . T TA . . . . . . . . . . . . C C T T G G . . . T T A . . . . . . . . . T . C T . A . . . . . . . . . . . . . C T T A . T
blockSeqs : T A . TA . . . A . . T TT . . . . . . . . . . . . C C A T G T . . . G G T . . . . . . . . . T . C T . T . . . . . . . . . . . . . C T T A
blockSeqs : . T . T . . . A . . T A . . . . . . . . . . . . G A T T A A . . . . . G . . . . . . . . . T . C T . T . . . . . . . . . . . . . T T G
blockSeqs : . T . T . . . A . . T . . . . . . . . . . . . . C C . T G T . . . . . . . . . . . . . . G . G G . . . . . . . . . . . . . . . T T T
blockSeqs : . T . T . . . A . . . . . . . . T . T . . . . . . . . . . T . C T . . . . . . . . . .
blockSeqs : T . T . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : TT************** ****** *********** TT******* T*****
originalCons : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATAA--NT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
finalCons : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANATT--------------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATAATT-------TA-TTT-----ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
Alignments
lowQualScore : 11111111 1111 3333333333333333 222222 111 1 1111111111111111111 1111111111 55555555555 11 1111111 111111
lowQualScore : 4 2 2 1 4 1 22 33333333 5 2222 1 666666666 22 1 5 6666666666666666 44444 888888 1 4444 888888 2 333 22 333 777 55555 2 2 1 3 2 1 555 2 1 333 2 3 1 2 333 2 555555 22 2 77777777 2 2 1 2 555555 1 333 3 2 2 4 2 333 2 5555555555555555555 4444 8888888 3333333333 2 77777777777 6 33 55 1 333 1111111 2 000000 0 0
lowQualScore : . . . . . . .. ........ . .... . ......... .. . . ................ ..... ...... . .... ...... . ... .. ... ... ..... . . . . . . ... . . ... . . . . ... . ...... .. . ........ . . . . ...... . ... . . . . . ... . ................... .... ....... .......... . ........... . .. .. . ... ....... . ...... . .
lowQualScore : 1 9 9 6 9 0 66 44444444 5 7777 8 888888888 55 8 2 2222222222222222 55555 444444 8 0000 222222 1 777 99 777 444 33333 1 7 0 1 5 8 444 0 5 777 5 8 7 0 555 0 555555 88 0 22222222 0 0 0 0 888888 2 555 7 0 0 0 0 555 0 5555555555555555555 2222 9999999 7777777777 1 11111111111 3 55 22 0 999 9999999 5 888888 2 1
consensus : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATA---ATT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
Reference ( family-127 ) : NGCGAGCGAATACGAGCGAATGCGCGGC-GAA-GCCGTGCATTCGCGAGTATGCGAGCTCTTATGGTANCACG--TAAGAT---TT---AA-A----A-A------A--A--A-GATANA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGTGATTTGGAACACTCGGNTATGTAGGCTGCTNTTAATTCGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTNGNTTTACAAANTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-C-AAANC-TCT-----GCTGA---TANTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AAATGTACACAAAA-CGTACATANANAATA---ATT-----TA-TT---T--ATTTCGCAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAG
