lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 2222222 111111 1 1 1 11 1 111111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 1 1 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 11 3333333 1 1 3333333 11 888888 1 11 11 1111 11 1111 11 11111 1111111 111111111 222222222
lowQualScore : 4 4 5 2 5 2 7777777 0 0 4 0 999999 3 0 3 0 1 0 3 0 3 3 1 5 1 2 3 99 00 5 222222 2 5 3 0 4 5 1 3 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 1 0 222 3 2 4 8 3 22 1 6 444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 0 0 11 33 0 0 5555555 8 3 0 0 0 2222222 2 0 1 22 4 4 9 0 1 22 8 6 8 66 4 000000 0 11 55 11 1 8888 00 5 66 0 4 7777 3 6 4 8 2 11 44444 5 3 1 3 6 5 6666666 6 5 6 777 4 66 3 66 1 4 888888888 0 1 3 5 000000000
lowQualScore : . . . . . . ....... . . . . ...... . . . . . . . . . . . . . . . .. .. . ...... . . . . . . . . . ................................................................................. . . . ... . . . . . .. . . ... .............................................................................................. . . . .. .. . . ....... . . . . . ....... . . . .. . . . . . .. . . . .. . ...... . .. .. .. . .... .. . .. . . .... . . . . . .. ..... . . . . . . ....... . . . ... . .. . .. . . ......... . . . . .........
lowQualScore : 0 0 5 5 0 5 3333333 7 7 2 8 555555 2 8 0 6 4 6 0 6 5 3 8 5 7 1 7 77 99 3 888888 2 0 2 1 0 7 4 3 9 000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 7 555 5 7 0 3 0 88 4 0 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 5 88 55 8 2 0000000 3 0 6 0 0 5555555 5 8 4 00 0 0 6 8 4 22 0 6 2 00 6 888888 2 00 00 00 4 6666 88 0 22 8 6 0000 6 0 6 0 5 55 33333 0 0 7 5 7 8 6666666 2 0 3 222 4 11 4 11 9 4 777777777 8 6 9 0 222222222
consensus : AGAGGGNGGGGATTGNACGTCTGGANTGGGCCAGCCNGACCCCCACCCCT-CCGACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAACGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCTGATNGGGAGCATGAGGAGGCGTTGCCAAGCTGTNATTAACAGCAACGGGTCACATACTCGATATTAAN-CCCATACCAGT------TAGCTCCGTCAGCTTT-TTGGCAAATTTAGAAAANTCCC-TATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATATTGCAACTATAACGTGAA---TGTACTTGGATATTCTCGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAATGCGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTNATGTTAAAATTTTGCCGTAACCAAACTATGCCTATGAACTATGA-------ACAATTGCAATTTCCAATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTNACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTAAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--AGAAT--AAA--ACAAACAGGAGATCTACATTATAAATTATATA----TCATTAACCCAAANTTGTTAT-ATTTGTCTTAATCGCACATTCTCTTNAATTTCCGTTGATACATGGTG-----ATATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAATC-GAC--GATAAAA-GCACANATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTT-NNACNTTGAAACTTTTAC
Reference ( gi|2 ) : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACTGGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAA-CCCATAACAGT------TAGCTCCGTCAGTTTT-TTGGCAAATTTAAAAAAATCCC-TATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGA-------ACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--AGAAT--AAA--ATAAACAAGAGATCTACATTATAAACTATATA----TCATTAACCCAAATTTGCTAT-ATTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTG-----ATATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAATCAGAC--GATAAAA-GCACAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTT-ATACCTTCAAACTTTTAC
gi|1 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACTGGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAA-CCCATAACAGT------TAGCTCCGTCAGTTTT-TTGGCAAATTTAAAAAAATCCC-TATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGA-------ACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--AGAAT--AAA--ATAAACAAGAGATCTACATTATAAACTATATA----TCATTAACCCAAATTTGCTAT-ATTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTG-----ATATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAATCAGAC--GATAAAA-GCACAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTT-ATACCTTCAAACTTTTAC
gi|7 : AGAGGGTGGGGATTGAACG-CTGGAATGG-CCAGCCCGATCCCC--------CGACCTCAAGCCCATCGAGCATGTGGGGGATGAGCTGCAGCTTGGAATTTCAGCCCGTCAAGTCCAAGCAAGAAGTATCCA--------GG-AGCT---TGGTCCAAGAATGGAACAACATTTCACAA
gi|6 : cCTCCTGACCTCGATCCCATCGAGCTTGTATGGACTGAGTTGCAGCTTGGAATTTCAGCCCGTCCAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCATCAGGAACCTTATAAG-AACATGAGAAGGCGTTACCAAGCTGTTATTAACAGCAACGAGTCACATACTCGATATTAAA-CCCATACCAGT------TAGTTCCGTCAGCTTT-TTGGCAAATTTAGAAAAATCCT-TAGTTTATCAAAAATCTCTATTTTCAATGGgttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|10 : CAGCTTGGAATTACAGCCCGTCAAGTCCAGCCAAGAAGTATCCAGGAGC-TTGGTGCCATACTGGTCCAA-----------CATCCCACAAAGGACCATCAGGAACCTGATCGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAAT-TCCATA----T------CATCTCCGTCAGCTTT-TTGGCAAA-TTAAGAAAATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattacgtgaacatgtacttggatattctttgtgcttaggatactttgagcagtat
gi|18 : TGCTGGTCCAAGCATGGCACAACAACCCACAAAGAACCACCAGGAACCTGATTGGAAGCATGAGGAGGCATTGCCAAGCTGTAATTAACAGTAACAGGTCACATACTCGAT-ATAAATCCCATACCAGTTACATGTAGCTCCGTCAGCTTT-TTAGCAAATTTAGAAAATTCCC-TA-TTTATCAAAAATCTCTATTTTCAATGaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttagcaaactttgagaagtatatattaca
gi|4 : AAGGACCATCAGGAACCTCATAGGGAGCATGTGGAGGCATTGCCAAGTTGTTATTAACAGCAACAGGTCACATACTTGATATTTAT-CCCATACCGGT------AAG
gi|11 : gaccattattgaggcggctccgtgatggtctggggcgggatcagctgggatggacatacagacctcactgtcctttgactggggtacactaaatgcccagcggtatagagattctagatgcccaggtaagattgtatgttggtgcagtggctgatgggttcattctaatggacaataatacccatcctcatgcagcagggagtatatttagatgaaggggattgaacgtctggtatggccagcttgatcacccgatctcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGACCACCAGTAACCTGATGTGGAGCATGAGGAGGCGTTGCCAAGCTGTTGTTAACAGCAACGGGTCACATACCCGATATCAAT-CCCATACCAGT------TAGCTCCGTCAGCTTT-TTGGCAAATTT-AGAAATTCAC-T-TTTTA-CAAAAATCTCTATTTTCAATGGaaaattctctatcaagaatctctatttccaa
gi|7 : GTTGCCAAGTTGTAGTTAACAGCAACGGGTCACATACAAAATGTTAAT-CCCATACCAAT------TAGCTCCGTCAGCTTT-TTGGCAAA-TTAAGAAAATTCCATATTTTATCAAAAATTTCTATTTTCAATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaatattacaactataacgcaaaacatggtcttgaatattttttgtgcttagcaaactttgagcagtat
gi|14 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaa-CCCATATCAAT------TAGCCCCGTCAGTTTTTTTGGCAAGTTTCGAAAATTCCC-CATTTTATCAAAAATCTCTATTTTCAATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|12 : CCATACCAGT------TAGCTCCATCAGCTTT-ACAACAAATTTAGAAAATTCCC-TATTTTATCAAAAATCGCTATTTTCAATGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactatcgatgcttagcaaactttgagca
gi|12 : AACAATATTGCAACTATAACATAAAACACGTACTTGGACATTCTTGGTGCTTAGCAAACTATGAGCAtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcataacaatattgcaactataacataaaacacgtacttggacattcttggtgcttagcaaactatgagca
gi|11 : ccataccagttagctccatcagctttacaacaaatttagaaaattccctattttatcaaaaatcgctattttcaatggtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcatAATATTACAACTATAACGCAAAACATGGTCTTGAATATTTTTTGTGCTTAGCAAACTTTGAGCAGTAT
