lowQualScore : 1 11 6666666666666666666666666666666666666666666666666666666666666666 1111111 11111 222 1 2222222222222
lowQualScore : 44 5 22 22 3333 22 0 3333 22 22 44 2222222222222222222222222222222222222222222222222222222222222222 1 4 4444 0000000 5 1 22 5 1 8888888888 1 333 2 55555 1 1 1 66666666 333 6 5 1 222 333 9999999 555 4 33333 222 2222 0 1 22 1 88888 222 1 1 1 6 22 66666666 1 6 5 66 3 1 222 2 22 8 1 5555 888888888 2 2222222222222
lowQualScore : .. . .. .. .... .. . .... .. .. .. ................................................................ . . .... ....... . . .. . . .......... . ... . ..... . . . ........ ... . . . ... ... ....... ... . ..... ... .... . . .. . ..... ... . . . . .. ........ . . . .. . . ... . .. . . .... ......... . .............
lowQualScore : 44 0 33 33 7777 55 5 9999 66 88 22 5555555555555555555555555555555555555555555555555555555555555555 9 6 0000 5555555 0 7 44 9 8 3333333333 9 333 8 33333 7 7 7 33333333 222 9 4 8 222 000 7777777 888 1 77777 777 4444 6 5 00 4 22222 888 6 6 7 5 44 33333333 7 0 2 11 5 7 888 0 33 4 6 6666 666666666 0 4444444444444
consensus : TTAG-CGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACT-GTTT-------CC-------C-TG--G-------------G--A--T----------T----------AAC-CAGTAC----TCGAGCACACCC------CATCTCCGCAAGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGCGG--TGAGAGACGAATGATAA-TG-AGA-CGCAATGT--------CGTATATCAATCATCAC---GGAGACTGTNGCC-GGGCGGG---GGATTCGAACTCACGACCCCTGGATTGATAGTCAGAC-G-----CG---TAAC-----CGACTGAGCTAA---TCGGGCCCGGC----TCAGCGGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CACAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTNGCC-GGGCGG-G---GGATTCGAACTCACG--ACCCCTGGATTGATAGTCAGACG-CG-TAACCG--------ACTGAGCTAATCGGGCCCGGC-T----A-GAAATACCGAAACC
Reference ( gi|2 ) : TTAA-CGTCATATTTATGC--CAT--CGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACT-TTTT-------TT-------C-TG--G-------------G--A--T----------T----------AAC-CAATAC----TCGAGCACACCC------CATCTCTGCAAGTAACTGA-TA--ACTTTTC-CAC----------TTGAAT-C---AGTGA--TCAGAGACGAATGATAA-TG-AGA-CACAATGT--------CGTATATCAATCATCAC---GGAAACTGTTGCC-GGACGGG---GGATTCGAACTCACGACCCCTGGATTGATAGTCAGAC-A-----CG---TAAC-----CGACTGAGCTAA---TCGGGCCCGGC----TCAGTGGT-GAG--A-GAT----GAATGA---TAA-TG-AGA-CACAACGTCGTA--T--------ATCAATCATC-ATGGAGACTGTTGCC-AGGCGG-G---GGATTCGAACTCACG--ACCTCTGGATTGATAGTCAGACG-CG-TAACCA--------ACTGAGCTAATCGGGCCCGGC-T----G-GAAATTTTGAAACCTGTCAACAAGGCATTGACCTTTGCCTCAGAATAATTCACTTATCAAGTTATTGAGTGCTTTTACATGACATAAAAACTGTCTTAAATTATTTTGCACTTAGTAGACATTCTATTCTA
gi|8 : TTAG-CGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACT-GTTT-------C--------C-TG--G-------------G--A--T----------T----------AAC-CAGTAC----TGGAGCACACCC------CATCTCCGCAAGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGTGG--TGAGAGACGAATGATAA-TG-AGA-CACAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-GGGCGGG---GGATTCGAACTCACGACCCCTGGATTGAAAGTCAGAC-G-----CG---TAAC-----CGACTGAGCTAA---TCGGGCCCGGC----TTA-TTGT-AAA--ATGAC----GAA
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAG-CATCATTTTTATGC--CAC--CGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACT-GTTT-------C--------C-TG--G-------------G--A--T----------T----------AAC-CAGTAC----TCGAGCACACCC------CGTCTCCGTAAGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGTGG--TGAGAGACGAATGATAA-TT-AGA-CACAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-GGGCGGG---GGATTCGAACTCACGACCCCTGGATTGATAGTCAGAC-G-----CG---TAAC-----CGACTGAGCTAA---TCGGGCCCGGC----Tat
gi|12 : tgattgattgattgaatatTTAA-CGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACT-GTTT-------C--------C-TG--A-------------G--A--T----------T----------AAC-CAGTAC----TCGAGCACACCC------CATCTCCGCATGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGCGG--TGAGAGACGAATGATAA-TG-AGA-CAAAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-GGGC-GG---GGATTCGAACTTACGACCCCTGGATTGATAGTCAGAC-G-----CG---TAAC-----CGACTGAGCTAA---TCGGGTCCGGC----Tacaagtaccaaaaccagctcgtatatataattcaagttatttttaaaaagctttgaaacaaacaagtaacactgcacgttttatcaaatattttaat
gi|6 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAG-CATCATCTTTATGC--CAT--CAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACT-GTTT----------------CGTG--G-------------G--A--T----------T----------AAC-CAGTAC----TCGAGCACAACC------CATCTCTGCAAGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGTGG--TGAGAGACGAATGATAA-TG-AGA-CACAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-AGGC-GG---AGATTCAAACTCACGACCCCTGGATTGATAGTCAGAA-G-----CG---TAAC-----CGACTGAGCTAA---TCGGGCCGGGC----Tttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|11 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTAAGTGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ATGAT----CAGTG-------------------TT-------TC-------C-TG--G-------------G--A--T----------T----------AAC-CAGTAC----TCGAGCACACCC------CATCTCCGCAAGTAACTGA-TA--ACTTTCC-CAC----------TTGAAT-C---AGCAG--TGAGAGACGAATGATAA-TG-AGA-CACAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-AGGT-GG---GGATTCGAACTCACGACCCCTGGATTGATAGTCAGAC-G-----CG---TAAC-----CAACTGAGCTAA---TCGGGCCCAGC----Tacggtaacaaagacaactccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|1 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaataTCAG-CGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACT-GTTT-------C--------C-TG--G-------------G--A--T----------A----------AAC-CAGTAC----TCGAGCACACCC------AATCTCCGCAAGTAACTGA-TA--ACTTTCT-GAC----------TCGAAT-C---AGCGG--TGAGAGACGAATGATAA-TG-AGA-CATAATGT--------CGTATATCAATCATCAC---GGAGACTGTTGCC-GG-TTGG---GGACTCGATCTCACGA-CCCTGGATTGATAGTCAGAC-G-----CT---TAAC-----CGACTGAGCTAA---TCGGGCCCTGC----T---TGTT-CAA--A-GA------GATTA---TAA-CA-AGatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|4 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTTAA-CGTAATTTTTATGC--CAT--CGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACT-GTTCCCTGGGATC-------C-TG--GAA-----------G--G--T----------T----------AAC-CAGTAC----TCGAGCACATCC------CATCTCCGCAAGTAACTGA-TA--ACTTTCC-CAT----------TTGAAT-C---AGCGG--TGAGAGACGAATGACAA-CG-AGA-CGCAATGT--------GGTATATCAACCGTCAC---GGAGATTGTGGTC-GGGC-GG---GGATTTTAATTCACGACCCCTGAGTTGATAGTCAGAC-G-----CGC--TAA------CGAATGGGCTAA---TCGGGCCCGGC----tttattcattgtgtttatcagtgaggtct
gi|16 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatacTTAG-TGTCATTTTTATGC--CAT--CGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACT-GTTT-------C--------C-TG--G-------------G--A--TCCTGAAAGGTT----------AAC-CAGTAC----TCAATCACATCC------TATCTCCGCAAGTAACTGA-TA--ACTT-------------------GAAT-C---AGCGG--TGAGAGATGAATGATAA-TG-AGA-CACAATGT--------CGCATATCAATCATCAT---TGAGACTGTTGTCAGGA--GG---GGATTTAAACTCACGACCCCTGGATTGATAGTCAGAC-G-----TG---TTAC-----CGACTAAGCTAA---TTGGGCCTGGC----Ta
gi|14 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAG-CGTCAT-TTTATGC--CAT--CGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACT-GTTTCCTGGG-TT-------C-TA--G-------------A--A--TGT--------T----------AAC-CAGTAC----TCGAGAACACCC------CATCTCCGTAAATAACTGA-TA--ACTTTCC-CAC----------TGGAAT-C---AGCGG--TGAGAGACAAATGATAA-TG-AGA-CGCAATGT--------CGAATATCAAACATCAC---GATGATTGTGGCC-GAAGCGT---GGATTTGAACT--------CTGGATTGACAGTCAGAC-G-----CGC--TAA------CGACTGAGCTAA---TCGGGCCCGGC----TCaatactgt
gi|13 : ctacaattgatcgattgattgattatTTAG-CGTTAT-TTTATGC--CTT--TGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTTC-------CT-------G-TG--T-------------G--G--T----------T----------AAC-CAGTAC----TCAAGCATACCC------CTTATCCCCAAGTAACTGA-CA--ACTCTCC-CAC----------TTGAAT-C---AGTGG--CGAGAGACGAATGATAA-TG-AGA-CTCAATGT--------CGTATATCAATCATCGC---GGAGACTGTAGCC-GGGCGGGCGAGGATTTAAACTCACGACCACTGGATTGATAGACAGGC-------C------AC-----T-ACTGAGATAA---GCGGGTC-------------GGT---A--C-GAT----AAAAGA---CAT-TG-----TACAACGT-GTA--T--------Atatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|5 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAG-CGTCAT-TTTATGG--CAT--CAAGGGCTAAC---------------------------CTA--ACCACT-ATTT-------C--------C-TG--G-------------G--A--TCCTGAAAGGTT----------AAC-CAGTAC----TCGAGCACACAC------CATCTCTGCAAGTAACTGA-TA--ACCTTCC-CAC----------TTGAAT-A---CGTGG--TGAAAGACAAATGATAA-TC-AGA-CACAATGT--------TGTGTATAAATCACCAT---GGAGACTGTTGCC-GGGC-GG---AGATTCAAACTCACGACCCTTGGATTGATCGTCAGAT-G-----CA---TAAC-----CAACTGAGATAA---TCGCACCCAGC----TTAagtgtgtttaaaat
gi|7 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTTAA-C----TATCTATATAACATGTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACT-CTTT-------CCTGTAAACC-TG--GAA-----------G--A--T----------T----------AAC-CAATAT----TTGAACACA-------------------AGTA-CTAA-TA--ACTTTCC-AAA----------TCACAT-C---AGCGG--TGAGAAACGATTGACAA-TA-AGA-GGTAATGTTGTATTAATGTATATCAATCATCAC---AGAGACTGT------GGCAGG---G----------CATGACCACTGAATTGATAGCCAGAC-A-----TGCTTTCATGCTTGTGACTGA-CTAA--------CCAGGC----TCAGT-----AA--A---------AATGA---TGA-TG-AG--CATGACagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|17 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaaTTAG-CGTCATTTTTATGC--CAT--CGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCAC--AGTT-------TC-------C-TG--G-------------G--A--T----------agatataaataaaatacaaa
gi|24 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatTTGG-CGTAATATT-ATGT--CGT--CGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA-------------------------TG--A-------------A--A--TGT--------T----------AAT-CAGTAC----TCGGGCACACCC-------ATCTC---------CCGA-T-------------------------TGAAT-C---AGCAG--TGAGAGACAAATGATAAATG-CTA-CACAATGT--------CGTATATTA----TCAC---GGAGACAGCGGCT-GGGTGGT---G-ATCCGAACTCACGACGTCTGGATTAAAATTCGAAT-ATTGTCCG---TGAC-----CTAATGATCCAA---cctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|49 : atTTAG-CATCATATTTATGC--CAC--CAAAAACTAAT----Ag
gi|10 : cctgaatatTAT-CGTCATTTTTATAC--CAT--CAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGT-CCTT-------CA-------C-TG--GCGGGATCACAGAAG--G--T----------T----------AAC-CAGTAC----TCGAGCTCACTC-------ATACCCACAAGTAACTGG-TG--ACTTTCC-AAC----------TTAAAT-A---AACGG--TTAGAGACGAATGACAG-AG-AAA-CGCAAT------------TATACCTATCATCACCACGGACTCTAGGGCC-CGGCGGG---G-ATTCGGACTCGCGATACTTCGATTTATATTCAGAC-G-----CG---CTAC-----CAAGTGAGCAAA---CCGGGTCCGGC-----CAGTAG----G--A-AAT----Ga
gi|43 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcTGA-CATAATATTTGCGC--CAT--CCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTtagaggtatgctcataaaataa
gi|31 : TAG-CCTCATATT-ATGC--CAC--CGATGGCT
gi|20 : ttttttattttatcgaacaaaaacacgagttatatattaaataacgttaacgctttggtgttgattgaatata-CGTCAT-TTTATGC--CAG--CAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACT-CTTT-------C--------C-TG--G-------------G--A--T----------CCTGGAAGGTAAAT-CAGTAC----TCTAGCAC-TCT------CATCTCCACAAGTTACTGA-TA--ACTTTGC-CAC----------TTGAAT-T---AGAGG--TAAGAGACAAATGATAA-TA-AGA-CACAATGT--------CATATATCAGTCATAAC---GGAGATTGTAGCT-GACC--G---GGATTCAAAC
gi|53 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc-CGTCAT-TTTATGC--CAT--CGAGGGTTA
gi|28 : attttgGTAATTTTTATGG--CAT--TGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTTC-------TTGTGATC-C-TGAAA-------------G--G--T----------T----------AAC-CAGTAC----
gi|30 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatattttgtATATTTATGT--CAT--TGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACT-TTTTACTGTGATC-------C-TT--G-------------A--AATT----------T----------AACAAAACACAGTGTTTAACACA-TA------CATCTTCCCAAGTAACCGA-TA--
gi|52 : aactgaatgatttgcttgaTTCATGC--CAT--CGAGGGCTAAA----AG--ATGAT----CTGT
gi|18 : tC--CAC--CGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACT-GTTTCCTGGGATC-------C-TG--GAA-----------G--G--T----------T----------AAC-TAGTAT----TCAAGCACACCC-------ATCTCCGCAAGTTACTGA-TA--ACTTTTC-CAC----------TTAAAT-C---AGCAG--TGAGAGAGGAATGCTAA-TG-AGC-CGCAATGT--------GGTATATCAATCATCAC---AG--ACTGTGACC-GGAT--G---GGATTCAGACTCATGACACCAAGTTTGATAGATGGAC-A-----C----T-AC-----CTACTGAGCTTA---CTGGGC
gi|3 : tatgataaGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCC-GTTT-------T--------C-TG--G-------------G--A--TCCTGAAAGGTT----------AAC-CAGTAC----CTGAGCACACCT------CATCTCACTAAGTAATTGA-TA--ACTTCCC-CAC----------TTGAAT-C---AGCGG--TGAGAGACAAATCATAA-TG-AGA-CACAATAT--------AGTATATCAATCATCAC---ATAGACTGTTGCT-GGGC-AG---CGATTTGAACCCACAA-CCCTAGATTGATAGTCAGAC-A-----CA---TAAC-----CAACTTAGCTTA---TCAGGCCTGGCATTTTTATTGGTGGAGGAA-GACCTCAGAACGAATCCAA-GT-AGA--ACCAGGTAACA--G--------ATAAACTTTCTAAAAAGATTTTTG---AGGGAGCG---GGATTTGAACCGACG--ATCTtgtagatattatacaattgttattattatgtgtcac
