lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 222222222222222 2222222222222222222222222222222222222222222 1111111 111 222 22222222 111 1111 222222222 1 5555555555555555555555555555555555555555555555555555555 11 1 1 8888888 1 33 1
lowQualScore : 6 555 0 4 0 22 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 1 4444 444 1 222222222222222 11 33 666 333 6 2 6 11 11 0 9999999999999999999999999999999999999999999 1 1 1111111 33 222 555555 777 00000000 1 000 1 2222 77 77 77 666666666 2 3 3333333333333333333333333333333333333333333333333333333 2 0 33 3 0 7 3333333 6 7 66 6 5 7 7
lowQualScore : . ... . . . .. . ............................................................................................................................................... . . .... ... . ............... .. .. ... ... . . . .. .. . ........................................... . . ....... .. ... ...... ... ........ . ... . .... .. .. .. ......... . . ....................................................... . . .. . . . ....... . . .. . . . .
lowQualScore : 0 999 3 3 9 99 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 2 5555 333 2 999999999999999 88 55 666 111 7 6 5 88 88 9 2222222222222222222222222222222222222222222 7 7 2222222 55 111 000000 444 22222222 3 000 7 1111 99 99 99 777777777 7 5 9999999999999999999999999999999999999999999999999999999 5 8 88 0 0 0 0000000 0 0 77 0 0 3 3
consensus : GGACAAAA--CACCTCACNCTCAT--TTTTGT-ATAGGCG---G--------------AC--------------G--AA----------------T----------TTTA-------CA-AGGCGGACA-AAA-C-C---C-TCACG-----CA--GAT-TT-TATAAGG----------TAGGCGGACA-AAA--CACC-CAC-C----G--CG--A---A--T--T---TT-A-CA-AGGCGGAC-A-AA--ACC--CCTC----------------------AC-GCA------A--A--T--T-T-T-A-----CA-AGGC--GGACA------AAA-CCCACC--------TTATATAATAAA---AAA----T--AA--CAGT--AAGA---------CAAAGTAAAGTTGAAATATT-----T-----T-----------------TTTA----------------TG----ATGTATGCCATCAATACATTT--TNTAAAC-AATCAATATTTCT-ATT---GTTCTTACAATATTCACGAAAGCACTGAAATAATTAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCGTTTTA
Reference ( gi|4 ) : GAACAAAA--CACCTCACTCTCAT--TTTTGT-ATAGGCG---G--------------AC--------------G--AA----------------T----------TTTA-------CA-AGGCGGACA-AAA-C-C---C-TCACG-----CA--GAG-TT-TATAAGGCNNNNNNNNNNAGGCGGACA-AAA--CACC-TAC-C----A--CG--A---A--T--T---TT-A-CA-AGGCGGAC-A-AA--ACC--CCTC----------------------AC-GCA------A--A--T--T-T-T-A-----CA-AGGA--GGACA------AAA---CACC--------TTATATAATAAA---AAA----T--AA--CAGT--AAGA---------CATAGTAAAGTTGAAATATT-----T-----T-----------------TTTA----------------TG----ATGTATGCCATCAATACATTT--TTTAAAC-AATCAATTTTTCTTATTAGTGTTCCTACAATATTCACAAAAGCACTGAAATAATTAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
gi|1 : GGACAAAA--CACCTCACCCTCAT--TTTTGT-AT
gi|14 : aacacctcccGGACAAAA--CACCTCACCCTCTT--TTTTGT-ATAGG-------------------------------------------------------------------------------------CAGACA-AAA-CAC---C-TCCCA-----CA--AAT-TT-TACAAGGCT--------------GACT-AAA--CCCC-TCA-C----A--CT--G---A--T--T---TT-A-CA-AGGCAGAC-A-AA--ACA--CCTC----------------------CT-GTA------A--A--A--T-T-T-A-----CA-AGGT--GGACA------TAA---TACG--------TACTATAATAAA---AAA----T--AA--CAGT--AAGA---------CAAAGTAAAGTTGAAATATT-----T-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACAAAA--CACCTCACCCTCTT--TTTTGT-ATAGG-------------------------------------------------------------------------------------CAGACA-AAA-CAC---C-TCCCA-----CA--AAT-TT-TACAAGGCT--------------GACT-AAA--CCCC-TCA-C----A--CT--G---A--T--T---TT-A-CA-AGGCAGAC-A-AA--ACA--CCTC----------------------CT-GTA------A--A--A--T-T-T-A-----CA-AGGT--GGACA------TAA---TACG--------TACTATAATAAA---AAA----T--AA--CAGT--AAGA---------CAAAGTAAAGTTGAAATATT-----
gi|18 : ggacaaaacacctcccggacaaaacacctcctGGACATAA--CCCCTCACCCTCAT--TTATGT-ATAGAAG---G--------------ACAAAACACCTACCACG--AA----------------T----------TTTA-------CA-AGGCAGACA-AAACC-C---C-TCACT-----CA--GAT-TT-TACAAGG-----------A---GGACA-AAA--TACC-T-C-C----AG-CA--G---A--T--T---TT-A-
gi|19 : ggacaaaacacctcccGGACATAA--CCACTCACTGTCAT--TTTTGT-ATAGGAG---G--------------ACAAAACACCTCCCACG--AA----------------T----------TTTA-------CA-AGGCGGACA-AAACC-C---C-TCCCG-----CA--GAT-TT-TACAAGG-----------A---GGACA-AAA--TACC-T
gi|16 : acaaaacatctcccGGACAAAA--CACCTCACACTCAT--TTTTGT-ATAGGCG---GACAAAACACCTCCCAC--------------G--AA----------------T----------TTTA-------CA-AGGCAGACA-AAACC-C---C-TCACG-----CA--GAccgacttt
gi|16 : acaaaacacctcccGGACAAAA--CACCTCACACTCAT--TTTTGT-ATAGG-------------------------------------------------------------------------------------CGGACA-AAA-CAC---C-TCCCA-----CG--AAT-TT-TACAAGGCA--------------GACA-AAA--CCCC-T---C----A--CG--tgtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|5 : acaaaacacctcccGGACATAA--CACCTTAACCTCAT--TTTTGT-ATAGG----------------------------------------------------------------------------------AGG---ACA-AAA-C---------------------GAA-T---GTAGGACAAAACCCACTA--CGGACA-AAA--CCCCCTAC-A----A--C---A---A--T--T---TA-T-CA-GAGTGGAC-A-AA--ACC--CC-C----------------------AC-ACT------T--C--T--T-T-T-------TA-AAGAGTGGACA------AAA---AACC--------CTACAcagatgtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|25 : aacacctcccGGACTAAA--CATCCCCCGCTCAT--TTTTGT-ATAGGTG---G--------------AC--------------A--AAACACCCCCTACGGT--T----------TTCA-------CA-AGGTGGACA-AAA-C-acaatttatcagagtggacagaaaaccctacattttatttagtattcaataaataagaaaccatgtcaacttttattttattttttattaatgtataacaagtcaaacaattgtatttatagcacatggtgtattataatatgcattacagaaagctaagcacataatactaaatagtacattcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|8 : taggacaaaacacaccctGGACAAAA---ACC-CACTCTAAT--T---------------------------------------------------A----------------T----------TTTC-------CA--GGCGGACA-AAA-A-C---C--CAC--------------CT-TATA------TAATTTGTAGGCGGACA-AAA---ACC-CAC-CTGTGA--CA--A---A--A--T---AT-T-CA-AGGCTGTCGA-AA--ACC--C
gi|13 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattaacttaggcGGACATAA---ACC-CACTCTTAT--TATTGT-CCAGGTG---G--------------AC--------------A--AAATCCCGCCCTATATAGT----------TTTG-------TA--GGCGGACA-AAA-C-C---C--CACC-----T-----G-TT-TATAacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|13 : tttacatggaagacggacaaaaacccaccggacaaaaacccacccaatgattttacataggcGGACAAAA---ACC-CACCC-AATGATTTTAC-ATAGGCG---G--------------AC--------------ATAAACCCAC-----------T----------CTTATTATTGTCC-AGGTGGACA-AAA-T-C---C----CG-----C-------CC-TATA-----TAGTTTTGTAGGCGGACA-AAA--C-CC-CAC-C----tataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|12 : tttacatggaagacggacaaaaacccaccGGACAAAAACTACCTTACTC-AAT--TTGTGT-AAAGGGA---C--------------AC--------------A--AA----------------TACCCAATGTTTTTA-------CA-AGGTGGACA-TAA-----------ACA-----CA-------T-CATA-----CATTTTGCAAGTAGGATA-AAAATCGCCATAC-------------G---A--T--T---TT-G-CA-AGTCGGAT-A-AA--AAC--Ctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|7 : taaatgtaggacaaaaaccacccACAAAA--CCCCTCACGCAGAT--TTT-AC-A-AGGAG---G--------------AC--------------A--AAATTCCTCCCGCAGA--T----------TTTA-------CA-AGGAGGACA-AAA-CAC---C-TCCCG-----CA--AA--TT-TACAAGG-----------AGG---ATA-AAA--CACC-TCC-C----G--TG--A---A--A--T---TT-A-CA-AAGTGGAC-A-TA--ATG--CCTC----------------------CC-Gacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|11 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcagACATAA--CACCTCACCCTCAT--TTTTGT-ATAgaca
gi|17 : ccccagACAAAA------TCGCTCCCAT--GTTTGTCATTGTTATTTG--------------AT--------------GCAAA----------------T----------TTTA-------CA-AGGCAGACA-AAGTC-C---C-TCCCG-----CA--AAA-TT-TTTAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|28 : gacaaaatccatcccactaattttataagctggaaaaaggccctcccatgttattaacaaggttgACAAAA--TCCCTCACGCTCAT--TTCTAT-ATAGGTG---G--------------AC--------------A--AA----------------T----------Tcaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|27 : AAAA--CACTCCACTC--AT--ATTTGT-ATAAACG---G--------------
gi|21 : tgaatgtagaacaataatcacaccggacaaAAA--TCCCTTCCGCTTAT--TTTGAT-ATGAGTG---G--------------AC--------------A--AAATCTTTCTTGTTAA--T----------TTTA-------CA-AGGTTGAGA-AGATC-C---C-TCTTG-----CA--AAT-TT-TACAAGGCtca
gi|13 : tttttgtatgagtggattA----------------T----------TTTA-------CATAGGCGGACATAAA-C-C---C---ACT-----C--------T-TAT-------TATTGTCCAGGTGGACA-AAA--T-CC-CGC-CCT--A--TAT-A---G--T--T---TT-G-TA--GGCGGAC-A-AA--ACC--CCgaacaaaa
