lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222222222 22 11 777777777777777777777 1 33333333333333333333333333333333333 1 2 2 222 11 22222 1111 1 111 1111111111111111111111111111111111111111111111111111111111111111111 2 11 111111 1 1
lowQualScore : 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 3333333333 1 55 2 1 11 11 88 3 1 222222222222222222222 8 3 7 0 6 00000000000000000000000000000000000 0 6 0 0 111 2 4 2 7 77 7 55555 1111 8888 33 444 2 5 44 2 55 0 7 11 000 8888 3 44 0 9999999999999999999999999999999999999999999999999999999999999999999 0 33 555555 0 2 5
lowQualScore : . ............................................................................................. .. .......... . .. . . .. .. .. . . ..................... . . . . . ................................... . . . . ... . . . . .. . ..... .... .... .. ... . . .. . .. . . .. ... .... . .. . ................................................................... . .. ...... . . .
lowQualScore : 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 2222222222 0 22 2 2 33 00 33 5 2 000000000000000000000 3 7 0 7 0 88888888888888888888888888888888888 5 0 0 0 555 5 0 5 3 00 3 77777 3333 3333 77 777 5 9 66 4 11 2 3 66 000 1111 8 88 8 1111111111111111111111111111111111111111111111111111111111111111111 0 88 222222 0 2 0
consensus : NNAGATACTTGTATAA-------TATGAAANATGGTNNAAAT-AAAA--TNACGACTNGAT--ATTNAC--CTN-T-ANTAAAGNAGT---CA-GGGT-CNTCCGTGGCCGAGTGGTCTA----AGGCGTCGTCTCAAGATCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGAATCNCGCTCGC--TCCAAANACTTTATATGAGA------C----AGTTT-CC--GGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGGCTNACNCGANTCTAAGGCC-CCCTCCANCAATAAAAACATGGATATNCCANATATAANCTGAAAT-NTGTTAAAAATAG-C-TTAAGGCCAT---TATA----AAT--TAATT---GCTAGATTATCATCC--GAATTTTT-CTTAAAAA-GGGGA---GGGCG--GGAGGATTTTATTTTTTATTTTNA-----TTTT-A--GTTTTCGATG-------GNTTTTTTTATANATTTTTTAAT--A-----TT-TATGAAAATAAAAA--GGG--TC-GG-GCGGCATGAAAATTAGGG
Reference ( gi|1 ) : AAAAATACTTGTCTGACTGGACATGTGAAATA----AAAAATTAAAA--TAATGACCAGAT--ATTAAC--TTC-TCAATAAAGAAGT---CA-GGGT-CATCCGTGGCCAAGTGGTCTA----AGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGC--TCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTCTGA-ATCAGTC--AGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGG-CGTTAAGGCCAT---AATA----AAT--TAATT---GCTAGATTATCATTC--AAATTTTT-CTTAAAAACGGAGA---GGGTG--GGAGGATTTTATTTTTTATTTAAAAAAGTTTTTGA-TGTTTTTGATGTTTTTTTGTTTTTTTTAT-TATTTTTTAAT--ATTTTTTTTTATGAAAAT-AAAA--GGG--TC-GG-GCAGCATGAAAATGAGGG
gi|2 : AGATACTTGTATAA-------TATGAAATATGGTACAAAT--AAC--TCATTACAACAC--AT--ACCGTTC-T-AATA--GCAATTG-CA-GGGTACA-CCGTGGCCGAATGGTCTA----CGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGC--TCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCA----GA-TTCATTCTAAGGCC-CCCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTAAAATAT---AATAATAATT---ACAAGA
gi|7 : gattcgacagtttcttaatgtcttatcatatAAAGA----CAAAATTAAAAAGTTATGATTTGATTGCTTTAC--CTA-T---TAAAGCAGT---C-------C-TCAGTGGCCGAATAGTTTA----AAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCT--CATGCAGTCCAAACATTTTGTAgaggctacggcacatacaatatg
gi|4 : tattATAAAAA--TGACG-CTTGAT--ATTAA----------ATAAAAATGA---CA-TTG---AT---TGAC--AGTGGTTGATCATGGGCG-TGTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGG--TCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTACACGAGTC--A---------CCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGG-CGTTGAaacaagaaaat
gi|11 : CAGAT--GTTAAC--TTGATTATTACAGTACTAAACA-GGGT-CCTCTTTGGCTGAGTGGTCCA----ATACATCATCTCATGGTCACTT
gi|8 : --ATTTAC--CTT-TCACT---GAGGT---CATGGGT-CCTTCATGGGCAAGTTGTCCA----AGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCC
gi|21 : AGTGGTCTA----AGGTCCCATCTCAAGATCACTTACCTCTCAC
gi|13 : AAACATTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAGt
gi|3 : ctcCTGAAGT-GTGTCAAAA-TA-----TAAGGATAT---TATA----AAT--TAATT---GCTAGATTATTATAC--AAAATTTT-CTTAAAAACGGGGA---GGGCA--GGAGGATTT--TTTTTCATTTTTAAAA--TTTTGACTGTTTTTAAatt
gi|20 : aatagcactggtacaacacaaTTAAG-CCAT---TATA----AAT--TAATT---GCTAGATTATCATTT--TCATTTTT-ataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|15 : aTTGAGGTCAT---TATA----AAT--TAAT--------GATCATC---C--AAAT-TTT-CTTCAAAAGGGGGA---GTGTT--AGAGGa
gi|12 : cTTAGGCCCGT---TATA----A-T--TAATT---GCTTGATTCTCATCC--GATTTTTT-CTAAAAAA-----------GCG-----GGATTTTTTTTTTTAT