gi|1 : GAATATGGGTGAATGT-CGGC-GAA-GCCGAGCATCCGCAAGTATGCAAGCTCATATGGTAACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----ACGTTGAAAAACAGAAATGACAAC---TC-T---C--T---G---TTTC-----CAT-GGGTGATTTGGAACACTCAGATATATAGGCTGCTATTAGTTTGATTACATAAAATGTAAGAATTCTA--A-C-A---AAATCTTGTTTTATGAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAA--TTG-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAA-TA---TACT-T-------------------T----AAA-------A----------C-ACAAAATACAACTTT-AAATGTGAACAAAA-TGTACCCAAATAATA---A-A-----TA-TT---TTCGTGCCGCAGATAAAT
gi|10 : GAGTATGCGAGGTCTTATGGTATCACT--TAAGAT---TT---AATA----A-A------A--C--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---ACCTTTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGCTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCAGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATAACGT-A-TAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-ACATATACACAAAA-CGTACAT-TATAATA---ATT-----TA-TT---T--ATTTCACAAATACATTTCTGCTATATGGAAATTTACCAGACGACaagaagaataataaaaaagaatctcagcctcttggaaatgtcttggtttttagtatttaaaacccagcggttttattattcaa
gi|11 : ATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATA---ATT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTAtt
gi|12 : tgaaATGCGAGCTGTTACGGTATCACG--TAAG-T---TT---AA-AGA--A-A------A--A--A-GATATA-----------------A-----CAAA------C-ATATAGTA----ACGTTGACAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAT-GCGAAATTTGGAACACTCGGCTACGTAGGTTGTTTTTAATTTGATTACATAAAATATCGGAATTCT--TA-CGA---AAATCTGGGTTTACAAAATCA-TTTTT-T---AT-TTTGAATCAT------G-ATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TAGTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AT-----------TTAAAATATACACAAAA-TGTACAT-TATAATA---ATT-----TA-TT---A--ATTATGGAAATAAATTTCTGCTACAGGGAAATTTACCAGATGACGTA
gi|13 : tgaaCGAGCAAATGCA-AAC-GAA-GCTGTGTATTCACGAGTACGAGAACTCTTATCGCTACACG--TACGAT---T----AA-A----A-A------A--C--A-AACAAA----A------------A-----CAAAGAC---C-GTATACTG----ACATTAAAACCCGGAAACGAT------AA-T---CATT---G---TTTC-----CCTTGGGTGAATCGGAACACTCGGTTATGCAGGCTGCTATTAATATGATTACATAAAATATAAGAATTCTG--A-CAC---AAATC--------CAA-------TTTT-T---ATGTTTACATCAT------GAACAGCCTT--T--------TT-T-AAAG--TTT-----GATGA---TAGTTTTGT-A-CAAAA-AATAA-TG---CATT-C-------------------A----AAAT------A----------CAAC-----------TTCAAAAGTACATAAAAGAGTAAATAAAAA
gi|14 : agTATGCAAGCTC--ATGGTAACACGAATCAGAA---AC---AA-A----A-C------A--A--A-AATAAA----T--C--------TAATATTCAAA------T-ATATACTA----ACGTTGAAAACCGGAAATGACAAC---TC-C---C--T---G---TTTT-----CAT-AAGTGATTTGGAACACTCGGATATATTAGCTGTT------TCGATTATATAAGATATAATAATTCTT-TA---A---AAATATTGATTTACAAATTCACTTTTT-T---AT-TTCGAATCAT------GAATAG--TTA-TATGACTCGTT-C-CAATCATCTTTATGACTGACATTGGTTACCT-ATCAAAGCTAGAATTA---AATT-T-------------------A----AAt