gi|7 : tttacatggaagacggacaaaaacccaccggacaaaaacccacccaatg----------TTTA-------CA-AGGCAGACA-AAA-C-C---CCTCACG-----CA--GAT-TT-TACAAGG-----------AGG---ACA-AAA--TTCC-TCC-C----G--CA--G---A--T--T---TT-A-CA-AGGAGGAC-A-AA--ACA--CCTC----------------------CC-GCA------A--A-----T-T-T-A-----CA-AGGA--GGATA------AAA---CACC--------Tacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|10 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaaca----------TTTA-------CA-AGGTGGACA-AAA-C-C---CCTCACG-----CA--GAT-TT-TATAAGG-----------AGG---ACA-AAA--CACC-TCC-C----G--AA--G---A--T--T---TT-A-CA-AAGAGGAC-A-AA--ACA--CCTC----------------------CC-GTG------A--A--A--T-T-T-A-----CA-TAGT--GGACA------TAA---TGCC--------Tcccgtgaaatttacaaagtggacataatgcctcccggaca
gi|17 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcaaaca----------TTAA-------CA-AGGTTGACA-AAA-T-CGCTC-CCATGTTTGTCA--TTG-TTATTTGATGCAAATTTTACAAGGCAGACA-AAG--TCCC-TCC-C----G--CA--A---AATT--T---TT-A-CA-AGCTGGAA-A-AA--ATC--CCTC----------------------ccca
gi|18 : gacaaaatccatcccactaattttataagctggaaaaaggccctcccatgttaCGGACATAAC-C-C---C-TCACC-----CT--CA--TT-TAT-----------GTATAGAAGGACA-AAA--CACC-TAC-C----A--CG--A---A--T--T---TT-A-CA-AGGCAGAC-A-AA--ACC--CCTC----------------------AC-TCA------G--A--T--T-T-T-A-----CA-AGGA--GGACA------AAA---TACC--------Tccatgtgtgccattgttatttg
gi|19 : ggacaaaacacctccCGGACA-TAA-C-CA--C-TCAC-----------------TGT----CATTTTTGTATAGGAGGACA-AAA--CACC-TCC-C----A--CG--A---A--T--T---TT-A-CA-AGGCGGAC-A-AA--ACC--CCTC----------------------CC-GCA------G--A--T--T-T-T-A-----CA-AGGA--GGACA------AAA---TACC--------Tccagcagatttta
gi|16 : acaaaacatctccCGGACA-AAA-CAC---C-TCACA-----C--------T-CAT-------TTTTGTATAGGCGGACA-AAA--CACC-TCC-C----A--CG--A---A--T--T---TT-A-CA-AGGCAGAC-A-AA--ACC--CCTC----------------------AC-GCAGATGTCA--G--T--T-T-T-ATTATTTA-AGAA--AGATGTAATTCAAA---CACCACGTGTGTTCACATGATAAATATAAA----T--AA---AGT--Accgacttt
gi|8 : acaaaacacctccCGGACA-AAA-A-C---C----CA-----CC--GAG-T----------GAATTAACTTAGGCGGACA-AAA---ACC-CAC-T-------CT--A---A--TTAT---TT-T-CC-AGGCGGACAA-AA--ACCCACCTT----------------------AT-ATA------A--T--T--T-G-T----------AGGC--GGACA------AAAACCCACC-----------TGTGACAAA---ATA----TTCAAGGCTGTCGAAAACCCACCTGTCATAATAAA-TTG-ATTATT-----T-----T-----------------TGT-----------------TG----GTGTAT-TAATTAATAT-TTTCATTTAAATAAATTAATttgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|3 : tgtaggacaaaaacccaccCGGACA-AAA-A-C---C--CACC-----CA--GTG-AT-TTTA-----------CATAGGCGGACA-TAA---ACC-CAC-C-------CT--A---A--TTAT---TT-T-CC-AGGTGGAC-A-AA--AAC--CCGC-----------------------C-CTA------T--A--T--A-A-T-A-----CGTAGGC--GGACA------AAAATCTACCTGT-----TTATATATTAcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|13 : gacaaaaacccacCGGACA-AAA-A-C---C--CACC-----CAATGAT-TT-TACA-------------TAGGCGGACA-TAA---ACC-CAC-T-------CT--T---A--T--TA--TT-GTCC-AGGTGGAC-A-AA--ATC--CCGC----------------------CCTATAT-----A--G--T--T-T-T-G-----TA--GGC--GGACA------AAACCCCACCTGT-----TTATAT-ATAActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|2 : tttacatggaagacggacaaaaacccacCGGACA-AAA-T-C---C---ACC-----CA--GTGATT-TTTA-----------CATAGACGGACA-TAA---ATC-CAC-C-------CT--A---A--T--TAT-TT-T-CC-AGGTGGAC-A-AA--AAC--CCGC-----------------------C-CTA------T--A--TTAT-T-T-G-----T--AGGT--GGACA------AAAACCCACCTGT-----TTATAT-ATAActgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|20 : gacaaaaacccacCGGACG-AAA-A-C---C--CACT-----CA--GTGATT-TTTA-----------CTTAGGCGGACA-TAA---ACC-CAC-C----A--TA--ATT-A--T--T---TT---CC-AGGTGGAC-A-AA--AAC--Cctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|17 : caaataccgacGACA-AAA-T-C---CATCCCA-----CT--AAT-TT-TATAAG----CTGGAAAAAGGC-------------CC-TCC-C----A--TG---------T--TA--TT-AACA-AGGTTGAC-A-AA--ATC--GCTCCCATGTTTGTCATTGTTATTTGAT-GCA------A--A--T--T-T-T-A-----CA-AGGC--AGACA------AAG---TCCC--------Ttacctgtttatatattactatgtatatatataagggtt
gi|25 : AGGTGGACA-AAA--CACC-CCC-T----A--CG--G---T--T--T---TC-A-CA-AGGTGGAC-A-AA--ACcccgcaaaatttttacaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|26 : taggacaaaacacaccctggactaaacatcccccgctcatttttgtatGGTGGACA-AAA--AA---TAC-C-------CG--ATTAA--T--T---TT-G-CA-AGTAGGAC-A-AA--ACC--C
gi|21 : GTGGACA-AAA--T--C-TTT-C----T--TGTTA---A--T--T---TT-A-CA-AGGTTGAG-A-AG--ATC--CCTC----------------------TT-GCA------A--A--T--T-T-T-A-----CA-AGGC--GAACA------AAA---acctgttcatttattggatata
gi|8 : tttttgtatgagtggattaaatcccttccgcttattttgatatgaCGGACA-AAA---ACC-CAC-C----GAGTG--A---A--T--TAACTT-A-----GGCGGAC-A-AA--AAC--C--C----------------------AC-TCT------A--A--TTAT-T-T-T-----CC-AGGC--GGACA------AAAACCCACC--------TTATATAAT
gi|3 : tgtaggacaaaaacccaccCGGACA-AAA---ACC-CAC-C----C--AGT-G---A--T--T---TT-A-CATAGGCGGAC-ATAA--ACC-----C----------------------AC-CCT------A--A--TTAT-T-T-T-----CC-AGGT--GGACA------AAAACCCGCC--------CTATATAATAttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|13 : gacaaaaacccacCGGACA-AAA---ACC-CAC-CCA--A--TG------A--T--T---TT-A-CATAGGCGGAC-ATAA--ACC-----C----------------------AC-TCT------T--A--T--TAT-T-GT----CC-AGGT--GGACA------AAATCCCGCC--------CTATATAGTcgtaggcggacaaaaatctacctgtttatatattactatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|2 : tttacatggaagacggacaaaaacccacCGGACA-AAATCCACC-CA-------G--TG--A---T--T--T---TT-A-CATAGACGGAC-ATAA--ATC-----C----------------------AC-CCT------A--A--TTAT-T-T-T-----CC-AGGT--GGACA------AAAACCCGCC--------CTATATTATtttgtaggcggacaaaaccccacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|20 : gacaaaaacccacCGGACG-AAA---ACC-CACTC----AG-TG--A---T--T--T---TT-A-CTTAGGCGGAC-ATAA--ACC--CACC----------------------A---TA------ATTA--T--T-T-T-------CC-AGGT--GGACA------AAAACCTACCTGT-----TTATATATTAttgtaggtggacaaaaacccacctgtttatatataactatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|25 : caaataccgacGGACT-AAA--CATC-CCC-C----G--CT--C---A--T--T---TTTG-TATAGGTGGAC-A-AAACACC--CCCT----------------------AC-G-----------G--T--T-T-TCA-----CA-AGGT--GGACA------AAA---Cctatgtatatatataagggtt
gi|12 : taggacaaaacacaccctGGACACAAA--TACC-CA-------A--TG--T------T--T---TT-A-CA-AGGTGGAC-ATAA--ACA--CATC----------------------AT-AC----------A--T--T-T-T-G-----CA-AGTA--GGATA------AAA---
gi|17 : taaatgtaggacaaaaaccacccggacaaaaactaccttactcaatttgtgtaaag--CA--A---A--T--T---TT-A-CA-AGGCAGAC-A-AA--GTC--CCTC----------------------CC-GCA------A--AATT--T-T-T-A-----CA-AGCT--GGAAA------AAA---TCCC--------Tatcgccatacgattttgcaagtcggataaaaaccacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|28 : gacaaaatccatcccactaattttataagctggaaaaaggccctcccatgttattaacaaggttgacaaaatcgctcccatgtttgtcattgttatttgatgAC-A-AA--ATC--CCTC----------------------AC-GCT------C--A--T--T-TCT-A-----TATAGGT--GGACA------AAcccatgtgtgccattgttatttg
gi|11 : AA---TACC--------TAATATAATAAA---A-A----T--AA--CAGT--AAGT---------CAAAGTAAAGTTTTAATATTAAAGATCCATAT-----------------TTTA----------------TGTATTATGTATGCCATCAACACAtt
gi|6 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntACC--------TTATAGAATAAA---AAA----T--AA--CAGT--AAGA---------CAAAGTAAAGTTTAAATATT-----T-----T-----------------ATTAAAGATCAGTATTTTTTTA----ATGTATGCCATCAATACATTT--TTTAAAC-AATCAATATTTCT-ATT---GTTCTTACAATATTCACAAAAGCACTGAAATAATTGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATA
gi|1 : tATATAATAAA---AAAAAAAT--AA--CAGT--AAGA---------CAAAGTAAAGTTGAAATATT-----T-----TATTAAAGATCCGTATATTTTA----------------TA----ATGTATGCCATCAATACATTT--TGTAAAC-AATCAATATTTCT-ATT---GTTCTTATAATATTCATGAAAACACTGAAATAATTAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|9 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaTCAATACATTT--TGTAAAT-AATCAATATTTCT-ATT---GTTCTTACAATATTCACAAAAGCACTGAAATAATGAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): GAGAAGAACAACACACCTACTCAAATGTGTATATGTGGACAAAAATCAGCCCATGTGTTTCCAAGGTGCACATCCTCCATCAATTTTGCGACTAGGACAAAGCCAT
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|24 ): AAACCCACCTGTGACAAAATATTAAAGGCTGACGAAAACCCACCTGTCATAATAAATTGATTATTTTTGTTGGTATATTAATTGCATTATTTTCA
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555 1111 11111111111 44444444444444 1111 44444444444444444444444444444444444444 111 1111111111111111111 11 111 111111111 11 999999999999999999999999999999999999999999999 22222 111 111 111 11 11
lowQualScore : 44 3 1 1 7777777777777777777777777777777777777777777777777 44 6666666 4 3333 2 88 2 66666666666 2 4 2 0 11111111111111 3 1 8888 666 22222222222222222222222222222222222222 55 000 1 3 1 5 22 22 4444444444444444444 22 11 3 2 44 1 999999 2 444 1 444 3 2 9999 66 66 66 4 777777777 4 4 11 222222222222222222222222222222222222222222222 1 5 0 77 3 888 8 00000 444 8 444 8 444 11 0 88 3 3 2
lowQualScore : .. . . . ................................................. .. ....... . .... . .. . ........... . . . . .............. . . .... ... ...................................... .. ... . . . . .. .. ................... .. .. . . .. . ...... . ... . ... . . .... .. .. .. . ......... . . .. ............................................. . . . .. . ... . ..... ... . ... . ... .. . .. . . .