gi|10 : TATGGTCAG---TATA----AAG--TAATT---GCTAGATAA-----C--GA---TTT-CTTTAAAA-GGAGA---AGG-G--GGAGGA-TTTGTTTTTTAT
gi|16 : TGAGGCCAT---AATA----AAC--TC-------CTAGATTTTCATCC--AACTTTAT--TTCAAAACAGA-A---GGTTG--GGatttgtttttt
gi|5 : AAGGCCAT---AATA----AAT--TAATT---GCTAGATTATCATCC--CAA
gi|14 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAAGATCAC---AATA----AAT--TAAAT---GCTAGATTTCCATCCCTGAACTTTT--TTAAtccg
gi|5 : tcagtgcggcAGGCCAT---TATA----AAT--TAATT---GCTAGATTATCATCC--AAATTTTT-CTTAAAAATGGGGA---GGGCG--GGAGGATTTTATTTTTTATTTTCA----TTTTTTA-AATTTTTGATG-------GGTTTTTTTATATATTTTTTAA------------TATGAAAATAAAAA--GGG--TC-AGTGCGGCATTAAAATTAGGGtgcagatat
gi|3 : tAGGCAAT---AATA----AAT--TAATT---GCTAGAGTATCATCC--Aggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgAGGCCAG---TATA----AAT--TAATT---GCTAGATTATCATTC--AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTATTTATT--TTAA--------------GTTTTCGG---------GTTTTTTTTAT-AA------AATGAA---------ATGAAAAT-AAAA--AGGGTTT-GG-GCAGCATGAAAATTAGaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|6 : ttAGGCCGT---AATA----GAT--TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|19 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggttAGGCCAT---TATA----AAT--TAATT---GCTAGATTCTCAT
gi|17 : ttAGGCCAT---TATAAAGTAAT--TAATTAAAGCTAGATT-CCATCC--AAATTTCT-CTTaaaaaaaatttt
gi|3 : ttAAT--ATTTT-TTTTATGAAAAT-AAAAATGGT--TG-GG-GCGGCATGAAAATTAGGG
gi|9 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaTTTATATGAAAATAAAAA--GGA--TCAGG-GCGGCATggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAGAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 4444444 444444 222 11 11 333333333333333333333333333 44444444444 222222 222222 5555555555555555555 2 2 11 11 111 1 66666666666666666666666666666666666 1111111111111111111111111111111111111111 2
lowQualScore : 3 3333333 1 666666 777 33 1 3 11 99 3 333333333333333333333333333 22 1 1 0 2 1 2 1 6 66666666666 444444 4 0 888888 3 2222222222222222222 1 3 3 7 1 1 1 3 11 3 2 33 0 5555 2 444 3 333 55 5 5 66 4 66 1 1 1 11111111111111111111111111111111111 4444444444444444444444444444444444444444 0 4 8
lowQualScore : . ....... . ...... ... .. . . .. .. . ........................... .. . . . . . . . . ........... ...... . . ...... . ................... . . . . . . . . .. . . .. . .... . ... . ... .. . . .. . .. . . . ................................... ........................................ . . .
lowQualScore : 0 3333333 0 000000 555 88 0 2 55 22 3 222222222222222222222222222 00 0 7 2 2 0 5 0 4 22222222222 555555 0 2 888888 7 7777777777777777777 0 7 7 3 0 0 0 2 00 2 5 66 8 3333 5 777 4 444 55 0 0 99 2 99 7 8 0 11111111111111111111111111111111111 7777777777777777777777777777777777777777 8 0 0
consensus : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATT--AAA--ATNACGACTTGAT--ATTAACC--TN--T-AATAAAGNAGT---CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGNCTNA--C-AGTC-AAGGCC-CCCTCCANCAAT-AAAAC-TGGATATGCCATATATAANCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGCG--GGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTAT-------------------ATATTTTTTAAT-------TTTATGAAAATAAAAAGGGTC-GG-GCGGCATGAAAATTAGGG
Reference ( family-1064 ) : NNAGATACTTGTATAA-------TATGAAANATGGTNNAAAT---AAA--ATNACGACTNGAT--ATTNACC--TN--T-ANTAAAGNAGT---CA-G-GGTCNTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGATCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGAATCNCGCTCGCTCCAAANACTTTATATGAGA------C----AGTTT-CC--GGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGGCTNACNCGANTCTAAGGCC-CCCTCCANCAATAAAAACATGGATATNCCANATATAANCTGAAAT-NTGTTAAAAATAGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGCG--GGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTCGA-TG-------GNTTTTTTTAT-------------------ANATTTTTTAATA------TTTATGAAAATAAAAAGGGTC-GG-GCGGCATGAAAATTAGGG
gi|1 : AAATACTTGTCTGACTGGACATGTGAAATA----AAAAATT--AAA--ATAATGACCAGAT--ATTAACT--TC--TCAATAAAGAAGT---CA-G-GGTCATCCGTGGCCAAGTGGTCTAAGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGCTCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTCTGAATC-AGTC--AGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGCG-TTAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATTC--AAATTTTTCT--TAAAAACGG-AGA--GGGTG--GGAGGATTTTATTTTTTATTTAAAAAAGTTTTT---GATGTTTTTGA-TGTTTTTTTGTTTTTTTTAT--------------------TATTTTTTAATATTTTTTTTTATGAAAAT-AAAAGGGTC-GG-GCAGCATGAAAATGAGGG