gi|15 : --T---G---TTTT-----CAT-GTGTAATTTGGAACACTCGGCTATGTAGCTTGTTTTTTATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCTGGGTTTACAAAATCATTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----GCTTA---TAATTACGT-A-CAAAA-TATAA-TA---CATT-T-------------------A----AAA-------A------------AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATA---ATT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAC
gi|16 : ATTTTAATAGCGAGCTAAATCTTGTTTTACAAATTCACTTTTT-A---AT-TTTGAATCATGAAGCAGAACAG--TTA-T--------TT-TGAAAGC-TTT-----GCTGA---TATTCATGT-T-CAAAATTATGA-TA---TACT-T-------------------A----AAA-------A----------C-ACAACT-------TT-AAATGTACACAAAA-TGTACATAAAGAATA---AAT-----AACTT---C--ATGTAGCCGATAAATttcg
gi|17 : tgtagatcTTTTT-T---AT-TTTGAATCAT------CAATA---TTA-T--------TT-CGAAAGC-TCT-----GCTGA---TATTCATAT-A-TAATA-CATAA-TAAATTATTAT-------------------ACTATAAA-------A----------C-ACAATATACCACTTT-AAATAAAAACAAAA-TGTACACAAAGAATA---A-A-----TA-TT---TTCGTGCCGCCGATAAATgataagaacgataaaaaagaattgcagtgtctcgg
gi|18 : TTAGATCACATTAAAAATAAGAAATTT--TA-CGA---AA-TCTTG-TTTACAAAATC-CTTTTT-TTAAAT-GTTGAATAAT------AAATAA--TCACT--------TT-A-AAAGC-TCT-----GTTGA---TA-TTACTTTA-CCAAA-TGAGG-TA---TATT-CTATTTTTTTGTAACACAAAA----AAA-------A----------T-ACACGCCT-----TT-AAATGTATACAAAA-TGTACATATAAAATA---AATAAAAATA-TTAAAT--ATTTTTCCAAAAAATaacaaaaaataatcgcagcgtctcggaaatgtcctggttttagtatctaaaacccgttgattttagtattta
gi|19 : AGCGAATGTGCAGC-GAA-AATGTGCATTCGCGAGTATCCGAGCTCATATGGTAGCACG--AAAGAT---T----AA-A----A-A------AGCA--A-AATAAA----TAATA-------TA-----CAGATATGCAC-ATGTACTA----AAGTTGAAAACCGGAACTGACAAA---TC-T---C--T---G---TGTT-----CAT-GGGTTATTTGGAACACTCGGATATATTGGCTGCTATAAGTTCAATTACATAGAATATAAGAATTCT--TA-Caac
gi|2 : gccATACGAACGAATGTGTGGC-AAA-GCCATGCATTCGTGAGTATGCAAGCTCATATGGTAACATG--TAGGAT---AT---AA-A----A-ACAAAACA--A--A-AATAAA----TGATA-------TA-----CAGA------T-ATATACTA----AAATTGAAAATCGGAAATGACAAC---TC-A---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGTATATATAGGCTGCTATTAGTTTGATTACATAAAATATAAAAATTCTG--A-C-A---AAATCTTGTTTTTAAAATTCATTTTTT-T---AT-TTTGAATCAT------CAATAG--TTA-T--------TT-TGAAAGC-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------A----AAAAAACAATA----------C-ACCACT-------TT-AAATGTAAACAAAA-TGTACACAAAGAATA---A-A-----TA-TT---T--
gi|20 : GCGTGG--GAATGTTGTGCACTCGCCAGTATGCAAGCTTTTATTGTAACCC------------CT---AA-A----A-A-------------------------------------A-----C-AA------T-ATATACTA----ATGCTAAAAACT-AAAACGCCGTA---CC-T---C--T---C---TGTT-----CAT-GGGTGATTCGGAACATTCGGTTGTAAAGGCTGTCATTAGTTTGATTA---GACATGTA-------TG-TA-C-A---TAAT---GTCTTACAACGCCCCTTTTA-C---AT-TTTGAAACAT------GAATttgtgctggcggtaaataaaaagaataataaaaaaagaagcgcagcatctcagaaatgtcttggttttagtatctaaaaccc
gi|21 : ---AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAT------GAATAG--TTA-T--------TT-TGAAAGC-TTG-----GCTGA---T------GT-A-TAAAA-TATAC-TG---TAAA-C-------------------A----AAA-------AACCC------C-ACT----------TT-AAATGTATACAAAA-TGTACATAAAGAATA---Atct