lowQualScore : 22 1 0 2 7777777777777777777777777777777777777777777777777 66 5555555 0 8888 1 99 1 66666666666 1 2 1 2 55555555555555 0 7 4444 444 00000000000000000000000000000000000000 00 000 8 6 8 5 55 44 7777777777777777777 33 99 3 5 00 7 555555 0 000 2 777 6 0 4444 11 11 11 4 888888888 4 4 33 555555555555555555555555555555555555555555555 7 0 1 99 0 333 0 00000 000 0 000 0 000 00 8 55 2 2 0
consensus : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------AC-----GAA--------------T----------TT--TACAAGGC-------GGACA-AAA-C--C-C-TC-AC---GCA--G--ATT-T-T-ACAAGG----------TAGGCGGACA-AAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACC--CCTCNC-G---CA-A--A--T--T--TTA-CA-AGGCGGAC--A-AAA-CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
Reference ( family-1023 ) : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------AC-----GAA--------------T----------TT--TACAAGGC-------GGACA-AAA-C--C-C-TC-AC---GCA--G--ATT-T-T-ATAAGG----------TAGGCGGACA-AAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACC--CCTCAC-G---CA-A--A--T--T--TTA-CA-AGGCGGAC--A-AAA-CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCGTTTTA
gi|1 : GGACAAAA--CAC-CTCACCCTCATTTTTGTAT
gi|1 : aacacctcccATATAATA---AA-AAAAAAAT--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----TATTAAAGATCCGTATATTTTA-TA----ATGTATGCCATCAA-TACATTT--TGTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTATAATAT---TCAT-GAAAACACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacga---CA-A--A--CA-T--TTA-CA-AGGTGGAC--A-AAA-CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcat----------TT--TACAAGGT-------GGACA-AAA-C--C-CCTC-AC---GCA--G--ATT-T-T-ATAAGG-----------AGG---ACA-AAA---CACC---TCC-------------------C--G--AAG----A-----T--T---TTA-CA-AAGAGGAC-A-AAACA--CCTCCC-G---TG-A--A--A--T--TTA-CA-TAGTGGAC--A-TAA-ctcacgcagattttataaggaggacaaaacacctcccgaagattttacaaagaggacaaaacacctcccgtgaaatttacatagtggacataatgcctccca
gi|11 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcaaacaGACATAA--CAC-CTCACCCTCATTTTTGTATAtgcctccca
gi|11 : ccccaAC-C---TAATATAATA---AA-A-A----T--AA--CAGT--A-AGT---------CA-AAGTAA-AGTTTTAATAT----TAAAGATCCATAT-----------------TTTA-TGTATTATGTATGCCATCAA-CACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|12 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatC-------GGACA-AAAACTAC-C-TT-AC---TCA-----ATT-TGT-GTAAAG---------------GGACACAAA---TACC---CAA-------------------T--G--T------------T--T---TTA-CA-AGGTGGAC-ATAAACA--CATCAT-A---C-----A--T--T--TTG-CA-AGTAGGAT--A-AAA-AT---CGC-C-----ATACGAT
gi|12 : taaatgtaggacaaaaaccaccGGACAAAAACTAC-CTTACTC-AATTTGTGTAAAGGGAC--------------AC-----AAA--------------TACCCAATGTTTT--TACAAGGT-------GGACATAAA-CA-C-A-TC-AT---AC------ATT-T-T-GCAA-G----------TA---GGATA-AAA-----------AT-------------------C--G--CCATACGA-----T--T---TTG-CA-AGTCGGAT-A-AAAAC-----CAC-C---CA-A--------T--TCA-TA-TGGTGTGC--A-GAA-tttgcaagtcggataaaaaccacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|13 : taaatgtaggacaaaaaccacccT-T-T-ACATGG----------AAGACGGACA-AAA----ACC---CAC-------------------C--G----------------------------------GAC-A-AAAAC--C--CAC-C---CA-ATGA--T--T--TTA-CATAGGCGGAC--ATAAA-CC---CACTC---TTATattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|13 : C-------GGACA-AAA-A--C-C--C-AC---CCAATG--ATT-T-T-ACA-------------TAGGCGGACA-TAA----ACC---CAC-------------------T-----CTT----A-----T--TA--TTGTCC-AGGTGGAC-A-AAATC--CCGCCCTA---TATA--G--T--T--TTG-TA--GGCGGAC--A-AAACCC---CAC-CTGTTTATAT------------A----T--AA--CTGT--GTATA---------TATATATAAGAGTT---ATAC----T-----G-----T----------------------CA----ATATATAATATTACTTACATTT--TGTAAGTT-AATAAATATtattgtccaggtggacaaaatcccgccctatatagttttgtaggcggacaaaaccccacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|14 : tttacatggaagacggacaaaaacccacGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------AC-----AAA----------------------------------------------ACA--------C-C-TC-CC---ACA--A--ATT-T-T-ACAAGG--------------CTGACT-AAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACA--CCTCCT-G---TA-A--A--A--T--TTA-CA-AGGTGGAC--A-TAA-T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----aacatttaactt
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------AC-----AAA----------------------------------------------ACA--------C-C-TC-CC---ACA--A--ATT-T-T-ACAAGG--------------CTGACT-AAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACA--CCTCCT-G---TA-A--A--A--T--TTA-CA-AGGTGGAC--A-TAA-T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----
gi|16 : ggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACACTCATTTTTGTATAGGCGGACAAAACACCTCCCAC-----GAA--------------T----------TT--TACAAGGC-------AGACA-AAACC--C-C-TC-AC---GCA--G--AT
gi|17 : acaaaacacctccc--------------AC-----TAA--------------T----------TT--TATAAGCT-------GGAAA-AAGGC--C-C-TC-CC-----------ATG-T-T-ATTAAC----------AAGGTTGACA-AAATCGCTCC---CATGTTTGTCATTGTTATTTGAT--G--CAA----A-----T--T---TTA-CA-AGGCAGAC-A-AAGTC--CCTCCC-G---CA-A--AATT--T--TTA-CA-AGCTGGAA--A-AAA-TC---Cgtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|18 : gacaaaatccatcccC-------GGACATAAC-C--C-C-TC-AC---CCT--C--ATT-TAT-GTA-------------TAGAAGGACA-AAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCAGAC-A-AAACC--CCTCAC-T---CA-G--A--T--T--TTA-CA-AGGAGGAC--A-AAA------TAC-C---Tctcccatgtgtgccattgttatttg
gi|19 : ggacaaaacacctccC-------GGACA-TAA-C--CAC-TC-ACT--GTC--A--TTT-T-T-GTA-------------TAGGAGGACA-AAA---CACC---TCC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACC--CCTCCC-G---CA-G--A--T--T--TTA-CA-AGGAGGAC--A-AAA------TAC-C---Tccagcagatttta
gi|2 : acaaaacatctccC-------GGACA-AAA-T--C-C----AC---CCA--GTGATT-T-TTACA-------------TAGACGGACA-TAA----ATC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAAC--CCGC-C-C---TA-T--A--TTAT--TTG-T--AGGTGGACA-A-AAA-CC---CAC-CTGTTTATAT-ATA---Accgacttt
gi|20 : gacaaaaacccacCGGACG-AAA----ACC---CAC-------------------TCAG--TGA----T-----T--T---TTA-CTTAGGCGGAC-ATAAACC--CACCA------TA-ATTA--T--T--TT--CC-AGGTGGACA-A-AAA-CC---TAC-CTGTTTATATATTA---ctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|21 : caaataccgacGGATTAAA--TCC-CTTCCGCTTATTTTGATATGAGTGG--------------AC-----AAAATCTTTCTTGTTAAT----------TT--TACAAGGT-------TGAGA-AGATC--C-C-TC-TT---GCA--A--ATT-T-T-ACA--------------AGGCGAACA-AAA---ctatgtatatatataagggtt
gi|24 : tttttgtatgagtA-A--A--T--A--TTA--A-AGGCTGACG-A-AAA-CC---CAC-C---TGTCATAATA---AA-
gi|25 : aaacccacctgtgacaGGACTAAA--CAT-CCCCCGCTCATTTTTGTATAGGTGG--------------AC-----AAAACACCCCCTACGGTT----------TT--CACAAGGT-------GGACA-AAA-C--ttgattatttttgttggtatattaattgcattattttca
gi|26 : taggacaaaacacaccctGGTGGACA-AAA---AAT-----AC-------------------C-----CGATTA-A-----T--T---TTG-CA-AGTAGGAC-A-AAACC--C
gi|27 : GGACAAAA--AACACTC-CACTCATATTTGTATAAACGG--------------acctgttcatttattggatata
gi|28 : tgaatgtagaacaataatcacaccACAAAA--TCC-CTCACGCTCATTTCTATATAGGTGG--------------AC-----AAA--------------T----------Ttca
gi|3 : CGGACA-AAA----ACC---CAC-------------------CCAG--TGA----------T--T---TTA-CATAGGCGGAC-ATAAACC--C---AC-C---CT-A--A--T--TATTTT-CC-AGGTGGAC--A-AAAACC---CGC-C---CTATATAATA---
gi|3 : gacaaaaacccacC-------GGACA-AAA-A--C-C--C-AC---CCA--GTGATT-T-T-ACA-------------TAGGCGGACA-TAA----ACC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAAC--CCGCCC-----TA-T--A--T--A--ATA-CGTAGGCGGACA-A-AAA-TC---TAC-CTGTTTATATATTA---cgtaggcggacaaaaatctacctgtttatatattactatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|4 : gacaaaaacccacGAACAAAA--CAC-CTCACTCTCATTTTTGTATAGGCGG--------------AC-----GAA--------------T----------TT--TACAAGGC-------GGACA-AAA-C--C-C-TC-AC---GCA--G--AGT-T-T-ATAAGGCNNNNNNNNNNAGGCGGACA-AAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACC--CCTCAC-G---CA-A--A--T--T--TTA-CA-AGGAGGAC--A-AAA-C-----AC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-TAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATTTTTCTT-----ATTAGTGT-TCCTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|5 : GGACATAA--CAC-CTTAACCTCATTTTTGTATAGGAGG--------------ACAAAACGAA--------------T----------GTAGGACAAAACCCACTACGGACA-AAA-C--C-C-CCTAC---A-A--C--AAT-T-T-ATCAGA-------------GTGGACA-AAA---CCCC---CAC--------------------------------ACTTCTT--T---TTA-AA-GAGTGGAC-A-AAAAA--CCCTACAA---CA-A--------T--TTATCA-GAGTGGACAGA-AAA-CCCTACAT-T---TTATTTAGTATTCAATAAA----T--AA--------G-AAA---------CC-ATGTCA-ACTTT---TATTTTAT-----T-----T-----------------TTTATTA----ATGTATAACA--AG-T----------CAAA-C-AATT-GTATTTA-TAGCACAT---GGTGTATTATAATATGCATTACAGAAAG--CTAAGCACATAATACTA--AATAGTACATT