gi|10 : aaTATGGTCAGTATA----AAG-TAATT---GCTAGATAA-----C--GA---TTTCT--TTAAAA-GG-AGA--AGG-G--GGAGGA-TTTGTTTTTTATATTTG-----TTTT---
gi|11 : GAT--GTTAACT--TGATT-ATTACAGTACTAAACA-G-GGTCCTCTTTGGCTGAGTGGTCCAATACATCATCTCATGGTCACTTtt
gi|12 : ca--TTAGGCCCGTTATA----A-T-TAATT---GCTTGATTCTCATCC--GATTTTTTCT--AAAAAA-----------GCG-----GGATTTTTTTTTTTAT
gi|13 : CAAACA--TTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAG
gi|14 : ctAAGATCACAATA----AAT-TAAAT---GCTAGATTTCCATCCCTGAACTTTT-T--TAAatt
gi|15 : tcagtgcggcC--TTGAGGTCATTATA----AAT-TAAT--------GAT---CATCC--AAATTTTCTT--CAAAAG-GG-GGA--GTGTT--AGAGGtgcagatat
gi|16 : TGAGGCCATAATA----AAC-TC-------CTAGATTTTCATCC---AACTTTATT--TCAAAA-CA-GAA--GGTTG--GG
gi|17 : AGGCCATTATAAAGTAAT-TAATTAAAGCTAGATT-CCATCC--AAATTTCTCT--T
gi|18 : ttTCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAG
gi|19 : AGGCCATTATA----AAT-TAATT---GCTAGATTCTCATac
gi|2 : ttAGATACTTGTATAA-------TATGAAATATGGTACAAAT---AACTCATTACAAC---AC--AT--ACCGTTC--T-AATA--GCAATTG-CA-G-GGTACACCGTGGCCGAATGGTCTACGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGCTCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGATTC-----ATTCTAAGGCC-CCCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTA-A----AATATAATaaaaaaaatttt
gi|20 : gattcgacagtttcttaatgtcttatcatat--TTAAG-CCATTATA----AAT-TAATT---GCTAGATTATCATTT--TCATTTTTaataattacaagagaggctacggcacatacaatatg
gi|21 : aAGTGGTCTAAGGTCCCATCTCAAGATCACTTACCTCTCACa
gi|3 : AACTGAAGT-GTGTCAAAA-TA-----TAAGGATATTATA----AAT-TAATT---GCTAGATTATTATAC--AAAATTTTCT--TAAAAACGG-GGA--GGGCA--GGAGGATTT--TTTTTCATTTTTA------------A--AATTTTGACTG---------TTTTTAAATAAAAAAAAACAAACAAAAAATATTTTT-----------TTTATGAAAATAAAAATGGTTGGG-GCGGCATGAAAATTAGGGt
gi|3 : aatagcactggtacaacacAGGCAATAATA----AAT-TAATT---GCTAGAGTATCATCC--ggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|4 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgt---AAA--ATGACG-CTTGAT--ATTAA-----------ATAAAAATGA---CA-TTGATTGACAGTGGTTGA----TCATGGGCGT-GTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGGTCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTACACGAGTC-A----------CCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGGC--aatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|5 : ataAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--AAATTTTTCT--TAAAAATGG-GGA--GGGCG--GGAGGATTTTATTTTTTATTTTCA-----TTTTTTAA--ATTTTTGA-TG-------GGTTTTTTTAT-------------------ATATTTTTTAA----------TATGAAAATAAAAAGGGTC-AGTGCGGCATTAAAATTAGGGgttga
gi|5 : tAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATCC--CAAggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAGGCCAGTATA----AAT-TAATT---GCTAGATTATCATTC---AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTATTT---ATTTTAA---------------GTTTTCG---G-------GTTTTTTTTAT-------------------AAAATG---AA-----------ATGAAAATAAAAAGGGTTTGG-GCAGCATGAAAATTAGtccg
gi|6 : ttAGGCCGTAATA----GAT-TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|7 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggtt-------TATTAAAGA----CAAAATTAAAAA--GTTATGATTTGATTGCTTTACC--TA--T---TAAAGCAGT---C--------CTCAGTGGCCGAATAGTTTAAAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCTCATGCAGTCCAAACATTTTGTA
gi|8 : --ATTTACC--TT--TCACT---GAGGT---CATG-GGTCCTTCATGGGCAAGTTGTCCAAGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCCaacaagaaaat
gi|9 : AATT------TATATGAAAATAAAAAGGATCAGG-GCGGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 4444444 2222 222222 222222222222222222222222222222222 44444444444 22222 222222 33333333333333333 1 1 1 1 11 11 111 1 111 55555555555555555 3333333333333 00000000000000000000000000000000000000000 1
lowQualScore : 1 3333333 8888 9 222222 1 0 44 888888888888888888888888888888888 1 1 1 0 1 2 0 1 1 6 66666666666 22222 1 0 888888 1 55555555555555555 1 0 0 5 666 9 0 3 00 3 2 33 0 5555 2 444 3 333 55 5 5 66 111 1 1 44444444444444444 8888888888888 99999999999999999999999999999999999999999 0 8 6 8
lowQualScore : . ....... .... . ...... . . .. ................................. . . . . . . . . . . ........... ..... . . ...... . ................. . . . . ... . . . .. . . .. . .... . ... . ... .. . . .. ... . . ................. ............. ......................................... . . . .