gi|25 : cgcaatttataaatatT-------TC-------T-TG--GC------------G--G--T----------T----------TAC-CAGCAC----TAGA-CACATACATGTATCATGGCTGCAAGTCACCAA-CT--ACTTTCC-CAC------------AAATTC---AGAGG--TGGGAAATTCATGG--A-TGTAGAACACAGT-T--------CATG-GCCATTCATCA-----GAGACCACGGTC-AGACGGG---G-ATTCAAACTCACGACCCCTGGACTGTCAGTTCGA---------G-------------GACTGAGCTTG---CCGGtagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|15 : ag-------C-TG--G-------------GCGA--T----------A----------AAC-CAGTAC----TAGA-CACACCC-------AGCTCTGCAAGTCATTGACTACTACTTCCC-CAC----------AT-ATT-CTGAAGTG-----GGAGACTCATGAT---TT-AGA--AC-ATG--------------ATCAATTATCAC---agtcgattaaaaaaagagttgaagatttgaa
gi|48 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccaAGCACACCA-------ATCTCTGCAAGTAACTGA-TA--ACATTCT-CAacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|38 : agtagtgaTCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAAC-C---AACGAACTCAGCAGTGAGAGATAA-
gi|19 : caGA-TT--ACTTTCC-CAC----------TT-----C---AGCGG--CCAGAGACGAATGTCAA-GG-AGA-CGCAATGT--------CGTGTATatatct
gi|17 : AGAGACTAATGATAA-TG-AGA-TACAATGT--------CGGATATCAGTCATCAC---AGAGACTGTTGCC-AGGC-TG---GGATTCGAACTGACGACCCCTGGATTGATAGTTGGAC-G-----TG---TTAC-----AGTCCCAGCTnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|22 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagggtAGAGACGAATGGTAA-TG-AGA-CCCGATGT--------CGTATATCGAACATCAC---GGAGACTGTGATC-GG-CCAG---GGATTCGTACTCA-G----------TGATAGTCAGAC-G-----CG---TTAC-----TGACTGAGCTAA---CTGGGTCCGGC----tcctgagaccaattaggcagtttaaccagtacca
gi|23 : taccatccgtctagcggcgAGACGGATGGTAA-TG-AGA-CGCAATAT--------CGTATATCATTCGTCAC---GGAGACTGTGGCA-GG--GAA---GGAATCGAACTCAAAACCCCAAATTTGATTATCAGAC-G-----CT---TTAC-----GGACTGATCTAA---TGGGGCCCGGC----Tattgaatgaaatgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|37 : TGTGGCA-AGGTGGG---CGATTAAAAATCA-AACCTATAGATTGGTAGTCAGATGA-----CC---T--C-----CAACTGATCAAA---CAAGGTCCacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|41 : agaa---GGATTCGAACCCACAACCCCT
gi|50 : TGGATTGATAGTCAGAT-G-----CC---TAAC-----CGACTAAGCTAA---TCGGGCaagtcatgagtccgaggacttaactgctcgattaaa
gi|15 : TGGATTGACAGTCAGTG-G-----CA---TAAC-----CAACTGAG-TGA---GCGG
gi|27 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaATTGACAGTCAGAC-A-----AG---CTAC-----TGACTGAGCTAA---CTGGGCCCAGC----Taacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|1 : -----CG---CAAG-----TAACTGA--TAACTTTCTGACTCGAA----TCAGCGGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CATAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC--GGTTG-G---GGACTCGATCTCACG--ACC-CTGGATTGATAGTCAGACG-CT-TAACCG--------ACTGAGCTAATCGGGCCCTGC-T----actgtaattgaagtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|46 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatattcagcgtcatttttatgccatcgagggctaacagacgacctaaccactgtttcctgggataaaccagtactcgagcacacccaatctcG---TAAT-----TGACTGAGCTAA---TCGGACCGGGC----TT-GTACT-GAC--A-AAT----tgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|54 : cgtAC-----CGACTGAGCTAA---TCGGGCCCTGC----Tat
gi|22 : CCGTC----T-AGCGGC-GAG--A-GAC----GAATGG---TAA-TG-AGA-CCCGATGTCGTA--T--------ATCGAACATC-ACGGAGACTGTGATC--GGCCA-G---GGATTCGTACTCA-G------------TGATAGTCAGACG-CG-TTACTG--------ACTGAGCTAACTGGGTCCGGCAT----T-GAA----TGAAA
gi|8 : taccat----TCAGTGGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CACAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC-GGGCGG-G---GGATTCGAACTCACG--ACCCCTGGATTGAAAGTCAGACG-CG-TAACCG--------ACTGAGCTAATCGGGCCCGGC-T----tgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatttagcgtcatttttatgccatcgagggctaacagatgatcagttaacctaaccactgtttcctgggattaaccagtactggagcacaccccatctccgcaagtaactgataactttcccacttgaa----TCAGTGGT-GAG--A-GAC----GAATGA---TAA-TT-AGA-CACAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC-GGGCGG-G---GGATTCGAACTCACG--ACCCCTGGATTGATAGTCAGACG-CG-TAACCG--------ACTGAGCTAATCGGGCCCGGC-T----A-CAAGTACCAAAACCtattgtaaaatgacgaaat
gi|12 : tgattgattgattgaatatttagcatcatttttatgccaccgagggctaacagacgatcagttaacctaaccactgtttcctgggattaaccagtactcgagcacaccccgtctccgtaagtaactgataactttcccacttgaa----TCAGCGGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CAAAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC-GGGC-G-G---GGATTCGAACTTACG--ACCCCTGGATTGATAGTCAGACG-CG-TAACCG--------ACTGAGCTAATCGGGTCCGGC-T----agctcgtatatataattcaagttatttttaaaaagctttgaaacaaacaagtaacactgcacgttttatcaaatattttaat
gi|6 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatttaacgtcatttttatgccatcgagggctaacagacgatcagttaaccttaccactgtttcctgagattaaccagtactcgagcacaccccatctccgcatgtaactgataactttcccacttgaa----TCAGTGGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CACAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC-AGGC-G-G---AGATTCAAACTCACG--ACCCCTGGATTGATAGTCAGAAG-CG-TAACCG--------ACTGAGCTAATCGGGCCGGGC-T----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|11 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatttagcatcatctttatgccatcaagggctaactgacaatcagttaacctaaccactgtttcgtgggattaaccagtactcgagcacaacccatctctgcaagtaactgataactttcccacttgaa----TCAGCAGT-GAG--A-GAC----GAATGA---TAA-TG-AGA-CACAATGTCGTA--T--------ATCAATCATC-ACGGAGACTGTTGCC-AGGTGG-G---G-ATTCGAACTCACG--ACCCCTGGATTGATAGTCAGACG-CG-TAACCA--------ACTGAGCTAATCGGGCCCAGC-T----ATGAAAacggtaacaaagacaactccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|4 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaagtgtcatttttatgccatcgagggctaacagatgatcagtgtttcctgggattaaccagtactcgagcacaccccatctccgcaagtaactgataactttcccacttgaa----TCAGCGGT-GAG--A-GAC----GAATGA---CAA-CG-AGA-CGCAATGTGGTA--T--------ATCAACCGTC-ACGGAGATTGTGGTC-GGGC-G-G---GGATTTTAATTCACG--ACCCCTGAGTTGATAGTCAGACG-CGCTAACGA--------A-TGGGCTAATCGGGCCCGGC-aattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|16 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatacttaacgtaatttttatgccatcgaggacttatagacgatcagttaacctaaccactgttccctgggatcctggaaggttaaccagtactcgagcacatcccatctccgcaagtaactgataactttcccatttgaa----TCAGCGGT-GAG--A-GAT----GAATGA---TAA-TG-AGA-CACAATGTCGCA--T--------ATCAATCATC-ATTGAGACTGTTGTC-AGG-AG-G---GGATTTAAACTCACG--ACCCCTGGATTGATAGTCAGACG-TG-TTACCG--------ACTAAGCTAATTGGGCCTGGC-T----a
gi|14 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatttagtgtcatttttatgccatcgagggctaacagactattagtttacctaaccactgtttcctgggatcctgaaaggttaaccagtactcaatcacatcctatctccgcaagtaactgataacttgaa----TCAGCGGT-GAG--A-GAC----AAATGA---TAA-TG-AGA-CGCAATGTCGAA--T--------ATCAAACATC-ACGATGATTGTGGCCGAAGC-G-T---GGATTTGAA----------CTCTGGATTGACAGTCAGACG-CGCTAA-CG--------ACTGAGCTAATCGGGCCCGGC-T----aatactgt
gi|13 : ctacaattgatcgattgattgattatttagcgtcattttatgccatcgagggctaacgctgagacgaccagttaaccaaaccactgtttcctgggttctagaatgttaaccagtactcgagaacaccccatctccgtaaataactgataactttcccactggaa----TCAGTGGC-GAG--A-GAC----GAATGA---TAA-TG-AGA-CTCAATGTCGTA--T--------ATCAATCATC-GCGGAGACTGTAGCC-GGGCGG-GCGAGGATTTAAACTCACG--ACCACTGGATTGATAGACAGGC--C----ACT---------ACTGAGATAAGCGGGTCctatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|3 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatttagcgttattttatgcctttgagggcttacagacactcagttaacccaactactgtttcctgtgtggttaaccagtactcaagcataccccttatccccaagtaactgacaactctcccacttgaa----TCAGCGGT-GAG--A-GAC----AAATCA---TAA-TG-AGA-CACAATATAGTA--T--------ATCAATCATC-ACATAGACTGTTGCT-GGGC-A-G---CGATTTGAACCCACA--ACC-CTAGATTGATAGTCAGACA-CA-TAACCA--------ACTTAGCTTATCAGGCCTGGC-ggtacgataaaagacattgtacaacgtgtataagtgtgtttaaaat
gi|18 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaa----TCAGCAGT-GAG--A-GAG----GAATGC---TAA-TG-AGC-CGCAATGTGGTA--T--------ATCAATCATC-AC--AGACTGTGACC-GGAT---G---GGATTCAGACTCATG--ACACCAAGTTTGATAGATGGACA-C--T-ACCT--------ACTGAGCTTACTGGGCatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatcttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|20 : tatgataaccaccgagggctaacaaatgaacagttaacctaatcactgtttcctgggatcctggaaggttaactagtattcaagcacacccatctccgcaagttactgataacttttccacttaaa----TTAGAGGT-AAG--A-GAC----AAATGA---TAA-TA-AGA-CACAATGTCATA--T--------ATCAGTCATA-ACGGAGATTGTAGCT-GACC---G---GGATTCAAACtgtagatattatacaattgttattattatgtgtcac
gi|7 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgccgtcattttatgccagcaagggctaacatacaatcagttaacctaaccactctttcctgggatcctggaaggtaaatcagtactctagcactctcatctccacaagttactgataactttgccacttgaa----TCAGCGGT-GAG--A-AAC----GATTGA---CAA-TA-AGA-GGTAATGTTGTA--TTAATGTATATCAATCATC-ACAGAGACTGT------GGCAG-G---G----------CATG--ACCACTGAATTGATAGCCAGACA-TG-CTTTCATGCTTGTGACTGA-CTAACCAGGCTCAG--T----A-AAAAT
gi|24 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgttgaaggctaacagatgatcagttaacataaccactctttcctgtaaacctggaagattaaccaatatttgaacacaagtactaataactttccaaatcaca----TCAGCAGT-GAG--A-GAC----AAATGA---TAAATG-CTA-CACAATGTCGTA--T--------ATTA----TC-ACGGAGACAGCGGCT-GGGTGG-T---G-ATCCGAACTCACG--ACGTCTGGATTAAgatgatgagcatgacagatataaataaaatacaaa
gi|25 : atttggcgtaatattatgtcgtcgagggcaaaccactctgtcctgggaccatgaaatgttaatcagtactcgggcacacccatctcccgattgaa----TCAGAGGT-GGG--A-AAT----TCATGG-----A-TGTAGAACACAGT-TCATG-----------GCCATTCATC-A--GAGACCACGGTC-AGACGG-G---G-ATTCAAACTCACG--ACCCCTGGACTGTCAGTTCGAGG------------------ACTGAGCTTGCCGGAGTCGAT-T----A-AAAAaattcgaatattgtccgtgacctaatgatccaag
gi|5 : agttcttggcggtttaccagcactagacacatacatgtatcatggctgcaagtcaccaactactttcccacaaatGTGGT-GAA--A-GAC----AAATGA---TAA-TC-AGA-CACAATGTTGTG--T--------ATAAATCACC-ATGGAGACTGTTGCC-GGGC-G-G---AGATTCAAACTCACG--ACCCTTGGATTGATCGTCAGATG-CA-TAACCA--------ACTGAGATAATCGCACCCAGC-T------TAAGTATTGGAAaagagttgaagatttgaa
gi|10 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatttagcgtcattttatggcatcaagggctaacctaaccactatttcctgggatcctgaaaggttaaccagtactcgagcacacaccatctctgcaagtaactgataaccttcccacttgaatacGGT-TAG--A-GAC----GAATGA---CAG-AG-AAA-CGCAA--TTATACCT--------ATCA-TCACC-ACGGACTCTAGGGCC-CGGCGG-G---G-ATTCGGACTCGCGATACTTC--GATTTATATTCAGACG-CG-CTACCA--------AGTGAGCAAACCGGGTCCGGC-CAGTAG-GAAATtaagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|17 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatctatcgtcatttttataccatcaaggaataacagacgacccgtaagcccaaccagtccttcactggcgggatcacagaaggttaaccagtactcgagctcactcatacccacaagtaactggtgactttccaacttaaataaacGGT--AG--A-GAC----TAATGA---TAA-TG-AGA-TACAATGTCGGA--T--------ATCAGTCATC-ACAGAGACTGTTGCC-AGGC-T-G---GGATTCGAACTGACG--ACCCCTGGATTGATAGTTGGACG-TG-TTACgtagaggtatgctcataaaataa
gi|23 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaag--A-GAC----GGATGG---TAA-TG-AGA-CGCAATATCGTA--T--------ATCATTCGTC-ACGGAGACTG-TGGC-AGG-GA-A---GGAATCGAACTCAAA--ACCCCAAATTTGATTATCAGACG-CT-TTACGG--------ACTGATCTAATGGGGCCCGGC-T----agtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|36 : C-ATGGAGACTGT-GAC-TGGTAG-G---G-ATTTTATATAACG--ACC--------AATGGCCTGATG-CC-CTACCA--------ACTAAGCTATCCGGTCCCTGC-T----acatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|37 : AGAATGTGGCA-AGGTGG-G---CGATTAAAAATCA-A--ACCTATAGATTGGTAGTCAGATGACC-T--CCA--------ACTGATCAAACAAGGTCC
gi|41 : ---GGATTCGAACCCACA--ACCCCT
gi|50 : TGGATTGATAGTCAGATG-CC-TAACCG--------ACTAAGCTAATCGGGCaagtcatgagtccgaggacttaactgctcgattaaa
gi|15 : TGGATTGACAGTCAGTGG-CA-TAACCA--------ACTGAG-TGAGCGG
gi|27 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaATTGACAGTCAGACA-AG-CTACTG--------ACTGAGCTAACTGGGCCCAGC-T----aacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|46 : CG-TG-TAATTG--------ACTGAGCTAATCGGACCGGGC-T----actgtaattgaagtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|54 : ACCG--------ACTGAGCTAATCGGGCCCTGC-T----tgtactgacaaatat
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): GATGTAACCACTTGCCATTTTTTGGTGGAAGCAGATTGCAGAATGAATCCGAAGAGAACCGCTGCTCTTTCGTAAGATACTGGCAAACTATCTAAAATAGATTTTATGGACTGCGCAGTTCTCAGCGGTGATGAATTAATCTTGAGACGGTACCATATGTCTGCCATAGCGGACACTATCAATGACTAGAATTTGTATGATTTATAATTATGTTGTTAATAACCCGAAATATAAATACACTGCAAAATGATGACTTCTGTAGTGATTATTTCAC
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|39 ): TTACTGGAACCCTCAGGGCGGTAAACCAGTTCAGGGCACAACCTTTTCTCAGCAAGTCATTGACTACTTC
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555 2 111 1111 111 1 111 11 1 222
lowQualScore : 5 3333 22 3333 22 22 1111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 9999999 1 22 1 8888888888 777777777 1 1 333 1 1 0 66666666 333 1 1 0 333 1 8888888888 3 44444 4444 000 3333 777 4 9999 111 6 0 0 0 1 0 0 1 333 55 2 2 33 3 6 1 4 0 999
lowQualScore : . .... .. .... .. .. ...................................................................... . . . ....... . .. . .......... ......... . . ... . . . ........ ... . . . ... . .......... . ..... .... ... .... ... . .... ... . . . . . . . . ... .. . . .. . . . . . ...