gi|6 : aacacctcccAC-C---TTATAGAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTTAAATAT----T-----T-----TATTAAAGATCAGTATT-TTTT-TA----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATAcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|7 : t---CA-A--A--CA-T--TTA-CA-AGGCAGAC--A-AAA-CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcat----------TT--TACAAGGC-------AGACA-AAA-C--C-CCTC-AC---GCA--G--ATT-T-T-ACAAGG-----------AGG---ACA-AAA---TTCC---TCC-------------------C--G--CAG----A-----T--T---TTA-CA-AGGAGGAC-A-AAACA--CCTCCC-G---CA-A--A-----T--TTA-CA-AGGAGGAT--A-AAA------CAC-C---Tctcacgcagattttacaaggaggacaaaattcctcccgcagattttacaaggaggacaaaacacctcccgcaaatttacaaggaggataaaacacctcccgtgaaatttacaaagtggacataatgcctcccggaca
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacaGACAAAA--CCC-CTCACGC------------AG---------------------------A--------------T----------TT--TACAAGGA-------GGACA-AAA-TT-C-C-TC-CC---GCA--G--ATT-T-T-ACAAGG-----------AGG---ACA-AAA---CACC---TCC-------------------C--G--CAA----A-----T--T---T-A-CA-AGGAGGAT-A-AAACA--CCTCCC-G---TG-A--A--A--T--TTA-CA-AAGTGGAC--A-TAA-cccgtgaaatttacaaagtggacataatgcctcccggaca
gi|8 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcaCGGACA-AAA----ACC---CAC-------------------C--GAGTGA----A-----T--TAACTTA-----GGCGGAC-A-AAAAC--C--CAC-T---CT-A--A--TTAT--TTT-CC-AGGCGGACA-A-AAA-CC---CAC-C---TTATATAATtgcctcccggaca
gi|8 : tgtaggacaaaaacccaccC-------GGACA-AAA-A--C-C--C-ACCGAGTG--A--ATT-------AACT----------TAGGCGGACA-AAA----ACC---CAC-------------------T-----CTA----A-----TTAT---TTT-CC-AGGCGGACAA-AAACCCACCTTAT-A---TA-A--T--T--T--GT-----AGGCGGACA-A-AAA-CC---CAC-C------TGTGACA---AA-ATA----TTCAAGGCTGTCGA-AAACCCACCTGTCA-TAATAA-A-TTG-ATTAT----T-----T-----T-----------------TGT--TG----GTGTAT-TAATTAA-TAT-TTTCATTTAAA-TAAATTAATttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|8 : tgtaggacaaaaacccaccAGGC-------GGACA-AAA-A--C-C--C-AC---TCT--A--ATTAT-T-TTC-------------CAGGCGGACA-AAA----ACC---CAC-------------------C--T--TAT----A-----TAAT---TTG-TA--GGCGGAC-A-AAAAC--CCACCT-GTGACA-A--A--A--T--ATT-CA-AGGCTGTCG-A-AAA-CC---CAC-C---TGTCATAATA---AA-caaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|9 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattaacttTCAA-TACATTT--TGTAAA-T-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--GAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAttgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAGAAGAACAACACACCTACTCAAATGTGTATATGTGGACAAAAATCAGCCCATGTGTTTCCAAGGTGCACATCCTCCATCAATTTTGCGACTAGGACAAAGCCAT
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG
Alignments
lowQualScore : 55555555555555555555555555555555555555555555 111 222222222222 55555555555555555555555 1111 111 44444444444444444444444444444444 111 11111 11 11111111111 111 111111111 11 999999999999999999999999999999999999999999999 22222 111 111 111 11 11
lowQualScore : 44 3 1 1 66666666666666666666666666666666666666666666 44 6666 9999999 3 222 1 99 22 111111111111 2 2 333 11111111111111111111111 5555 000 22222222222222222222222222222222 44444 55 000 1 7 3 3 1 1 11111 3 44 88888 1 1 33 1 1 44 11111111111 444 0 444 3 2 9999 66 66 66 4 777777777 4 4 11 222222222222222222222222222222222222222222222 1 5 0 77 3 888 8 00000 444 8 444 8 444 11 0 88 3 3
lowQualScore : .. . . . ............................................ .. .... ....... . ... . .. .. ............ . . ... ....................... .... ... ................................ ..... .. ... . . . . . . ..... . .. ..... . . .. . . .. ........... ... . ... . . .... .. .. .. . ......... . . .. ............................................. . . . .. . ... . ..... ... . ... . ... .. . .. . .
lowQualScore : 22 1 0 2 00000000000000000000000000000000000000000000 22 1111 3333333 6 111 9 55 22 666666666666 0 0 222 88888888888888888888888 4444 000 22222222222222222222222222222222 55555 00 000 8 3 5 5 7 0 00000 3 66 66666 7 7 44 7 5 00 33333333333 777 4 777 6 0 4444 11 11 11 4 888888888 4 4 33 555555555555555555555555555555555555555555555 7 0 1 99 0 333 0 00000 000 0 000 0 000 00 8 55 2 2
consensus : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACA----AG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCC-CTCCC-G---CA-A--A--T--T-T-TA-CA-AGGCGGAC--AAAA------CC---CACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
Reference ( family-1023 ) : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACA----AG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCC-CTCNC-G---CA-A--A--T--T-T-TA-CA-AGGCGGAC--AAAA------CC---CACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
gi|1 : GGACAAAA--CAC-CTCACCCTCATTTTTGTAT
gi|1 : aacacctcccATATAATA---AA-AAAAAAAT--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----TATTAAAGATCCGTATATTTTA-TA----ATGTATGCCATCAA-TACATTT--TGTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTATAATAT---TCAT-GAAAACACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacga---CA-A--A--CA-T-T-TA-CA-AGGTGGAC--AAAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcat----------TT--TACA----AG-------GTGGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-TAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--AAG----A-----T--T---TTA-CA-AAGAGGAC-A-AAACAC-CTCCC-G---TG-A--A--A--T-T-TA-CA-TAGTGGAC--ATAA------ctcacgcagattttataaggaggacaaaacacctcccgaagattttacaaagaggacaaaacacctcccgtgaaatttacatagtggacataatgcctccca
gi|11 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcaaacaGACATAA--CAC-CTCACCCTCATTTTTGTATAtgcctccca
gi|11 : ccccaACC---TAATATAATA---AA-A-A----T--AA--CAGT--A-AGT---------CA-AAGTAA-AGTTTTAATAT----TAAAGATCCATAT-----------------TTTA-TGTATTATGTATGCCATCAA-CACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|12 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatGGACAAAAACTAC-CTTACTC-AATTTGTGTAAAGGGAC--------------ACAAA--------------TACCCAATGTTTT--TACA----AG-------GTGGACATAAA-CAC-A-TC-AT---AC-------ATT-T-T-G-CAA-G----------TA--------GGATAAAA-----------AT-------------------C--G--CCATACGA-----T--T---TTG-CA-AGTCGGAT-A-AAAACC-
gi|13 : taaatgtaggacaaaaaccaccc----------TT--TACATGGAAG-------ACGGACA-AAA-A-C-C--C-AC-----------------------------------------C-----GGACAAAA----ACC---CAC-------------------C-----CAATG--A-----T--T---TTA-CATAGGCGGAC-ATAAACCCACTCTT-----------A--T--TAT-TGTCC-AGGTGGAC--AAAAT-----CC---CGCC---CTATATAGTacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|13 : CGGACA-AAA-A-C-C--C-AC---CC-AATG--ATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------T-----CTT----A-----T--TA--TTGTCC-AGGTGGAC-A-AAATCC-CGCCCTA---TATA--G--T--T-T-TG-TA--GGCGGAC--AAAAC-----CC---CACCTGTTTATAT------------A----T--AA--CTGT--GTATA---------TATATATAAGAGTT---ATAC----T-----G-----T----------------------CA----ATATATAATATTACTTACATTT--TGTAAGTT-AATAAATATtttgtaggcggacaaaaccccacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|14 : tttacatggaagacggacaaaaacccacGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACAC-CTCCC-A---CA-A--A--T--T-T-TA-CA-AGGCTGAC--TAAA------CC---Caacatttaactt
gi|14 : tGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA--------------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACAC-CTCCT-G---TA-A--A--A--T-T-TA-CA-AGGTGGAC--ATAA------T-----ACG---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatattt
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACAC-CTCCC-A---CA-A--A--T--T-T-TA-CA-AGGCTGAC--TAAA------CC---C
gi|15 : GGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA--------------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACAC-CTCCT-G---TA-A--A--A--T-T-TA-CA-AGGTGGAC--ATAA------T-----ACG---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatatt
gi|16 : ggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACACTCATTTTTGTATAGGCGGACAAAACACCTCCCACGAA--------------T----------TT--TACA----AG-------GCAGACA-AAACC-C-C-TC-AC---GC-A--G--AT
gi|17 : acaaaacacctcccGAC-A-AAATCC-ATCCC-A---CT-A--A--T--T-T-TA-TA-AGCTGGA---AAAAGGCCCTCC---CATG---TTAT-TAACA---Agtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|17 : --------------ACTAA--------------T----------TT--TATA----AG-------CTGGAAA-AAGGC-C-C-TC--C----C-A--T--GTTAT-T-AACAAGG----------T---------TGACAAAATCGCTCC---CATGTTTGTCATTGTTATTTGAT--G--CAA----A-----T--T---TTA-CA-AGGCAGAC-A-AAGTCC-CTCCC-G---CA-A--AATT--T-T-TA-CA-AGCTGGAA--AAAA------TC---Cggttgacaaaatcgctcccatgtttgtcattgttatttgatgcaaattttacaaggcagacaaagtccctcccgcaaaatttttacaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|18 : gacaaaatccatcccCGGACATAAC-C-C-C-TC-AC---CC-T--C--ATT-TAT-G-TA-------------TAGAA-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCAGAC-A-AAACCC-CTCAC-T---CA-G--A--T--T-T-TA-CA-AGGAGGAC--AAAA-----------TACC---Tctcccatgtgtgccattgttatttg
gi|19 : ggacaaaacacctccCGGACA-TAA-C-CAC-TC-ACT--GT-C--A--TTT-T-T-G-TA-------------TAGGA-----GGACAAAA---CACC---TCC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCC-CTCCC-G---CA-G--A--T--T-T-TA-CA-AGGAGGAC--AAAA-----------TACC---Tccagcagatttta
gi|2 : acaaaacatctccCGGACA-AAA-T-C-C----AC---CC-A--GTGATT-T-TTA-CA-------------TAGAC-----GGACATAA----ATC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACC-CGCCC-----TA-T--A--TTAT-T-TG-T--AGGTGGACA-AAAA------CC---CACCTGTTTATAT-ATA---Accgacttt
gi|20 : gacaaaaacccacC-----GGACGAAA----ACC---CAC-------------------TCAG--TGA----T-----T--T---TTA-CTTAGGCGGAC-ATAAACCC---ACC-A---TA-ATTA--T--T-T-T--CC-AGGTGGACA-AAAA------CC---TACCTGTTTATATATTA---ctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|21 : caaataccgacGGATTAAA--TCC-CTTCCGCTTATTTTGATATGAGTGG--------------ACAAAATCTTTCTTGTTAAT----------TT--TACA----AG-------GTTGAGA-AGATC-C-C-TC-TT---GC-A--A--ATT-T-T-A-CA--------------AGGC-----GAACAAAA---ctatgtatatatataagggtt
gi|24 : tttttgtatgagtA-A--A--T--A-T-TA--A-AGGCTGACG-AAAA------CC---CACC---TGTCATAATA---AA-
gi|25 : aaacccacctgtgacaGGACTAAA--CAT-CCCCCGCTCATTTTTGTATAGGTGG--------------ACAAAACACCCCCTACGGTT----------TT--CACA----AG-------GTGGACA-AAA-C-ttgattatttttgttggtatattaattgcattattttca
gi|26 : taggacaaaacacaccctGGT-----GGACAAAA---AAT-----AC-------------------C-----CGATTA-A-----T--T---TTG-CA-AGTAGGAC-A-AAACCC-
gi|27 : GGACAAAA--AACACTC-CACTCATATTTGTATAAACGG--------------acctgttcatttattggatata
gi|28 : tgaatgtagaacaataatcacaccACAAAA--TCC-CTCACGCTCATTTCTATATAGGTGG--------------ACAAA--------------T----------Ttca
gi|3 : CGGACA-AAA-A-C-C--C-AC---CC-A--GTGATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACC-CGCCC-----TA-T--A--T--A-A-TA-CGTAGGCGGACA-AAAA------TC---TACCTGTTTATATATTA---
gi|4 : gacaaaaacccacGAACAAAA--CAC-CTCACTCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACA----AG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--AGT-T-T-A-TAAGGCNNNNNNNNNNAGGC-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCC-CTCAC-G---CA-A--A--T--T-T-TA-CA-AGGAGGAC--AAAA------C-----ACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-TAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATTTTTCTT-----ATTAGTGT-TCCTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|5 : GGACATAA--CAC-CTTAACCTCATTTTTGTATAGGAGGACAAA---------ACGAA--------------T----------GTAGGACA----AAACCCACTACGGACA-AAA-C-C-C-CCTAC---A--A--C--AAT-T-T-A-TCAG-------------AGT-----GGACAAAA---CCCC---CAC--------------------------------ACTTCTT--T---TTA-AA-GAGTGGACAA-AAAACC-CTACA-A---CA-A--------T-T-TATCA-GAGTGGACAGAAAA------CCCTACATT---TTATTTAGTATTCAATAAA----T--AA--------G-AAA---------CC-ATGTCA-ACTTT---TATTTTAT-----T-----T-----------------TTTATTA----ATGTATAACA--AG-T----------CAAA-C-AATT-GTATTTA-TAGCACAT---GGTGTATTATAATATGCATTACAGAAAG--CTAAGCACATAATACTA--AATAGTACATT
gi|6 : aacacctcccACC---TTATAGAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTTAAATAT----T-----T-----TATTAAAGATCAGTATT-TTTT-TA----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATAcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|7 : t---CA-A--A--CA-T-T-TA-CA-AGGCAGAC--AAAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcat----------TT--TACA----AG-------GCAGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---TTCC---TCC-------------------C--G--CAG----A-----T--T---TTA-CA-AGGAGGAC-A-AAACAC-CTCCC-G---CA-A--A-----T-T-TA-CA-AGGAGGAT--AAAA-----------CACC---Tctcacgcagattttacaaggaggacaaaattcctcccgcagattttacaaggaggacaaaacacctcccgcaaatttacaaggaggataaaacacctcccgtgaaatttacaaagtggacataatgcctcccggaca
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacaGACAAAA--CCC-CTCACGC------------AG----------------------A--------------T----------TT--TACA----AG-------GAGGACA-AAA-TTC-C-TC-CC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--CAA----A-----T--T---T-A-CA-AGGAGGAT-A-AAACAC-CTCCC-G---TG-A--A--A--T-T-TA-CA-AAGTGGAC--ATAA------cccgtgaaatttacaaagtggacataatgcctcccggaca
gi|8 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcaC-----GGACAAAA----ACC---CAC-------------------C--GAGTGA----A-----T--TAACTTA-----GGCGGAC-A-AAAACC-CACTC-----TA-ATTA--T--T-T-T--CC-AGGCGGACA-AAAA------CC---CACC---TTATATAATtgcctcccggaca
gi|8 : tgtaggacaaaaacccaccCGGACA-AAA-A-C-C--C-ACCGAGT-G--A--ATT--------AACT----------TAGGC-----GGACAAAA----ACC---CAC-------------------T-----CTA----A-----TTAT---TTT-CC-AGGCGGACAA-AAACCC-ACCTT-A---TATA--A--T--T-TGT-----AGGCGGACA-AAAA------CC---CACC------TGTGACA---AA-ATA----TTCAAGGCTGTCGA-AAACCCACCTGTCA-TAATAA-A-TTG-ATTAT----T-----T-----T-----------------TGT--TG----GTGTAT-TAATTAA-TAT-TTTCATTTAAA-TAAATTAATttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|8 : tgtaggacaaaaacccacc----AG-------GCGGACA-AAA-A-C-C--C-AC---TCTA--ATTATT-T-T-C-CA---------------GGC-----GGACAAAA----ACC---CAC-------------------C--T--TAT----A-----TAAT---TTG-TA--GGCGGAC-A-AAAACC-CACCT-GTGACA-A--A--A--T-A-TT-CA-AGGCTGTCG-AAAA------CC---CACC---TGTCATAATA---AA-caaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|9 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattaacttTCAA-TACATTT--TGTAAA-T-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--GAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAttgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAGAAGAACAACACACCTACTCAAATGTGTATATGTGGACAAAAATCAGCCCATGTGTTTCCAAGGTGCACATCCTCCATCAATTTTGCGACTAGGACAAAGCCAT
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG
Alignments
lowQualScore : 55555555555555555555555555555555555555555555 1111111 111 111111111111 44444444444444444444444 1111 111 44444444444444444444444444444444444444 111 11 111 111111111 11 999999999999999999999999999999999999999999999 22222 111 111 111 11 11
lowQualScore : 44 3 1 1 66666666666666666666666666666666666666666666 44 0000000 3 222 2 88 22 888888888888 2 2 222 66666666666666666666666 5555 000 11111111111111111111111111111111111111 55 000 1 5 1 1 0 0 1 99999 3 99999999 1 1 3 0 44 1 99999999999 2 444 0 444 3 2 9999 66 66 66 4 777777777 4 4 11 222222222222222222222222222222222222222222222 1 5 0 77 3 888 8 00000 444 8 444 8 444 11 0 88 3 3
lowQualScore : .. . . . ............................................ .. ....... . ... . .. .. ............ . . ... ....................... .... ... ...................................... .. ... . . . . . . . ..... . ........ . . . . .. . ........... . ... . ... . . .... .. .. .. . ......... . . .. ............................................. . . . .. . ... . ..... ... . ... . ... .. . .. . .