gi|6 : aggaccaccagtaacctgatgtggagcatgaggaggcgttgccaagctgttgttaacagcaacgggtcacatacccgatatcaatcccataccagttagctccgtcagctttttggcaaatttagaaattcactttttacaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccCTATTACGTGAACA-TGTACTTGGATATTCTTTGTGCTTAGGATACTTTGAGCAGTAT
gi|7 : ctcctgacctcgatcccatcgagcttgtatggactgagttgcagcttggaatttcagcccgtccagtccagtcaagaagtatccattaatgttggtaccttgctggtccaagaatggaacaacatcccacaaaggaccatcaggaaccttataagaacatgagaaggcgttaccaagctgttattaacagcaacgagtcacatactcgatattaaacccataccagttagttccgtcagctttttggcaaatttagaaaaatccttagtttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA---TGTACTTGGATATTATCAGTGCTTAGCAAACTTTGAGCAGTA
gi|25 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaagttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacA---TGCACTTGGCTATTCTTGGTGCTTAGCAAACTTTGAGCAGTAT
gi|14 : cTCGATGCTTAGCAAACTTTGAGCA
gi|10 : cccatatcaattagccccgtcagtttttttggcaagtttcgaaaattccccattttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactaGCTTAGCAAACTTTGAGAAGTATATAT--TACA
gi|8 : cagcttggaattacagcccgtcaagtccagccaagaagtatccaggagcttggtgccatactggtccaacatcccacaaaggaccatcaggaacctgatcgggagcatgaggaggcgttgccaagctgtaattaacagcaacgggtcacatactcgatattaattccatatcatctccgtcagctttttggcaaattaagaaaattcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTATGTATAAAACAGCTATTATGAAATATGAATGTTCACCATGCGGCAATACAAT-CGATG---CATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAGTCAAATGTTATGTTAAAATTTTACCGTAACCAAACTATGCCTATGAACTATGA-------ATATTTGCAATTTCCAATTTCTATACATTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTA
gi|13 : atgccagaaatacgaaaattaaactcaattgccatcacgaagataaggtactgtttatactgttaaaaaaatagtgagcagttttggtttttattttaaactttttcaacatctgaaacttacgctttgcttattgaattactacatGTATATATAGAACAGCTCTTATGAATAATGAATGTACTTCATGAAGTAAAGAAATGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACAAAT-GCCGAGTACCGTGTTATGTTAAAATATTGCTGTAACCAAACTATGCTGATGAATTGTG
gi|21 : tgcattgcttataaatgaactacacGTATATATAGAACAGCTCTTATGAATAATGAATGTTCTTCATGCGGTAAAGAAATGCGATG---ca
gi|3 : aagaacagatactttaaacactgttaaaaagctaatgagtaatttacgtgtttttttttacctttatgaacttctgtaaattacgcattgcttataaatgaactacgcATAAAACAGCTCTAATGAAATATGAATATTCACCATGCGGCAAAAAATT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATTACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACAAATCTATGCCTATGAACTATAA-------ACAATTGCAATTTCCCATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAAAGGTAACTATTAAAGTTCATCCACATTAA-CATTAAGCACATATCGCCTCGTCATTTATGTTTGAAATAATTTGATTA------TTAATCTTGTTGTGTAA--AGAATTCATA--ACAA-CAGGAGATCTACATAA-AAAGTATATA----TCATTAACTCAAAGTTGTTAT-ATTTGTCGTAATCGCACATTCTCTTGAATTTCCGT-GATACATAGTG-----ATATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGCAGG--------------C--GATTAAA-GCCCAAATTG--TGAA-CAGT--CACCATTCTTGC--AATGCGTTAT-AT------A--GCAAAATGCCGAAATTGTAATGTCCC-TTTTCATTGTT-ATGGGTTGAAACTTTTAC
gi|9 : GAATATAGTATAAAAGAGCACGACATGCACGTGATAATTTATGTAAGATACAAATGTATGTTATCAGTATGAAGTCTGCCTGTAACAGTAGATCATATAGAAACCGGTGGAAACCATTAT-GTTTGCCGATATATA-CATGAAACATATATCGCCCAATCATCCATGTTTAAAACAATTGAATTA------TTAACCTTGTTTCGAAA--A---T--TAATCATAAA-AACAG-------TTATAAATTATATAATTATCAGTACCCCAAACTAGTTGT-ATTTGTCTTAATCCCACTCTCTCTTCAATTTCCG-TGATACATGGTGAACTTATATACG----------AGGTAGTCCAATT--ACA-GA---AAGGGAGGTAAATATGACTAGA-AAAA-ACGCACACTT--TGAA-CAGT--CAACAGTTTTGC--TATGCGTTAT-AT------ATTGTTTAGTATTGAAACTTTTAtttttattttattacctcccttaaaacgttaatttaccatactttatcataa
gi|5 : aGATCACGCCATGCACGTGATTAAT-ATGCAAGAA-C-------TGTCACAAATATGACTTCTCAATGTAACAA--------------ATAAATGGGAACCATTAAAGCTCGTTTATA--AA-CATTAAGCACATAGCACCACATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGT-AAA--AGGAT--AAA---CAAA-AGGAGATCTACATTATATATTATGTA----TCATTAACCCAAAGTTGTTATAATTTGTCTTAATCGCATATTCTCTTGAACTTTCG-TGATACATAGTG-----ATATACGAACTTCGCCGAGATAGTCCAATTGAATATGAAGAAAGGGAAGTAAATCAGAC--GATAAAA-GCACAAATTG--TGAA-CAGT--CAATATTTTTGC--AATGCGTTAT-AT------A--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTT-ATACGTTCAAACTTTTACat
gi|17 : tatagtgtgatgataagagacagacaggtttTAAATTATTAATAAGTTAATGGCA-CCATCAAAGTTCGTCTATAAAAAACGTTTAGCACATATAGTCTCATCACTGATGTTT--AACATTTTAATTG------TTAATCTTGTTGTGAAACTAGTTT--ATA--A--AACAG------TACATTATTAATTATATG----TTATTAA-----ATT----AT-ATTTATCCTGATCACACATTCTCTTCTGTTTCCGTC-ATACATGTTG-----ATACATGtttttatttcattacttcccttgaaacgattttatt
gi|15 : TGTCTTAATCGCACATTCTCTTCAATTTTC-CTGGTACATGGTA-----ATAAACGAACTTCGTCGAGGTAGTCCAATTGCATACAATGAAAGGGA--------------GATAAAA-GCACA---------------C--CA------------AATGCGATATAAT------A--GTAAAATGCCGAAATTGTTACGCCCCTTTTCCATTGTT-TGGCTTTGAAAGTTTTAC
gi|16 : TACATGGTG-----ATATACAAACTTCTCTGAGGTAGTCCATTTGCATATAAAGAAAGGGAGGTAAATC-GAC--GATAAAAAGCACATATTT--TGAA-CAGT--CAACATTTTTGC--AGTGAGCTAT-AT------A--GTACAATGACGAAATTGTTACATCCC-TTCCCATTGTTGAAGCC--GAAACATTTACtttatattttattaactcccttgaaaatgtatgacttttaaacttccatacttcatatcaaggaatt
gi|22 : ttAGGTAGGTAAATTTGAC--GA-AAAA-GCACACATTT--TGAA-CAGT--CAGCATTTTTGC--AATGGGTTAT-AA------A--GTAAACTATCAAAATTGTTATGCCCC-TTTCTATTGTT-TAACGGTGAAACTTTTACtttttatttcattacctccgttaaactttacacttcatcataactaagga
gi|20 : AAATAAATCA----------AA-ATACAGATCG--T----------CAACATTTTAAC--AA--CGT------------------AAATATCGACATTGTTACGCCCC-GTTCCATTGTT-G-ACAATGGAAATTTTACattttattttattacctcccttgaaaattcattcatataaggct
gi|19 : aaagagagtcgactaatCAAATTGAATGAAATATTTACACCATTTTTTCCCAA--CATTAT-ATTCATTGATTGTAAA-CAGCGCAATTATTACGTCCC-TTTCCATTGTT-TGACTCCCAAACTTTAACttttttattttcattaacttggttaccaagttttattacatttaattgaaataagtaatgaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): CTTTCCATTGTTTAACTCCCAATACTTTGTATCTTATTAGTTCCCTCACAACTTTTCAGTGACTATCGTGTGTCTAACTACAGGGTCTTGTTCCGAGATAAATATAATACTATA
Unaligned ( gi|24 ): AGAAAATTCTCTATCAAGAATCTCTATTTCCAATTGTCATCTTACTCATGAGCTTAAAACAAACATAAAACACAAATAAATTCTAAAATTGTTGCCTACAT
Unaligned ( gi|26 ): ATATACCCAGTAACAGGTCAAAATAATGATACTCGC
Unaligned ( gi|27 ): GAACGCTGGAATGGCCAGCCCGATCCCCCGACCTCA
Alignments
lowQualScore : 1 2 33333333333 111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 1 111 666666666666666666666666666666666666666666666666666666666666666666666 2222 111 2222222 333333 11 1111 222 11
lowQualScore : 1 1 0 1 0 1 88888888888 1 999999 0 3 1 11 1 1 111111 4 1 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 777 2 9 111 999999999999999999999999999999999999999999999999999999999999999999999 1 8 1 1 1 3 0 1111 777 4 8 8 6666666 1 1 1 4 5 1 6 4 2 1 888888 99 6 99 11 6 4444 3 6 1 77 888 1 3 111 00 1 4 4 1 2 0 4 55 3 4 66 1 1
lowQualScore : . . . . . . ........... . ...... . . . .. . . ...... . . . ................................................................................. . ... . . ... ..................................................................... . . . . . . . .... ... . . . ....... . . . . . . . . . . ...... .. . .. .. . .... . . . .. ... . . ... .. . . . . . . . .. . . .. . .