lowQualScore : 0 3333333 3333 8 222222 0 8 88 777777777777777777777777777777777 0 0 7 2 1 2 2 0 0 4 22222222222 55555 0 2 888888 0 33333333333333333 0 0 0 5 000 8 8 2 22 2 5 66 8 3333 5 777 4 444 55 0 0 99 111 7 8 77777777777777777 2222222222222 55555555555555555555555555555555555555555 8 0 0 0
consensus : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAG-AGT--CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGACT-A--CA-TC-GAG-C-CCCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
Reference ( family-1064 ) : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGNAGT--CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGNCTNA--CAGTC-AAGGCCCCCTCCANCAAT-AAAAC-TGGATATGCCATATATAANCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
gi|1 : AAATACTTGTCTGACTGGACATGTGAAATA----AAAAATTAAA---A--TAATGACCAGAT--ATTAACT--TCTCAATAAAGAAGT--CA-G-GGTCATCCGTGGCCAAGTGGTCTAAGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGCTCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTCTGAATCAGTC-AGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGCG-TTAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATTC--AAATTTTTCT--TAAAAACGG-AGA--GGGT--GGGAGGATTTTATTTTTTATTTAAAAAAGTTTTT---GATGTTTTTGA-TGTTTTTTTGTTTTTTTTAT--------------------TATTTTTTAATATTTTTTTT-TATGAAAAT-AAAAGGG-TC-GG-GCAGCATGAAAATGAGGG
gi|10 : aaTATGGTCAGTATA----AAG-TAATT---GCTAGATAA-----C--GA---TTTCT--TTAAAA-GG-AGA--AGG---GGGAGGA-TTTGTTTTTTATATTTG-----TTTT---
gi|11 : ACTTGATT-ATTA--C--AGT-ACTAAA-------CA-G-GGTCCTCTTTGGCTGAGTGGTCCAATACATCATCTCATGGTCACTTtt
gi|12 : cagatgtta--TTAGGCCCGTTATA----A-T-TAATT---GCTTGATTCTCATCC--GATTTTTTCT--AAAAAA-----------GC--G---GGATTTTTTTTTTTAT
gi|13 : CAAACA--TTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAGATT
gi|14 : ctAAGATCACAATA----AAT-TAAAT---GCTAGATTTCCATCCCTGAACTTTT-T--TAA
gi|15 : tcagtgcggcC--TTGAGGTCATTATA----AAT-TAAT--------GAT---CATCC--AAATTTTCTT--CAAAAG-GG-GGA--GTGT--TAGAGGtgcagatat
gi|16 : TGAGGCCATAATA----AAC-TC-------CTAGATTTTCATCC---AACTTTATT--TCAAAA-CA-GAA--GGTT--GGG
gi|17 : AGGCCATTATAAAGTAAT-TAATTAAAGCTAGATT-CCATCC--AAATTTCTCT--T
gi|18 : ttTCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAG
gi|19 : AGGCCATTATA----AAT-TAATT---GCTAGATTCTCATac
gi|2 : ttAGATACTTGTATAA-------TATGAAATATGGTACAAAT--AACTCA--TTACAAC---AC--AT--ACCGTTCT-AATA--GCAATTGCA-G-GGTACACCGTGGCCGAATGGTCTACGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGCTCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGATT----CATTCTAAGGCCCCCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTA-A----AATATAATaaaaaaaatttt
gi|20 : gattcgacagtttcttaatgtcttatcatat--TTAAG-CCATTATA----AAT-TAATT---GCTAGATTATCATTT--TCATTTTTaataattacaagagaggctacggcacatacaatatg
gi|21 : aAGTGGTCTAAGGTCCCATCTCAAGATCACTTACCTCTCACa
gi|3 : AAT-AGCAC-TGG-TA---CA-ACACAA-CTGAAGT-GTGTCAAAA-TA-----TAAGGATATTATA----AAT-TAATT---GCTAGATTATTATAC--AAAATTTTCT--TAAAAACGG-GGA--GGGC--AGGAGGATTT--TTTTTCATTTTTA------------A--AATTTTGACTG---------TTTTTAAATAAAAAAAAACAAACAAAAAATATTTT-----------TTT-TATGAAAATAAAAATGG-TTGGG-GCGGCATGAAAATTAGGGt
gi|3 : AGGCAATAATA----AAT-TAATT---GCTAGAGTATCATCC--ggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|4 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgtATAAAA---A--TGACG-CTTGAT--ATTAA---------ATAAAAATGA--CA-TTGATTGACAGTGGTTGA----TCATGGGCGT-GTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGGTCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTA--CA--C-GAG----TCACCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGGC--aatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|5 : AGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--AAATTTTTCT--TAAAAATGG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTCA-----TTTTTTAA--ATTTTTGA-TG-------GGTTTTTTTATA-------------------TATTTTTTAA-----------TATGAAAATAAAAAGGG-TC-AGTGCGGCATTAAAATTAGGGgttga
gi|5 : tAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATCC--CAAggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAGGCCAGTATA----AAT-TAATT---GCTAGATTATCATTC---AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTA---TTTATTTTA-------------A--GTTTTCG---G-------GTTTTTTTTATA--------------------A------AA-------TGA-AATGAAAATAAAAAGGGTTT-GG-GCAGCATGAAAATTAGtccg
gi|6 : ttAGGCCGTAATA----GAT-TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|7 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggtt-------TATTAAAGA----CAAAATTAAA---AAGTTATGATTTGATTGCTTTACC--TAT---TAAAGCAGT--C--------CTCAGTGGCCGAATAGTTTAAAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCTCATGCAGTCCAAACATTTTGTA
gi|8 : --ATTTACC--TTT-CACTGAG--GT--CATG-GGTCCTTCATGGGCAAGTTGTCCAAGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCCaacaagaaaat
gi|9 : AA-------TTTATATGAAAATAAAAAGGA-TCAGG-GCGGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 4444444 2222 222222 444444444444444444444444444 44444444444 22222 222222 7777777777777777777777777 1 1 1 11 11 111 1 111 55555555555555555 3333333333333 00000000000000000000000000000000000000000 1
lowQualScore : 1 3333333 8888 9 222222 1 0 44 333333333333333333333333333 777 1 1 0 1 2 0 1 1 6 66666666666 22222 1 0 888888 1 4444444444444444444444444 1 0 0 5 666 9 55 00 3 2 33 0 5555 2 444 3 333 55 5 5 66 111 1 1 44444444444444444 8888888888888 99999999999999999999999999999999999999999 0 8 6 8
lowQualScore : . ....... .... . ...... . . .. ........................... ... . . . . . . . . . ........... ..... . . ...... . ......................... . . . . ... . .. .. . . .. . .... . ... . ... .. . . .. ... . . ................. ............. ......................................... . . . .