lowQualScore : 22 1 0 2 99999999999999999999999999999999999999999999 66 0000000 8 000 0 00 88 444444444444 0 0 111 77777777777777777777777 4444 000 44444444444444444444444444444444444444 00 000 8 5 7 7 8 5 9 88888 3 22222222 7 7 3 8 00 7 66666666666 1 777 4 777 6 0 4444 11 11 11 4 888888888 4 4 33 555555555555555555555555555555555555555555555 7 0 1 99 0 333 0 00000 000 0 000 0 000 00 8 55 2 2
consensus : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
Reference ( family-1023 ) : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
gi|1 : GGACAAAA--CAC-CTCACCCTCATTTTTGTAT
gi|1 : aacacctcccATATAATA---AA-AAAAAAAT--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----TATTAAAGATCCGTATATTTTA-TA----ATGTATGCCATCAA-TACATTT--TGTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTATAATAT---TCAT-GAAAACACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacga---CA-A--A--CA-TT-TA-CA-AGGTGGAC--A-AAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcat----------TT--TACAAG-------GTGGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-TAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--AAG----A-----T--T---TTA-CA-AAGAGGAC-A-AAACACCTCC-C-G---TG-A--A--A--TT-TA-CA-TAGTGGAC--A-TAA------ctcacgcagattttataaggaggacaaaacacctcccgaagattttacaaagaggacaaaacacctcccgtgaaatttacatagtggacataatgcctccca
gi|11 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcaaacaGACATAA--CAC-CTCACCCTCATTTTTGTATAtgcctccca
gi|11 : ccccaAC-C---TAATATAATA---AA-A-A----T--AA--CAGT--A-AGT---------CA-AAGTAA-AGTTTTAATAT----TAAAGATCCATAT-----------------TTTA-TGTATTATGTATGCCATCAA-CACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|12 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatGGACAAAAACTAC-CTTACTC-AATTTGTGTAAAGGGAC--------------ACAAA--------------TACCCAATGTTTT--TACAAG-------GTGGACATAAA-CAC-A-TC-AT---AC-------ATT-T-T-G-CAA-G----------TA--------GGATAAAA-----------AT-------------------C--G--CCATACGA-----T--T---TTG-CA-AGTCGGAT-A-AAAACC
gi|13 : taaatgtaggacaaaaaccacccT-T-T-A-CATGG----------AAGAC-----GGACAAAA----ACC---CAC-------------------C--G----------------------------------GAC-A-AAAACCCACC-------CA-ATGA--T--TT-TA-CATAGGCGGAC--ATAAA------CC---CACTC---TTATacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|13 : CGGACA-AAA-A-C-C--C-AC---CC-AATG--ATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------T-----CTT----A-----T--TA--TTGTCC-AGGTGGAC-A-AAATCCCGCC-CTA---TATA--G--T--TT-TG-TA--GGCGGAC--A-AAAC-----CC---CAC-CTGTTTATAT------------A----T--AA--CTGT--GTATA---------TATATATAAGAGTT---ATAC----T-----G-----T----------------------CA----ATATATAATATTACTTACATTT--TGTAAGTT-AATAAATATtattgtccaggtggacaaaatcccgccctatatagttttgtaggcggacaaaaccccacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|14 : tttacatggaagacggacaaaaacccacGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACACCTCC-C-A---CA-A--A--T--TT-TA-CA-AGGCTGAC--T-AAA------CC---Caacatttaactt
gi|14 : tGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA----------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--A-TAA------T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatattt
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACACCTCC-C-A---CA-A--A--T--TT-TA-CA-AGGCTGAC--T-AAA------CC---C
gi|15 : GGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA----------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--A-TAA------T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatatt
gi|16 : ggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACACTCATTTTTGTATAGGCGGACAAAACACCTCCCACGAA--------------T----------TT--TACAAG-------GCAGACA-AAACC-C-C-TC-AC---GC-A--G--AT
gi|17 : acaaaacacctcccGAC-A-AAATCCATCC-C-A---CT-A--A--T--TT-TA-TA-AGCTGGA---A-AAAGGCCCTCC---CAT-G---TTAT-TAACA---Agtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|17 : --------------ACTAA--------------T----------TT--TATAAG-------CTGGAAA-AAGGC-C-C-TC--C----C-A--T--GTTAT-T-AACAAGG----------T---------TGACAAAATCGCTCC---CATGTTTGTCATTGTTATTTGAT--G--CAA----A-----T--T---TTA-CA-AGGCAGAC-A-AAGTCCCTCC-C-G---CA-A--AATT--TT-TA-CA-AGCTGGAA--A-AAA------TC---Cggttgacaaaatcgctcccatgtttgtcattgttatttgatgcaaattttacaaggcagacaaagtccctcccgcaaaatttttacaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|18 : gacaaaatccatcccCGGACATAAC-C-C-C-TC-AC---CC-T--C--ATT-TAT-G-TA-------------TAGAA-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCAGAC-A-AAACCCCTCA-C-T---CA-G--A--T--TT-TA-CA-AGGAGGAC--A-AAA-----------TAC-C---Tctcccatgtgtgccattgttatttg
gi|19 : ggacaaaacacctccCGGACA-TAA-C-CAC-TC-ACT--GT-C--A--TTT-T-T-G-TA-------------TAGGA-----GGACAAAA---CACC---TCC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-G--A--T--TT-TA-CA-AGGAGGAC--A-AAA-----------TAC-C---Tccagcagatttta
gi|2 : acaaaacatctccCGGACA-AAA-T-C-C----AC---CC-A--GTGATT-T-TTA-CA-------------TAGAC-----GGACATAA----ATC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--TTATT-TG-T--AGGTGGACA-A-AAA------CC---CAC-CTGTTTATAT-ATA---Accgacttt
gi|20 : gacaaaaacccacC-----GGACGAAA----ACC---CAC-------------------TCAG--TGA----T-----T--T---TTA-CTTAGGCGGAC-ATAAACCC--AC-C-A---TA-ATTA--T--TT-T--CC-AGGTGGACA-A-AAA------CC---TAC-CTGTTTATATATTA---ctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|21 : caaataccgacGGATTAAA--TCC-CTTCCGCTTATTTTGATATGAGTGG--------------ACAAAATCTTTCTTGTTAAT----------TT--TACAAG-------GTTGAGA-AGATC-C-C-TC-TT---GC-A--A--ATT-T-T-A-CA--------------AGGC-----GAACAAAA---ctatgtatatatataagggtt
gi|24 : tttttgtatgagtA-A--A--T--AT-TA--A-AGGCTGACG-A-AAA------CC---CAC-C---TGTCATAATA---AA-
gi|25 : aaacccacctgtgacaGGACTAAA--CAT-CCCCCGCTCATTTTTGTATAGGTGG--------------ACAAAACACCCCCTACGGTT----------TT--CACAAG-------GTGGACA-AAA-C-ttgattatttttgttggtatattaattgcattattttca
gi|26 : taggacaaaacacaccctGGT-----GGACAAAA---AAT-----AC-------------------C-----CGATTA-A-----T--T---TTG-CA-AGTAGGAC-A-AAACCC
gi|27 : GGACAAAA--AACACTC-CACTCATATTTGTATAAACGG--------------acctgttcatttattggatata
gi|28 : tgaatgtagaacaataatcacaccACAAAA--TCC-CTCACGCTCATTTCTATATAGGTGG--------------ACAAA--------------T----------Ttca
gi|3 : CGGACA-AAA-A-C-C--C-AC---CC-A--GTGATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--T--AA-TA-CGTAGGCGGACA-A-AAA------TC---TAC-CTGTTTATATATTA---
gi|4 : gacaaaaacccacGAACAAAA--CAC-CTCACTCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--AGT-T-T-A-TAAGGCNNNNNNNNNNAGGC-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCA-C-G---CA-A--A--T--TT-TA-CA-AGGAGGAC--A-AAA------C-----AC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-TAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATTTTTCTT-----ATTAGTGT-TCCTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|5 : GGACATAA--CAC-CTTAACCTCATTTTTGTATAGGAGGACAAA---------ACGAA--------------T----------GTAGGACAAAACCCACTACGGACA-AAA-C-C-C-CCTAC---A--A--C--AAT-T-T-A-TCAG-------------AGT-----GGACAAAA---CCCC---CAC--------------------------------ACTTCTT--T---TTA-AA-GAGTGGACAA-AAAACCCTAC-A-A---CA-A--------TT-TATCA-GAGTGGACAGA-AAA------CCCTACAT-T---TTATTTAGTATTCAATAAA----T--AA--------G-AAA---------CC-ATGTCA-ACTTT---TATTTTAT-----T-----T-----------------TTTATTA----ATGTATAACA--AG-T----------CAAA-C-AATT-GTATTTA-TAGCACAT---GGTGTATTATAATATGCATTACAGAAAG--CTAAGCACATAATACTA--AATAGTACATT
gi|6 : aacacctcccAC-C---TTATAGAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTTAAATAT----T-----T-----TATTAAAGATCAGTATT-TTTT-TA----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATAcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|7 : t---CA-A--A--CA-TT-TA-CA-AGGCAGAC--A-AAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcat----------TT--TACAAG-------GCAGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---TTCC---TCC-------------------C--G--CAG----A-----T--T---TTA-CA-AGGAGGAC-A-AAACACCTCC-C-G---CA-A--A-----TT-TA-CA-AGGAGGAT--A-AAA-----------CAC-C---Tctcacgcagattttacaaggaggacaaaattcctcccgcagattttacaaggaggacaaaacacctcccgcaaatttacaaggaggataaaacacctcccgtgaaatttacaaagtggacataatgcctcccggaca
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacaGACAAAA--CCC-CTCACGC------------AG----------------------A--------------T----------TT--TACAAG-------GAGGACA-AAA-TTC-C-TC-CC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--CAA----A-----T--T---T-A-CA-AGGAGGAT-A-AAACACCTCC-C-G---TG-A--A--A--TT-TA-CA-AAGTGGAC--A-TAA------cccgtgaaatttacaaagtggacataatgcctcccggaca
gi|8 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcaC-----GGACAAAA----ACC---CAC-------------------C--GAGTGA----A-----T--TAACTTA-----GGCGGAC-A-AAAACCCACT-C-----TA-ATTA--T--TT-T--CC-AGGCGGACA-A-AAA------CC---CAC-C---TTATATAATtgcctcccggaca
gi|8 : tgtaggacaaaaacccaccCGGACA-AAA-A-C-C--C-ACCGAGT-G--A--ATT--------AACT----------TAGGC-----GGACAAAA----ACC---CAC-------------------T-----CTA----A-----TTAT---TTT-CC-AGGCGGAC-A-AAAACCCACCTT-A---TATA--A--T--TTGT-----AGGCGGACA-A-AAA------CC---CAC-C------TGTGACA---AA-ATA----TTCAAGGCTGTCGA-AAACCCACCTGTCA-TAATAA-A-TTG-ATTAT----T-----T-----T-----------------TGT--TG----GTGTAT-TAATTAA-TAT-TTTCATTTAAA-TAAATTAATttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|8 : tgtaggacaaaaacccaccAG-------GCGGACA-AAA-A-C-C--C-AC---TCTA--ATTATT-T-T-C-CA---------------GGC-----GGACAAAA----ACC---CAC-------------------C--T--TAT----A-----TAAT---TTG-TA--GGCGGAC-A-AAAACCCACC-T-GTGACA-A--A--A--TA-TT-CA-AGGCTGTCG-A-AAA------CC---CAC-C---TGTCATAATA---AA-caaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|9 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattaacttTCAA-TACATTT--TGTAAA-T-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--GAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAttgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAGAAGAACAACACACCTACTCAAATGTGTATATGTGGACAAAAATCAGCCCATGTGTTTCCAAGGTGCACATCCTCCATCAATTTTGCGACTAGGACAAAGCCAT
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG
Alignments
lowQualScore : 55555555555555555555555555555555555555555555 1111111 111 111111111111 44444444444444444444444 1111 111 44444444444444444444444444444444444444 111 11 111 111111111 11 999999999999999999999999999999999999999999999 22222 111 111 111 11 11
lowQualScore : 44 3 1 1 66666666666666666666666666666666666666666666 44 0000000 3 222 2 88 22 888888888888 2 2 222 66666666666666666666666 5555 000 11111111111111111111111111111111111111 55 000 1 5 1 1 0 0 1 99999 3 99999999 1 1 3 0 44 1 99999999999 2 444 0 444 3 2 9999 66 66 66 4 777777777 4 4 11 222222222222222222222222222222222222222222222 1 5 0 77 3 888 8 00000 444 8 444 8 444 11 0 88 3 3
lowQualScore : .. . . . ............................................ .. ....... . ... . .. .. ............ . . ... ....................... .... ... ...................................... .. ... . . . . . . . ..... . ........ . . . . .. . ........... . ... . ... . . .... .. .. .. . ......... . . .. ............................................. . . . .. . ... . ..... ... . ... . ... .. . .. . .