lowQualScore : 0 0 6 0 0 0 11111111111 3 777777 8 3 0 77 0 0 555555 0 0 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 999 0 2 777 000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 4 4 2 8 2222 555 0 0 0 0000000 0 8 0 2 2 0 7 0 5 0 333333 22 7 22 00 7 2222 3 7 0 33 888 3 9 333 66 9 4 4 0 9 9 0 55 0 4 33 0 1
consensus : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAAC----AA---TTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTGTGAACAGTCAACATTTTTGCAATGCGTTAT-ATA--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
Reference ( family-1259 ) : AGAGGGNGGGGATTGNACGTCTGGANTGGGCCAGCCNGACCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAACGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCTGATNGGGAGCATGAGGAGGCGTTGCCAAGCTGTNATTAACAGCAACGGGTCACATACTCGATATTAANCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAANTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATATTGCAACTATAACGTGAA---TGTACTTGGATATTCTCGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAATGCGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTNATGTTAAAATTTTGCCGTAACCAAACTATGCCTATGAACTATGAAC----AA---TTGCAATTTCCAATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTNACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTAAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTNAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CANATTGTGAACAGTCAACATTTTTGCAATGCGTTAT-ATA--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTTNNACNTTGAAACTTTTAC
gi|1 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAAC----AA---TTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTGTGAACAGTCAACATTTTTGCAATGCGTTAT-ATA--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTAC
gi|10 : CAGCTTGGAATTACAGCCCGTCAAGTCCAGCCAAGAAGTATCCAGGAGC-TTGGTGCCATACTGGTCCAA-----------CATCCCACAAAGGACCATCAGGAACCTGATCGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATTCCATATCA-T---------CTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTC
gi|10 : GCTTAGCAAACTTTGAGAAGTATATATaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttagcaaactttgagaagtatatattaca
gi|11 : cagcttggaattacagcccgtcaagtccagccaagaagtatccaggagcttggtgccatactggtccaacatcccacaaaggaccatcaggaacctgatcgggagcatgaggaggcgttgccaagctgtaattaacagcaacgggtcacatactcgatattaattccatatcatctccgtcagctttttggcaaattaagaaaattcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGACCACCAGTAACCTGATGTGGAGCATGAGGAGGCGTTGCCAAGCTGTTGTTAACAGCAACGGGTCACATACCCGATATCAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAG-AAATTCACT-TTTTA-CAAAAATCTCTATTTTCAATGGtaca
gi|11 : CAATATTACAACTATAACGCAAAACATGGTCTTGAATATTTTTTGTGCTTAGCAAACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaatattacaactataacgcaaaacatggtcttgaatattttttgtgcttagcaaactttgagcagtat
gi|12 : aggaccaccagtaacctgatgtggagcatgaggaggcgttgccaagctgttgttaacagcaacgggtcacatacccgatatcaatcccataccagttagctccgtcagctttttggcaaatttagaaattcactttttacaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcCCATACCAGT------TAGCTCCATCAGCTTTAC-AACAAATTTAGAAAATTCCCTATTTTATCAAAAATCGCTATTTTCAATGG
gi|12 : AACAATATTGCAACTATAACATAAAACACGTACTTGGACATTCTTGGTGCTTAGCAAACTATGAGCAtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcataacaatattgcaactataacataaaacacgtacttggacattcttggtgcttagcaaactatgagca
gi|13 : ccataccagttagctccatcagctttacaacaaatttagaaaattccctattttatcaaaaatcgctattttcaatggtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcatGTATATATAGAACAGCTCTTATGAATAATGAATGTACTTCATGAAGTAAAGAAATGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACAAAT-GCCGAGTACCGTGTTATGTTAAAATATTGCTGTAACCAAACTATGCTGATGAATTGTG
gi|14 : tgcattgcttataaatgaactacacCCCATATCAAT------TAGCCCCGTCAGTTTTTTTGGCAAGTTTCGAAAATTCCCCATTTTATCAAAAATCTCTATTTTCAATGGca
gi|14 : TACTATCGATGCTTAGCAAACTTTGAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactatcgatgcttagcaaactttgagca
gi|15 : cccatatcaattagccccgtcagtttttttggcaagtttcgaaaattccccattttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacTGTCTTAATCGCACATTCTCTTCAATTTTC-CTGGTACATGGTAA---TAAACGAACTTCGTCGAGGTAGTCCAATTGCATACAATGAAAGGGAG---------------ATAAAA-GCA-CAC--------CA--------------AATGCGATATAATA--GTAAAATGCCGAAATTGTTACGCCCCTTTTCCATTGTTTGGCTTTGAAAGTTTTAC
gi|16 : TACATGGTGA---TATACAAACTTCTCTGAGGTAGTCCATTTGCATATAAAGAAAGGGAGGTAAAT-C-GAC--GATAAAAAGCA-CATATTTTGAACAGTCAACATTTTTGCAGTGAGCTAT-ATA--GTACAATGACGAAATTGTTACATCCC-TTCCCATTGTTGAA-GCCGAAACATTTACtttatattttattaactcccttgaaaatgtatgacttttaaacttccatacttcatatcaaggaatt
gi|17 : ttTAAATTATTAATAAGTTAATGGCA-CCATCAAAGTTCGTCTATAAAAAACGTTTAGCACATATAGTCTCATCACTGATGTTT--AACATTTTAATTG------TTAATCTTGTTGTGAAACTA-GTTT--ATAA--AACAG------TACATTATTAATTATA----TGTTATTAA---------ATTATA-TTTATCCTGATCACACATTCTCTTCTGTTTCCGTC-ATACATGTTGA---TACATGtttttatttcattacctccgttaaactttacacttcatcataactaagga
gi|18 : TGCTGGTCCAAGCATGGCACAACAACCCACAAAGAACCACCAGGAACCTGATTGGAAGCATGAGGAGGCATTGCCAAGCTGTAATTAACAGTAACAGGTCACATACTCGATATAAATCCCATACCAGTTACATGTAGCTCCGTCAGCTTTTT-AGCAAATTTAGAAAATTCCCTA-TTTATCAAAAATCTCTATTTTCAATG
gi|19 : CAACATTAT----ATTCATTG--ATT--GTAAA-CAGCGCAATTATTACGTCCC-TTTCCATTGTTTGACTCCCAAACTTTAAC
gi|2 : caaattgaatgaaatatttacaccattttttccAGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAAC----AA---TTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTGTGAACAGTCAACATTTTTGCAATGCGTTAT-ATA--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTACtacttatttaattatctcccttttaacttttgattatcgtgtctaaccacagagcatgtcccgaaatcatatataaaacata
gi|20 : AAAGAGAG-----T-C-GACT-AATAAAT-AAATCAAAATACAGATCGTCAACATTTTAACAA--CGT------------AAATATCGACATTGTTACGCCCC-GTTCCATTGTT-GACAATGGAAATTTTAC
gi|21 : GTATATATAGAACAGCTCTTATGAATAATGAATGTTCTTCATGCGGTAAAGAAATGCGATG---ttttttattttcattaacttggttaccaagttttattacatttaattgaaataagtaatgaa
gi|22 : aagaacagatactttaaacactgttaaaaagctaatgagtaatttacgtgtttttttttacctttatgaacttctgtaaattacgcattgcttataaatgaactacgcAGGTAGGTAAAT-TTGAC--GA-AAAA-GCA-CACATTTTGAACAGTCAGCATTTTTGCAATGGGTTAT-AAA--GTAAACTATCAAAATTGTTATGCCCC-TTTCTATTGTTTAACGGTGAAACTTTTAC
gi|24 : AGAAAATTCTCTAT-----CAAGAATCTCTATTTCCAATattttattttattacctcccttgaaaattcattcatataaggct
gi|25 : A---TGCACTTGGCTATTCTTGGTGCTTAGCAAACTTTGAGCAGTATtgtcatcttactcatgagcttaaaacaaacataaaacacaaataaattctaaaattgttgcctacat
gi|27 : cGAACG-CTGGAATGG-CCAGCCCGATCCC--------CC-GACCTC
gi|3 : ATAAAACAGCTCTAATGAAATATGAATATTCACCATGCGGCAAAAAA-TTCGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATTACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACAAATCTATGCCTATGAACTATAAAC----AA---TTGCAATTTCCCATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAAAGGTAACTATTAAAGTTCATCCACATTAA-CATTAAGCACATATCGCCTCGTCATTTATGTTTGAAATAATTTGATTA------TTAATCTTGTTGTGTAA--A-GAATTCATAAC-AACAGGAGATCTACA-TAAAAAGTATA----TATCATTAACTCAAAGTTGTTATA-TTTGTCGTAATCGCACATTCTCTTGAATTTCCG-TGATACATAGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGCA---------------GGC--GATTAAA-GCC-CAAATTGTGAACAGTCACCATTCTTGCAATGCGTTAT-ATA--GCAAAATGCCGAAATTGTAATGTCCC-TTTTCATTGTTATGGGTTGAAACTTTTACa
gi|4 : AGATGAAGGGGATTGAACGTCTGGTATGG-CCAGCTTGATC---ACCC------GATCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AAGGACCATCAGGAACCTCATAGGGAGCATGTGGAGGCATTGCCAAGTTGTTATTAACAGCAACAGGTCACATACTTGATATTTATCCCATACCGGT------AAG---------------------------AAAATTCTC-----TATCAAGAATCTCTATTTCCAAtttttattttattacctcccttaaaacgttaatttaccatactttatcataa
gi|5 : gaccattattgaggcggctccgtgatggtctggggcgggatcagctgggatggacatacagacctcactgtcctttgactggggtacactaaatgcccagcggtatagagattctagatgcccaggtaagattgtatgttggtgcagtggctgatgggttcattctaatggacaataatacccatcctcatgcagcagggagtatatttGATCACGCCATGCACGTGATTAAT-ATGCAAGAA-C-------TGTCACAAATATGACTTCTCAATGTAACAA--------------ATAAATGGGAACCATTAAAGCTCGTT--TATAAA-CATTAAGCACATAGCACCACATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGT-AAA--A-GGAT--AAA-CAAA-AGGAGATCTACATTATATATTATG----TATCATTAACCCAAAGTTGTTATAATTTGTCTTAATCGCATATTCTCTTGAACTTTCGT-GATACATAGTGA---TATACGAACTTCGCCGAGATAGTCCAATTGAATATGAAGAAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTGTGAACAGTCAATATTTTTGCAATGCGTTAT-ATA--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTTATACGTTCAAACTTTTAC
gi|6 : tatagtgtgatgataagagacagacaggtttCT-CCTGACCTCGATCCCATCGAGCTTGTATGGACTGAGTTGCAGCTTGGAATTTCAGCCCGTCCAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCATCAGGAACCTTATA-AGAACATGAGAAGGCGTTACCAAGCTGTTATTAACAGCAACGAGTCACATACTCGATATTAAACCCATACCAGT------TAGTTCCGTCAGCTTTTT-GGCAAATTTAGAAAAATCCTTAGTTTATCAAAAATCTCTATTTTCAATGGtttttatttcattacttcccttgaaacgattttatt
gi|6 : CTATTACGTGAACA-TGTACTTGGATATTCTTTGTGCTTAGGATACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattacgtgaacatgtacttggatattctttgtgcttaggatactttgagcagtat
gi|7 : ctcctgacctcgatcccatcgagcttgtatggactgagttgcagcttggaatttcagcccgtccagtccagtcaagaagtatccattaatgttggtaccttgctggtccaagaatggaacaacatcccacaaaggaccatcaggaaccttataagaacatgagaaggcgttaccaagctgttattaacagcaacgagtcacatactcgatattaaacccataccagttagttccgtcagctttttggcaaatttagaaaaatccttagtttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGGTGGGGATTGAACG-CTGGAATGG-CCAGCCCGATCCCC--------C-GACCTCAAGCCCATCGAGCATGTGGGGGATGAGCTGCAGCTTGGAATTTCAGCCCGTCAAGTCCAAGCAAGAAGTATCCA--------GG-AGCT---TGGTCCAAGAATGGAACAACATTTCACAA
gi|7 : cGTTGCCAAGTTGTAGTTAACAGCAACGGGTCACATACAAAATGTTAATCCCATACCAAT------TAGCTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTCCATATTTTATCAAAAATTTCTATTTTCAATGGgttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|7 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaaA---TGTACTTGGATATTATCAGTGCTTAGCAAACTTTGAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|8 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaagttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacGTATGTATAAAACAGCTATTATGAAATATGAATGTTCACCATGCGGCAATACAAT-CGATG---CATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAGTCAAATGTTATGTTAAAATTTTACCGTAACCAAACTATGCCTATG-------AACTATGAATATTTGCAATTTCCAATTTCTATACATTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTA
gi|9 : atgccagaaatacgaaaattaaactcaattgccatcacgaagataaggtactgtttatactgttaaaaaaatagtgagcagttttggtttttattttaaactttttcaacatctgaaacttacgctttgcttattgaattactacatGAATATAGTATAAAAGAGCACGACATGCACGTGATAATTTATGTAAGATACAAATGTATGTTATCAGTATGAAGTCTGCCTGTAACAGTAGATCATATAGAAACCGGTGGAAACCATTAT-GTTTGCCGATATATA-CATGAAACATATATCGCCCAATCATCCATGTTTAAAACAATTGAATTA------TTAACCTTGTTTCGAAA--ATTAAT--CATAAAAACAG----------TTATAAATTATATAATTATCAGTACCCCAAACTAGTTGTA-TTTGTCTTAATCCCACTCTCTCTTCAATTTCCG-TGATACATGGTGAACTTATATA--------CGAGGTAGTCCAATT--AC----AGAAAGGGAGGTAAATAT-GACTAGA-AAAA-ACG-CACACTTTGAACAGTCAACAGTTTTGCTATGCGTTAT-ATATTGTTTAGTATTGAAACTTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTTTCCATTGTTTAACTCCCAATACTTTGTATCTTATTAGTTCCCTCACAACTTTTCAGTGACTATCGTGTGTCTAACTACAGGGTCTTGTTCCGAGATAAATATAATACTATA
Unaligned ( gi|26 ): ATATACCCAGTAACAGGTCAAAATAATGATACTCGC
Alignments
lowQualScore : 1 2 33333333333 111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 1 111 666666666666666666666666666666666666666666666666666666666666666666666 2222222 333333 11 1111 222 11 111111111
lowQualScore : 1 0 0 0 3 88888888888 1 55 4 0 3 1 1 11 0 0 111111 4 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 777 3 111 999999999999999999999999999999999999999999999999999999999999999999999 1 8 1 1 1 1 1 8 8 6666666 1 1 4 5 1 6 1 2 1 888888 99 6 99 11 6 4444 3 6 0 77 888 1 3 111 00 1 4 4 3 777 4 55 2 55 0 4 555555555 0 4 66 2 1
lowQualScore : . . . . . ........... . .. . . . . . .. . . ...... . . ................................................................................. . ... . ... ..................................................................... . . . . . . . . . ....... . . . . . . . . . ...... .. . .. .. . .... . . . .. ... . . ... .. . . . . ... . .. . .. . . ......... . . .. . .