lowQualScore : 0 3333333 3333 8 222222 0 8 88 555555555555555555555555555 555 0 7 2 1 2 2 0 0 4 22222222222 55555 0 2 888888 2 0000000000000000000000000 0 0 0 5 000 8 88 22 2 5 66 8 3333 5 777 4 444 55 0 0 99 111 7 8 77777777777777777 2222222222222 55555555555555555555555555555555555555555 8 0 0 0
consensus : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGA-GT-CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
Reference ( family-1064 ) : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGA-GT-CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TACAT--CGAG--CC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
gi|1 : AAATACTTGTCTGACTGGACATGTGAAATA----AAAAATTAAA---A--TAATGACCAGAT--ATTAACT--TCTCAATAAAGAAGT-CA-G-GGTCATCCGTGGCCAAGTGGTCTAAGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGCTCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTC-TGAAT--C-AG--TCAGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGCG-TTAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATTC--AAATTTTTCT--TAAAAACGG-AGA--GGGT--GGGAGGATTTTATTTTTTATTTAAAAAAGTTTTT---GATGTTTTTGA-TGTTTTTTTGTTTTTTTTAT--------------------TATTTTTTAATATTTTTTTT-TATGAAAAT-AAAAGGG-TC-GG-GCAGCATGAAAATGAGGG
gi|10 : aaTATGGTCAGTATA----AAG-TAATT---GCTAGATAA-----C--GA---TTTCT--TTAAAA-GG-AGA--AGG---GGGAGGA-TTTGTTTTTTATATTTG-----TTTT---
gi|11 : ACTTGATT-ATTA--C--AGT-ACTAAA------CA-G-GGTCCTCTTTGGCTGAGTGGTCCAATACATCATCTCATGGTCACTTtt
gi|12 : cagatgtta--TTAGGCCCGTTATA----A-T-TAATT---GCTTGATTCTCATCC--GATTTTTTCT--AAAAAA-----------GC--G---GGATTTTTTTTTTTAT
gi|13 : CAAACA--TTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAGAT-T
gi|14 : ctAAGATCACAATA----AAT-TAAAT---GCTAGATTTCCATCCCTGAACTTTT-T--TAA
gi|15 : tcagtgcggcC--TTGAGGTCATTATA----AAT-TAAT--------GAT---CATCC--AAATTTTCTT--CAAAAG-GG-GGA--GTGT--TAGAGGtgcagatat
gi|16 : TGAGGCCATAATA----AAC-TC-------CTAGATTTTCATCC---AACTTTATT--TCAAAA-CA-GAA--GGTT--GGG
gi|17 : AGGCCATTATAAAGTAAT-TAATTAAAGCTAGATT-CCATCC--AAATTTCTCT--T
gi|18 : ttTCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAG
gi|19 : AGGCCATTATA----AAT-TAATT---GCTAGATTCTCATac
gi|2 : ttAGATACTTGTATAA-------TATGAAATATGGTACAAAT--AACTCA--TTACAAC---AC--AT--ACCGTTCT-AATAGCAA-TTGCA-G-GGTACACCGTGGCCGAATGGTCTACGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGCTCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGAT-T-CATTCTAAGGCCC-------CCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTA-A----AATATAATaaaaaaaatttt
gi|20 : gattcgacagtttcttaatgtcttatcatat--TTAAG-CCATTATA----AAT-TAATT---GCTAGATTATCATTT--TCATTTTTaataattacaagagaggctacggcacatacaatatg
gi|21 : aAGTGGTCTAAGGTCCCATCTCAAGATCACTTACCTCTCACa
gi|3 : AAT-AGCAC-TGG-TA---CA-ACACAAC-TGAAGT-GTGTCAAAA-TA-----TAAGGATATTATA----AAT-TAATT---GCTAGATTATTATAC--AAAATTTTCT--TAAAAACGG-GGA--GGGC--AGGAGGATTT--TTTTTCATTTTTA------------A--AATTTTGACTG---------TTTTTAAATAAAAAAAAACAAACAAAAAATATTTT-----------TTT-TATGAAAATAAAAATGG-TTGGG-GCGGCATGAAAATTAGGGt
gi|3 : AGGCAATAATA----AAT-TAATT---GCTAGAGTATCATCC--ggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|4 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgtATAAAA---A--TGACG-CTTGAT--ATTAA---------ATAAAAATGA-CA-TTGATTGACAGTGGTTGA----TCATGGGCGT-GTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGGTCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTACA---CGAG--TC-------A--CCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGGC--aatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|5 : AGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--AAATTTTTCT--TAAAAATGG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTCA-----TTTTTTAA--ATTTTTGA-TG-------GGTTTTTTTATA-------------------TATTTTTTAA-----------TATGAAAATAAAAAGGG-TC-AGTGCGGCATTAAAATTAGGGgttga
gi|5 : tAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATCC--CAAggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAGGCCAGTATA----AAT-TAATT---GCTAGATTATCATTC---AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTA---TTTATTTTA-------------A--GTTTTCG---G-------GTTTTTTTTATA--------------------A------AA-------TGA-AATGAAAATAAAAAGGGTTT-GG-GCAGCATGAAAATTAGtccg
gi|6 : ttAGGCCGTAATA----GAT-TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|7 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggtt-------TATTAAAGA----CAAAATTAAA---AAGTTATGATTTGATTGCTTTACC--TAT---TAAAG-----CA-G---TCCTCAGTGGCCGAATAGTTTAAAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCTCATGCAGTCCAAACATTTTGTA
gi|8 : --ATTTACC--TTT-CACTGAG--GT-CATG-GGTCCTTCATGGGCAAGTTGTCCAAGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCCaacaagaaaat
gi|9 : AA-------TTTATATGAAAATAAAAAGGA-TCAGG-GCGGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 4444444 2222 222222 444444444444444444444444444 44444444444 22222 222222 6666666666666666666666666 1 1 1 11 11 111 1 111 55555555555555555 3333333333333 00000000000000000000000000000000000000000 1
lowQualScore : 1 3333333 8888 9 222222 1 0 44 333333333333333333333333333 777 1 1 0 1 2 0 1 1 6 66666666666 22222 1 0 888888 1 9999999999999999999999999 1 0 0 5 666 9 55 00 3 2 33 0 5555 2 444 3 333 55 5 5 66 111 1 1 44444444444444444 8888888888888 99999999999999999999999999999999999999999 0 8 6 8
lowQualScore : . ....... .... . ...... . . .. ........................... ... . . . . . . . . . ........... ..... . . ...... . ......................... . . . . ... . .. .. . . .. . .... . ... . ... .. . . .. ... . . ................. ............. ......................................... . . . .