lowQualScore : 7 7777 44 7777 55 66 6666666666666666666666666666666666666666666666666666666666666666666666 7 7 7 4444444 6 22 7 0000000000 000000000 7 7 000 7 7 8 33333333 000 0 8 3 000 7 5555555555 0 00000 0000 444 2222 000 4 4444 777 5 8 8 8 2 0 2 0 222 22 5 5 55 7 6 4 5 0 000
consensus : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGAT-AA---TG-AGA-CGCAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTNGCCG-GGC-GG---GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCGNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTAACCGG-GCCCGGCTAGAAATTTTGAAACC
Reference ( family-1040 ) : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGAT-AA---TG-AGA-CGCAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTNGCCG-GGCGGG---GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACAATGTCGTATATCAATCATC-ACGGAGACTGTNGCCGGGCGGGGGATTCGAACTCACGACCCCTGGATTGATAGTCAGACGCGTAACCGACTGAGCTAATCGG-GCCCGGCTAGAAATACCGAAACC
gi|1 : TCAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------A----------AAC-CAGTACTC-GAGCAC-ACCC------AATCTCCGCAAGTAACTGA-TA--AC-TTTCTGAC----------TCGAA---------T-CAGCGGTGAGAGACGAATGAT-AA---TG-AGA-CATAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCC--GGTTGG---GGACTCGATCTCACGA-CCCTGGATTGAT-AGTCAGACG-----CT---TAAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|10 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTATCGTCATTTTTATACCATCAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGTCCTT--------C-------A-------C-TG--GCGGGATCACAGAAG--GT----------T----------AAC-CAGTACTC-GAGCTC-ACTC-------ATACCCACAAGTAACTGG-TG--AC-TTTCCAAC----------TTAAA---------T-AAACGGTTAGAGACGAATGAC-AG---AG-AAA-CGCAAT----TAT--------ACCTATCATCACCACGGACTCTAGGGCCC-GGC-GG---GGATTCGGACTCGCGATACTTCGATTTAT-ATTCAGACG-----CG---CTAC-----CAAGTGAGCAAACCGGGTCCGGC-----CAGtgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|11 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGT-----------------GTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCAGTGAGAGACGAATGAT-AA---TG-AGA-CACAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCCA-GGT-GG---GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CAACTGAGCTAATCGGGCCCAGC----Ttaggaaatgtagaggtatgctcataaaataa
gi|12 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaTTAACGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACTGTTT--------C-------C---------TG--A-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCATGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGAT-AA---TG-AGA-CAAAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCCG-GGC-GG---GGATTCGAACTTACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGTCCGGC----Tatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|13 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAGCGTTATTTT-ATGCCTTTGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTT--------C-------C-------TGTG--T-------------G--GT----------T----------AAC-CAGTACTC-AAGCAT-ACCC------CTTATCCCCAAGTAACTGA-CA--AC-TCTCCCAC----------TTGAA---------T-CAGTGGCGAGAGACGAATGAT-AA---TG-AGA-CTCAATGTCGTAT--------ATCAATCAT---CGCGGAGACTGTAGCCG-GGCGGGCGAGGATTTAAACTCACGACCACTGGATTGAT-AGACAGGC------C------AC-----T-ACTGAGATAAGCGGG-TCGGT-------ACGAT-A--AA--A-GAC----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|14 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAGCGTCATTTT-ATGCCATCGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACTGTTT--------C-------CTGGGTT-C-TA--G-------------A--ATGT--------T----------AAC-CAGTACTC-GAGAAC-ACCC------CATCTCCGTAAATAACTGA-TA--AC-TTTCCCAC----------TGGAA---------T-CAGCGGTGAGAGACAAATGAT-AA---TG-AGA-CGCAATGTCGAAT--------ATCAAACAT---CACGATGATTGTGGCCGAAGC-GT---GGATTTGAACT--------CTGGATTGAC-AGTCAGACG-----CGC--TAA------CGACTGAGCTAATCGGGCCCGGC----TCattgtacaacgtgtataagtgtgtttaaaat
gi|15 : ctacaattgatcgattgattgattatT--------C-------CA------C-TG--G-------------GCGAT----------A----------AAC-CAGTACTA-GA-CAC-A-CC------CAGCTCTGCAAGTCATTGACTACTAC-TTCCCCAC----------AT-AT---------T-CTGAAGTGGGAGACTCATGAT------TT-AGA--AC-ATG--------------ATCAATTAT---CACtatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaaTGGATTGACAGTCAGTGGCATAACCAACTGAG-TGAGCGGAACATGGCTAacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|16 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTTAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-AATCAC-ATCC------TATCTCCGCAAGTAACTGA-TA--AC-TT------------------GAA---------T-CAGCGGTGAGAGATGAATGAT-AA---TG-AGA-CACAATGTCGCAT--------ATCAATCAT---CATTGAGACTGTTGTCA-GG-AGG---GGATTTAAACTCACGACCCCTGGATTGAT-AGTCAGACG-----TG---TTAC-----CGACTAAGCTAATTGGGCCTGGC----Ttataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|17 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAGCGTCATTTTTATGCCATCGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCACAGTTT----------------C-------C-TG--G-------------G--AT----------aatactgt
gi|17 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatGGT----AG--A-GAC----TAATGA---TAATGAGATACAATGTCGGATATCAGTCATC-ACAGAGACTGTTGCCAGGC-TGGGATTCGAACTGACGACCCCTGGATTGATAGTTGGACGTGTTACAGTCCCAGCTcctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|18 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagCCACCGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACTGTTT--------C-------CTGGGATCC-TG--GAA-----------G--GT----------T----------AAC-TAGTATTC-AAGCAC-ACCC-------ATCTCCGCAAGTTACTGA-TA--AC-TTTTCCAC----------TTAAA---------T-CAGCAGTGAGAGAGGAATGCT-AA---TG-AGC-CGCAATGTGGTAT--------ATCAATCAT---CAC--AGACTGTGACCG-GAT--G---GGATTCAGACTCATGACACCAAGTTTGAT-AGATGGACA-----C----T-AC-----CTACTGAGCTTACTGGGCtcctgagaccaattaggcagtttaaccagtacca
gi|19 : tatgataaGA-TT--AC-TTTCCCAC----------TT--------------CAGCGGCCAGAGACGAATGTC-AA---GG-AGA-CGCAATGTCGTGT--------ATtgtagatattatacaattgttattattatgtgtcac
gi|2 : TTAACGTCATATTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTTTTT--------T-------T-------C-TG--G-------------G--AT----------T----------AAC-CAATACTC-GAGCAC-ACCC------CATCTCTGCAAGTAACTGA-TA--AC-TTTTCCAC----------TTGAA---------T-CAGTGATCAGAGACGAATGAT-AA---TG-AGA-CACAATGTCGTAT--------ATCAATCAT---CACGGAAACTGTTGCCG-GACGGG---GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACA-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGTGGT-G--AG--A-GAT----GAATGA---TAATGAGACACAACGTCGTATATCAATCATC-ATGGAGACTGTTGCCAGGCGGGGGATTCGAACTCACGACCTCTGGATTGATAGTCAGACGCGTAACCAACTGAGCTAATCGG-GCCCGGCTGGAAATTTTGAAACCnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|20 : CGTCATTTT-ATGCCAGCAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACTCTTT--------C-------C---------TG--G-------------G--AT----------CCTGGAAGGTAAAT-CAGTACTC-TAGCAC--TCT------CATCTCCACAAGTTACTGA-TA--AC-TTTGCCAC----------TTGAA---------T-TAGAGGTAAGAGACAAATGAT-AA---TA-AGA-CACAATGTCATAT--------ATCAGTCAT---AACGGAGATTGTAGCTG-ACC--G---GGATTCAAACtgtcaacaaggcattgacctttgcctcagaataattcacttatcaagttattgagtgcttttacatgacataaaaactgtcttaaattattttgcacttagtagacattctattcta
gi|21 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc---------T-CAGCGGT----GATGAAT--T-AATCTTG-AGA-CG--GTACCATAT--------GTCTGCCAT---AGCGGACACTAT
gi|22 : gatgtaaccacttgccattttttggtggaagcagattgcagaatgaatccgaagagaaccgctgctctttcgtaagatactggcaaactatctaaaatagattttatggactgcgcagttcCCGTC----T-AGCGGC-G--AG--A-GAC----GAATGG---TAATGAGACCCGATGTCGTATATCGAACATC-ACGGAGACTGTGATC-GGCCAGGGATTCGTACTCA-G----------TGATAGTCAGACGCGTTACTGACTGAGCTAACTGG-GTCCGGCcaatgactagaatttgtatgatttataattatgttgttaataacccgaaatataaatacactgcaaaatgatgacttctgtagtgattatttcac
gi|23 : taccatAGACGGATGGT-AA---TG-AGA-CGCAATATCGTAT--------ATCATTCGT---CACGGAGACTGTGGCAG-G--GAA---GGAATCGAACTCAAAACCCCAAATTTGAT-TATCAGACG-----CT---TTAC-----GGACTGATCTAATGGGGCCCGGC----Tattgaatgaaatgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|24 : TTGGCGTAATATT-ATGTCGTCGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA--------------------------------TG--A-------------A--ATGT--------T----------AAT-CAGTACTC-GGGCAC-ACCC-------ATCTCC---------CGA-T-------------------------TGAA---------T-CAGCAGTGAGAGACAAATGATAAA---TG-CTA-CACAATGTCGTAT------------ATTAT---CACGGAGACAGCGGCTG-GGT-GG---TGATCCGAACTCACGACGTCTGGATTAAA-ATTCGAATATTGTCCG---TGAC-----CTAATGATCCAAacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|25 : atT--------T-------C-------T-TG--GC------------G--GT----------T----------TAC-CAGCACTA-GA-CAC-ATACATGTATCATGGCTGCAAGTCACCAA-CT--AC-TTTCCCAC------------AAA---------TTCAGAGGTGGGAAATTCATGG---A---TGTAGAACACAGT-TCATG---------GCCATTCAT---CA--GAGACCACGGTCA-GACGGG---G-ATTCAAACTCACGACCCCTGGACTGTC-AGTT---CG-----AG-------------GACTGAGCTTGCCGGg
gi|27 : agATTGACAGTCAGACAAGCTACTGACTGAGCTAACTGG-GCCCAGCTAagtcgattaaaaaaagagttgaagatttgaa
gi|28 : TTTGTGTAATTTTTATGGCATTGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTT--------CTTGTGATC-------C-TGAAA-------------G--GT----------T----------AAC-CAGTACctgtaattgaagtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|3 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatatGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCCGTTT--------T-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACCT-GAGCAC-ACCT------CATCTCACTAAGTAATTGA-TA--AC-TTCCCCAC----------TTGAA---------T-CAGCGGTGAGAGACAAATCAT-AA---TG-AGA-CACAATATAGTAT--------ATCAATCAT---CACATAGACTGTTGCTG-GGC-AG---CGATTTGAACCCACAA-CCCTAGATTGAT-AGTCAGACA-----CA---TAAC-----CAACTTAGCTTATCAGGCCTGGCATTTTTATTGGTGG--AGGAA-GACCTCAGAACGAATCCAAGTAGA-ACCAGGTAACAGATAAACTTTCTAAAAAGATTTTTG-AGGGAGCGGGATTTGAACCGACGATC
gi|3 : cgcaatttataaatatC----TTAGCGGT-G--AG--A-GGC----AAGTGA---TCTTGAGAttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|30 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaatcagcggtgagagacaaatcataatgagacacaatatagtatatcaatcatcacatagactgttgctgggcagcgatttgaacccacaaccctagattgatagtcagacacataaccaacttagcttatcaggcctggcatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatATATTTATGTCATTGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACTTTTTACTGTGATC-------C-------T-TG--A-------------A--AT----------TTAACAA----AACACAGTGTTT-AA-CAC-ATAC-------ATCTTCCCAAGTAACCGA-TA--tggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|36 : aactgaatgatttgcttga---CATGGAGACTGTGACTG-G--TAG---GGATTTTATATAACGACC--------AAT-GGCCTGATG-----CC---CTAC-----CAACTAAGCTATCCGGTCCCTGC----T
gi|37 : AGAATGTGGCAA-GGTGGG---CGATTAAAAATCA-AACCTATAGATTGGT-AGTCAGATGA----CC---T--C-----CAACTGATCAAACAAGGTCC
gi|38 : TCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAACCAACGAACT-CAGCAGTGAGAGATAAAT
gi|39 : ca----------AAC-CAGT--TCAGGGCACAACCT------TTTCTCAGCAAGTCATTGA-CT--AC-TTatct
gi|4 : ttactggaaccctcagggcggtaTTAACGTAATTTTTATGCCATCGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTT---------C-------C-------C-TG--G-------------G--ATCCTGGAAGGTT----------AAC-CAGTACTC-GAGCAC-ATCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAT----------TTGAA---------T-CAGCGGTGAGAGACGAATGAC-AA---CG-AGA-CGCAATGTGGTAT--------ATCAACCGT---CACGGAGATTGTGGTCG-GGC-GG---GGATTTTAATTCACGACCCCTGAGTTGAT-AGTCAGACG-----CGC--TAA------CGAATGGGCTAATCGGGCCCGGC----c
gi|41 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatac---GGATTCGAACCCACAACCCCTAAGTC-ATGAGTCCGAGGA----CT---TAAC-----TGa
gi|43 : ATATTTGCGCCATCCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTctcgattaaa
gi|46 : tgacataCG-----TG---TAAT-----TGACTGAGCTAATCGGACCGGGC----T
gi|48 : AGTAGTG-AAGCAC-ACCA-------ATCTCTGCAAGTAACTGA-TA--AC-ATTCTCAtgtactgacaaatat
gi|5 : TTAGCGTCATTTT-ATGGCATCAAGGGCTAAC---------------------------CTA--ACCACTATTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-GAGCAC-ACAC------CATCTCTGCAAGTAACTGA-TA--AC-CTTCCCAC----------TTGAA---------T-ACGTGGTGAAAGACAAATGAT-AA---TC-AGA-CACAATGTTGTGT--------ATAAATCAC---CATGGAGACTGTTGCCG-GGC-GG---AGATTCAAACTCACGACCCTTGGATTGAT-CGTCAGATG-----CA---TAAC-----CAACTGAGATAATCGCACCCAGC----TTA
gi|50 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTGGATTGAT-AGTCAGATG-----CC---TAAC-----CGACTAAGCTAATCGGGCagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|52 : TTTCATGCCATCGAGGGCTAAA----AG--ATGAT----CTGT
gi|53 : TTTGCGTCATTTT-ATGCCATCGAGGGTTA
gi|54 : atAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|6 : TTAGCATCATCTTTATGCCATCAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------G---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-AACC------CATCTCTGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGAT-AA---TG-AGA-CACAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCCA-GGC-GG---AGATTCAAACTCACGACCCCTGGATTGAT-AGTCAGAAG-----CG---TAAC-----CGACTGAGCTAATCGGGCCGGGC----T--ACGGT-AACAA--A-GAC----AA
gi|7 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACTCTTT--------C-------CTGTAAACC-TG--GAA-----------G--AT----------T----------AAC-CAATATTT-GAACAC-A-------------------AGTA-CTAA-TA--AC-TTTCCAAA----------TCACA---------T-CAGCGGTGAGAAACGATTGAC-AA---TA-AGA-GGTAATGTTGTATTAATGTATATCAATCAT---CACAGAGACTGTGGCAG-GGC------------------ATGACCACTGAATTGAT-AGCCAGACA-----TGCTTTCATGCTTGTGACTGA-CTAA-----CCAGGC----TCA---GT-A--A------------AAATGA---TGATGAGctccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|8 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgTTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTG-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGAT-AA---TG-AGA-CACAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCCG-GGCGGG---GGATTCGAACTCACGACCCCTGGATTGAA-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TTA-TTGT-A--AA--ATGAC----GAAcatgacagatataaataaaatacaaa
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAGCATCATTTTTATGCCACCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CGTCTCCGTAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGAT-AA---TT-AGA-CACAATGTCGTAT--------ATCAATCAT---CACGGAGACTGTTGCCG-GGCGGG---GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----Tat
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|31 ): TTTTTTATTTTATCGAACAAAAACACGAGTTATATATTAAATAACGTTAACGCTTTGGTGTTGATTGAATATATAGCCTCATATTATGCCACCGATGGCT
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|49 ): CCTGAATATTTAGCATCATATTTATGCCACCAAAAACTAATAA
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555 11111111 1111 111 11 111 11
lowQualScore : 5 3333 22 3333 22 22 1111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 9999999 1 22 1 8888888888 777777777 1 444 1 1 0 66666666 333 1 1 3 3333 1 1 1 8888888888 2 44444 00000000 3333 777 4 9999 111 3 1 1 0 1 8 1 0 777 11 1 0 555 1 2 6 44 6
lowQualScore : . .... .. .... .. .. ...................................................................... . . . ....... . .. . .......... ......... . ... . . . ........ ... . . . .... . . . .......... . ..... ........ .... ... . .... ... . . . . . . . . ... .. . . ... . . . .. .
