lowQualScore : 77 6 1
lowQualScore : .. . .
lowQualScore : 44 0 9
consensus : GTTTAATATAGACATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-AAATTT
Reference ( gi|7 ) : GTTTATTATAGACATTGATATTGTATTTTCTTCCCTTCGGAAGATTGATAGT-AAATTT
gi|9 : GTTTAT-ATAAACATTGATATTATATTTTCTTCCCTTCAGAAGATCAATAGT-AA
gi|1 : GTTTAATATAGACATTGATATTATATTTTCTTCCCTACGGAAAATCAATAGT-AAAATTt
gi|8 : gtccatattcgaatgtcagttatttaccttacaaaatggatgcgacatagtttttaaaagactgcgattttcctgaagaaggcgtaagcggaaaatttgtgaaaaaaaaaagaGTTTCATATATACATTGATATTATATTTTTTTCCTTTCGGAAGATCGATAGT-AAAT
gi|5 : GTTTAATATAGACATTGGAATTATATTTACTTACCTTCGGAGCATCCGTAGT-AAA
gi|10 : aagaATTATAGACATTGATATTATATTTTCTACCCTTTGGAAGATCAATAGT-AAatccata
gi|6 : aATAGAAATTTATATAATATTTTCATCCCTTCGGAAGATCGAAAGT-AAATTT
gi|12 : aaaagagttttagTTGATATAATATTTTCTTCCCTTCGGAAGATTGATAGT-AAAT
gi|14 : TGATTTAATATTTTCTTCCCTTAGGAAGATTGATAGT-AA
gi|11 : ATATTATATTTTCTTCCCTTCAGAGGATCAATAGT-AAAATT
gi|13 : caTATTATATTTTCTCCCCTTCGGAAGATTGAAAGT-AAATTTcg
gi|20 : TTATATTTTCTTCCCTTCGGAAGATTGATAGT--AATTT
gi|16 : TATATTTTCTTCCCTTCGGAAGATTGATAGT-AAATTT
gi|23 : TATATTTTCTTCCCTTCGGAAGACTGATAGT-AAATTt
gi|21 : TATATTTTCTTCCCTTTGGAAGATTGATAGC-AAATTT
gi|19 : TATTTTCTTCCCTTCGGAAGATTGATAGT-AAATTT
gi|22 : aaTATTTTCTTCCCTTTGGAAGATTGATAGT-AAATTTt
gi|24 : aTATTTTCTTCCCTTCGGTAGATTGATAGT-AAAT
gi|18 : aTATTTTCTTCCCTTCGGAAGATCGATAGTAAAATTTat
gi|2 : tTATCATCTTCCCTATGGAATATTAATAGT-AAAa
gi|15 : ctattttcctgatgaaggcaaatgccgaaactttgaaaaacgagttcaaaataaataaaaaaaaatATTTTCTTCCCTCTGGAGGATCCATGGT-AAAATT
gi|17 : aaTTTTCTTCCCTTCGGAAGATTGATAGT-AAATTTcat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TTTTCCCGATGAAGGAATAACCGAAATTTGAAAGAAAAAAAAAGTTAAATATAGAAATGTCATTTATATATACTTCGCTCACGAAGGATTCAA
Unaligned ( gi|4 ): AAAGAGTTAATACCTAAAGCCATTGGTATTATATTTTATTCCCTCCGGAGGATCCATAGTATAATTCA
Alignments
lowQualScore : 1 66 66 1 1
lowQualScore : . .. .. . .