lowQualScore : 0 3333333 3333 8 222222 0 8 88 555555555555555555555555555 555 0 7 2 1 2 2 0 0 4 22222222222 55555 0 2 888888 2 0000000000000000000000000 0 0 0 5 000 8 88 22 2 5 66 8 3333 5 777 4 444 55 0 0 99 111 7 8 77777777777777777 2222222222222 55555555555555555555555555555555555555555 8 0 0 0
consensus : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGA-GT-CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
Reference ( family-1064 ) : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGA-GT-CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
gi|1 : AAATACTTGTCTGACTGGACATGTGAAATA----AAAAATTAAA---A--TAATGACCAGAT--ATTAACT--TCTCAATAAAGAAGT-CA-G-GGTCATCCGTGGCCAAGTGGTCTAAGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGCTCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTC-TGAAT--C-AG--TCAGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGCG-TTAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATTC--AAATTTTTCT--TAAAAACGG-AGA--GGGT--GGGAGGATTTTATTTTTTATTTAAAAAAGTTTTT---GATGTTTTTGA-TGTTTTTTTGTTTTTTTTAT--------------------TATTTTTTAATATTTTTTTT-TATGAAAAT-AAAAGGG-TC-GG-GCAGCATGAAAATGAGGG
gi|10 : aaTATGGTCAGTATA----AAG-TAATT---GCTAGATAA-----C--GA---TTTCT--TTAAAA-GG-AGA--AGG---GGGAGGA-TTTGTTTTTTATATTTG-----TTTT---
gi|11 : ACTTGATT-ATTA--C--AGT-ACTAAA------CA-G-GGTCCTCTTTGGCTGAGTGGTCCAATACATCATCTCATGGTCACTTtt
gi|12 : cagatgtta--TTAGGCCCGTTATA----A-T-TAATT---GCTTGATTCTCATCC--GATTTTTTCT--AAAAAA-----------GC--G---GGATTTTTTTTTTTAT
gi|13 : CAAACA--TTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAGAT-T
gi|14 : ctAAGATCACAATA----AAT-TAAAT---GCTAGATTTCCATCCCTGAACTTTT-T--TAA
gi|15 : tcagtgcggcC--TTGAGGTCATTATA----AAT-TAAT--------GAT---CATCC--AAATTTTCTT--CAAAAG-GG-GGA--GTGT--TAGAGGtgcagatat
gi|16 : TGAGGCCATAATA----AAC-TC-------CTAGATTTTCATCC---AACTTTATT--TCAAAA-CA-GAA--GGTT--GGG
gi|17 : AGGCCATTATAAAGTAAT-TAATTAAAGCTAGATT-CCATCC--AAATTTCTCT--T
gi|18 : ttTCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAG
gi|19 : AGGCCATTATA----AAT-TAATT---GCTAGATTCTCATac
gi|2 : ttAGATACTTGTATAA-------TATGAAATATGGTACAAAT--AACTCA--TTACAAC---AC--AT--ACCGTTCT-AATAGCAA-TTGCA-G-GGTACACCGTGGCCGAATGGTCTACGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGCTCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGAT-T-CATTCTAAGGCCC-------CCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTA-A----AATATAATaaaaaaaatttt
gi|20 : gattcgacagtttcttaatgtcttatcatat--TTAAG-CCATTATA----AAT-TAATT---GCTAGATTATCATTT--TCATTTTTaataattacaagagaggctacggcacatacaatatg
gi|21 : aAGTGGTCTAAGGTCCCATCTCAAGATCACTTACCTCTCACa
gi|3 : AAT-AGCAC-TGG-TA---CA-ACACAAC-TGAAGT-GTGTCAAAA-TA-----TAAGGATATTATA----AAT-TAATT---GCTAGATTATTATAC--AAAATTTTCT--TAAAAACGG-GGA--GGGC--AGGAGGATTT--TTTTTCATTTTTA------------A--AATTTTGACTG---------TTTTTAAATAAAAAAAAACAAACAAAAAATATTTT-----------TTT-TATGAAAATAAAAATGG-TTGGG-GCGGCATGAAAATTAGGGt
gi|3 : AGGCAATAATA----AAT-TAATT---GCTAGAGTATCATCC--ggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|4 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgtATAAAA---A--TGACG-CTTGAT--ATTAA---------ATAAAAATGA-CA-TTGATTGACAGTGGTTGA----TCATGGGCGT-GTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGGTCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTACA---CGAG--TC-------A--CCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGGC--aatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|5 : AGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--AAATTTTTCT--TAAAAATGG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTCA-----TTTTTTAA--ATTTTTGA-TG-------GGTTTTTTTATA-------------------TATTTTTTAA-----------TATGAAAATAAAAAGGG-TC-AGTGCGGCATTAAAATTAGGGgttga
gi|5 : tAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATCC--CAAggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAGGCCAGTATA----AAT-TAATT---GCTAGATTATCATTC---AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTA---TTTATTTTA-------------A--GTTTTCG---G-------GTTTTTTTTATA--------------------A------AA-------TGA-AATGAAAATAAAAAGGGTTT-GG-GCAGCATGAAAATTAGtccg
gi|6 : ttAGGCCGTAATA----GAT-TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|7 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggtt-------TATTAAAGA----CAAAATTAAA---AAGTTATGATTTGATTGCTTTACC--TAT---TAAAG-----CA-G---TCCTCAGTGGCCGAATAGTTTAAAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCTCATGCAGTCCAAACATTTTGTA
gi|8 : --ATTTACC--TTT-CACTGAG--GT-CATG-GGTCCTTCATGGGCAAGTTGTCCAAGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCCaacaagaaaat
gi|9 : AA-------TTTATATGAAAATAAAAAGGA-TCAGG-GCGGCAT
blockSeqs : A . TGGT A CTCA T TT ATACCGTTCTAATAGCAATTG TT T G G A C C C ATGTAAC CCCT A GAATAT A TCATTCTAAGGCCCCC T A A A TTC T CT CA A G CT AAGT A AAA A CTG CA C A TG TGA T G CATTTTTTAA ATGGG AAAAAAAAACAAACAAAAAATATTTTTTT T G T
blockSeqs : . . T AAG G TT ATTTACCTTTCACTGAGGT TG C A G G G A T CTGAT GCC A . A TTACACGAGTCA A . . . TGT A T C A G . . . . C G . T . . C T T TAA ACTG ATATTTTTTAA . A .