lowQualScore : 22 1 0 2 99999999999999999999999999999999999999999999 66 0000000 8 000 0 00 88 444444444444 0 0 111 77777777777777777777777 4444 000 44444444444444444444444444444444444444 00 000 8 5 7 7 8 5 9 88888 3 22222222 7 7 3 8 00 7 66666666666 1 777 4 777 6 0 4444 11 11 11 4 888888888 4 4 33 555555555555555555555555555555555555555555555 7 0 1 99 0 333 0 00000 000 0 000 0 000 00 8 55 2 2
consensus : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
Reference ( family-1023 ) : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
gi|1 : GGACAAAA--CAC-CTCACCCTCATTTTTGTAT
gi|1 : aacacctcccATATAATA---AA-AAAAAAAT--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----TATTAAAGATCCGTATATTTTA-TA----ATGTATGCCATCAA-TACATTT--TGTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTATAATAT---TCAT-GAAAACACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacga---CA-A--A--CA-TT-TA-CA-AGGTGGAC--A-AAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcat----------TT--TACAAG-------GTGGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-TAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--AAG----A-----T--T---TTA-CA-AAGAGGAC-A-AAACACCTCC-C-G---TG-A--A--A--TT-TA-CA-TAGTGGAC--A-TAA------ctcacgcagattttataaggaggacaaaacacctcccgaagattttacaaagaggacaaaacacctcccgtgaaatttacatagtggacataatgcctccca
gi|11 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcaaacaGACATAA--CAC-CTCACCCTCATTTTTGTATAtgcctccca
gi|11 : ccccaAC-C---TAATATAATA---AA-A-A----T--AA--CAGT--A-AGT---------CA-AAGTAA-AGTTTTAATAT----TAAAGATCCATAT-----------------TTTA-TGTATTATGTATGCCATCAA-CACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|12 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatGGACAAAAACTAC-CTTACTC-AATTTGTGTAAAGGGAC--------------ACAAA--------------TACCCAATGTTTT--TACAAG-------GTGGACATAAA-CAC-A-TC-AT---AC-------ATT-T-T-G-CAA-G----------TA--------GGATAAAA-----------AT-------------------C--G--CCATACGA-----T--T---TTG-CA-AGTCGGAT-A-AAAACC
gi|13 : taaatgtaggacaaaaaccacccT-T-T-A-CATGG----------AAGAC-----GGACAAAA----ACC---CAC-------------------C--G----------------------------------GAC-A-AAAACCCACC-------CA-ATGA--T--TT-TA-CATAGGCGGAC--ATAAA------CC---CACTC---TTATacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|13 : CGGACA-AAA-A-C-C--C-AC---CC-AATG--ATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------T-----CTT----A-----T--TA--TTGTCC-AGGTGGAC-A-AAATCCCGCC-CTA---TATA--G--T--TT-TG-TA--GGCGGAC--A-AAAC-----CC---CAC-CTGTTTATAT------------A----T--AA--CTGT--GTATA---------TATATATAAGAGTT---ATAC----T-----G-----T----------------------CA----ATATATAATATTACTTACATTT--TGTAAGTT-AATAAATATtattgtccaggtggacaaaatcccgccctatatagttttgtaggcggacaaaaccccacctgtttatatataactgtgtatatatatataagagttatactgtcaatatataatattacttacattttgtaagttaataaatataacatttaactt
gi|14 : tttacatggaagacggacaaaaacccacGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACACCTCC-C-A---CA-A--A--T--TT-TA-CA-AGGCTGAC--T-AAA------CC---Caacatttaactt
gi|14 : tGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA----------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--A-TAA------T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatattt
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACA-AAA-CAC-C-TC-CC---G-----G--A---------CAAAA----------CA--CCTCCTGGACAAAA---CACCT--CAC-------------------C--C--TCT----T-----T--T---TTG-TATAGGCAGAC-A-AAACACCTCC-C-A---CA-A--A--T--TT-TA-CA-AGGCTGAC--T-AAA------CC---C
gi|15 : GGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAG--------------ACAAA----------------------------------------------ACA-------C-C-TC-CC---AC-A--A--ATT-T-T-A-CAAGG--------------C-----TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--A-TAA------T-----AC-G---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----ctcacactgattttacaaggcagacaaaacacctcctgtaaaatttacaaggtggacataatacgtactataataaaaaataacagtaagacaaagtaaagttgaaatatt
gi|16 : ggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACACTCATTTTTGTATAGGCGGACAAAACACCTCCCACGAA--------------T----------TT--TACAAG-------GCAGACA-AAACC-C-C-TC-AC---GC-A--G--AT
gi|17 : acaaaacacctcccGAC-A-AAATCCATCC-C-A---CT-A--A--T--TT-TA-TA-AGCTGGA---A-AAAGGCCCTCC---CAT-G---TTAT-TAACA---Agtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|17 : --------------ACTAA--------------T----------TT--TATAAG-------CTGGAAA-AAGGC-C-C-TC--C----C-A--T--GTTAT-T-AACAAGG----------T---------TGACAAAATCGCTCC---CATGTTTGTCATTGTTATTTGAT--G--CAA----A-----T--T---TTA-CA-AGGCAGAC-A-AAGTCCCTCC-C-G---CA-A--AATT--TT-TA-CA-AGCTGGAA--A-AAA------TC---Cggttgacaaaatcgctcccatgtttgtcattgttatttgatgcaaattttacaaggcagacaaagtccctcccgcaaaatttttacaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|18 : gacaaaatccatcccCGGACATAAC-C-C-C-TC-AC---CC-T--C--ATT-TAT-G-TA-------------TAGAA-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCAGAC-A-AAACCCCTCA-C-T---CA-G--A--T--TT-TA-CA-AGGAGGAC--A-AAA-----------TAC-C---Tctcccatgtgtgccattgttatttg
gi|19 : ggacaaaacacctccCGGACA-TAA-C-CAC-TC-ACT--GT-C--A--TTT-T-T-G-TA-------------TAGGA-----GGACAAAA---CACC---TCC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-G--A--T--TT-TA-CA-AGGAGGAC--A-AAA-----------TAC-C---Tccagcagatttta
gi|2 : acaaaacatctccCGGACA-AAA-T-C-C----AC---CC-A--GTGATT-T-TTA-CA-------------TAGAC-----GGACATAA----ATC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--TTATT-TG-T--AGGTGGACA-A-AAA------CC---CAC-CTGTTTATAT-ATA---Accgacttt
gi|20 : gacaaaaacccacC-----GGACGAAA----ACC---CAC-------------------TCAG--TGA----T-----T--T---TTA-CTTAGGCGGAC-ATAAACCC--AC-C-A---TA-ATTA--T--TT-T--CC-AGGTGGACA-A-AAA------CC---TAC-CTGTTTATATATTA---ctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|21 : caaataccgacGGATTAAA--TCC-CTTCCGCTTATTTTGATATGAGTGG--------------ACAAAATCTTTCTTGTTAAT----------TT--TACAAG-------GTTGAGA-AGATC-C-C-TC-TT---GC-A--A--ATT-T-T-A-CA--------------AGGC-----GAACAAAA---ctatgtatatatataagggtt
gi|24 : tttttgtatgagtA-A--A--T--AT-TA--A-AGGCTGACG-A-AAA------CC---CAC-C---TGTCATAATA---AA-
gi|25 : aaacccacctgtgacaGGACTAAA--CAT-CCCCCGCTCATTTTTGTATAGGTGG--------------ACAAAACACCCCCTACGGTT----------TT--CACAAG-------GTGGACA-AAA-C-ttgattatttttgttggtatattaattgcattattttca
gi|26 : taggacaaaacacaccctGGT-----GGACAAAA---AAT-----AC-------------------C-----CGATTA-A-----T--T---TTG-CA-AGTAGGAC-A-AAACCC
gi|27 : GGACAAAA--AACACTC-CACTCATATTTGTATAAACGG--------------acctgttcatttattggatata
gi|28 : tgaatgtagaacaataatcacaccACAAAA--TCC-CTCACGCTCATTTCTATATAGGTGG--------------ACAAA--------------T----------Ttca
gi|3 : CGGACA-AAA-A-C-C--C-AC---CC-A--GTGATT-T-T-A-CA-------------TAGGC-----GGACATAA----ACC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--T--AA-TA-CGTAGGCGGACA-A-AAA------TC---TAC-CTGTTTATATATTA---
gi|4 : gacaaaaacccacGAACAAAA--CAC-CTCACTCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--AGT-T-T-A-TAAGGCNNNNNNNNNNAGGC-----GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCA-C-G---CA-A--A--T--TT-TA-CA-AGGAGGAC--A-AAA------C-----AC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-TAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATTTTTCTT-----ATTAGTGT-TCCTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|5 : GGACATAA--CAC-CTTAACCTCATTTTTGTATAGGAGGACAAA---------ACGAA--------------T----------GTAGGACAAAACCCACTACGGACA-AAA-C-C-C-CCTAC---A--A--C--AAT-T-T-A-TCAG-------------AGT-----GGACAAAA---CCCC---CAC--------------------------------ACTTCTT--T---TTA-AA-GAGTGGACAA-AAAACCCTAC-A-A---CA-A--------TT-TATCA-GAGTGGACAGA-AAA------CCCTACAT-T---TTATTTAGTATTCAATAAA----T--AA--------G-AAA---------CC-ATGTCA-ACTTT---TATTTTAT-----T-----T-----------------TTTATTA----ATGTATAACA--AG-T----------CAAA-C-AATT-GTATTTA-TAGCACAT---GGTGTATTATAATATGCATTACAGAAAG--CTAAGCACATAATACTA--AATAGTACATT
gi|6 : aacacctcccAC-C---TTATAGAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTTAAATAT----T-----T-----TATTAAAGATCAGTATT-TTTT-TA----ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATAcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|7 : t---CA-A--A--CA-TT-TA-CA-AGGCAGAC--A-AAA------CC---Ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcat----------TT--TACAAG-------GCAGACA-AAA-C-C-CCTC-AC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---TTCC---TCC-------------------C--G--CAG----A-----T--T---TTA-CA-AGGAGGAC-A-AAACACCTCC-C-G---CA-A--A-----TT-TA-CA-AGGAGGAT--A-AAA-----------CAC-C---Tctcacgcagattttacaaggaggacaaaattcctcccgcagattttacaaggaggacaaaacacctcccgcaaatttacaaggaggataaaacacctcccgtgaaatttacaaagtggacataatgcctcccggaca
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacaGACAAAA--CCC-CTCACGC------------AG----------------------A--------------T----------TT--TACAAG-------GAGGACA-AAA-TTC-C-TC-CC---GC-A--G--ATT-T-T-A-CAAGG-----------AGG--------ACAAAA---CACC---TCC-------------------C--G--CAA----A-----T--T---T-A-CA-AGGAGGAT-A-AAACACCTCC-C-G---TG-A--A--A--TT-TA-CA-AAGTGGAC--A-TAA------cccgtgaaatttacaaagtggacataatgcctcccggaca
gi|8 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcaC-----GGACAAAA----ACC---CAC-------------------C--GAGTGA----A-----T--TAACTTA-----GGCGGAC-A-AAAACCCACT-C-----TA-ATTA--T--TT-T--CC-AGGCGGACA-A-AAA------CC---CAC-C---TTATATAATtgcctcccggaca
gi|8 : tgtaggacaaaaacccaccCGGACA-AAA-A-C-C--C-ACCGAGT-G--A--ATT--------AACT----------TAGGC-----GGACAAAA----ACC---CAC-------------------T-----CTA----A-----TTAT---TTT-CC-AGGCGGAC-A-AAAACCCACCTT-A---TATA--A--T--TTGT-----AGGCGGACA-A-AAA------CC---CAC-C------TGTGACA---AA-ATA----TTCAAGGCTGTCGA-AAACCCACCTGTCA-TAATAA-A-TTG-ATTAT----T-----T-----T-----------------TGT--TG----GTGTAT-TAATTAA-TAT-TTTCATTTAAA-TAAATTAATttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|8 : tgtaggacaaaaacccaccAG-------GCGGACA-AAA-A-C-C--C-AC---TCTA--ATTATT-T-T-C-CA---------------GGC-----GGACAAAA----ACC---CAC-------------------C--T--TAT----A-----TAAT---TTG-TA--GGCGGAC-A-AAAACCCACC-T-GTGACA-A--A--A--TA-TT-CA-AGGCTGTCG-A-AAA------CC---CAC-C---TGTCATAATA---AA-caaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|9 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattaacttTCAA-TACATTT--TGTAAA-T-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--GAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAttgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
blockSeqs : AC A C C ACAAAACACCTCCCACGAAT AG ACCCACT T CA A CT TA CGAGTGA A A AA AGGCNNNNNNNNNNAGGC TCGC TCA GTTTGTCATTGTTATTTGATGCAAA TA AAC T T A T T GTGA T TGAT G T T AG T GGCCCTCC T TGT TTC T A . TC GG CG T CCCACCTGT T G TT TTTATTAAAGATCAGTATTTTTTTA G T CA G TT T AGCAC TAG G GCA A CAC AC AT T T
blockSeqs : . . T C ACAAAATCTTTCTTGTTAAT . . T CA . T A TCTAATT . . TA AAACACCTCCT C TCA CGCCATACGA AA AT . T . . . TA T AATT . . T A . CCCTA . TGT . . A . . . . . . . . GA TAAAGATCCATATTTTATGTATT A . . T TA . . . . . . . . . T T
blockSeqs : . . C C ACAAAACACCCCCTACGGTT . . . CA . T A CCAATG . . G AAACACCTCCT C T TCAGTGAT . AT . T . . . A . ATTA . . . A . CCC . TGT . . A . . . . . . . . GA TTTATTTTTTATTA G . . T C . . . . . . . . . T .