gi|22 : cgCGAGCGAATACG------AA-GCCGTGCATTCGCGAATATGCGAGCTATTATGGTATCACG--TAAGAT---TA---AA-G----A-A------A--A--ATGATATA----T--T--------TA-----CAAA------C-ATAAACTATCCGACGTTGAAAACCGGAAATGAC------CC-T---C--T---A---TTTT-----CAT-GCGTAATTTGGAACACTCGGATACATAGCTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-ataacattgtgcccccaattgataacaagaagaatgaaaaaagaatcgcagagtctcggaaatgt
gi|23 : AATACGAGCGAATGCGCAGC-GAA-GCTGTGCATACGCGAGTATTCGAGCTCTTATGGTATCACG--TAAGAT---TCAAGAA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTAAAAAATGGAAATGAC------CC-TCTAC--T---G---TTTT-----CAT-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTT
gi|24 : AT------GAATA---TTA-T--------TT-C-AAATC-TCT-----TCTTA---TAATTACGT-A-CAAAA-TAAAG-TA---T-TT-T-------------------A----AAA-------A----------T-AC-----------TA-AAATATATAAAAAA-CGTACAT-TAGGATG---ATT-----TA-TT---T--ACTTCACAATTAA-TTTCTGCTATAGAGAAATTTACCAGATGAC
gi|25 : AGCGGATGTATGGC-AAA-GCTG-GCATTCGTGAGTATGCGAGCTCAGCTGGTAACATG--TTAGA----TT---AA-A----A-A------A--A--A-AATA-------------------A-----TAAA------CAATATAC
gi|26 : atagctGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGAagatata
gi|27 : gGTATGCGAGCTCACATGTTAACACC--TAGGATATATT---AA-ATACAA-A------AC-A--A-AATAAAACAAT--A--------TA-----CAGA------T-ATATACTA----ACGTTGGAAATCGGAAATGA
gi|28 : gTTCAATTACATAGAATATAAGAATTCT--TA-C
gi|29 : TATGGTATCACG--TAAGAT---T----AA-A----G-A------A--A--A-TATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---ataacttcgtgccgccgaaaaataagaataatagaaaagaatcgcagcgtctcggaaa
gi|3 : gcgaaCAAGCGAATATGCGACCGAA-GCCG-GTGTTCTCAAATATGTGAGCTC--------ACACG--TAGGAT---AT---AA-A----A-A------C--A--A-AACAAAA---T--TAAACAATATA-----CAGA------T-ATATACTA----A-------AATCGGAAATGACAAAGTCTC-T---C--T---G---TTTT-----CAT-GGGTGATTTGGAACACTCGGATATATAGGCTGCTATTAGTTCAATTACATAAA----AAGAATTTGA--A-TG----AAATCTTGTTTTACAAATTCACTTTTT-T---AT-TTTG--------------------------------------AAAGC-TTT-----GCTGA---TATTTATGT-A-TAAAA-TATAA-TA---TACT-C-------------------T----AAA-------A----------C-ACAAAATACCACTTT-AAATGTGAACAAAA-TGTTCACAAAGAATA---A-A-----TA-TT---TTCATGTCACCAATAAAT
gi|4 : agAGCGAATGTG--GC-GAA-GCTGTGCATTTGCAAGTATGCGAG------TGGTAACACG--TAAGAT---T----AA-A----A-A------A--AGGA-GAAAAA----A--A--------TA-----CAGG------T-ATATACTA----ACCTTGAAAACCGTAAATGAC------AAAT---A--A---G---TTTG-----CAT-GGGTGATTTAGAACACTCGGATATAAAGCCTGCTATTAATTCGAT--CTTAGGATATACGAATTCT--TA-CGA---AA-TCTTGTTTTACAAATTCACTTTTT-T---AT-TTTGAATCAG------GAATAT--TTA-T--------TTAC-AAAGC-TCT-----GCTGA---TATTCGTGT-A-TAACA-GATAC-TA---TACT-T-------------------A----AAA-------ACACAATACACC-AC-----------TT-AAATGTACACAAAA-TGTACATAAAGAATA---Aaagaataaaaaagaattgcagcgtctcggaaatgtcttggtttaagtatataaaacccagcggttttattattta