lowQualScore : 7 7777 44 7777 55 66 6666666666666666666666666666666666666666666666666666666666666666666666 7 7 7 4444444 6 22 7 0000000000 000000000 7 888 7 7 8 33333333 222 0 9 8 9999 8 8 7 2222222222 0 00000 88888888 2222 000 4 4444 777 2 4 4 8 2 0 4 6 888 00 0 8 888 8 2 7 33 7
consensus : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TAGAAA-TTTGAAACC
Reference ( family-1040 ) : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCGNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTAACCGGGCCCGGC-TAGAAATTTTGAAACC
gi|1 : TCAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------A----------AAC-CAGTACTC-GAGCAC-ACCC------AATCTCCGCAAGTAACTGA-TA--AC-TTTCTGAC----------TCGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CATAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GTT-GG----G-G-ACTCGATCTCACGA-CCCTGGATTGAT-AGTCAGACG-----CT---TAAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|10 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTATCGTCATTTTTATACCATCAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGTCCTT--------C-------A-------C-TG--GCGGGATCACAGAAG--GT----------T----------AAC-CAGTACTC-GAGCTC-ACTC-------ATACCCACAAGTAACTGG-TG--AC-TTTCCAAC----------TTAAA---------T-AAACGGTTAGAGACGAATGACAG---AG-AAA-CGCAAT----TAT--------ACCTATCATCACCACGGACTCTAGGGCCC-GGC-GG----G-G-ATTCGGACTCGCGATACTTCGATTTAT-ATTCAGACG-----CG---CTAC-----CAAGTGAGCAAACCGGGTCCGGC-----CAGtgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|11 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGT-----------------GTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCAGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGT-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CAACTGAGCTAATCGGGCCCAGC----Ttaggaaatgtagaggtatgctcataaaataa
gi|12 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaTTAACGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACTGTTT--------C-------C---------TG--A-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCATGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CAAAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGC-GG----G-G-ATTCGAACTTACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGTCCGGC----Tatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|13 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAGCGTTATTTT-ATGCCTTTGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTT--------C-------C-------TGTG--T-------------G--GT----------T----------AAC-CAGTACTC-AAGCAT-ACCC------CTTATCCCCAAGTAACTGA-CA--AC-TCTCCCAC----------TTGAA---------T-CAGTGGCGAGAGACGAATGATAA---TG-AGA-CTCAATGTCGTAT--------ATCAATCATCGC---GGAGACTGTAGCCG-GGC-GGGCGAG-G-ATTTAAACTCACGACCACTGGATTGAT-AGACAGGC------C------AC-----T-ACTGAGATAAGCGGG-TCGGT-------ACGAT-A--AA--A-GAC----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|14 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAGCGTCATTTT-ATGCCATCGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACTGTTT--------C-------CTGGGTT-C-TA--G-------------A--ATGT--------T----------AAC-CAGTACTC-GAGAAC-ACCC------CATCTCCGTAAATAACTGA-TA--AC-TTTCCCAC----------TGGAA---------T-CAGCGGTGAGAGACAAATGATAA---TG-AGA-CGCAATGTCGAAT--------ATCAAACATCAC---GATGATTGTGGCCGAAGC-GT----G-G-ATTTGAACT--------CTGGATTGAC-AGTCAGACG-----CGC--TAA------CGACTGAGCTAATCGGGCCCGGC----TCattgtacaacgtgtataagtgtgtttaaaat
gi|15 : ctacaattgatcgattgattgattatT--------C-------CA------C-TG--G-------------GCGAT----------A----------AAC-CAGTACTA-GA-CAC-A-CC------CAGCTCTGCAAGTCATTGACTACTAC-TTCCCCAC----------AT-AT---------T-CTGAAGTGGGAGACTCATGAT-----TT-AGA--AC-ATG--------------ATCAATTATCAC---tatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaaTGGATTGAC-AGTCAGTGG-----CA---TAAC-----CAACTGAG-TGAGCGGacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTGGATTGACAGTCAGTGGCATAACCAACTGAGTGAGCGGAACATGGC-TAaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|16 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTTAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-AATCAC-ATCC------TATCTCCGCAAGTAACTGA-TA--AC-TT------------------GAA---------T-CAGCGGTGAGAGATGAATGATAA---TG-AGA-CACAATGTCGCAT--------ATCAATCATCAT---TGAGACTGTTGTCA-GGA-GG----G-G-ATTTAAACTCACGACCCCTGGATTGAT-AGTCAGACG-----TG---TTAC-----CGACTAAGCTAATTGGGCCTGGC----Ttataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|17 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAGCGTCATTTTTATGCCATCGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCACAGTTT----------------C-------C-TG--G-------------G--AT----------aatactgt
gi|17 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatGGT----AG--A-GAC----TAATGA---TAATGAGATACAATGTCGGATATCAGTCATC-ACAGAGACTGTTGCCAGGC-TGGGATTCGAACTGACGACCCCTGGATTGATAGTTGGACGTGTTACAGTCCCAGCTTCCTGAGACCAAT-TAGGCAGTTT--AACCcctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|18 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagCCACCGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACTGTTT--------C-------CTGGGATCC-TG--GAA-----------G--GT----------T----------AAC-TAGTATTC-AAGCAC-ACCC-------ATCTCCGCAAGTTACTGA-TA--AC-TTTTCCAC----------TTAAA---------T-CAGCAGTGAGAGAGGAATGCTAA---TG-AGC-CGCAATGTGGTAT--------ATCAATCATCAC-----AGACTGTGACCG-GAT--G----G-G-ATTCAGACTCATGACACCAAGTTTGAT-AGATGGACA-----C----T-AC-----CTACTGAGCTTACTGGGCagtacca
gi|19 : tatgataaGA-TT--AC-TTTCCCAC----------TT--------------CAGCGGCCAGAGACGAATGTCAA---GG-AGA-CGCAATGTCGTGT--------ATtgtagatattatacaattgttattattatgtgtcac
gi|2 : TTAACGTCATATTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTTTTT--------T-------T-------C-TG--G-------------G--AT----------T----------AAC-CAATACTC-GAGCAC-ACCC------CATCTCTGCAAGTAACTGA-TA--AC-TTTTCCAC----------TTGAA---------T-CAGTGATCAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAAACTGTTGCCG-GAC-GG----G-GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACA-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGTGGT-G--AG--A-GAT----GAATGA---TAATGAGACACAACGTCGTATATCAATCATC-ATGGAGACTGTTGCCAGGCGGGGGATTCGAACTCACGACCTCTGGATTGATAGTCAGACGCGTAACCAACTGAGCTAATCGGGCCCGGC-TGGAAATTTTGAAACCnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|20 : CGTCATTTT-ATGCCAGCAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACTCTTT--------C-------C---------TG--G-------------G--AT----------CCTGGAAGGTAAAT-CAGTACTC-TAGCAC--TCT------CATCTCCACAAGTTACTGA-TA--AC-TTTGCCAC----------TTGAA---------T-TAGAGGTAAGAGACAAATGATAA---TA-AGA-CACAATGTCATAT--------ATCAGTCATAAC---GGAGATTGTAGCT--GAC-CG----G-G-ATTCAAACtgtcaacaaggcattgacctttgcctcagaataattcacttatcaagttattgagtgcttttacatgacataaaaactgtcttaaattattttgcacttagtagacattctattcta
gi|21 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc---------T-CAGCGGT----GATGAAT--TAATCTTG-AGA-CG--GTACCATAT--------GTCTGCCATAGC---GGACACTAT
gi|22 : gatgtaaccacttgccattttttggtggaagcagattgcagaatgaatccgaagagaaccgctgctctttcgtaagatactggcaaactatctaaaatagattttatggactgcgcagttcCCGTC----T-AGCGGC-G--AG--A-GAC----GAATGG---TAATGAGACCCGATGTCGTATATCGAACATC-ACGGAGACTGTGATC-GGCCAGGGATTCGTACTCA-G----------TGATAGTCAGACGCGTTACTGACTGAGCTAACTGGGTCCGGCATTGAA----TGAAAcaatgactagaatttgtatgatttataattatgttgttaataacccgaaatataaatacactgcaaaatgatgacttctgtagtgattatttcac
gi|23 : taccatAGACGGATGGTAA---TG-AGA-CGCAATATCGTAT--------ATCATTCGTCAC---GGAGACTGTGGCAG-GGA-AG----G-A-A-TCGAACTCAAAACCCCAAATTTGAT-TATCAGACG-----CT---TTAC-----GGACTGATCTAATGGGGCCCGGC----Ttgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|24 : TTGGCGTAATATT-ATGTCGTCGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA--------------------------------TG--A-------------A--ATGT--------T----------AAT-CAGTACTC-GGGCAC-ACCC-------ATCTCC---------CGA-T-------------------------TGAA---------T-CAGCAGTGAGAGACAAATGATAAA--TG-CTA-CACAATGTCGTAT--------ATTA----TCAC---GGAGACAGCGGCTG-GGT-GG----T-G-ATCCGAACTCACGACGTCTGGATTAAA-ATTCGAATATTGTCCG---TGAC-----CTAATGATCCAAacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|25 : atT--------T-------C-------T-TG--GC------------G--GT----------T----------TAC-CAGCACTA-GA-CAC-ATACATGTATCATGGCTGCAAGTCACCAA-CT--AC-TTTCCCAC------------AAA---------TTCAGAGGTGGGAAATTCATGG--A---TGTAGAACACAGT-TCATG---------GCCATTCATCA-----GAGACCACGGTCA-GAC-GG----G-G-ATTCAAACTCACGACCCCTGGACTGTC-AGTT---CG-----AG-------------GACTGAGCTTGCCGGg
gi|27 : agATTGACAGTCAGACAAGCTACTGACTGAGCTAACTGGGCCCAGC-TAagtcgattaaaaaaagagttgaagatttgaa
gi|28 : TTTGTGTAATTTTTATGGCATTGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTT--------CTTGTGATC-------C-TGAAA-------------G--GT----------T----------AAC-CAGTACctgtaattgaagtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|3 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatatGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCCGTTT--------T-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACCT-GAGCAC-ACCT------CATCTCACTAAGTAATTGA-TA--AC-TTCCCCAC----------TTGAA---------T-CAGCGGTGAGAGACAAATCATAA---TG-AGA-CACAATATAGTAT--------ATCAATCATCAC---ATAGACTGTTGCTG-GGC-AG----C-G-ATTTGAACCCACAA-CCCTAGATTGAT-AGTCAGACA-----CA---TAAC-----CAACTTAGCTTATCAGGCCTGGCATTTTTATTGGTGG--AGGAA-GACCTCAGAACGAATCCAAGTAGA-ACCAGGTAACAGATAAACTTTCTAAAAAGATTTTTG-AGGGAGCGGGATTTGAACCGACGATC
gi|3 : cgcaatttataaatatC----TTAGCGGT-G--AG--A-GGC----AAGTGA---TCTTGAGAttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|30 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaatcagcggtgagagacaaatcataatgagacacaatatagtatatcaatcatcacatagactgttgctgggcagcgatttgaacccacaaccctagattgatagtcagacacataaccaacttagcttatcaggcctggcatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatATATTTATGTCATTGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACTTTTTACTGTGATC-------C-------T-TG--A-------------A--AT----------TTAACAA----AACACAGTGTTT-AA-CAC-ATAC-------ATCTTCCCAAGTAACCGA-TA--tggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|36 : aactgaatgatttgcttgaC-ATGGAGACTGTGACTGG--TAGGGATTTTATATAACGACC--------AATGGCCTGATGCCCTACCAACTAAGCTATCCGGTCCCTGC-T
gi|37 : AGAATGTGGCAA-GGT-GG----GCG-ATTAAAAATCA-AACCTATAGATTGGT-AGTCAGATGA----CC---T--C-----CAACTGATCAAACAAGGTCC
gi|38 : TCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAACCAACGAACT-CAGCAGTGAGAGATAAAT
gi|39 : ca----------AAC-CAGT--TCAGGGCACAACCT------TTTCTCAGCAAGTCATTGA-CT--AC-TTatct
gi|4 : ttactggaaccctcagggcggtaTTAACGTAATTTTTATGCCATCGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTT---------C-------C-------C-TG--G-------------G--ATCCTGGAAGGTT----------AAC-CAGTACTC-GAGCAC-ATCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAT----------TTGAA---------T-CAGCGGTGAGAGACGAATGACAA---CG-AGA-CGCAATGTGGTAT--------ATCAACCGTCAC---GGAGATTGTGGTCG-GGC-GG----G-G-ATTTTAATTCACGACCCCTGAGTTGAT-AGTCAGACG-----CGC--TAA------CGAATGGGCTAATCGGGCCCGGC----c
gi|41 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatac----G-G-ATTCGAACCCACAACCCCTAAGTC-ATGAGTCCGAGGA----CT---TAAC-----TGa
gi|43 : ATATTTGCGCCATCCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTctcgattaaa
gi|46 : tgacataCG-----TG---TAAT-----TGACTGAGCTAATCGGACCGGGC----T
gi|48 : AGTAGTG-AAGCAC-ACCA-------ATCTCTGCAAGTAACTGA-TA--AC-ATTCTCAtgtactgacaaatat
gi|5 : TTAGCGTCATTTT-ATGGCATCAAGGGCTAAC---------------------------CTA--ACCACTATTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-GAGCAC-ACAC------CATCTCTGCAAGTAACTGA-TA--AC-CTTCCCAC----------TTGAA---------T-ACGTGGTGAAAGACAAATGATAA---TC-AGA-CACAATGTTGTGT--------ATAAATCACCAT---GGAGACTGTTGCCG-GGC-GG----A-G-ATTCAAACTCACGACCCTTGGATTGAT-CGTCAGATG-----CA---TAAC-----CAACTGAGATAATCGCACCCAGC----TTA
gi|50 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTGGATTGAT-AGTCAGATG-----CC---TAAC-----CGACTAAGCTAATCGGGCagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|52 : TTTCATGCCATCGAGGGCTAAA----AG--ATGAT----CTGT
gi|53 : TTTGCGTCATTTT-ATGCCATCGAGGGTTA
gi|54 : atAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|6 : TTAGCATCATCTTTATGCCATCAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------G---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-AACC------CATCTCTGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGC-GG----A-G-ATTCAAACTCACGACCCCTGGATTGAT-AGTCAGAAG-----CG---TAAC-----CGACTGAGCTAATCGGGCCGGGC----T--ACGGT-AACAA--A-GAC----AA
gi|7 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACTCTTT--------C-------CTGTAAACC-TG--GAA-----------G--AT----------T----------AAC-CAATATTT-GAACAC-A-------------------AGTA-CTAA-TA--AC-TTTCCAAA----------TCACA---------T-CAGCGGTGAGAAACGATTGACAA---TA-AGA-GGTAATGTTGTATTAATGTATATCAATCATCAC---AGAGACTGTGGCAG-GGC---------------------ATGACCACTGAATTGAT-AGCCAGACA-----TGCTTTCATGCTTGTGACTGA-CTAA-----CCAGGC----TCA---GT-A--A------------AAATGA---TGATGAG-CATGACctccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|8 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgTTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTG-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAA-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TTA-TTGT-A--AA--ATGAC----GAAagatataaataaaatacaaa
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAGCATCATTTTTATGCCACCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CGTCTCCGTAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TT-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----Tat
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|31 ): TTTTTTATTTTATCGAACAAAAACACGAGTTATATATTAAATAACGTTAACGCTTTGGTGTTGATTGAATATATAGCCTCATATTATGCCACCGATGGCT
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|49 ): CCTGAATATTTAGCATCATATTTATGCCACCAAAAACTAATAA
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555 11111111 1111 111 111 222222222
lowQualScore : 5 3333 22 3333 22 22 1111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 9999999 1 22 1 8888888888 777777777 1 444 1 1 0 66666666 333 1 1 3 3333 1 1 1 8888888888 2 44444 00000000 3333 777 4 9999 111 3 1 1 0 1 8 1 0 777 99 1 0 555 1 2 6 999999999 2
lowQualScore : . .... .. .... .. .. ...................................................................... . . . ....... . .. . .......... ......... . ... . . . ........ ... . . . .... . . . .......... . ..... ........ .... ... . .... ... . . . . . . . . ... .. . . ... . . . ......... .