blockSeqs : . A T TT TGCTTTACCTATTAAAG G A G G T G T T A G T . G . . . . . C G . . . . . . T G . . . . T T A AA GGT AAAATGA . . .
blockSeqs : . TATTACAGTACTAAA G A A A G C . . . . . T A . . . . T C A . . .
blockSeqs : ATTAAATAAAAATGA G C G A A . . . . C A . . . . C . .
blockSeqs : . A . . . . A T . . . . C
blockSeqs : . . . . A A . . . . .
blockSeqs : . . . A A .
blockSeqs : . . . A C .
blockSeqs : . . . A .
blockSeqs : . . . A .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : ATTACCNTACTAATGGG********** **
originalCons : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT--ATTAACC--TNT-AATAAAGA-GT-CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
finalCons : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGATATTACCNTACTAATGGG----------CA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 4444444 2222 222222 11111 11111 66666666666666 44444444444 22222 222222 6666666666666666666666666 1 1 1 11 11 111 1 111 55555555555555555 3333333333333 00000000000000000000000000000000000000000 1
lowQualScore : 1 3333333 8888 9 222222 1 0 44 55555 00000 11111111111111 777 1 1 0 1 2 0 1 1 6 66666666666 22222 1 0 888888 1 9999999999999999999999999 1 0 0 5 666 9 55 00 3 2 33 0 5555 2 444 3 333 55 5 5 66 111 1 1 44444444444444444 8888888888888 99999999999999999999999999999999999999999 0 8 6 8
lowQualScore : . ....... .... . ...... . . .. ..... ..... .............. ... . . . . . . . . . ........... ..... . . ...... . ......................... . . . . ... . .. .. . . .. . .... . ... . ... .. . . .. ... . . ................. ............. ......................................... . . . .
lowQualScore : 0 3333333 3333 8 222222 0 8 88 99999 22222 33333333333333 555 0 7 2 1 2 2 0 0 4 22222222222 55555 0 2 888888 2 0000000000000000000000000 0 0 0 5 000 8 88 22 2 5 66 8 3333 5 777 4 444 55 0 0 99 111 7 8 77777777777777777 2222222222222 55555555555555555555555555555555555555555 8 0 0 0
consensus : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT-A---TTACCNT--ACTAATG-----G-----NCA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
Reference ( family-1064 ) : NNAGATACTTGTNTGA-------TATGAAATA----AAAAATTAAA---A--TNACGACTTGAT-A---TTACCNT--ACTAATG-----G-----GCA-G-GGTCCTCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGGTCACTTACCTCTCACCGCTGAGGTCGTAGGTTCGGGTCCCGCTCGNTCCAAANACTTTATATGAGA------C----AGTTT-CC--AGTNACTTGCGGAAGGATGGTGGTTCTAC------TCAGAC-TGCAT--CGAG--TC-------CCTCCANCAAT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGC--TTAAGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--GAATTTTTCT--TAAAAA-GG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTNA-----TTTT---A--GTTTTTGA-TG-------GTTTTTTTTATA-------------------TATTTTTTAA-------TTT-TATGAAAATAAAAAGGG-TC-GG-GCGGCATGAAAATTAGGG
gi|1 : AAATACTTGTCTGACTGGACATGTGAAATA----AAAAATTAAA---A--TAATGACCAGAT-A---TTAACTT--CTCAATAAAGAAG-----TCA-G-GGTCATCCGTGGCCAAGTGGTCTAAGGCGGCATCTCAAGATCACTTACCTCTCACCACTAAGGTCGTAGGTTCGGGTCCTGCTTGCTCCAAAAACTTTATATGAGA------C----AGTTT-CC--AGTTACTTGCGGATGGACGGTGGTTCTAC------TCAGTC-TGAAT--C-AG--TCAGGTCGTCCTCCACCAGT-AAAAC-TGGATATGCCATATATAACCTGAAAT-GTGTTAAAAATGGCG-TTAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATTC--AAATTTTTCT--TAAAAACGG-AGA--GGGT--GGGAGGATTTTATTTTTTATTTAAAAAAGTTTTT---GATGTTTTTGA-TGTTTTTTTGTTTTTTTTAT--------------------TATTTTTTAATATTTTTTTT-TATGAAAAT-AAAAGGG-TC-GG-GCAGCATGAAAATGAGGG
gi|10 : aaTATGGTCAGTATA----AAG-TAATT---GCTAGATAA-----C--GA---TTTCT--TTAAAA-GG-AGA--AGG---GGGAGGA-TTTGTTTTTTATATTTG-----TTTT---
gi|11 : ACTTGATTA---TTACAGT--ACTAA-------------ACA-G-GGTCCTCTTTGGCTGAGTGGTCCAATACATCATCTCATGGTCACTTtt