lowQualScore : 4 6 6 0 2 11111111111 3 55 3 8 3 0 4 00 8 8 555555 0 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 999 3 777 000000000000000000000000000000000000000000000000000000000000000000000 0 0 4 4 4 0 0 0 0 0000000 8 0 2 2 0 7 0 5 0 333333 22 7 22 00 7 2222 3 7 7 33 888 3 9 333 66 9 4 0 3 111 0 55 2 55 8 0 999999999 5 4 33 9 1
consensus : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
Reference ( family-1259 ) : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
gi|1 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTAC
gi|10 : CAGCTTGGAATTACAGCCCGTCAAGTCCAGCCAAGAAGTATCCAGGAGC-TTGGTGCCATACTGGTCCAA-----------CATCCCACAAAGGACCATCAGGAACCTGATCGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATTCCATATCA-T---------CTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTC
gi|10 : GCTTAGCAAACTTTGAGAAGTATATATaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttagcaaactttgagaagtatatattaca
gi|11 : cagcttggaattacagcccgtcaagtccagccaagaagtatccaggagcttggtgccatactggtccaacatcccacaaaggaccatcaggaacctgatcgggagcatgaggaggcgttgccaagctgtaattaacagcaacgggtcacatactcgatattaattccatatcatctccgtcagctttttggcaaattaagaaaattcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGACCACCAGTAACCTGATGTGGAGCATGAGGAGGCGTTGCCAAGCTGTTGTTAACAGCAACGGGTCACATACCCGATATCAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAG-AAATTCACT-TTTTA-CAAAAATCTCTATTTTCAATGGtaca
gi|11 : CAATATTACAACTATAACGCAAAACATGGTCTTGAATATTTTTTGTGCTTAGCAAACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaatattacaactataacgcaaaacatggtcttgaatattttttgtgcttagcaaactttgagcagtat
gi|12 : aggaccaccagtaacctgatgtggagcatgaggaggcgttgccaagctgttgttaacagcaacgggtcacatacccgatatcaatcccataccagttagctccgtcagctttttggcaaatttagaaattcactttttacaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcCCATACCAGT------TAGCTCCATCAGCTTTAC-AACAAATTTAGAAAATTCCCTATTTTATCAAAAATCGCTATTTTCAATGG
gi|12 : AACAATATTGCAACTATAACATAAAACACGTACTTGGACATTCTTGGTGCTTAGCAAACTATGAGCAtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcataacaatattgcaactataacataaaacacgtacttggacattcttggtgcttagcaaactatgagca
gi|13 : ccataccagttagctccatcagctttacaacaaatttagaaaattccctattttatcaaaaatcgctattttcaatggtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcatGTATATATAGAACAGCTCTTATGAATAATGAATGTACTTCATGAAGTAAAGAAATGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACAAAT-GCCGAGTACCGTGTTATGTTAAAATATTGCTGTAACCAAACTATGCTGATGAATTGTG
gi|14 : tgcattgcttataaatgaactacacCCCATATCAAT------TAGCCCCGTCAGTTTTTTTGGCAAGTTTCGAAAATTCCCCATTTTATCAAAAATCTCTATTTTCAATGGca
gi|14 : TACTATCGATGCTTAGCAAACTTTGAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactatcgatgcttagcaaactttgagca
gi|15 : cccatatcaattagccccgtcagtttttttggcaagtttcgaaaattccccattttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacTGTCTTAATCGCACATTCTCTTCAATTTTC-CTGGTACATGGTAA---TAAACGAACTTCGTCGAGGTAGTCCAATTGCATACAATGAAAGGGAG---------------ATAAAA-GCA-CA---------------C--CA------------AATGCGATATAAT------A--GTAAAATGCCGAAATTGTTACGCCCCTTTTCCATTGTTTGGCTTTGAAAGTTTTAC
gi|16 : TACATGGTGA---TATACAAACTTCTCTGAGGTAGTCCATTTGCATATAAAGAAAGGGAGGTAAAT-C-GAC--GATAAAAAGCA-CATATTT--TGAA-CAGT--CAACATTTTTGC--AGTGAGCTAT-AT------A--GTACAATGACGAAATTGTTACATCCC-TTCCCATTGTTGAA-GCCGAAACATTTACtttatattttattaactcccttgaaaatgtatgacttttaaacttccatacttcatatcaaggaatt
gi|17 : ttTAAATTATTAATAAGTTAATGGCA-CCATCAAAGTTCGTCTATAAAAAACGTTTAGCACATATAGTCTCATCACTGATGTTT--AACATTTTAATTG------TTAATCTTGTTGTGAAACTA-GTTT--ATAA--AACAG------TACATTATTAATTATA----TGTTATTAA---------ATTATA-TTTATCCTGATCACACATTCTCTTCTGTTTCCGTC-ATACATGTTGA---TACATGtttttatttcattacctccgttaaactttacacttcatcataactaagga
gi|18 : TGCTGGTCCAAGCATGGCACAACAACCCACAAAGAACCACCAGGAACCTGATTGGAAGCATGAGGAGGCATTGCCAAGCTGTAATTAACAGTAACAGGTCACATACTCGATATAAATCCCATACCAGTTACATGTAGCTCCGTCAGCTTTTT-AGCAAATTTAGAAAATTCCCTA-TTTATCAAAAATCTCTATTTTCAATG
gi|19 : -CAAATTGAATGAAATATTTACACCATTTTTTCCCAA--CATTAT-ATTCATTGATTGTAAA-CAGCGCAATTATTACGTCCC-TTTCCATTGTTTGACTCCCAAACTTTAAC
gi|2 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTACtacttatttaattatctcccttttaacttttgattatcgtgtctaaccacagagcatgtcccgaaatcatatataaaacata
gi|20 : AAAGAGAG-----T-C-GACT-AATAAAT-AAATCAAAATA--CAGA-TCGT--CAACATTTTAAC--AA--CGT------------------AAATATCGACATTGTTACGCCCC-GTTCCATTGTT-GACAATGGAAATTTTAC
gi|21 : GTATATATAGAACAGCTCTTATGAATAATGAATGTTCTTCATGCGGTAAAGAAATGCGATG---ttttttattttcattaacttggttaccaagttttattacatttaattgaaataagtaatgaa
gi|22 : aagaacagatactttaaacactgttaaaaagctaatgagtaatttacgtgtttttttttacctttatgaacttctgtaaattacgcattgcttataaatgaactacgcAGGTAGGTAAAT-TTGAC--GA-AAAA-GCA-CACATTT--TGAA-CAGT--CAGCATTTTTGC--AATGGGTTAT-AA------A--GTAAACTATCAAAATTGTTATGCCCC-TTTCTATTGTTTAACGGTGAAACTTTTAC
gi|24 : AGAAAATTCTCTAT-----CAAGAATCTCTATTTCCAATattttattttattacctcccttgaaaattcattcatataaggct
gi|25 : A---TGCACTTGGCTATTCTTGGTGCTTAGCAAACTTTGAGCAGTATtgtcatcttactcatgagcttaaaacaaacataaaacacaaataaattctaaaattgttgcctacat
gi|27 : cGAACG-CTGGAATGG-CCAGCCCGATCCC--------CC-GACCTC
gi|3 : ATAAAACAGCTCTAATGAAATATGAATATTCACCATGCGGCAAAAAATT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATTACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACAAATCTATGCCTATGAACTATAAACAATTGCAATTTCCCATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAAAGGTAACTATTAAAGTTCATCCACATTAA-CATTAAGCACATATCGCCTCGTCATTTATGTTTGAAATAATTTGATTA------TTAATCTTGTTGTGTAA--A-GAATTCATAAC-AACAGGAGATCTACA-TAAAAAGTATA----TATCATTAACTCAAAGTTGTTATA-TTTGTCGTAATCGCACATTCTCTTGAATTTCCG-TGATACATAGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGCA---------------GGC--GATTAAA-GCC-CAAATTG--TGAA-CAGT--CACCATTCTTGC--AATGCGTTAT-AT------A--GCAAAATGCCGAAATTGTAATGTCCC-TTTTCATTGTTATGGGTTGAAACTTTTACa
gi|4 : AGATGAAGGGGATTGAACGTCTGGTATGG-CCAGCTTGATC---ACCC------GATCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AAGGACCATCAGGAACCTCATAGGGAGCATGTGGAGGCATTGCCAAGTTGTTATTAACAGCAACAGGTCACATACTTGATATTTATCCCATACCGGT------AAG---------------------------AAAATTCTC-----TATCAAGAATCTCTATTTCCAAtttttattttattacctcccttaaaacgttaatttaccatactttatcataa
gi|5 : gaccattattgaggcggctccgtgatggtctggggcgggatcagctgggatggacatacagacctcactgtcctttgactggggtacactaaatgcccagcggtatagagattctagatgcccaggtaagattgtatgttggtgcagtggctgatgggttcattctaatggacaataatacccatcctcatgcagcagggagtatatttGATCACGCCATGCACGTGATTAAT-ATGCAAGAA-C-------TGTCACAAATATGACTTCTCAATGTAACAA--------------ATAAATGGGAACCATTAAAGCTCGTT--TATAAA-CATTAAGCACATAGCACCACATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGT-AAA--A-GGAT--AAA-CAAA-AGGAGATCTACATTATATATTATG----TATCATTAACCCAAAGTTGTTATAATTTGTCTTAATCGCATATTCTCTTGAACTTTCGT-GATACATAGTGA---TATACGAACTTCGCCGAGATAGTCCAATTGAATATGAAGAAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAATATTTTTGC--AATGCGTTAT-AT------A--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTTATACGTTCAAACTTTTAC
gi|6 : tatagtgtgatgataagagacagacaggtttCT-CCTGACCTCGATCCCATCGAGCTTGTATGGACTGAGTTGCAGCTTGGAATTTCAGCCCGTCCAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCATCAGGAACCTTATA-AGAACATGAGAAGGCGTTACCAAGCTGTTATTAACAGCAACGAGTCACATACTCGATATTAAACCCATACCAGT------TAGTTCCGTCAGCTTTTT-GGCAAATTTAGAAAAATCCTTAGTTTATCAAAAATCTCTATTTTCAATGGtttttatttcattacttcccttgaaacgattttatt