lowQualScore : 7 99 99 8 8
consensus : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
Reference ( family-1068 ) : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
gi|1 : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTACGGAAAATCAATAGT-A-AAATT
gi|10 : gtccatattcgaatgtcagttatttaccttacaaaatggatgcgacatagtttttaaaagactgcgattttcctgaagaaggcgtaagcggaaaatttgtgaaaaaaaaaagaTA--TAGA--CATTGATATTATATTTTCTACCCTTTGGAAGATCAATAGT-A-
gi|11 : aatATATTATATTTTCTTCCCTTCAGAGGATCAATAGT-A-AAATT
gi|12 : caTTGATATAATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATcg
gi|13 : TATTATATTTTCTCCCCTTCGGAAGATTGAAAGT-A-AATTT
gi|14 : TGATTTAATATTTTCTTCCCTTAGGAAGATTGATAGT-A-
gi|15 : ATTTTCTTCCCTCTGGAGGATCCATGGT-A-AAATT
gi|16 : aaTATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTcat
gi|17 : ATTTTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTt
gi|18 : TATTTTCTTCCCTTCGGAAGATCGATAGTAA-AATTTta
gi|19 : tATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTa
gi|20 : aTTATATTTTCTTCCCTTCGGAAGATTGATAGT---AATTTt
gi|21 : TATATTTTCTTCCCTTTGGAAGATTGATAGC-A-AATTT
gi|22 : ATATTTTCTTCCCTTTGGAAGATTGATAGT-A-AATTT
gi|23 : TATATTTTCTTCCCTTCGGAAGACTGATAGT-A-AATT
gi|24 : ATATTTTCTTCCCTTCGGTAGATTGATAGT-A-AAT
gi|4 : TTAATACCTAAAGCCATTGGTATTATATTTTATTCCCTCCGGAGGATCCATAGT-ATAATTat
gi|5 : aaagagGTTTAATA--TAGA--CATTGGAATTATATTTACTTACCTTCGGAGCATCCGTAGT-A-AAca
gi|6 : aagaGTTTTAGA--TAGA--AATTTATATAATATTTTCATCCCTTCGGAAGATCGAAAGT-A-AATTTatccata
gi|7 : aaaagaGTTTATTA--TAGA--CATTGATATTGTATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTT
gi|8 : GTTTCATA--TATA--CATTGATATTATATTTTTTTCCTTTCGGAAGATCGATAGT-A-AAT
gi|9 : GTTTA-TA--TAAA--CATTGATATTATATTTTCTTCCCTTCAGAAGATCAATAGT-A-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTATTTTCCTGATGAAGGCAAATGCCGAAACTTTGAAAAACGAGTTCAAAATAAATAAAAAAAAATTATCATCTTCCCTATGGAATATTAATAGTAAA
Unaligned ( gi|3 ): TTTTCCCGATGAAGGAATAACCGAAATTTGAAAGAAAAAAAAAGTTAAATATAGAAATGTCATTTATATATACTTCGCTCACGAAGGATTCAA
Alignments
lowQualScore : 1 66 66 1 1
lowQualScore : . .. .. . .
lowQualScore : 7 99 99 8 8
consensus : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
Reference ( family-1068 ) : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
gi|1 : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTACGGAAAATCAATAGT-A-AAATT
gi|10 : gtccatattcgaatgtcagttatttaccttacaaaatggatgcgacatagtttttaaaagactgcgattttcctgaagaaggcgtaagcggaaaatttgtgaaaaaaaaaagaTA--TAGA--CATTGATATTATATTTTCTACCCTTTGGAAGATCAATAGT-A-
gi|11 : aatATATTATATTTTCTTCCCTTCAGAGGATCAATAGT-A-AAATT
gi|12 : caTTGATATAATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATcg
gi|13 : TATTATATTTTCTCCCCTTCGGAAGATTGAAAGT-A-AATTT
gi|14 : TGATTTAATATTTTCTTCCCTTAGGAAGATTGATAGT-A-
gi|15 : ATTTTCTTCCCTCTGGAGGATCCATGGT-A-AAATT
gi|16 : aaTATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTcat
gi|17 : ATTTTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTt
gi|18 : TATTTTCTTCCCTTCGGAAGATCGATAGTAA-AATTTta
gi|19 : tATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTa
gi|20 : aTTATATTTTCTTCCCTTCGGAAGATTGATAGT---AATTTt
gi|21 : TATATTTTCTTCCCTTTGGAAGATTGATAGC-A-AATTT
gi|22 : ATATTTTCTTCCCTTTGGAAGATTGATAGT-A-AATTT
gi|23 : TATATTTTCTTCCCTTCGGAAGACTGATAGT-A-AATT
gi|24 : ATATTTTCTTCCCTTCGGTAGATTGATAGT-A-AAT
gi|4 : TTAATACCTAAAGCCATTGGTATTATATTTTATTCCCTCCGGAGGATCCATAGT-ATAATTat
gi|5 : aaagagGTTTAATA--TAGA--CATTGGAATTATATTTACTTACCTTCGGAGCATCCGTAGT-A-AAca
gi|6 : aagaGTTTTAGA--TAGA--AATTTATATAATATTTTCATCCCTTCGGAAGATCGAAAGT-A-AATTTatccata
gi|7 : aaaagaGTTTATTA--TAGA--CATTGATATTGTATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTT
gi|8 : GTTTCATA--TATA--CATTGATATTATATTTTTTTCCTTTCGGAAGATCGATAGT-A-AAT
gi|9 : GTTTA-TA--TAAA--CATTGATATTATATTTTCTTCCCTTCAGAAGATCAATAGT-A-
blockSeqs : A CC GC A T
blockSeqs : A . . . .