gi|12 : cagatgtta--TTAGGCCCGTTATA----A-T-TAATT---GCTTGATTCTCATCC--GATTTTTTCT--AAAAAA-----------GC--G---GGATTTTTTTTTTTAT
gi|13 : CAAACA--TTACATGAGAATGTAAC----ATTTT-CCCTAGTAACTTGTTAAACAATGGTGGTTCTAC------TCAGAT-T
gi|14 : ctAAGATCACAATA----AAT-TAAAT---GCTAGATTTCCATCCCTGAACTTTT-T--TAA
gi|15 : tcagtgcggcC--TTGAGGTCATTATA----AAT-TAAT--------GAT---CATCC--AAATTTTCTT--CAAAAG-GG-GGA--GTGT--TAGAGGtgcagatat
gi|16 : TGAGGCCATAATA----AAC-TC-------CTAGATTTTCATCC---AACTTTATT--TCAAAA-CA-GAA--GGTT--GGG
gi|17 : AGGCCATTATAAAGTAAT-TAATTAAAGCTAGATT-CCATCC--AAATTTCTCT--T
gi|18 : ttTCTACGATGTCGTCTTAAGGTCATTTACCTGTCACTACGGAGGTTATAG
gi|19 : AGGCCATTATA----AAT-TAATT---GCTAGATTCTCATac
gi|2 : ttAGATACTTGTATAA-------TATGAAATATGGTACAAAT--AACTCA--TTACAAC---AC-A---T-ACCGT--TCTAATA-----GCAATTGCA-G-GGTACACCGTGGCCGAATGGTCTACGGTTTCGTCTCAAGGTCACTTACCTCTCACCGTTAAGGTCGTAGGCTCGAATCCCGCTCGCTCTAAAATCTTTATGTGAGG------A----AGTTTGCC--AGTAACTTGCGGAAGAATGGTGGTTCTAC------TCAGAT-T-CATTCTAAGGCCC-------CCTCCATCAATAAAAAC-TGGATATTCCATATATAACCTGAAAT-CTGTTAAAAATAGCCTTTAACACCATTA-A----AATATAATaaaaaaaatttt
gi|20 : gattcgacagtttcttaatgtcttatcatat--TTAAG-CCATTATA----AAT-TAATT---GCTAGATTATCATTT--TCATTTTTaataattacaagagaggctacggcacatacaatatg
gi|21 : aAGTGGTCTAAGGTCCCATCTCAAGATCACTTACCTCTCACa
gi|3 : AAT-AGCAC-TGG-TA---CA-ACACAAC-TGAAGT-GTGTCAAAA-TA-----TAAGGATATTATA----AAT-TAATT---GCTAGATTATTATAC--AAAATTTTCT--TAAAAACGG-GGA--GGGC--AGGAGGATTT--TTTTTCATTTTTA------------A--AATTTTGACTG---------TTTTTAAATAAAAAAAAACAAACAAAAAATATTTT-----------TTT-TATGAAAATAAAAATGG-TTGGG-GCGGCATGAAAATTAGGGt
gi|3 : AGGCAATAATA----AAT-TAATT---GCTAGAGTATCATCC--ggcaggcgtggatgatactctagcaattaatttattattgcctaatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|4 : aatagcactggtacaacacaactgaagtgtgtcaaaatataaggatattataaattaattgctagattattatacaaaattttcttaaaaacggggagggcaggaggattttttttcatttttaaaattttgactgtttttaaataaaaaaaaacaaacaaaaaatattttttttatgaaaataaaaatggttggggcggcatgaaaattagggggcaggcgtATAAAA---A--TGACG-CTTGAT-A---TTAA-AT--AAAAATG-----A------CA-TTGATTGACAGTGGTTGA----TCATGGGCGT-GTTTCGAGAGCACC-AAATCTCATTTGTGACATCGTTGGTTCGGGTCACGCTTGGTCCAGATATTTCAAATGAGA------CTGATAGTGT--G--GGTTACCGACAGAAGGATGATGCTTATACGAATATTCAAGCTTACA---CGAG--TC-------A--CCAATAAT-AAAATATGG---TGTCAAATATAAAC-AAAATCATCTTAAAAATGGC--aatggaaatatatttataaatatgaataacaaagctttgcgacacatttttct
gi|5 : AGGCCATTATA----AAT-TAATT---GCTAGATTATCATCC--AAATTTTTCT--TAAAAATGG-GGA--GGGC--GGGAGGATTTTATTTTTTATTTTCA-----TTTTTTAA--ATTTTTGA-TG-------GGTTTTTTTATA-------------------TATTTTTTAA-----------TATGAAAATAAAAAGGG-TC-AGTGCGGCATTAAAATTAGGGgttga
gi|5 : tAAGGCCATAATA----AAT-TAATT---GCTAGATTATCATCC--CAAggtggggttgggatgataatctagcaattaatttattatggcctttccg
gi|6 : taggccattataaattaattgctagattatcatccaaatttttcttaaaaatggggagggcgggaggattttattttttattttcattttttaaatttttgatgggtttttttatatattttttaatatgaaaataaaaagggtcagtgcggcattaaaattagggggtggggAGGCCAGTATA----AAT-TAATT---GCTAGATTATCATTC---AATTTTTTTCATAAAAA-GGAGGATGGGGTGAGGGAGGACTTTA---TTTATTTTA-------------A--GTTTTCG---G-------GTTTTTTTTATA--------------------A------AA-------TGA-AATGAAAATAAAAAGGGTTT-GG-GCAGCATGAAAATTAGtccg
gi|6 : ttAGGCCGTAATA----GAT-TAATT---GCTAGATacgatgggcggggaggttatctagcaattaatctattacggcct
gi|7 : ttaggccagtataaattaattgctagattatcattcaatttttttcataaaaaggaggatggggtgagggaggactttatttattttaagttttcgggttttttttataaaatgaaatgaaaataaaaagggtttgggcagcatgaaaattagacgatgggcggggaggtt-------TATTAAAGA----CAAAATTAAA---AAGTTATGATTTGAT-TGCTTTACC-T--ATTAA-------A-----GCA-G---TCCTCAGTGGCCGAATAGTTTAAAGCATCATCTCAAGATCCCTTAACTCTAACTGCTGAGGTCGTAGGTTAGAATCTCATGCAGTCCAAACATTTTGTA
gi|8 : ---TTACCTTTCACTGA-G-----G-----TCATG-GGTCCTTCATGGGCAAGTTGTCCAAGATGACGT-----------TTACCTTTCACCACTGAGGTCATGGGTCCaacaagaaaat
gi|9 : atAA-------TTTATATGAAAATAAAAAGGA-TCAGG-GCGGCAT