gi|6 : CTATTACGTGAACA-TGTACTTGGATATTCTTTGTGCTTAGGATACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattacgtgaacatgtacttggatattctttgtgcttaggatactttgagcagtat
gi|7 : ctcctgacctcgatcccatcgagcttgtatggactgagttgcagcttggaatttcagcccgtccagtccagtcaagaagtatccattaatgttggtaccttgctggtccaagaatggaacaacatcccacaaaggaccatcaggaaccttataagaacatgagaaggcgttaccaagctgttattaacagcaacgagtcacatactcgatattaaacccataccagttagttccgtcagctttttggcaaatttagaaaaatccttagtttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGGTGGGGATTGAACG-CTGGAATGG-CCAGCCCGATCCCC--------C-GACCTCAAGCCCATCGAGCATGTGGGGGATGAGCTGCAGCTTGGAATTTCAGCCCGTCAAGTCCAAGCAAGAAGTATCCA--------GG-AGCT---TGGTCCAAGAATGGAACAACATTTCACAA
gi|7 : cGTTGCCAAGTTGTAGTTAACAGCAACGGGTCACATACAAAATGTTAATCCCATACCAAT------TAGCTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTCCATATTTTATCAAAAATTTCTATTTTCAATGGgttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|7 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaaA---TGTACTTGGATATTATCAGTGCTTAGCAAACTTTGAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|8 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaagttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacGTATGTATAAAACAGCTATTATGAAATATGAATGTTCACCATGCGGCAATACAAT-CGATG---CATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAGTCAAATGTTATGTTAAAATTTTACCGTAACCAAACTATGCCTATGAACTATGAATATTTGCAATTTCCAATTTCTATACATTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTA
gi|9 : atgccagaaatacgaaaattaaactcaattgccatcacgaagataaggtactgtttatactgttaaaaaaatagtgagcagttttggtttttattttaaactttttcaacatctgaaacttacgctttgcttattgaattactacatGAATATAGTATAAAAGAGCACGACATGCACGTGATAATTTATGTAAGATACAAATGTATGTTATCAGTATGAAGTCTGCCTGTAACAGTAGATCATATAGAAACCGGTGGAAACCATTAT-GTTTGCCGATATATA-CATGAAACATATATCGCCCAATCATCCATGTTTAAAACAATTGAATTA------TTAACCTTGTTTCGAAA--ATTAAT--CATAAAAACAG----------TTATAAATTATATAATTATCAGTACCCCAAACTAGTTGTA-TTTGTCTTAATCCCACTCTCTCTTCAATTTCCG-TGATACATGGTGAACTTATATA--------CGAGGTAGTCCAATT--AC----AGAAAGGGAGGTAAATAT-GACTAGA-AAAA-ACG-CACACTT--TGAA-CAGT--CAACAGTTTTGC--TATGCGTTAT-AT------ATTGTTTAGTATTGAAACTTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTTTCCATTGTTTAACTCCCAATACTTTGTATCTTATTAGTTCCCTCACAACTTTTCAGTGACTATCGTGTGTCTAACTACAGGGTCTTGTTCCGAGATAAATATAATACTATA
Unaligned ( gi|26 ): ATATACCCAGTAACAGGTCAAAATAATGATACTCGC
Alignments
lowQualScore : 1 2 33333333333 111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 1 111 666666666666666666666666666666666666666666666666666666666666666666666 2222222 333333 11 1111 222 11 111111111
lowQualScore : 1 0 0 0 3 88888888888 1 55 4 0 3 1 1 11 0 0 111111 4 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 777 3 111 999999999999999999999999999999999999999999999999999999999999999999999 1 8 1 1 1 1 1 8 8 6666666 1 1 4 5 1 6 1 2 1 888888 99 6 99 11 6 4444 3 6 0 77 888 1 3 111 00 1 4 4 3 777 4 55 2 55 0 4 555555555 0 4 66 2 1
lowQualScore : . . . . . ........... . .. . . . . . .. . . ...... . . ................................................................................. . ... . ... ..................................................................... . . . . . . . . . ....... . . . . . . . . . ...... .. . .. .. . .... . . . .. ... . . ... .. . . . . ... . .. . .. . . ......... . . .. . .
lowQualScore : 4 6 6 0 2 11111111111 3 55 3 8 3 0 4 00 8 8 555555 0 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 999 3 777 000000000000000000000000000000000000000000000000000000000000000000000 0 0 4 4 4 0 0 0 0 0000000 8 0 2 2 0 7 0 5 0 333333 22 7 22 00 7 2222 3 7 7 33 888 3 9 333 66 9 4 0 3 111 0 55 2 55 8 0 999999999 5 4 33 9 1
consensus : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
Reference ( family-1259 ) : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
gi|1 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTAC
gi|10 : CAGCTTGGAATTACAGCCCGTCAAGTCCAGCCAAGAAGTATCCAGGAGC-TTGGTGCCATACTGGTCCAA-----------CATCCCACAAAGGACCATCAGGAACCTGATCGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATTCCATATCA-T---------CTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTC
gi|10 : GCTTAGCAAACTTTGAGAAGTATATATaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttagcaaactttgagaagtatatattaca
gi|11 : cagcttggaattacagcccgtcaagtccagccaagaagtatccaggagcttggtgccatactggtccaacatcccacaaaggaccatcaggaacctgatcgggagcatgaggaggcgttgccaagctgtaattaacagcaacgggtcacatactcgatattaattccatatcatctccgtcagctttttggcaaattaagaaaattcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGACCACCAGTAACCTGATGTGGAGCATGAGGAGGCGTTGCCAAGCTGTTGTTAACAGCAACGGGTCACATACCCGATATCAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAG-AAATTCACT-TTTTA-CAAAAATCTCTATTTTCAATGGtaca
gi|11 : CAATATTACAACTATAACGCAAAACATGGTCTTGAATATTTTTTGTGCTTAGCAAACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaatattacaactataacgcaaaacatggtcttgaatattttttgtgcttagcaaactttgagcagtat
gi|12 : aggaccaccagtaacctgatgtggagcatgaggaggcgttgccaagctgttgttaacagcaacgggtcacatacccgatatcaatcccataccagttagctccgtcagctttttggcaaatttagaaattcactttttacaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcCCATACCAGT------TAGCTCCATCAGCTTTAC-AACAAATTTAGAAAATTCCCTATTTTATCAAAAATCGCTATTTTCAATGG
gi|12 : AACAATATTGCAACTATAACATAAAACACGTACTTGGACATTCTTGGTGCTTAGCAAACTATGAGCAtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcataacaatattgcaactataacataaaacacgtacttggacattcttggtgcttagcaaactatgagca
gi|13 : ccataccagttagctccatcagctttacaacaaatttagaaaattccctattttatcaaaaatcgctattttcaatggtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcatGTATATATAGAACAGCTCTTATGAATAATGAATGTACTTCATGAAGTAAAGAAATGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACAAAT-GCCGAGTACCGTGTTATGTTAAAATATTGCTGTAACCAAACTATGCTGATGAATTGTG
gi|14 : tgcattgcttataaatgaactacacCCCATATCAAT------TAGCCCCGTCAGTTTTTTTGGCAAGTTTCGAAAATTCCCCATTTTATCAAAAATCTCTATTTTCAATGGca
gi|14 : TACTATCGATGCTTAGCAAACTTTGAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactatcgatgcttagcaaactttgagca
gi|15 : cccatatcaattagccccgtcagtttttttggcaagtttcgaaaattccccattttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacTGTCTTAATCGCACATTCTCTTCAATTTTC-CTGGTACATGGTAA---TAAACGAACTTCGTCGAGGTAGTCCAATTGCATACAATGAAAGGGAG---------------ATAAAA-GCA-CA---------------C--CA------------AATGCGATATAAT------A--GTAAAATGCCGAAATTGTTACGCCCCTTTTCCATTGTTTGGCTTTGAAAGTTTTAC
gi|16 : TACATGGTGA---TATACAAACTTCTCTGAGGTAGTCCATTTGCATATAAAGAAAGGGAGGTAAAT-C-GAC--GATAAAAAGCA-CATATTT--TGAA-CAGT--CAACATTTTTGC--AGTGAGCTAT-AT------A--GTACAATGACGAAATTGTTACATCCC-TTCCCATTGTTGAA-GCCGAAACATTTACtttatattttattaactcccttgaaaatgtatgacttttaaacttccatacttcatatcaaggaatt
gi|17 : ttTAAATTATTAATAAGTTAATGGCA-CCATCAAAGTTCGTCTATAAAAAACGTTTAGCACATATAGTCTCATCACTGATGTTT--AACATTTTAATTG------TTAATCTTGTTGTGAAACTA-GTTT--ATAA--AACAG------TACATTATTAATTATA----TGTTATTAA---------ATTATA-TTTATCCTGATCACACATTCTCTTCTGTTTCCGTC-ATACATGTTGA---TACATGtttttatttcattacctccgttaaactttacacttcatcataactaagga