lowQualScore : 7 7777 44 7777 55 66 6666666666666666666666666666666666666666666666666666666666666666666666 7 7 7 4444444 6 22 7 0000000000 000000000 7 888 7 7 8 33333333 222 0 9 8 9999 8 8 7 2222222222 0 00000 88888888 2222 000 4 4444 777 2 4 4 8 2 0 4 6 888 88 0 8 888 0 2 7 555555555 5
consensus : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
Reference ( family-1040 ) : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
gi|1 : TCAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------A----------AAC-CAGTACTC-GAGCAC-ACCC------AATCTCCGCAAGTAACTGA-TA--AC-TTTCTGAC----------TCGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CATAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GTT-GG----G-G-ACTCGATCTCACGA-CCCTGGATTGAT-AGTCAGACG-----CT---TAAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|10 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTATCGTCATTTTTATACCATCAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGTCCTT--------C-------A-------C-TG--GCGGGATCACAGAAG--GT----------T----------AAC-CAGTACTC-GAGCTC-ACTC-------ATACCCACAAGTAACTGG-TG--AC-TTTCCAAC----------TTAAA---------T-AAACGGTTAGAGACGAATGACAG---AG-AAA-CGCAAT----TAT--------ACCTATCATCACCACGGACTCTAGGGCCC-GGC-GG----G-G-ATTCGGACTCGCGATACTTCGATTTAT-ATTCAGACG-----CG---CTAC-----CAAGTGAGCAAACCGGGTCCGGC-----CAGtgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|11 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGT-----------------GTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCAGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGT-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CAACTGAGCTAATCGGGCCCAGC----Ttaggaaatgtagaggtatgctcataaaataa
gi|12 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaTTAACGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACTGTTT--------C-------C---------TG--A-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCATGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CAAAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGC-GG----G-G-ATTCGAACTTACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGTCCGGC----Tatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|13 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAGCGTTATTTT-ATGCCTTTGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTT--------C-------C-------TGTG--T-------------G--GT----------T----------AAC-CAGTACTC-AAGCAT-ACCC------CTTATCCCCAAGTAACTGA-CA--AC-TCTCCCAC----------TTGAA---------T-CAGTGGCGAGAGACGAATGATAA---TG-AGA-CTCAATGTCGTAT--------ATCAATCATCGC---GGAGACTGTAGCCG-GGC-GGGCGAG-G-ATTTAAACTCACGACCACTGGATTGAT-AGACAGGC------C------AC-----T-ACTGAGATAAGCGGG-TCGGT-------ACGAT-A--AA--A-GAC----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|14 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAGCGTCATTTT-ATGCCATCGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACTGTTT--------C-------CTGGGTT-C-TA--G-------------A--ATGT--------T----------AAC-CAGTACTC-GAGAAC-ACCC------CATCTCCGTAAATAACTGA-TA--AC-TTTCCCAC----------TGGAA---------T-CAGCGGTGAGAGACAAATGATAA---TG-AGA-CGCAATGTCGAAT--------ATCAAACATCAC---GATGATTGTGGCCGAAGC-GT----G-G-ATTTGAACT--------CTGGATTGAC-AGTCAGACG-----CGC--TAA------CGACTGAGCTAATCGGGCCCGGC----TCattgtacaacgtgtataagtgtgtttaaaat
gi|15 : ctacaattgatcgattgattgattatT--------C-------CA------C-TG--G-------------GCGAT----------A----------AAC-CAGTACTA-GA-CAC-A-CC------CAGCTCTGCAAGTCATTGACTACTAC-TTCCCCAC----------AT-AT---------T-CTGAAGTGGGAGACTCATGAT-----TT-AGA--AC-ATG--------------ATCAATTATCAC---tatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaaTGGATTGAC-AGTCAGTGG-----CA---TAAC-----CAACTGAG-TGAGCGGacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTGGATTGACAGTCAGTGGCATAACCAACTGAGTGAGCGGAACATGGC-TA--aacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|16 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTTAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-AATCAC-ATCC------TATCTCCGCAAGTAACTGA-TA--AC-TT------------------GAA---------T-CAGCGGTGAGAGATGAATGATAA---TG-AGA-CACAATGTCGCAT--------ATCAATCATCAT---TGAGACTGTTGTCA-GGA-GG----G-G-ATTTAAACTCACGACCCCTGGATTGAT-AGTCAGACG-----TG---TTAC-----CGACTAAGCTAATTGGGCCTGGC----Ttataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|17 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAGCGTCATTTTTATGCCATCGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCACAGTTT----------------C-------C-TG--G-------------G--AT----------aatactgt
gi|17 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatGGT----AG--A-GAC----TAATGA---TAATGAGATACAATGTCGGATATCAGTCATC-ACAGAGACTGTTGCCAGGC-TGGGATTCGAACTGACGACCCCTGGATTGATAGTTGGACGTGTTACAGTCCCAGCTTCCTGAGACCAAT-TA--GGCAG-TTT--AACCcctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|18 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagCCACCGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACTGTTT--------C-------CTGGGATCC-TG--GAA-----------G--GT----------T----------AAC-TAGTATTC-AAGCAC-ACCC-------ATCTCCGCAAGTTACTGA-TA--AC-TTTTCCAC----------TTAAA---------T-CAGCAGTGAGAGAGGAATGCTAA---TG-AGC-CGCAATGTGGTAT--------ATCAATCATCAC-----AGACTGTGACCG-GAT--G----G-G-ATTCAGACTCATGACACCAAGTTTGAT-AGATGGACA-----C----T-AC-----CTACTGAGCTTACTGGGCagtacca
gi|19 : tatgataaGA-TT--AC-TTTCCCAC----------TT--------------CAGCGGCCAGAGACGAATGTCAA---GG-AGA-CGCAATGTCGTGT--------ATtgtagatattatacaattgttattattatgtgtcac
gi|2 : TTAACGTCATATTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTTTTT--------T-------T-------C-TG--G-------------G--AT----------T----------AAC-CAATACTC-GAGCAC-ACCC------CATCTCTGCAAGTAACTGA-TA--AC-TTTTCCAC----------TTGAA---------T-CAGTGATCAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAAACTGTTGCCG-GAC-GG----G-GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACA-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGTGGT-G--AG--A-GAT----GAATGA---TAATGAGACACAACGTCGTATATCAATCATC-ATGGAGACTGTTGCCAGGCGGGGGATTCGAACTCACGACCTCTGGATTGATAGTCAGACGCGTAACCAACTGAGCTAATCGGGCCCGGC-TG--GA-AATTTTGAAACCnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|20 : CGTCATTTT-ATGCCAGCAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACTCTTT--------C-------C---------TG--G-------------G--AT----------CCTGGAAGGTAAAT-CAGTACTC-TAGCAC--TCT------CATCTCCACAAGTTACTGA-TA--AC-TTTGCCAC----------TTGAA---------T-TAGAGGTAAGAGACAAATGATAA---TA-AGA-CACAATGTCATAT--------ATCAGTCATAAC---GGAGATTGTAGCT--GAC-CG----G-G-ATTCAAACtgtcaacaaggcattgacctttgcctcagaataattcacttatcaagttattgagtgcttttacatgacataaaaactgtcttaaattattttgcacttagtagacattctattcta
gi|21 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc---------T-CAGCGGT----GATGAAT--TAATCTTG-AGA-CG--GTACCATAT--------GTCTGCCATAGC---GGACACTAT
gi|22 : gatgtaaccacttgccattttttggtggaagcagattgcagaatgaatccgaagagaaccgctgctctttcgtaagatactggcaaactatctaaaatagattttatggactgcgcagttcCCGTC----T-AGCGGC-G--AG--A-GAC----GAATGG---TAATGAGACCCGATGTCGTATATCGAACATC-ACGGAGACTGTGATC-GGCCAGGGATTCGTACTCA-G----------TGATAGTCAGACGCGTTACTGACTGAGCTAACTGGGTCCGGCATT--GA-A----TGAAAcaatgactagaatttgtatgatttataattatgttgttaataacccgaaatataaatacactgcaaaatgatgacttctgtagtgattatttcac
gi|23 : taccatAGACGGATGGTAA---TG-AGA-CGCAATATCGTAT--------ATCATTCGTCAC---GGAGACTGTGGCAG-GGA-AG----G-A-A-TCGAACTCAAAACCCCAAATTTGAT-TATCAGACG-----CT---TTAC-----GGACTGATCTAATGGGGCCCGGC----Ttgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|24 : TTGGCGTAATATT-ATGTCGTCGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA--------------------------------TG--A-------------A--ATGT--------T----------AAT-CAGTACTC-GGGCAC-ACCC-------ATCTCC---------CGA-T-------------------------TGAA---------T-CAGCAGTGAGAGACAAATGATAAA--TG-CTA-CACAATGTCGTAT--------ATTA----TCAC---GGAGACAGCGGCTG-GGT-GG----T-G-ATCCGAACTCACGACGTCTGGATTAAA-ATTCGAATATTGTCCG---TGAC-----CTAATGATCCAAacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|25 : atT--------T-------C-------T-TG--GC------------G--GT----------T----------TAC-CAGCACTA-GA-CAC-ATACATGTATCATGGCTGCAAGTCACCAA-CT--AC-TTTCCCAC------------AAA---------TTCAGAGGTGGGAAATTCATGG--A---TGTAGAACACAGT-TCATG---------GCCATTCATCA-----GAGACCACGGTCA-GAC-GG----G-G-ATTCAAACTCACGACCCCTGGACTGTC-AGTT---CG-----AG-------------GACTGAGCTTGCCGGg
gi|27 : agATTGACAGTCAGACAAGCTACTGACTGAGCTAACTGGGCCCAGC-TACTGT-AA--TTGAAagtcgattaaaaaaagagttgaagatttgaa
gi|28 : TTTGTGTAATTTTTATGGCATTGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTT--------CTTGTGATC-------C-TGAAA-------------G--GT----------T----------AAC-CAGTACgtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|3 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatatGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCCGTTT--------T-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACCT-GAGCAC-ACCT------CATCTCACTAAGTAATTGA-TA--AC-TTCCCCAC----------TTGAA---------T-CAGCGGTGAGAGACAAATCATAA---TG-AGA-CACAATATAGTAT--------ATCAATCATCAC---ATAGACTGTTGCTG-GGC-AG----C-G-ATTTGAACCCACAA-CCCTAGATTGAT-AGTCAGACA-----CA---TAAC-----CAACTTAGCTTATCAGGCCTGGCATTTTTATTGGTGG--AGGAA-GACCTCAGAACGAATCCAAGTAGA-ACCAGGTAACAGATAAACTTTCTAAAAAGATTTTTG-AGGGAGCGGGATTTGAACCGACGATC
gi|3 : cgcaatttataaatatC----TTAGCGGT-G--AG--A-GGC----AAGTGA---TCTTGAGAttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|30 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaatcagcggtgagagacaaatcataatgagacacaatatagtatatcaatcatcacatagactgttgctgggcagcgatttgaacccacaaccctagattgatagtcagacacataaccaacttagcttatcaggcctggcatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatATATTTATGTCATTGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACTTTTTACTGTGATC-------C-------T-TG--A-------------A--AT----------TTAACAA----AACACAGTGTTT-AA-CAC-ATAC-------ATCTTCCCAAGTAACCGA-TA--tggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|36 : aactgaatgatttgcttgaC-ATGGAGACTGTGACTGG--TAGGGATTTTATATAACGACC--------AATGGCCTGATGCCCTACCAACTAAGCTATCCGGTCCCTGC-T
gi|37 : AGAATGTGGCAA-GGT-GG----GCG-ATTAAAAATCA-AACCTATAGATTGGT-AGTCAGATGA----CC---T--C-----CAACTGATCAAACAAGGTCC
gi|38 : TCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAACCAACGAACT-CAGCAGTGAGAGATAAAT
gi|39 : ca----------AAC-CAGT--TCAGGGCACAACCT------TTTCTCAGCAAGTCATTGA-CT--AC-TTatct
gi|4 : ttactggaaccctcagggcggtaTTAACGTAATTTTTATGCCATCGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTT---------C-------C-------C-TG--G-------------G--ATCCTGGAAGGTT----------AAC-CAGTACTC-GAGCAC-ATCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAT----------TTGAA---------T-CAGCGGTGAGAGACGAATGACAA---CG-AGA-CGCAATGTGGTAT--------ATCAACCGTCAC---GGAGATTGTGGTCG-GGC-GG----G-G-ATTTTAATTCACGACCCCTGAGTTGAT-AGTCAGACG-----CGC--TAA------CGAATGGGCTAATCGGGCCCGGC----c
gi|41 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatac----G-G-ATTCGAACCCACAACCCCTAAGTC-ATGAGTCCGAGGA----CT---TAAC-----TGa
gi|43 : ATATTTGCGCCATCCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTctcgattaaa
gi|46 : tgacataCG-----TG---TAAT-----TGACTGAGCTAATCGGACCGGGC----T
gi|48 : AGTAGTG-AAGCAC-ACCA-------ATCTCTGCAAGTAACTGA-TA--AC-ATTCTCAtgtactgacaaatat
gi|5 : TTAGCGTCATTTT-ATGGCATCAAGGGCTAAC---------------------------CTA--ACCACTATTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-GAGCAC-ACAC------CATCTCTGCAAGTAACTGA-TA--AC-CTTCCCAC----------TTGAA---------T-ACGTGGTGAAAGACAAATGATAA---TC-AGA-CACAATGTTGTGT--------ATAAATCACCAT---GGAGACTGTTGCCG-GGC-GG----A-G-ATTCAAACTCACGACCCTTGGATTGAT-CGTCAGATG-----CA---TAAC-----CAACTGAGATAATCGCACCCAGC----TTA
gi|50 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTGGATTGAT-AGTCAGATG-----CC---TAAC-----CGACTAAGCTAATCGGGCagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|52 : TTTCATGCCATCGAGGGCTAAA----AG--ATGAT----CTGT
gi|53 : TTTGCGTCATTTT-ATGCCATCGAGGGTTA
gi|54 : atAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|6 : TTAGCATCATCTTTATGCCATCAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------G---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-AACC------CATCTCTGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGC-GG----A-G-ATTCAAACTCACGACCCCTGGATTGAT-AGTCAGAAG-----CG---TAAC-----CGACTGAGCTAATCGGGCCGGGC----T--ACGGT-AACAA--A-GAC----AA
gi|7 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACTCTTT--------C-------CTGTAAACC-TG--GAA-----------G--AT----------T----------AAC-CAATATTT-GAACAC-A-------------------AGTA-CTAA-TA--AC-TTTCCAAA----------TCACA---------T-CAGCGGTGAGAAACGATTGACAA---TA-AGA-GGTAATGTTGTATTAATGTATATCAATCATCAC---AGAGACTGTGGCAG-GGC---------------------ATGACCACTGAATTGAT-AGCCAGACA-----TGCTTTCATGCTTGTGACTGA-CTAA-----CCAGGC----TCA---GT-A--A------------AAATGA---TGATGAG-CATGACctccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|8 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgTTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTG-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAA-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TTA-TTGT-A--AA--ATGAC----GAAagatataaataaaatacaaa
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAGCATCATTTTTATGCCACCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CGTCTCCGTAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TT-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----Tat
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|31 ): TTTTTTATTTTATCGAACAAAAACACGAGTTATATATTAAATAACGTTAACGCTTTGGTGTTGATTGAATATATAGCCTCATATTATGCCACCGATGGCT
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|49 ): CCTGAATATTTAGCATCATATTTATGCCACCAAAAACTAATAA
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555 11111111 1111 111 111 222222222
lowQualScore : 5 3333 22 3333 22 22 1111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 9999999 1 22 1 8888888888 777777777 1 444 1 1 0 66666666 333 1 1 3 3333 1 1 1 8888888888 2 44444 00000000 3333 777 4 9999 111 3 1 1 0 1 8 1 0 777 99 1 0 555 1 2 6 999999999 2
lowQualScore : . .... .. .... .. .. ...................................................................... . . . ....... . .. . .......... ......... . ... . . . ........ ... . . . .... . . . .......... . ..... ........ .... ... . .... ... . . . . . . . . ... .. . . ... . . . ......... .