gi|5 : GCGAGCGAATACGAGCGAATGCACGGC-GAA-GCCGTGCATTCGCAAGTATGCGAGCTCTTATGGTATCACC--TAAGAT---TT---AA-A----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAAACGGAAATGAC------CC-T---C--T---GATTTTTT-----CAT-GCGTAATCTGAAACTCTCGGCTACGTAGGTTGTTTCTAATTTGATTGCATAAAATATAAGAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A--AAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TT-AATTATACACATAA-CGTACAT-TAGAATA---AAT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTACCAGATGACGTAGaaaaactgccaccgataaataacaagaatattaaaaaaataaccgaagcgtctcggaaatgtctgttgatactaaagctcag
gi|6 : aGAGCGAATGCACGGC-AAA-GCCGTGCATTCTCGAGTATGCAAGCTTTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATATTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--T---G---TTTTTTTTTCAT-GCGTAATTTAGACCACTCGGCTACGTAGGTTGTTTTTAATTTTATTACATAAAATACAGGAATTCTG-AA-CAA---AAATCCGAGTTTAAAAAGCCAC-TTTT-T---AT-CTTAAATCAT------GAATAG--TCA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAACA-TAAAA-CA---TAAT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CCTACAT-TATAATA---ATT-----TA-TT---T--ATTTCACAAATGAATTTCTACTATCGGGGAATTTACCAGATGACGTAG
gi|7 : GAATACGAGCGAATGAACGGC-GAA-GCCGTGCATTCGCGAGTATGAGAGCTCTTATGGTATCACG--TAAGAT---TA---AAGA----A-A------A--A--A-GATATA----T--T--------TA-----CAAA------C-ATATACTA----ACGTTGAAAACCGGAAATGAC------CC-T---C--TTCTG---TTTT-----CAT-GCGTAGTTTGGAATATTTGGCTATGTACGTTGTTTTTAATTTGATTACATAAAATATTGAAATTCTA-TA-CGA---AAATCCGGGTTTACAAAATAACTTTTT-T---AT-CCTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CCTTA---TAATTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-CGTACAT-TATAATA---ATT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTATAGGGAAATTTAC
gi|8 : A-A----A-A------A--T--A-AACA-A----T--A--------TA-----CAAA------T-ATATACTA----ACGTTGAAAATCGGAAATAACAAC---TC-T---C--C---A---GTTT-----CAT-GGGTGATTTGGGACACTCGGATATGTAGGTTGCTATTAGTTTGATTACATAAAATATAAGAATTCT--TT-TG----AAATCTTGTTTTACAAATTCATTTTTTAC---AT-TTTGATTCAT------CAATAG--TTA-T--------TT-TAAAAGT-TCT-----GCTGA---TATTCATGT-A-TAAAA-TATAT-TA---TACT-A-------------------T----AAA-------A----------C-ACAATGTACCACTTT-AAATGAAAACAAAA-TGTATACAAAGAATAAACATT--------TT---C--ATGCTGCTGATAAAT
gi|9 : agGCGAGCGAATACGAGCAAATGCGCGGC-GAA-------------------T-----CTCTTATAGTATCACG--TATGAT---TA---AA-A----AAA------A--A--A-GATATA----T--T--------TG-----CAAA------C-ATATACTA----ACGATTAAAACCGGAAATGAC------CC-T---C--T---G---TTTT-----CAA-GCGTAATTTGGAACACTCGGCTATGTAGGTTGTTTTTAATTTGATTACATAAAATATAGGAATTCTA-TA-CGA---AAATCCGAGTTTACAAAGCCACTTTTT-T---AT-CTTGAATCAT------GAATAG--TTA-T--------TT-C-AAATC-TCT-----CTTTA---TATTTACGT-A-CAAAA-TATAA-TA---TATT-T-------------------A----AAA-------A----------C-AC-----------TA-AAATATACACAAAA-TGTACAT-TATAATA---ATT-----TA-TT---T--ATTTCACAAATAAATTTCTGCTAAAGGGAAATTTACCAGATGAaacaagaataataaaaaaagaatcgcagcatctcggaaatgtatctaaattttagtatctaaaatgcagcggttttattat