gi|18 : TGCTGGTCCAAGCATGGCACAACAACCCACAAAGAACCACCAGGAACCTGATTGGAAGCATGAGGAGGCATTGCCAAGCTGTAATTAACAGTAACAGGTCACATACTCGATATAAATCCCATACCAGTTACATGTAGCTCCGTCAGCTTTTT-AGCAAATTTAGAAAATTCCCTA-TTTATCAAAAATCTCTATTTTCAATG
gi|19 : -CAAATTGAATGAAATATTTACACCATTTTTTCCCAA--CATTAT-ATTCATTGATTGTAAA-CAGCGCAATTATTACGTCCC-TTTCCATTGTTTGACTCCCAAACTTTAAC
gi|2 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACT-GGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTACtacttatttaattatctcccttttaacttttgattatcgtgtctaaccacagagcatgtcccgaaatcatatataaaacata
gi|20 : AAAGAGAG-----T-C-GACT-AATAAAT-AAATCAAAATA--CAGA-TCGT--CAACATTTTAAC--AA--CGT------------------AAATATCGACATTGTTACGCCCC-GTTCCATTGTT-GACAATGGAAATTTTAC
gi|21 : GTATATATAGAACAGCTCTTATGAATAATGAATGTTCTTCATGCGGTAAAGAAATGCGATG---ttttttattttcattaacttggttaccaagttttattacatttaattgaaataagtaatgaa
gi|22 : aagaacagatactttaaacactgttaaaaagctaatgagtaatttacgtgtttttttttacctttatgaacttctgtaaattacgcattgcttataaatgaactacgcAGGTAGGTAAAT-TTGAC--GA-AAAA-GCA-CACATTT--TGAA-CAGT--CAGCATTTTTGC--AATGGGTTAT-AA------A--GTAAACTATCAAAATTGTTATGCCCC-TTTCTATTGTTTAACGGTGAAACTTTTAC
gi|24 : AGAAAATTCTCTAT-----CAAGAATCTCTATTTCCAATattttattttattacctcccttgaaaattcattcatataaggct
gi|25 : A---TGCACTTGGCTATTCTTGGTGCTTAGCAAACTTTGAGCAGTATtgtcatcttactcatgagcttaaaacaaacataaaacacaaataaattctaaaattgttgcctacat
gi|27 : cGAACG-CTGGAATGG-CCAGCCCGATCCC--------CC-GACCTC
gi|3 : ATAAAACAGCTCTAATGAAATATGAATATTCACCATGCGGCAAAAAATT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATTACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACAAATCTATGCCTATGAACTATAAACAATTGCAATTTCCCATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAAAGGTAACTATTAAAGTTCATCCACATTAA-CATTAAGCACATATCGCCTCGTCATTTATGTTTGAAATAATTTGATTA------TTAATCTTGTTGTGTAA--A-GAATTCATAAC-AACAGGAGATCTACA-TAAAAAGTATA----TATCATTAACTCAAAGTTGTTATA-TTTGTCGTAATCGCACATTCTCTTGAATTTCCG-TGATACATAGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGCA---------------GGC--GATTAAA-GCC-CAAATTG--TGAA-CAGT--CACCATTCTTGC--AATGCGTTAT-AT------A--GCAAAATGCCGAAATTGTAATGTCCC-TTTTCATTGTTATGGGTTGAAACTTTTACa
gi|4 : AGATGAAGGGGATTGAACGTCTGGTATGG-CCAGCTTGATC---ACCC------GATCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AAGGACCATCAGGAACCTCATAGGGAGCATGTGGAGGCATTGCCAAGTTGTTATTAACAGCAACAGGTCACATACTTGATATTTATCCCATACCGGT------AAG---------------------------AAAATTCTC-----TATCAAGAATCTCTATTTCCAAtttttattttattacctcccttaaaacgttaatttaccatactttatcataa
gi|5 : gaccattattgaggcggctccgtgatggtctggggcgggatcagctgggatggacatacagacctcactgtcctttgactggggtacactaaatgcccagcggtatagagattctagatgcccaggtaagattgtatgttggtgcagtggctgatgggttcattctaatggacaataatacccatcctcatgcagcagggagtatatttGATCACGCCATGCACGTGATTAAT-ATGCAAGAA-C-------TGTCACAAATATGACTTCTCAATGTAACAA--------------ATAAATGGGAACCATTAAAGCTCGTT--TATAAA-CATTAAGCACATAGCACCACATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGT-AAA--A-GGAT--AAA-CAAA-AGGAGATCTACATTATATATTATG----TATCATTAACCCAAAGTTGTTATAATTTGTCTTAATCGCATATTCTCTTGAACTTTCGT-GATACATAGTGA---TATACGAACTTCGCCGAGATAGTCCAATTGAATATGAAGAAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAATATTTTTGC--AATGCGTTAT-AT------A--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTTATACGTTCAAACTTTTAC
gi|6 : tatagtgtgatgataagagacagacaggtttCT-CCTGACCTCGATCCCATCGAGCTTGTATGGACTGAGTTGCAGCTTGGAATTTCAGCCCGTCCAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCATCAGGAACCTTATA-AGAACATGAGAAGGCGTTACCAAGCTGTTATTAACAGCAACGAGTCACATACTCGATATTAAACCCATACCAGT------TAGTTCCGTCAGCTTTTT-GGCAAATTTAGAAAAATCCTTAGTTTATCAAAAATCTCTATTTTCAATGGtttttatttcattacttcccttgaaacgattttatt
gi|6 : CTATTACGTGAACA-TGTACTTGGATATTCTTTGTGCTTAGGATACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattacgtgaacatgtacttggatattctttgtgcttaggatactttgagcagtat
gi|7 : ctcctgacctcgatcccatcgagcttgtatggactgagttgcagcttggaatttcagcccgtccagtccagtcaagaagtatccattaatgttggtaccttgctggtccaagaatggaacaacatcccacaaaggaccatcaggaaccttataagaacatgagaaggcgttaccaagctgttattaacagcaacgagtcacatactcgatattaaacccataccagttagttccgtcagctttttggcaaatttagaaaaatccttagtttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGGTGGGGATTGAACG-CTGGAATGG-CCAGCCCGATCCCC--------C-GACCTCAAGCCCATCGAGCATGTGGGGGATGAGCTGCAGCTTGGAATTTCAGCCCGTCAAGTCCAAGCAAGAAGTATCCA--------GG-AGCT---TGGTCCAAGAATGGAACAACATTTCACAA
gi|7 : cGTTGCCAAGTTGTAGTTAACAGCAACGGGTCACATACAAAATGTTAATCCCATACCAAT------TAGCTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTCCATATTTTATCAAAAATTTCTATTTTCAATGGgttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|7 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaaA---TGTACTTGGATATTATCAGTGCTTAGCAAACTTTGAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|8 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaagttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacGTATGTATAAAACAGCTATTATGAAATATGAATGTTCACCATGCGGCAATACAAT-CGATG---CATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAGTCAAATGTTATGTTAAAATTTTACCGTAACCAAACTATGCCTATGAACTATGAATATTTGCAATTTCCAATTTCTATACATTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTA
gi|9 : atgccagaaatacgaaaattaaactcaattgccatcacgaagataaggtactgtttatactgttaaaaaaatagtgagcagttttggtttttattttaaactttttcaacatctgaaacttacgctttgcttattgaattactacatGAATATAGTATAAAAGAGCACGACATGCACGTGATAATTTATGTAAGATACAAATGTATGTTATCAGTATGAAGTCTGCCTGTAACAGTAGATCATATAGAAACCGGTGGAAACCATTAT-GTTTGCCGATATATA-CATGAAACATATATCGCCCAATCATCCATGTTTAAAACAATTGAATTA------TTAACCTTGTTTCGAAA--ATTAAT--CATAAAAACAG----------TTATAAATTATATAATTATCAGTACCCCAAACTAGTTGTA-TTTGTCTTAATCCCACTCTCTCTTCAATTTCCG-TGATACATGGTGAACTTATATA--------CGAGGTAGTCCAATT--AC----AGAAAGGGAGGTAAATAT-GACTAGA-AAAA-ACG-CACACTT--TGAA-CAGT--CAACAGTTTTGC--TATGCGTTAT-AT------ATTGTTTAGTATTGAAACTTTTA
blockSeqs : T T G G CACCCCTACT A GG G T C T CG TACATG T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A ACA G CNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A N T T A T A T A AAATGTA T C G T A A T A G CATGTA CT T TC TA G TAAT T A CT ACT C G CA TA T A T T GAA A TA A CC A TCATTGATT T TG T G
blockSeqs : A T . C ACCC G TT N A C T GT . . A ACA G . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N . A A T A T . . . A T A C T . T G G . . . . CA G . G . TC . C G TT T T . . A T . . C . . ATT . GA G G
blockSeqs : A . . T CC N NN G N A T TG . . T CA . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T . A T A C T . . . A T A C T . A C G . . . . AA G . G . TT . A G CA . T . . A G . . A . . A . TG T C
blockSeqs : A . . C CC C TT . T N C AG . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N . T T A C . . . G G A G A . A C A . . . . C . . C . T . A G AT . T . . A A . . A . . A . AT C C
blockSeqs : A . . T C T AG . . . . . . A . . A . A C . . . . . . . . . . T . A G C . T . . C T . . G . . A . TA A G
blockSeqs : . T T A . . . T . . . C . T . . A G . . C . . A . AT G G
blockSeqs : . . . . . . . . . A G . . A . . A . AT G G
blockSeqs : . . . . . . . . C T . . A . . A . G G C
blockSeqs : . . . . . . . . . . .