lowQualScore : 7 7777 44 7777 55 66 6666666666666666666666666666666666666666666666666666666666666666666666 7 7 7 4444444 6 22 7 0000000000 000000000 7 888 7 7 8 33333333 222 0 9 8 9999 8 8 7 2222222222 0 00000 88888888 2222 000 4 4444 777 2 4 4 8 2 0 4 6 888 88 0 8 888 0 2 7 555555555 5
consensus : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
Reference ( family-1040 ) : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
gi|1 : TCAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------A----------AAC-CAGTACTC-GAGCAC-ACCC------AATCTCCGCAAGTAACTGA-TA--AC-TTTCTGAC----------TCGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CATAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GTT-GG----G-G-ACTCGATCTCACGA-CCCTGGATTGAT-AGTCAGACG-----CT---TAAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|10 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTATCGTCATTTTTATACCATCAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGTCCTT--------C-------A-------C-TG--GCGGGATCACAGAAG--GT----------T----------AAC-CAGTACTC-GAGCTC-ACTC-------ATACCCACAAGTAACTGG-TG--AC-TTTCCAAC----------TTAAA---------T-AAACGGTTAGAGACGAATGACAG---AG-AAA-CGCAAT----TAT--------ACCTATCATCACCACGGACTCTAGGGCCC-GGC-GG----G-G-ATTCGGACTCGCGATACTTCGATTTAT-ATTCAGACG-----CG---CTAC-----CAAGTGAGCAAACCGGGTCCGGC-----CAGtgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|11 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGT-----------------GTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCAGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGT-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CAACTGAGCTAATCGGGCCCAGC----Ttaggaaatgtagaggtatgctcataaaataa
gi|12 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaTTAACGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACTGTTT--------C-------C---------TG--A-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCATGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CAAAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGC-GG----G-G-ATTCGAACTTACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGTCCGGC----Tatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|13 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAGCGTTATTTT-ATGCCTTTGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTT--------C-------C-------TGTG--T-------------G--GT----------T----------AAC-CAGTACTC-AAGCAT-ACCC------CTTATCCCCAAGTAACTGA-CA--AC-TCTCCCAC----------TTGAA---------T-CAGTGGCGAGAGACGAATGATAA---TG-AGA-CTCAATGTCGTAT--------ATCAATCATCGC---GGAGACTGTAGCCG-GGC-GGGCGAG-G-ATTTAAACTCACGACCACTGGATTGAT-AGACAGGC------C------AC-----T-ACTGAGATAAGCGGG-TCGGT-------ACGAT-A--AA--A-GAC----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|14 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAGCGTCATTTT-ATGCCATCGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACTGTTT--------C-------CTGGGTT-C-TA--G-------------A--ATGT--------T----------AAC-CAGTACTC-GAGAAC-ACCC------CATCTCCGTAAATAACTGA-TA--AC-TTTCCCAC----------TGGAA---------T-CAGCGGTGAGAGACAAATGATAA---TG-AGA-CGCAATGTCGAAT--------ATCAAACATCAC---GATGATTGTGGCCGAAGC-GT----G-G-ATTTGAACT--------CTGGATTGAC-AGTCAGACG-----CGC--TAA------CGACTGAGCTAATCGGGCCCGGC----TCattgtacaacgtgtataagtgtgtttaaaat
gi|15 : ctacaattgatcgattgattgattatT--------C-------CA------C-TG--G-------------GCGAT----------A----------AAC-CAGTACTA-GA-CAC-A-CC------CAGCTCTGCAAGTCATTGACTACTAC-TTCCCCAC----------AT-AT---------T-CTGAAGTGGGAGACTCATGAT-----TT-AGA--AC-ATG--------------ATCAATTATCAC---tatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaaTGGATTGAC-AGTCAGTGG-----CA---TAAC-----CAACTGAG-TGAGCGGacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTGGATTGACAGTCAGTGGCATAACCAACTGAGTGAGCGGAACATGGC-TA--aacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|16 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTTAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-AATCAC-ATCC------TATCTCCGCAAGTAACTGA-TA--AC-TT------------------GAA---------T-CAGCGGTGAGAGATGAATGATAA---TG-AGA-CACAATGTCGCAT--------ATCAATCATCAT---TGAGACTGTTGTCA-GGA-GG----G-G-ATTTAAACTCACGACCCCTGGATTGAT-AGTCAGACG-----TG---TTAC-----CGACTAAGCTAATTGGGCCTGGC----Ttataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|17 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAGCGTCATTTTTATGCCATCGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCACAGTTT----------------C-------C-TG--G-------------G--AT----------aatactgt
gi|17 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatGGT----AG--A-GAC----TAATGA---TAATGAGATACAATGTCGGATATCAGTCATC-ACAGAGACTGTTGCCAGGC-TGGGATTCGAACTGACGACCCCTGGATTGATAGTTGGACGTGTTACAGTCCCAGCTTCCTGAGACCAAT-TA--GGCAG-TTT--AACCcctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|18 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagCCACCGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACTGTTT--------C-------CTGGGATCC-TG--GAA-----------G--GT----------T----------AAC-TAGTATTC-AAGCAC-ACCC-------ATCTCCGCAAGTTACTGA-TA--AC-TTTTCCAC----------TTAAA---------T-CAGCAGTGAGAGAGGAATGCTAA---TG-AGC-CGCAATGTGGTAT--------ATCAATCATCAC-----AGACTGTGACCG-GAT--G----G-G-ATTCAGACTCATGACACCAAGTTTGAT-AGATGGACA-----C----T-AC-----CTACTGAGCTTACTGGGCagtacca
gi|19 : tatgataaGA-TT--AC-TTTCCCAC----------TT--------------CAGCGGCCAGAGACGAATGTCAA---GG-AGA-CGCAATGTCGTGT--------ATtgtagatattatacaattgttattattatgtgtcac
gi|2 : TTAACGTCATATTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTTTTT--------T-------T-------C-TG--G-------------G--AT----------T----------AAC-CAATACTC-GAGCAC-ACCC------CATCTCTGCAAGTAACTGA-TA--AC-TTTTCCAC----------TTGAA---------T-CAGTGATCAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAAACTGTTGCCG-GAC-GG----G-GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACA-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGTGGT-G--AG--A-GAT----GAATGA---TAATGAGACACAACGTCGTATATCAATCATC-ATGGAGACTGTTGCCAGGCGGGGGATTCGAACTCACGACCTCTGGATTGATAGTCAGACGCGTAACCAACTGAGCTAATCGGGCCCGGC-TG--GA-AATTTTGAAACCnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|20 : CGTCATTTT-ATGCCAGCAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACTCTTT--------C-------C---------TG--G-------------G--AT----------CCTGGAAGGTAAAT-CAGTACTC-TAGCAC--TCT------CATCTCCACAAGTTACTGA-TA--AC-TTTGCCAC----------TTGAA---------T-TAGAGGTAAGAGACAAATGATAA---TA-AGA-CACAATGTCATAT--------ATCAGTCATAAC---GGAGATTGTAGCT--GAC-CG----G-G-ATTCAAACtgtcaacaaggcattgacctttgcctcagaataattcacttatcaagttattgagtgcttttacatgacataaaaactgtcttaaattattttgcacttagtagacattctattcta
gi|21 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc---------T-CAGCGGT----GATGAAT--TAATCTTG-AGA-CG--GTACCATAT--------GTCTGCCATAGC---GGACACTAT
gi|22 : gatgtaaccacttgccattttttggtggaagcagattgcagaatgaatccgaagagaaccgctgctctttcgtaagatactggcaaactatctaaaatagattttatggactgcgcagttcCCGTC----T-AGCGGC-G--AG--A-GAC----GAATGG---TAATGAGACCCGATGTCGTATATCGAACATC-ACGGAGACTGTGATC-GGCCAGGGATTCGTACTCA-G----------TGATAGTCAGACGCGTTACTGACTGAGCTAACTGGGTCCGGCATT--GA-A----TGAAAcaatgactagaatttgtatgatttataattatgttgttaataacccgaaatataaatacactgcaaaatgatgacttctgtagtgattatttcac
gi|23 : taccatAGACGGATGGTAA---TG-AGA-CGCAATATCGTAT--------ATCATTCGTCAC---GGAGACTGTGGCAG-GGA-AG----G-A-A-TCGAACTCAAAACCCCAAATTTGAT-TATCAGACG-----CT---TTAC-----GGACTGATCTAATGGGGCCCGGC----Ttgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|24 : TTGGCGTAATATT-ATGTCGTCGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA--------------------------------TG--A-------------A--ATGT--------T----------AAT-CAGTACTC-GGGCAC-ACCC-------ATCTCC---------CGA-T-------------------------TGAA---------T-CAGCAGTGAGAGACAAATGATAAA--TG-CTA-CACAATGTCGTAT--------ATTA----TCAC---GGAGACAGCGGCTG-GGT-GG----T-G-ATCCGAACTCACGACGTCTGGATTAAA-ATTCGAATATTGTCCG---TGAC-----CTAATGATCCAAacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|25 : atT--------T-------C-------T-TG--GC------------G--GT----------T----------TAC-CAGCACTA-GA-CAC-ATACATGTATCATGGCTGCAAGTCACCAA-CT--AC-TTTCCCAC------------AAA---------TTCAGAGGTGGGAAATTCATGG--A---TGTAGAACACAGT-TCATG---------GCCATTCATCA-----GAGACCACGGTCA-GAC-GG----G-G-ATTCAAACTCACGACCCCTGGACTGTC-AGTT---CG-----AG-------------GACTGAGCTTGCCGGg
gi|27 : agATTGACAGTCAGACAAGCTACTGACTGAGCTAACTGGGCCCAGC-TACTGT-AA--TTGAAagtcgattaaaaaaagagttgaagatttgaa
gi|28 : TTTGTGTAATTTTTATGGCATTGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTT--------CTTGTGATC-------C-TGAAA-------------G--GT----------T----------AAC-CAGTACgtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|3 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatatGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCCGTTT--------T-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACCT-GAGCAC-ACCT------CATCTCACTAAGTAATTGA-TA--AC-TTCCCCAC----------TTGAA---------T-CAGCGGTGAGAGACAAATCATAA---TG-AGA-CACAATATAGTAT--------ATCAATCATCAC---ATAGACTGTTGCTG-GGC-AG----C-G-ATTTGAACCCACAA-CCCTAGATTGAT-AGTCAGACA-----CA---TAAC-----CAACTTAGCTTATCAGGCCTGGCATTTTTATTGGTGG--AGGAA-GACCTCAGAACGAATCCAAGTAGA-ACCAGGTAACAGATAAACTTTCTAAAAAGATTTTTG-AGGGAGCGGGATTTGAACCGACGATC
gi|3 : cgcaatttataaatatC----TTAGCGGT-G--AG--A-GGC----AAGTGA---TCTTGAGAttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|30 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaatcagcggtgagagacaaatcataatgagacacaatatagtatatcaatcatcacatagactgttgctgggcagcgatttgaacccacaaccctagattgatagtcagacacataaccaacttagcttatcaggcctggcatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatATATTTATGTCATTGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACTTTTTACTGTGATC-------C-------T-TG--A-------------A--AT----------TTAACAA----AACACAGTGTTT-AA-CAC-ATAC-------ATCTTCCCAAGTAACCGA-TA--tggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|36 : aactgaatgatttgcttgaC-ATGGAGACTGTGACTGG--TAGGGATTTTATATAACGACC--------AATGGCCTGATGCCCTACCAACTAAGCTATCCGGTCCCTGC-T
gi|37 : AGAATGTGGCAA-GGT-GG----GCG-ATTAAAAATCA-AACCTATAGATTGGT-AGTCAGATGA----CC---T--C-----CAACTGATCAAACAAGGTCC
gi|38 : TCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAACCAACGAACT-CAGCAGTGAGAGATAAAT
gi|39 : ca----------AAC-CAGT--TCAGGGCACAACCT------TTTCTCAGCAAGTCATTGA-CT--AC-TTatct
gi|4 : ttactggaaccctcagggcggtaTTAACGTAATTTTTATGCCATCGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTT---------C-------C-------C-TG--G-------------G--ATCCTGGAAGGTT----------AAC-CAGTACTC-GAGCAC-ATCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAT----------TTGAA---------T-CAGCGGTGAGAGACGAATGACAA---CG-AGA-CGCAATGTGGTAT--------ATCAACCGTCAC---GGAGATTGTGGTCG-GGC-GG----G-G-ATTTTAATTCACGACCCCTGAGTTGAT-AGTCAGACG-----CGC--TAA------CGAATGGGCTAATCGGGCCCGGC----c
gi|41 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatac----G-G-ATTCGAACCCACAACCCCTAAGTC-ATGAGTCCGAGGA----CT---TAAC-----TGa
gi|43 : ATATTTGCGCCATCCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTctcgattaaa
gi|46 : tgacataCG-----TG---TAAT-----TGACTGAGCTAATCGGACCGGGC----T
gi|48 : AGTAGTG-AAGCAC-ACCA-------ATCTCTGCAAGTAACTGA-TA--AC-ATTCTCAtgtactgacaaatat
gi|5 : TTAGCGTCATTTT-ATGGCATCAAGGGCTAAC---------------------------CTA--ACCACTATTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-GAGCAC-ACAC------CATCTCTGCAAGTAACTGA-TA--AC-CTTCCCAC----------TTGAA---------T-ACGTGGTGAAAGACAAATGATAA---TC-AGA-CACAATGTTGTGT--------ATAAATCACCAT---GGAGACTGTTGCCG-GGC-GG----A-G-ATTCAAACTCACGACCCTTGGATTGAT-CGTCAGATG-----CA---TAAC-----CAACTGAGATAATCGCACCCAGC----TTA
gi|50 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTGGATTGAT-AGTCAGATG-----CC---TAAC-----CGACTAAGCTAATCGGGCagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|52 : TTTCATGCCATCGAGGGCTAAA----AG--ATGAT----CTGT
gi|53 : TTTGCGTCATTTT-ATGCCATCGAGGGTTA
gi|54 : atAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|6 : TTAGCATCATCTTTATGCCATCAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------G---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-AACC------CATCTCTGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGC-GG----A-G-ATTCAAACTCACGACCCCTGGATTGAT-AGTCAGAAG-----CG---TAAC-----CGACTGAGCTAATCGGGCCGGGC----T--ACGGT-AACAA--A-GAC----AA
gi|7 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACTCTTT--------C-------CTGTAAACC-TG--GAA-----------G--AT----------T----------AAC-CAATATTT-GAACAC-A-------------------AGTA-CTAA-TA--AC-TTTCCAAA----------TCACA---------T-CAGCGGTGAGAAACGATTGACAA---TA-AGA-GGTAATGTTGTATTAATGTATATCAATCATCAC---AGAGACTGTGGCAG-GGC---------------------ATGACCACTGAATTGAT-AGCCAGACA-----TGCTTTCATGCTTGTGACTGA-CTAA-----CCAGGC----TCA---GT-A--A------------AAATGA---TGATGAG-CATGACctccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|8 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgTTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTG-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAA-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TTA-TTGT-A--AA--ATGAC----GAAagatataaataaaatacaaa
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAGCATCATTTTTATGCCACCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CGTCTCCGTAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TT-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----Tat
blockSeqs : T GCTG TT CTGA TT GG ACTGTGATCCTTGAAATTTAACAA A A A ATGTATC C CT A ATACATTTGT CCAACGAAC T TCT T A TAATGTAT CAC G A G GCGA C G G TTGTCCG T GCTTG ATTTTTAT AAC GGA T CTCA ATC C A C T T T CCA GG C TCT C T A GAAATT G
blockSeqs : T . . . . . CACTGGCGGGATCACAGAAGGTT . . . C . . . . . . A . . . . T . G . . . . TGCTT A . TCAG GG G . . . C G T A . C CTG CA C . A C . CTGTAA G
blockSeqs : T . . . . . CCCTGGGATCCTGGAAGGTT . . . C . . . . . . . . . . . T . . . . . . CGC A . TTAG G G . . . C C G C . A TC GC G . A T . GAA G
blockSeqs : T . . . . . CCTGGGATCCTGAAAGGTT . . . C . . . . . . . . . . . A . . . . . . ACC A . TAG G G . . . . G C . T AG TA A A T .