blockSeqs : A . . . .
blockSeqs : T . . . .
blockSeqs : A . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
finalCons : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTATTTTCCTGATGAAGGCAAATGCCGAAACTTTGAAAAACGAGTTCAAAATAAATAAAAAAAAATTATCATCTTCCCTATGGAATATTAATAGTAAA
Unaligned ( gi|3 ): TTTTCCCGATGAAGGAATAACCGAAATTTGAAAGAAAAAAAAAGTTAAATATAGAAATGTCATTTATATATACTTCGCTCACGAAGGATTCAA
Alignments
lowQualScore : 1 66 66 1 1
lowQualScore : . .. .. . .
lowQualScore : 7 99 99 8 8
consensus : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
Reference ( family-1068 ) : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTTCGGAAGATCGATAGT-A-AATTT
gi|1 : GTTTAATA--TAGA--CATTGATATTATATTTTCTTCCCTACGGAAAATCAATAGT-A-AAATT
gi|10 : gtccatattcgaatgtcagttatttaccttacaaaatggatgcgacatagtttttaaaagactgcgattttcctgaagaaggcgtaagcggaaaatttgtgaaaaaaaaaagaTA--TAGA--CATTGATATTATATTTTCTACCCTTTGGAAGATCAATAGT-A-
gi|11 : aatATATTATATTTTCTTCCCTTCAGAGGATCAATAGT-A-AAATT
gi|12 : caTTGATATAATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATcg
gi|13 : TATTATATTTTCTCCCCTTCGGAAGATTGAAAGT-A-AATTT
gi|14 : TGATTTAATATTTTCTTCCCTTAGGAAGATTGATAGT-A-
gi|15 : ATTTTCTTCCCTCTGGAGGATCCATGGT-A-AAATT
gi|16 : aaTATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTcat
gi|17 : ATTTTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTt
gi|18 : TATTTTCTTCCCTTCGGAAGATCGATAGTAA-AATTTta
gi|19 : tATATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTTa
gi|20 : aTTATATTTTCTTCCCTTCGGAAGATTGATAGT---AATTTt
gi|21 : TATATTTTCTTCCCTTTGGAAGATTGATAGC-A-AATTT
gi|22 : ATATTTTCTTCCCTTTGGAAGATTGATAGT-A-AATTT
gi|23 : TATATTTTCTTCCCTTCGGAAGACTGATAGT-A-AATT
gi|24 : ATATTTTCTTCCCTTCGGTAGATTGATAGT-A-AAT
gi|4 : TTAATACCTAAAGCCATTGGTATTATATTTTATTCCCTCCGGAGGATCCATAGT-ATAATTat
gi|5 : aaagagGTTTAATA--TAGA--CATTGGAATTATATTTACTTACCTTCGGAGCATCCGTAGT-A-AAca
gi|6 : aagaGTTTTAGA--TAGA--AATTTATATAATATTTTCATCCCTTCGGAAGATCGAAAGT-A-AATTTatccata
gi|7 : aaaagaGTTTATTA--TAGA--CATTGATATTGTATTTTCTTCCCTTCGGAAGATTGATAGT-A-AATTT
gi|8 : GTTTCATA--TATA--CATTGATATTATATTTTTTTCCTTTCGGAAGATCGATAGT-A-AAT
gi|9 : GTTTA-TA--TAAA--CATTGATATTATATTTTCTTCCCTTCAGAAGATCAATAGT-A-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTATTTTCCTGATGAAGGCAAATGCCGAAACTTTGAAAAACGAGTTCAAAATAAATAAAAAAAAATTATCATCTTCCCTATGGAATATTAATAGTAAA
Unaligned ( gi|3 ): TTTTCCCGATGAAGGAATAACCGAAATTTGAAAGAAAAAAAAAGTTAAATATAGAAATGTCATTTATATATACTTCGCTCACGAAGGATTCAA