blockSeqCons : CC********* ******
originalCons : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCACCCCT-CC-GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
finalCons : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCCC---------GACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTTTCCATTGTTTAACTCCCAATACTTTGTATCTTATTAGTTCCCTCACAACTTTTCAGTGACTATCGTGTGTCTAACTACAGGGTCTTGTTCCGAGATAAATATAATACTATA
Unaligned ( gi|26 ): ATATACCCAGTAACAGGTCAAAATAATGATACTCGC
Alignments
lowQualScore : 1 2 44444444 111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 1 111 666666666666666666666666666666666666666666666666666666666666666666666 2222222 333333 11 1111 222 11 111111111
lowQualScore : 1 0 0 0 3 88888888 1 55 4 0 3 1 1 11 0 0 111111 4 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 777 3 111 999999999999999999999999999999999999999999999999999999999999999999999 1 8 1 1 1 1 1 8 8 6666666 1 1 4 5 1 6 1 2 1 888888 99 6 99 11 6 4444 3 6 0 77 888 1 3 111 00 1 4 4 3 777 4 55 2 55 0 4 555555555 0 4 66 2 1
lowQualScore : . . . . . ........ . .. . . . . . .. . . ...... . . ................................................................................. . ... . ... ..................................................................... . . . . . . . . . ....... . . . . . . . . . ...... .. . .. .. . .... . . . .. ... . . ... .. . . . . ... . .. . .. . . ......... . . .. . .
lowQualScore : 4 6 6 0 2 33333333 3 55 3 8 3 0 4 00 8 8 555555 0 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 999 3 777 000000000000000000000000000000000000000000000000000000000000000000000 0 0 4 4 4 0 0 0 0 0000000 8 0 2 2 0 7 0 5 0 333333 22 7 22 00 7 2222 3 7 7 33 888 3 9 333 66 9 4 0 3 111 0 55 2 55 8 0 999999999 5 4 33 9 1
consensus : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCC--------CGACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
Reference ( family-1259 ) : AGAGGGAGGGGATTGAACGTCTGGAATGGGCCAGCCCGATCCCC--------CGACCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCACCAGGAACCCGATAGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAGAAAATTCCCTATTTTATCAAAAATCTCTATTTTCAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATNTTGCAGCTATAACGTGAA---TGTACTTGGATATTCTTGGTGCTTAGCAAACTTTGAGCAGTATATATAAAACAGCTCTTATGAAATATGAATGTTCACCATGCGGCAAAAAAAT-CGATG---TATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATNACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACCAAACTATGCNTATGAACTATGAACAATTGCAATTTCCAATTTCTANGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGNAACCATTAAAGTTCGTCCATATNAA-CATTNAGCACATATCGCCTCATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGTGAAA--A-GAAT--AAAACAAACAGGAGATCTACATTATAAATTATA----TATCATTAACCCAAANTTGTTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATGGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGAAAGGGAGGTAAAT-C-GAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTGTTACGTCCC-TTTCCATTGTTNNACGTTGAAACTTTTAC
gi|1 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACTGGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTAC
gi|10 : CAGCTTGGAATTACAGCCCGTCAAGTCCAGCCAAGAAGTATCCAGGAGC-TTGGTGCCATACTGGTCCAA-----------CATCCCACAAAGGACCATCAGGAACCTGATCGGGAGCATGAGGAGGCGTTGCCAAGCTGTAATTAACAGCAACGGGTCACATACTCGATATTAATTCCATATCA-T---------CTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTC
gi|10 : GCTTAGCAAACTTTGAGAAGTATATATaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttagcaaactttgagaagtatatattaca
gi|11 : cagcttggaattacagcccgtcaagtccagccaagaagtatccaggagcttggtgccatactggtccaacatcccacaaaggaccatcaggaacctgatcgggagcatgaggaggcgttgccaagctgtaattaacagcaacgggtcacatactcgatattaattccatatcatctccgtcagctttttggcaaattaagaaaattcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGACCACCAGTAACCTGATGTGGAGCATGAGGAGGCGTTGCCAAGCTGTTGTTAACAGCAACGGGTCACATACCCGATATCAATCCCATACCAGT------TAGCTCCGTCAGCTTTTT-GGCAAATTTAG-AAATTCACT-TTTTA-CAAAAATCTCTATTTTCAATGGtaca
gi|11 : CAATATTACAACTATAACGCAAAACATGGTCTTGAATATTTTTTGTGCTTAGCAAACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaatattacaactataacgcaaaacatggtcttgaatattttttgtgcttagcaaactttgagcagtat
gi|12 : aggaccaccagtaacctgatgtggagcatgaggaggcgttgccaagctgttgttaacagcaacgggtcacatacccgatatcaatcccataccagttagctccgtcagctttttggcaaatttagaaattcactttttacaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcCCATACCAGT------TAGCTCCATCAGCTTTAC-AACAAATTTAGAAAATTCCCTATTTTATCAAAAATCGCTATTTTCAATGG
gi|12 : AACAATATTGCAACTATAACATAAAACACGTACTTGGACATTCTTGGTGCTTAGCAAACTATGAGCAtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcataacaatattgcaactataacataaaacacgtacttggacattcttggtgcttagcaaactatgagca
gi|13 : ccataccagttagctccatcagctttacaacaaatttagaaaattccctattttatcaaaaatcgctattttcaatggtcatctaactaaaaaacttctaacaaacataaaacacaaagaaattctaaaatttttgcctacatcttaatagaaaatatcaaatgaaaagtataaacaattttcatGTATATATAGAACAGCTCTTATGAATAATGAATGTACTTCATGAAGTAAAGAAATGCGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACACAAAT-GCCGAGTACCGTGTTATGTTAAAATATTGCTGTAACCAAACTATGCTGATGAATTGTG
gi|14 : tgcattgcttataaatgaactacacCCCATATCAAT------TAGCCCCGTCAGTTTTTTTGGCAAGTTTCGAAAATTCCCCATTTTATCAAAAATCTCTATTTTCAATGGca
gi|14 : TACTATCGATGCTTAGCAAACTTTGAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgactactatcgatgcttagcaaactttgagca
gi|15 : cccatatcaattagccccgtcagtttttttggcaagtttcgaaaattccccattttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgacTGTCTTAATCGCACATTCTCTTCAATTTTC-CTGGTACATGGTAA---TAAACGAACTTCGTCGAGGTAGTCCAATTGCATACAATGAAAGGGAG---------------ATAAAA-GCA-CA---------------C--CA------------AATGCGATATAAT------A--GTAAAATGCCGAAATTGTTACGCCCCTTTTCCATTGTTTGGCTTTGAAAGTTTTAC
gi|16 : TACATGGTGA---TATACAAACTTCTCTGAGGTAGTCCATTTGCATATAAAGAAAGGGAGGTAAAT-C-GAC--GATAAAAAGCA-CATATTT--TGAA-CAGT--CAACATTTTTGC--AGTGAGCTAT-AT------A--GTACAATGACGAAATTGTTACATCCC-TTCCCATTGTTGAA-GCCGAAACATTTACtttatattttattaactcccttgaaaatgtatgacttttaaacttccatacttcatatcaaggaatt
gi|17 : ttTAAATTATTAATAAGTTAATGGCA-CCATCAAAGTTCGTCTATAAAAAACGTTTAGCACATATAGTCTCATCACTGATGTTT--AACATTTTAATTG------TTAATCTTGTTGTGAAACTA-GTTT--ATAA--AACAG------TACATTATTAATTATA----TGTTATTAA---------ATTATA-TTTATCCTGATCACACATTCTCTTCTGTTTCCGTC-ATACATGTTGA---TACATGtttttatttcattacctccgttaaactttacacttcatcataactaagga
gi|18 : TGCTGGTCCAAGCATGGCACAACAACCCACAAAGAACCACCAGGAACCTGATTGGAAGCATGAGGAGGCATTGCCAAGCTGTAATTAACAGTAACAGGTCACATACTCGATATAAATCCCATACCAGTTACATGTAGCTCCGTCAGCTTTTT-AGCAAATTTAGAAAATTCCCTA-TTTATCAAAAATCTCTATTTTCAATG
gi|19 : -CAAATTGAATGAAATATTTACACCATTTTTTCCCAA--CATTAT-ATTCATTGATTGTAAA-CAGCGCAATTATTACGTCCC-TTTCCATTGTTTGACTCCCAAACTTTAAC