blockSeqs : T . . . . . CCTGGGATCCTGGAAGGTT . . . C . . . . . . . . . . . G . . . . . . CGC A . TCA G G . . . T C .
blockSeqs : T . . . . . CCTGGGATCCTGGAAGGTA . . . C . . . . . . . . . . . T . . . . . . ACT T . TTA A A . .
blockSeqs : T . . . . . CTTGTGATCCTGAAAGGTT . . . T . . . . . . . . . . . G . . . . . . CG A . TA A A . .
blockSeqs : T . . . . . TCTGGGATCCTGAAAGGTT . . . C . . . . . . . . . . . T . . . . . . CG T . A . . . .
blockSeqs : T . . . . . CCTGGGATCCTGAAAGGTT . . . C . . . . . . . . . . . A . . . . . . CG G .
blockSeqs : T . . . . . CCTGTAAACCTGGAAGATT . . . C . . . . . . . . . . . G . . . . . . CA A .
blockSeqs : C . . . . . CCTGGGTTCTAGAATGTT . . . T . . . . . . . . . . . G . . . . . . TG A .
blockSeqs : T . . . . . CCACTGGGCGATA . . . C . . . . . . . . . . . G . . . . . . CG A .
blockSeqs : T . . . . . CCTGTGTGGTT . . . C . . . . . . . . . . . T . . . . . . CT A .
blockSeqs : T . . . . . TCTTGGCGGTT . . . C . . . . . . . . . . . G . . . . . . AG A .
blockSeqs : . . . . . . TTCTGGGATT . . . C . . . . . . . . . . . G . . . . . . CA A .
blockSeqs : . . . . . . CCTGGGATT . . . C . . . . . . . . . . . T . . . . . . TG A .
blockSeqs : . . . . . . CCTGAGATT . . . . . . . . . . . . . . . T . . . . . . CA C .
blockSeqs : . . . . . . TGAAATGTT . . . . . . . . . . . . . . . G . . . . . . CC A .
blockSeqs : . . . . . . CGTGGGATT . . . . . . . . . . . . . . . T . . . . . . CG A .
blockSeqs : . . . . . . CCTGGGATT . . . . . . . . . . . . . . . T . . . . . . CG . .
blockSeqs : . . . . CCTGGGATT . . . . . . . . . . . . . . . . . . . CG . .
blockSeqs : . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . C . .
blockSeqs : . . .
blockSeqCons : NA
originalCons : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNNGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
finalCons : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNAGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|31 ): TTTTTTATTTTATCGAACAAAAACACGAGTTATATATTAAATAACGTTAACGCTTTGGTGTTGATTGAATATATAGCCTCATATTATGCCACCGATGGCT
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|49 ): CCTGAATATTTAGCATCATATTTATGCCACCAAAAACTAATAA
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555 11111111 1111 111 111 222222222
lowQualScore : 5 3333 22 3333 22 22 1111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 9999999 1 22 1 8888888888 777777777 1 444 1 1 0 66666666 333 1 1 3 3333 1 1 1 8888888888 2 44444 00000000 3333 777 4 9999 111 3 1 1 0 1 8 1 0 777 99 1 0 555 1 2 6 999999999 2
lowQualScore : . .... .. .... .. .. ...................................................................... . . . ....... . .. . .......... ......... . ... . . . ........ ... . . . .... . . . .......... . ..... ........ .... ... . .... ... . . . . . . . . ... .. . . ... . . . ......... .
lowQualScore : 7 7777 44 7777 55 66 6666666666666666666666666666666666666666666666666666666666666666666666 7 7 7 4444444 6 22 7 0000000000 000000000 7 888 7 7 8 33333333 222 0 9 8 9999 8 8 7 2222222222 0 00000 88888888 2222 000 4 4444 777 2 4 4 8 2 0 4 6 888 66 0 8 888 0 2 7 555555555 5
consensus : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNAGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
Reference ( family-1040 ) : TTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C-------C-TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CGCAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTNGCCG-GGC-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGCGGT-G--AG--A-GAC----GAATGA---TAATGAGACACGACGTCGTATATCAATCATC-ACGGAGACTGTTGCCGGGCNAGGGATTCGAACTNACGACCCCTGGATTGATAGTCAGACGCGTTACCGACTGAGCTANCCGGGCCCGGC-TA--GA-AA-TTTGAAACC
gi|1 : TCAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGA--------------CCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------A----------AAC-CAGTACTC-GAGCAC-ACCC------AATCTCCGCAAGTAACTGA-TA--AC-TTTCTGAC----------TCGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CATAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GTT-GG----G-G-ACTCGATCTCACGA-CCCTGGATTGAT-AGTCAGACG-----CT---TAAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|10 : ttcatattattagtatctatatatatattatttattttgattattgtgatgtattatgcgtcttttgaatgatatcgtcttttattgaacatatgttttcgtactctagtgattatcaatttaaaagacgtttcattcacttagtctcgtgcaatgctattcaaacatttatatatttccgtaaacaatcaaaggtgacactctgcatgttcttttttcaaagattgattgattgaatatTATCGTCATTTTTATACCATCAAGGAATAAC----AG--ACGAC----CCGTAA--GCCCA--ACCAGTCCTT--------C-------A-------C-TG--GCGGGATCACAGAAG--GT----------T----------AAC-CAGTACTC-GAGCTC-ACTC-------ATACCCACAAGTAACTGG-TG--AC-TTTCCAAC----------TTAAA---------T-AAACGGTTAGAGACGAATGACAG---AG-AAA-CGCAAT----TAT--------ACCTATCATCACCACGGACTCTAGGGCCC-GGC-GG----G-G-ATTCGGACTCGCGATACTTCGATTTAT-ATTCAGACG-----CG---CTAC-----CAAGTGAGCAAACCGGGTCCGGC-----CAGtgttcaaagagattataacaagtttattcattgtgtttatcagtgaggtct
gi|11 : cttctcattatgaaatatgacagtcggtaataaccggtataagggatttgcttgttttttattgaatatcAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGT-----------------GTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCAGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGT-GG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CAACTGAGCTAATCGGGCCCAGC----Ttaggaaatgtagaggtatgctcataaaataa
gi|12 : ctatgttttttttcagaactgatcaggttgtatgaaaaattattgattgattgaatattaTTAACGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTT--ACCACTGTTT--------C-------C---------TG--A-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CATCTCCGCATGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGCGGTGAGAGACGAATGATAA---TG-AGA-CAAAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGC-GG----G-G-ATTCGAACTTACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGTCCGGC----Tatgaaaaattaaagtgagtttgaatgcctaatatttctgaaactgaaattgctaaactgagcaaaa
gi|13 : tatcgcaagtctcccagttaccatctttacactaagattgattgattgaatatTTAGCGTTATTTT-ATGCCTTTGAGGGCTTAC----AG--ACACT----CAGTTA--ACCCA--ACTACTGTTT--------C-------C-------TGTG--T-------------G--GT----------T----------AAC-CAGTACTC-AAGCAT-ACCC------CTTATCCCCAAGTAACTGA-CA--AC-TCTCCCAC----------TTGAA---------T-CAGTGGCGAGAGACGAATGATAA---TG-AGA-CTCAATGTCGTAT--------ATCAATCATCGC---GGAGACTGTAGCCG-GGC-GGGCGAG-G-ATTTAAACTCACGACCACTGGATTGAT-AGACAGGC------C------AC-----T-ACTGAGATAAGCGGG-TCGGT-------ACGAT-A--AA--A-GAC----ttacactaagatatgttccagctgattgtaggcgtttaaaggtagttaagaagaca
gi|14 : aaacatttaaattttaacaagaagatacatatatacaataaatgattgattgattgaatatTTAGCGTCATTTT-ATGCCATCGAGGGCTAACGCTGAG--ACGAC----CAGTTA--ACCAA--ACCACTGTTT--------C-------CTGGGTT-C-TA--G-------------A--ATGT--------T----------AAC-CAGTACTC-GAGAAC-ACCC------CATCTCCGTAAATAACTGA-TA--AC-TTTCCCAC----------TGGAA---------T-CAGCGGTGAGAGACAAATGATAA---TG-AGA-CGCAATGTCGAAT--------ATCAAACATCAC---GATGATTGTGGCCGAAGC-GT----G-G-ATTTGAACT--------CTGGATTGAC-AGTCAGACG-----CGC--TAA------CGACTGAGCTAATCGGGCCCGGC----TCattgtacaacgtgtataagtgtgtttaaaat
gi|15 : ctacaattgatcgattgattgattatT--------C-------CA------C-TG--G-------------GCGAT----------A----------AAC-CAGTACTA-GA-CAC-A-CC------CAGCTCTGCAAGTCATTGACTACTAC-TTCCCCAC----------AT-AT---------T-CTGAAGTGGGAGACTCATGAT-----TT-AGA--AC-ATG--------------ATCAATTATCAC---tatacaattgaatcactgatgctggttgtcttgggtgtttttcaagatacccttaaagaca
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaaTGGATTGAC-AGTCAGTGG-----CA---TAAC-----CAACTGAG-TGAGCGGacaatggattgacagtcagtggcataaccaactgagtgagcggaacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|15 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTGGATTGACAGTCAGTGGCATAACCAACTGAGTGAGCGGAACATGGC-TA--aacatggctatataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|16 : ttagtcatctaataattagaaggtttgtttgaatagatttattattcacattttgtcaacagcatttcagttacaagatggcagtcaccacacctaattttcattcctggaatccactgggcgataaaccagtactagacacacccagctctgcaagtcattgactactacttccccacatattctgaagtgggagactcatgatttagaacatgatcaattatcacacaaTTAGTGTCATTTTTATGCCATCGAGGGCTAAC----AG--ACTAT----TAGTTT--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-AATCAC-ATCC------TATCTCCGCAAGTAACTGA-TA--AC-TT------------------GAA---------T-CAGCGGTGAGAGATGAATGATAA---TG-AGA-CACAATGTCGCAT--------ATCAATCATCAT---TGAGACTGTTGTCA-GGA-GG----G-G-ATTTAAACTCACGACCCCTGGATTGAT-AGTCAGACG-----TG---TTAC-----CGACTAAGCTAATTGGGCCTGGC----Ttataacaacagggttataatgactttaagtttgctcacctgatacaaaa
gi|17 : acagatttttttgtgcctatatataataccgtttgttgattgattgaatatTTAGCGTCATTTTTATGCCATCGAAGGCTAAC----AG--TTGAT----CAGTTA--ACCTA--ACCACAGTTT----------------C-------C-TG--G-------------G--AT----------aatactgt
gi|17 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatGGT----AG--A-GAC----TAATGA---TAATGAGATACAATGTCGGATATCAGTCATC-ACAGAGACTGTTGCCAGGCT-GGGATTCGAACTGACGACCCCTGGATTGATAGTTGGACGTGTTACAGTCCCAGCTTCCTGAGACCAAT-TA--GGCAG-TTT--AACCcctgaaagggtagagactaatgataatgagatacaatgtcggatatcagtcatcacagagactgttgccaggctgggattcgaactgacgacccctggattgatagttggacgtgttacagtcccagcttcctgagaccaattaggcagtttaaccagtacca
gi|18 : ttctttttgcagctgtatttcagttaatgctgctgattatccttcctgggtttgatttaatatttagcgtcatttttatgccatcgaaggctaacagttgatcagttaacctaaccacagtttcctgggatcctgaaagCCACCGAGGGCTAAC----AA--ATGAA----CAGTTA--ACCTA--ATCACTGTTT--------C-------CTGGGATCC-TG--GAA-----------G--GT----------T----------AAC-TAGTATTC-AAGCAC-ACCC-------ATCTCCGCAAGTTACTGA-TA--AC-TTTTCCAC----------TTAAA---------T-CAGCAGTGAGAGAGGAATGCTAA---TG-AGC-CGCAATGTGGTAT--------ATCAATCATCAC-----AGACTGTGACCG-GAT--G----G-G-ATTCAGACTCATGACACCAAGTTTGAT-AGATGGACA-----C----T-AC-----CTACTGAGCTTACTGGGCagtacca
gi|19 : tatgataaGA-TT--AC-TTTCCCAC----------TT--------------CAGCGGCCAGAGACGAATGTCAA---GG-AGA-CGCAATGTCGTGT--------ATtgtagatattatacaattgttattattatgtgtcac
gi|2 : TTAACGTCATATTTATGCCATCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTTTTT--------T-------T-------C-TG--G-------------G--AT----------T----------AAC-CAATACTC-GAGCAC-ACCC------CATCTCTGCAAGTAACTGA-TA--AC-TTTTCCAC----------TTGAA---------T-CAGTGATCAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAAACTGTTGCCG-GAC-GG----G-GGATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACA-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TCAGTGGT-G--AG--A-GAT----GAATGA---TAATGAGACACAACGTCGTATATCAATCATC-ATGGAGACTGTTGCCAGGCGGGGGATTCGAACTCACGACCTCTGGATTGATAGTCAGACGCGTAACCAACTGAGCTAATCGGGCCCGGC-TG--GA-AATTTTGAAACCnnnnnnnnnnaaaataggattaagctgcaacatattgcaggttacacttatatggcaagttcattggtagaggaagacatcagaatgagtccgagtataaccgctgtccttccacaaataactggtaaagtttctcaaataaagtttttggatcaagctgggctcaaacacgttattgagcaacagcagtgagaaataagctatactgatgtatgcagtatgctttag
gi|20 : CGTCATTTT-ATGCCAGCAAGGGCTAAC----AT--ACAAT----CAGTTA--ACCTA--ACCACTCTTT--------C-------C---------TG--G-------------G--AT----------CCTGGAAGGTAAAT-CAGTACTC-TAGCAC--TCT------CATCTCCACAAGTTACTGA-TA--AC-TTTGCCAC----------TTGAA---------T-TAGAGGTAAGAGACAAATGATAA---TA-AGA-CACAATGTCATAT--------ATCAGTCATAAC---GGAGATTGTAGCT--GAC-CG----G-G-ATTCAAACtgtcaacaaggcattgacctttgcctcagaataattcacttatcaagttattgagtgcttttacatgacataaaaactgtcttaaattattttgcacttagtagacattctattcta
gi|21 : taaacattgcatgcacattaaggagaaaaataatcatttgaagaaatcaattgattgtttgc---------T-CAGCGGT----GATGAAT--TAATCTTG-AGA-CG--GTACCATAT--------GTCTGCCATAGC---GGACACTAT
gi|22 : gatgtaaccacttgccattttttggtggaagcagattgcagaatgaatccgaagagaaccgctgctctttcgtaagatactggcaaactatctaaaatagattttatggactgcgcagttcCCGTC----T-AGCGGC-G--AG--A-GAC----GAATGG---TAATGAGACCCGATGTCGTATATCGAACATC-ACGGAGACTGTGATC-GGCCAGGGATTCGTACTCA-G----------TGATAGTCAGACGCGTTACTGACTGAGCTAACTGGGTCCGGCATT--GA-A----TGAAAcaatgactagaatttgtatgatttataattatgttgttaataacccgaaatataaatacactgcaaaatgatgacttctgtagtgattatttcac
gi|23 : taccatAGACGGATGGTAA---TG-AGA-CGCAATATCGTAT--------ATCATTCGTCAC---GGAGACTGTGGCAG-GGA-AG----G-A-A-TCGAACTCAAAACCCCAAATTTGAT-TATCAGACG-----CT---TTAC-----GGACTGATCTAATGGGGCCCGGC----Ttgaaattgtattacttcacaaaactgagtttttaaatttccgcaatattttctgtcccgtaacaaaaatcgacatgtaccaatttctgactttacaccatatcgggcacacccca
gi|24 : TTGGCGTAATATT-ATGTCGTCGAGGGCAAAC---------CACT----CTGT-----CCTGGGACCA--------------------------------TG--A-------------A--ATGT--------T----------AAT-CAGTACTC-GGGCAC-ACCC-------ATCTCC---------CGA-T-------------------------TGAA---------T-CAGCAGTGAGAGACAAATGATAAA--TG-CTA-CACAATGTCGTAT--------ATTA----TCAC---GGAGACAGCGGCTG-GGT-GG----T-G-ATCCGAACTCACGACGTCTGGATTAAA-ATTCGAATATTGTCCG---TGAC-----CTAATGATCCAAacatgtctatgtaaaaaaaatcaaatgtatatcgttttagtcgaagttcatttcaatatatttgtataaacggacgatatatcaatagctaaaaaccctgacatgcggcaatataaatg
gi|25 : atT--------T-------C-------T-TG--GC------------G--GT----------T----------TAC-CAGCACTA-GA-CAC-ATACATGTATCATGGCTGCAAGTCACCAA-CT--AC-TTTCCCAC------------AAA---------TTCAGAGGTGGGAAATTCATGG--A---TGTAGAACACAGT-TCATG---------GCCATTCATCA-----GAGACCACGGTCA-GAC-GG----G-G-ATTCAAACTCACGACCCCTGGACTGTC-AGTT---CG-----AG-------------GACTGAGCTTGCCGGg
gi|27 : agATTGACAGTCAGACAAGCTACTGACTGAGCTAACTGGGCCCAGC-TACTGT-AA--TTGAAagtcgattaaaaaaagagttgaagatttgaa
gi|28 : TTTGTGTAATTTTTATGGCATTGAGTGCTAAC----AC--AT--T----CAGTTA--ACCTA--ACCACTGTTT--------CTTGTGATC-------C-TGAAA-------------G--GT----------T----------AAC-CAGTACgtattcattaattactggtcacacctgtaatttaaataaatgttattttatatgaattattaacatcagtaaaattgacataccaatttagcgaaatacatttttaat
gi|3 : taaatatacaatttaaaattatcacttgaatatgaacgtattagtgtttgtttaaaatattgattaaatatGAGAGTTAAC----AG--ACGAT----CAGTTA--GCCTA--ATCGCCGTTT--------T-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACCT-GAGCAC-ACCT------CATCTCACTAAGTAATTGA-TA--AC-TTCCCCAC----------TTGAA---------T-CAGCGGTGAGAGACAAATCATAA---TG-AGA-CACAATATAGTAT--------ATCAATCATCAC---ATAGACTGTTGCTG-GGC-AG----C-G-ATTTGAACCCACAA-CCCTAGATTGAT-AGTCAGACA-----CA---TAAC-----CAACTTAGCTTATCAGGCCTGGCATTTTTATTGGTGG--AGGAA-GACCTCAGAACGAATCCAAGTAGA-ACCAGGTAACAGATAAACTTTCTAAAAAGATTTTTG-AGGGAGCGGGATTTGAACCGACGATC
gi|3 : cgcaatttataaatatC----TTAGCGGT-G--AG--A-GGC----AAGTGA---TCTTGAGAttagcggtgagaggcaagtgatcttgagatggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|30 : cgcaatttataaatatgagagttaacagacgatcagttagcctaatcgccgttttctgggatcctgaaaggttaaccagtacctgagcacacctcatctcactaagtaattgataacttccccacttgaatcagcggtgagagacaaatcataatgagacacaatatagtatatcaatcatcacatagactgttgctgggcagcgatttgaacccacaaccctagattgatagtcagacacataaccaacttagcttatcaggcctggcatttttattggtggaggaagacctcagaacgaatccaagtagaaccaggtaacagataaactttctaaaaagatttttgagggagcgggatttgaaccgacgatATATTTATGTCATTGATGGT---C----AGTTAC-AT----TGGTGATTACCTA--ATCACTTTTTACTGTGATC-------C-------T-TG--A-------------A--AT----------TTAACAA----AACACAGTGTTT-AA-CAC-ATAC-------ATCTTCCCAAGTAACCGA-TA--tggcacctaagaccatggagaaccctatatgtggattcaaataatcaatcaatctcaattaatcaatcaataatcaattaattaccaaccaatgcaatgataattacctcgatgttgtggaatcattatcac
gi|36 : aactgaatgatttgcttgaC-ATGGAGACTGTGACTGG--TAGGGATTTTATATAACGACC--------AATGGCCTGATGCCCTACCAACTAAGCTATCCGGTCCCTGC-T
gi|37 : AGAATGTGGCAA-GGT-GG----GCG-ATTAAAAATCA-AACCTATAGATTGGT-AGTCAGATGA----CC---T--C-----CAACTGATCAAACAAGGTCC
gi|38 : TCCGCAAGTAACTGA-CA--ACATTTCTCACATACATTTGTTTGAACCAACGAACT-CAGCAGTGAGAGATAAAT
gi|39 : ca----------AAC-CAGT--TCAGGGCACAACCT------TTTCTCAGCAAGTCATTGA-CT--AC-TTatct
gi|4 : ttactggaaccctcagggcggtaTTAACGTAATTTTTATGCCATCGAGGACTTAT----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTT---------C-------C-------C-TG--G-------------G--ATCCTGGAAGGTT----------AAC-CAGTACTC-GAGCAC-ATCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAT----------TTGAA---------T-CAGCGGTGAGAGACGAATGACAA---CG-AGA-CGCAATGTGGTAT--------ATCAACCGTCAC---GGAGATTGTGGTCG-GGC-GG----G-G-ATTTTAATTCACGACCCCTGAGTTGAT-AGTCAGACG-----CGC--TAA------CGAATGGGCTAATCGGGCCCGGC----c
gi|41 : ttgatatagtagtatttattgaatgtgtataacattcattatttattgtgtatagcactcttggatgtgaatgacgttctttcttgaatgtttataacattcttaagctaaggttcatggtataatgttttaatcaagtagttcagtaagtagattgtacataatcatattattcaaatccattcgtgtggttaatggtgaacccatcatctgaatgactaatac----G-G-ATTCGAACCCACAACCCCTAAGTC-ATGAGTCCGAGGA----CT---TAAC-----TGa
gi|43 : ATATTTGCGCCATCCAGGGCTAAC----AG--ACAATCTGACAGTTA--ATCTctcgattaaa
gi|46 : tgacataCG-----TG---TAAT-----TGACTGAGCTAATCGGACCGGGC----T
gi|48 : AGTAGTG-AAGCAC-ACCA-------ATCTCTGCAAGTAACTGA-TA--AC-ATTCTCAtgtactgacaaatat
gi|5 : TTAGCGTCATTTT-ATGGCATCAAGGGCTAAC---------------------------CTA--ACCACTATTT--------C-------C---------TG--G-------------G--ATCCTGAAAGGTT----------AAC-CAGTACTC-GAGCAC-ACAC------CATCTCTGCAAGTAACTGA-TA--AC-CTTCCCAC----------TTGAA---------T-ACGTGGTGAAAGACAAATGATAA---TC-AGA-CACAATGTTGTGT--------ATAAATCACCAT---GGAGACTGTTGCCG-GGC-GG----A-G-ATTCAAACTCACGACCCTTGGATTGAT-CGTCAGATG-----CA---TAAC-----CAACTGAGATAATCGCACCCAGC----TTA
gi|50 : ttttagaaaaatgagtgatatcacttatccaaatagttgatatcactcattcatttatttcaaatagatgatataatttattcaaatatgtgatattaattatctaattgattgaattgattgattgaatatTGGATTGAT-AGTCAGATG-----CC---TAAC-----CGACTAAGCTAATCGGGCagtattggaataagttggaataagttataggcttaccacctatttaaaaaaataggtgataccaaca
gi|52 : TTTCATGCCATCGAGGGCTAAA----AG--ATGAT----CTGT
gi|53 : TTTGCGTCATTTT-ATGCCATCGAGGGTTA
gi|54 : atAC-----CGACTGAGCTAATCGGGCCCTGC----T
gi|6 : TTAGCATCATCTTTATGCCATCAAGGGCTAAC----TG--ACAAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------G---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-AACC------CATCTCTGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCA-GGC-GG----A-G-ATTCAAACTCACGACCCCTGGATTGAT-AGTCAGAAG-----CG---TAAC-----CGACTGAGCTAATCGGGCCGGGC----T--ACGGT-AACAA--A-GAC----AA
gi|7 : ctctttattcttcgacaagtcgagctaaaaaacaatttattaatagataacggtaacaattttgattgatagattgaatatTTGAAGGCTAAC----AG--ATGAT----CAGTTA--ACATA--ACCACTCTTT--------C-------CTGTAAACC-TG--GAA-----------G--AT----------T----------AAC-CAATATTT-GAACAC-A-------------------AGTA-CTAA-TA--AC-TTTCCAAA----------TCACA---------T-CAGCGGTGAGAAACGATTGACAA---TA-AGA-GGTAATGTTGTATTAATGTATATCAATCATCAC---AGAGACTGTGGCAG-GGC---------------------ATGACCACTGAATTGAT-AGCCAGACA-----TGCTTTCATGCTTGTGACTGA-CTAA-----CCAGGC----TCA---GT-A--A------------AAATGA---TGATGAG-CATGACctccgtcagaatttacaatgtatttaccaaaattctaatgaaaacaaagcaaaaggccaactaaccatgggcaataaatgt
gi|8 : tttaagtctggcttttattttcaatttatgtgttatggaaaccaaatactttaagtatgacttgtaagaatcaagtgtgacataaacaatattaatctaaattaactatctatataacatgTTAGCGTCATTTTTATGCCATCGAGGGCTAAC----AG--ATGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTG-GAGCAC-ACCC------CATCTCCGCAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TG-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAA-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----TTA-TTGT-A--AA--ATGAC----GAAagatataaataaaatacaaa
gi|9 : ctttaatatacaataatatcgtatcggctattgtttccattatcagatatgaactctgcaacattagttggtttattggaaaatttattgttattttttgaatatTTAGCATCATTTTTATGCCACCGAGGGCTAAC----AG--ACGAT----CAGTTA--ACCTA--ACCACTGTTT--------C-------C---------TG--G-------------G--AT----------T----------AAC-CAGTACTC-GAGCAC-ACCC------CGTCTCCGTAAGTAACTGA-TA--AC-TTTCCCAC----------TTGAA---------T-CAGTGGTGAGAGACGAATGATAA---TT-AGA-CACAATGTCGTAT--------ATCAATCATCAC---GGAGACTGTTGCCG-GGCGGG----G-G-ATTCGAACTCACGACCCCTGGATTGAT-AGTCAGACG-----CG---TAAC-----CGACTGAGCTAATCGGGCCCGGC----Tat
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AAGAACACTGTCAACAAAATTTTGTCTAATGAAGAAAATCACATGACCGTTTTGTGTTCAATTAAATGCAATCGAAAAGCCCGCAAGGAGATCTAAAATATTGAAGATTGATGGTGGACAATACTTCTTTGAAATGGGGTATCGCATCACCCATGTCACCAATCATAAAGAACGATTGATTGAATATTTAACGTCAT
Unaligned ( gi|29 ): TTTGTTTGAGTGGATGAATCCTTTTTACGCACCTTTTAACAATATTTCTGTTATTGAACGGTATATTCCTAATAATTGTACCTGGGATTGGCTGGGCAGTTAGTTAGTCAATACACCTCTACTCTAGAAGTCACTGACTACTG
Unaligned ( gi|31 ): TTTTTTATTTTATCGAACAAAAACACGAGTTATATATTAAATAACGTTAACGCTTTGGTGTTGATTGAATATATAGCCTCATATTATGCCACCGATGGCT
Unaligned ( gi|32 ): TTTACAACAAATAGCAGGCTATATGTGTCAAATCTTGTTAAGGAGAATGCCATATTGAGTCAGTAGAACCACCACCTTCCACAAGCAACTGTAAA
Unaligned ( gi|33 ): TGACCCGTTGATCTCTACAGTGAGGGGGACAAGTGATCTTGAGACTTTACCTTAGGCCACGATGGACCTTTAAAAAATATATTTAAAT
Unaligned ( gi|34 ): TCTTATATACAATAATAACGTAACGGCTATTGTTTCCATTATCAGATGGACTCTGTAACATTAGTTGGTTTATTGTAAAATTATTA
Unaligned ( gi|35 ): TCTATCAAACATATGGCCTCGGGCTTATAAAACATATTTCCTGCTCAACTTAAATTGGTGCTCAAAAATAATTTCAAGGATTCATA
Unaligned ( gi|40 ): TTCTACAAGTGACTGGTAAATTCTCTCAGTAAAAATATTCTGATCAAGCCAGGCTCA
Unaligned ( gi|42 ): TATCTACATAAATTAATGACTGATAGATTGAATATTTAGCGTCATTTTATGACAT
Unaligned ( gi|44 ): TCTGGGCGGTTTATCAGCACTGAACACACATCATGTCGGCAAGTCACTGATT
Unaligned ( gi|45 ): CCTTTTATTTTTGATATGTGTTGTGCTGTAGCTAGCCACTACGTACAAGTA
Unaligned ( gi|47 ): TGAGAGGCAAGTGATTGTGAGATGGCAACTTACACCTCGGAAAACCC
Unaligned ( gi|49 ): CCTGAATATTTAGCATCATATTTATGCCACCAAAAACTAATAA
Unaligned ( gi|51 ): AAGTGATCTTGAGAGAGCGCCTAAGACCACAGAGGACCT