gi|2 : AGAGGGAAGGGATTGTACGTCTGGACTGGGCCAGCCGGACCCCCACCCCTACTGGCCTCGATCCCATCGAGCTTGTATGGACCGAGTTGCAGCTTGGAATTTCAGCCCGTCGAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGATCCAAGAAAGGAACAATATCACACAAAGGATCACCAGGAACCCGATAGGTAGCATGAGGAGGCGTTACCAAGCTGTAATTAACAGCAACGGGTCACATGCTCGATAATAAACCCATAACAGT------TAGCTCCGTCAGTTTTTT-GGCAAATTTAAAAAAATCCCTATTTTATCAAAAATCTCTTTTTTTAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTTTGTAGCTATAACGTGAA---TGTACTTAGATTTTCTTGGTGCTCAGCAAACTTTGAGCAGTATATATAATACAGCTCTTATAAAATATGAATATTCACCATGCGGCAAAAAAAT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GCTGAGTAACATGTAATGTTAAAAATTTGCCGTAACCTAACTATGTATATGAACTATGAACAATTGCAATTTCCAATTTCTAAGCGTTTATTGTGAATATAGTATAGAAGGTCATGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAATGGTAGCTATTAAAGTTCATCCATATTAA-CATTTAGCACATATGGCCTCATCATTTATGTTCGAAACAATTCAATTACATGTATTAATATTGTTGTGAAA--A-GAAT--AAAATAAACAAGAGATCTACATTATAAACTATA----TATCATTAACCCAAATTTGCTATA-TTTGTCTTAATCGCACATTCTCTTGAATTTCCGTTGATACATAGTGA---TATACGAACTTCGCCAAGGTAGTCCAATTGAATATGAAGCAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAACATTTTTGC--AATGCGTTAT-AT------A--GTAAAATATCGAAATTATTACGTCCC-TTTCCATTGTTATACCTTCAAACTTTTACtacttatttaattatctcccttttaacttttgattatcgtgtctaaccacagagcatgtcccgaaatcatatataaaacata
gi|20 : AAAGAGAG-----T-C-GACT-AATAAAT-AAATCAAAATA--CAGA-TCGT--CAACATTTTAAC--AA--CGT------------------AAATATCGACATTGTTACGCCCC-GTTCCATTGTT-GACAATGGAAATTTTAC
gi|21 : GTATATATAGAACAGCTCTTATGAATAATGAATGTTCTTCATGCGGTAAAGAAATGCGATG---ttttttattttcattaacttggttaccaagttttattacatttaattgaaataagtaatgaa
gi|22 : aagaacagatactttaaacactgttaaaaagctaatgagtaatttacgtgtttttttttacctttatgaacttctgtaaattacgcattgcttataaatgaactacgcAGGTAGGTAAAT-TTGAC--GA-AAAA-GCA-CACATTT--TGAA-CAGT--CAGCATTTTTGC--AATGGGTTAT-AA------A--GTAAACTATCAAAATTGTTATGCCCC-TTTCTATTGTTTAACGGTGAAACTTTTAC
gi|24 : AGAAAATTCTCTAT-----CAAGAATCTCTATTTCCAATattttattttattacctcccttgaaaattcattcatataaggct
gi|25 : A---TGCACTTGGCTATTCTTGGTGCTTAGCAAACTTTGAGCAGTATtgtcatcttactcatgagcttaaaacaaacataaaacacaaataaattctaaaattgttgcctacat
gi|27 : cGAACG-CTGGAATGG-CCAGCCCGATCCCC--------CGACCTC
gi|3 : ATAAAACAGCTCTAATGAAATATGAATATTCACCATGCGGCAAAAAATT-CGATG---TATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAAGTATTACACAAAT-GCTGAGTAACATGTAATGTTAAAATTTTGCCGTAACAAATCTATGCCTATGAACTATAAACAATTGCAATTTCCCATTTCTATGCGTTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTAAAT-ATGCAAGAT-C-------TGTCACCAATATGAATTCTCCATGTCACAATAAGTTATTTAAAAATTAAAGGTAACTATTAAAGTTCATCCACATTAA-CATTAAGCACATATCGCCTCGTCATTTATGTTTGAAATAATTTGATTA------TTAATCTTGTTGTGTAA--A-GAATTCATAAC-AACAGGAGATCTACA-TAAAAAGTATA----TATCATTAACTCAAAGTTGTTATA-TTTGTCGTAATCGCACATTCTCTTGAATTTCCG-TGATACATAGTGA---TATACGAACTTCGCCGAGGTAGTCCAATTGAATATGAAGCA---------------GGC--GATTAAA-GCC-CAAATTG--TGAA-CAGT--CACCATTCTTGC--AATGCGTTAT-AT------A--GCAAAATGCCGAAATTGTAATGTCCC-TTTTCATTGTTATGGGTTGAAACTTTTACa
gi|4 : AGATGAAGGGGATTGAACGTCTGGTATGG-CCAGCTTGATCACC--------CGATCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AAGGACCATCAGGAACCTCATAGGGAGCATGTGGAGGCATTGCCAAGTTGTTATTAACAGCAACAGGTCACATACTTGATATTTATCCCATACCGGT------AAG---------------------------AAAATTCTC-----TATCAAGAATCTCTATTTCCAAtttttattttattacctcccttaaaacgttaatttaccatactttatcataa
gi|5 : gaccattattgaggcggctccgtgatggtctggggcgggatcagctgggatggacatacagacctcactgtcctttgactggggtacactaaatgcccagcggtatagagattctagatgcccaggtaagattgtatgttggtgcagtggctgatgggttcattctaatggacaataatacccatcctcatgcagcagggagtatatttGATCACGCCATGCACGTGATTAAT-ATGCAAGAA-C-------TGTCACAAATATGACTTCTCAATGTAACAA--------------ATAAATGGGAACCATTAAAGCTCGTT--TATAAA-CATTAAGCACATAGCACCACATCATTTATGTTTGAAACAATTTAATTA------TTAATCTTGTTGT-AAA--A-GGAT--AAA-CAAA-AGGAGATCTACATTATATATTATG----TATCATTAACCCAAAGTTGTTATAATTTGTCTTAATCGCATATTCTCTTGAACTTTCGT-GATACATAGTGA---TATACGAACTTCGCCGAGATAGTCCAATTGAATATGAAGAAAGGGAAGTAAAT-CAGAC--GATAAAA-GCA-CAAATTG--TGAA-CAGT--CAATATTTTTGC--AATGCGTTAT-AT------A--GTAAAATACCGAAATTGTTACGTCCC-TTTCCATTGTTATACGTTCAAACTTTTAC
gi|6 : tatagtgtgatgataagagacagacaggtttCTCC--------TGACCTCGATCCCATCGAGCTTGTATGGACTGAGTTGCAGCTTGGAATTTCAGCCCGTCCAGTCCAGTCAAGAAGTATCCATTAATGTTGGTACCTTGCTGGTCCAAGAATGGAACAACATCCCACAAAGGACCATCAGGAACCTTATA-AGAACATGAGAAGGCGTTACCAAGCTGTTATTAACAGCAACGAGTCACATACTCGATATTAAACCCATACCAGT------TAGTTCCGTCAGCTTTTT-GGCAAATTTAGAAAAATCCTTAGTTTATCAAAAATCTCTATTTTCAATGGtttttatttcattacttcccttgaaacgattttatt
gi|6 : CTATTACGTGAACA-TGTACTTGGATATTCTTTGTGCTTAGGATACTTTGAGCAGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattacgtgaacatgtacttggatattctttgtgcttaggatactttgagcagtat
gi|7 : ctcctgacctcgatcccatcgagcttgtatggactgagttgcagcttggaatttcagcccgtccagtccagtcaagaagtatccattaatgttggtaccttgctggtccaagaatggaacaacatcccacaaaggaccatcaggaaccttataagaacatgagaaggcgttaccaagctgttattaacagcaacgagtcacatactcgatattaaacccataccagttagttccgtcagctttttggcaaatttagaaaaatccttagtttatcaaaaatctctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAGGGTGGGGATTGAACG-CTGGAATGG-CCAGCCCGATCCCC--------CGACCTCAAGCCCATCGAGCATGTGGGGGATGAGCTGCAGCTTGGAATTTCAGCCCGTCAAGTCCAAGCAAGAAGTATCCA--------GG-AGCT---TGGTCCAAGAATGGAACAACATTTCACAA
gi|7 : cGTTGCCAAGTTGTAGTTAACAGCAACGGGTCACATACAAAATGTTAATCCCATACCAAT------TAGCTCCGTCAGCTTTTT-GGCAAATTAAGAAAATTCCATATTTTATCAAAAATTTCTATTTTCAATGGgttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|7 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaaA---TGTACTTGGATATTATCAGTGCTTAGCAAACTTTGAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacatgtacttggatattatcagtgcttagcaaactttgagcagta
gi|8 : cagagggtggggattgaacgctggaatggccagcccgatcccccgacctcaagcccatcgagcatgtgggggatgagctgcagcttggaatttcagcccgtcaagtccaagcaagaagtatccaggagcttggtccaagaatggaacaacatttcacaagttgccaagttgtagttaacagcaacgggtcacatacaaaatgttaatcccataccaattagctccgtcagctttttggcaaattaagaaaattccatattttatcaaaaatttctattttcaatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatacGTATGTATAAAACAGCTATTATGAAATATGAATGTTCACCATGCGGCAATACAAT-CGATG---CATAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAGTCAAATGTTATGTTAAAATTTTACCGTAACCAAACTATGCCTATGAACTATGAATATTTGCAATTTCCAATTTCTATACATTTATTGTGAATATAGTATAGAAGGTCACGTAATGCACGTGCTA
gi|9 : atgccagaaatacgaaaattaaactcaattgccatcacgaagataaggtactgtttatactgttaaaaaaatagtgagcagttttggtttttattttaaactttttcaacatctgaaacttacgctttgcttattgaattactacatGAATATAGTATAAAAGAGCACGACATGCACGTGATAATTTATGTAAGATACAAATGTATGTTATCAGTATGAAGTCTGCCTGTAACAGTAGATCATATAGAAACCGGTGGAAACCATTAT-GTTTGCCGATATATA-CATGAAACATATATCGCCCAATCATCCATGTTTAAAACAATTGAATTA------TTAACCTTGTTTCGAAA--ATTAAT--CATAAAAACAG----------TTATAAATTATATAATTATCAGTACCCCAAACTAGTTGTA-TTTGTCTTAATCCCACTCTCTCTTCAATTTCCG-TGATACATGGTGAACTTATATA--------CGAGGTAGTCCAATT--AC----AGAAAGGGAGGTAAATAT-GACTAGA-AAAA-ACG-CACACTT--TGAA-CAGT--CAACAGTTTTGC--TATGCGTTAT-AT------ATTGTTTAGTATTGAAACTTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTTTCCATTGTTTAACTCCCAATACTTTGTATCTTATTAGTTCCCTCACAACTTTTCAGTGACTATCGTGTGTCTAACTACAGGGTCTTGTTCCGAGATAAATATAATACTATA
Unaligned ( gi|26 ): ATATACCCAGTAACAGGTCAAAATAATGATACTCGC