blockSeqs : . . C T ACAAAACGAAT . . . CC . T C CCAGTG . . A TGGAAGAC C T CCGATTAA . A . . . . . G . TTAT . . . G . CC . TGT . . A . . . . . . . . GA TTTTTTATG A . . T C . . . . . . . .
blockSeqs : . . A T ACTAAT . . . GC . T C CCAGTG . . A ACTTAGGC C . CGAGTGAA . . . . . . . A . TTAT . . . A . CC . . . . A . . . . . . . . TA TTTTGTTG G . . G C
blockSeqs : . . G C ACAAAT . . . TC . T C TGTCA . . A AGGAGG C . CCTCTT . . . . . . . G . ACA . . . A . CC . . . . T . . . . . . . . T TGTCA . . . . T
blockSeqs : . . G T ACGAAT . . . TT . T C ACAA . . A AGGAGG C . CCTCTT . . . . . . . A . AA . . . A . TC . . . . . . . . . . . . . G .
blockSeqs : . . A C ACAAA . . . A . T A ACAA . . G TAGGC A . CACGAA . . . . . . . G . GT . . . G . CC . . . . . . . . . . . . . .
blockSeqs : . . G A ACAAA . . . C . T A GCAG . . G TAGAA C . CACGAA . . . . . . . T . AT . . . . . CC . . . .
blockSeqs : . . T . AT . . . C . T A CCTC . . A TAGGA C . CACGAA . . . . . . . G . AA . . . . . CC . . . .
blockSeqs : . . C . . . T . T A GCAA . . A TAGAC T . ACTTCT . . . . . . . A . AT . . . . . TC . . .
blockSeqs : . . G . . C . T T GCAG . . A TAGGC C . CGCAGA . . . . . . . G . AA . . . . . CC . . .
blockSeqs : . A . C A GCAG . . A AGAGT . . CGCAAA . . . . . . . A . AT . . . . . CC . . .
blockSeqs : . C . T A GCAG . . A AGTA . . CTTATA . . . . . . . G . AT . . . . . CC . . .
blockSeqs : . C . . A CAT . . A AGGC . . TCTTA . . . . . . . G . AT . . . . . CC . .
blockSeqs : . C . . C AAC . . C AGGC . . CCTAA . . . . . . . A . AT . . . . . T . .
blockSeqs : . A . . A AC . . . AGGT . . CCTAA . . . . . . . . . AT . . . . . T . .
blockSeqs : . A . . A GG . . . AGGC . . TCTAA . . . . . . . . . AT . . . . . C . .
blockSeqs : . . . . . GG . . . GGC . . TGA . . . . . . . . . AA . . . . . .
blockSeqs : . . . . TGA . . . . . . . . . AT . . . . . .
blockSeqs : . . CG . . . . . . . AA . . . . . .
blockSeqs : . . . A . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ACAAAACT************************************ T* AGGC******************* AT****** **** TTTATTTTTGTTA********************************
originalCons : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGG--------------ACGAA--------------T----------TT--TACAAG-------GCGGACA-AAA-C-C-C-TC-AC---GC-A--G--ATT-T-T-A-CAAGG----------TAGGC-----GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATAT----T-----T-----T-----------------TTTA-TG----ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
finalCons : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGGACAAAACT------------------------------------TT--TACAAG-------GCGGACA-AAA-C-C-CT-C-AC---GC-A--G--ATT-T-T-A-CAAGGC-------------------GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-AAT------TT-TA-CA-AGGCGGAC--A-AAA------CC---CAC-C---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATTTTATTTTTGTTA--------------------------------ATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAGAAGAACAACACACCTACTCAAATGTGTATATGTGGACAAAAATCAGCCCATGTGTTTCCAAGGTGCACATCCTCCATCAATTTTGCGACTAGGACAAAGCCAT
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG
Alignments
lowQualScore : 666666666666666666666666666 11111111111 1 111111111111111 1111 44444444444444444444444444444444 111 11111 11 11111111111 111 111111111 666666666666666666666666666666666666666666666 22222 111 111 111 11 11
lowQualScore : 33 2 0 1 1 111111111111111111111111111 0 333 1 6666666 3 888 2 88 44 33333333333 888 2 444 1 111111111111111 6666 777 11111111111111111111111111111111 55555 66 222 2 2 2 2 1 1 2 11111 4 77777777 2 44 2 2 88 99999999999 555 1 444 3 2 9999 66 66 66 4 777777777 4 4 777 000000000000000000000000000000000000000000000 0 1 5 0 77 3 888 8 00000 444 8 444 8 444 11 0 88 3 3
lowQualScore : .. . . . . ........................... . ... . ....... . ... . .. .. ........... ... . ... . ............... .... ... ................................ ..... .. ... . . . . . . . ..... . ........ . .. . . .. ........... ... . ... . . .... .. .. .. . ......... . . ... ............................................. . . . . .. . ... . ..... ... . ... . ... .. . .. . .
lowQualScore : 77 7 7 9 7 444444444444444444444444444 7 999 8 2222222 8 555 0 00 00 55555555555 777 1 444 1 444444444444444 2222 444 99999999999999999999999999999999 66666 11 222 2 2 1 1 7 2 4 55555 4 66666666 2 55 2 7 66 66666666666 666 0 777 6 0 4444 11 11 11 4 888888888 4 4 777 444444444444444444444444444444444444444444444 3 7 0 1 99 0 333 0 00000 000 0 000 0 000 00 8 55 2 2
consensus : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGGACAAA-AC------------T-----------TTTA---CAAGGC-------GGACA-AAA-C-C-C-TC-AC---GCA--G--ATT---T-T-A-CA-AGGC--------------GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--AAAA------CC---CACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATT-----T---TA-T------------T-----TT-TGT--------TAATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
Reference ( family-1023 ) : GGACAAAA--CAC-CTCACNCTCATTTTTGTATAGGCGGACAAA-AC------------T-----------TTTA---CAAGGC-------GGACA-AAA-C-C-C-TC-AC---GCA--G--ATT---T-T-A-CA-AGGC--------------GGACAAAA---CACC---CAC-------------------C--G--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-A--A--T--TT-TA-CA-AGGCGGAC--AAAA------CC---CACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATT-----T---TA-T------------T-----TT-TGT--------TAATGTATGCCATCAA-TACATTT--TNTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-GAAAGCACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTA
gi|1 : GGACAAAA--CAC-CTCACCCTCATTTTTGTAT
gi|1 : aacacctcccATATAATA---AA-AAAAAAAT--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATT-----T---TA-T------------TAAAGATC-CGTATATTTTATAATGTATGCCATCAA-TACATTT--TGTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTATAATAT---TCAT-GAAAACACTGAA---ATAAT--TAATAATAGCACATTGTTTTCAAATATATACAGTATTCACAAAAGCACCGGGAAA-CGTTTTTGTTACACACAAAGCATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaatataataaaaaaaaaataacagtaagacaaagtaaagttgaaatattttattaaagatccgtatattttataatgtatgccatcaatacattttgtaaacaatcaatatttctattgttcttataatattcatgaaaacactgaaataattaataatagcacattgttttcaaatatatacagtattcacaaaagcaccgggaaacgtttttgttacacacaaagcattttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|10 : aacacctcccggacaaaacacctcaccctcatttttgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacgaAA-AC------------A-----------TTTA---CAAGGT-------GGACA-AAA-C-C-CCTC-AC---GCA--G--ATT---T-T-A-TA-AGGA--------------GGACAAAA---CACC---TCC-------------------C--G--AAG----A-----T--T---TTA-CA-AAGAGGAC-A-AAACACCTCC-C-G---TG-A--A--A--TT-TA-CA-TAGTGGAC--ATAA------tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacactgcgtttctatggagtaaagtgtcaatgcagtcttatgcattgccctatagagtaaaggaac
gi|11 : aaaatgtcaaagtttttttaatcaaatccacacacttttaacacatcaaatcaacaagtctgtttttcttttctctaaaatgagatattgctttgtcaaactccagaacttaccggtaattgtatgcaggaaaaattgcatcGACATAA--CAC-CTCACCCTCATTTTTGTATAtgcctccca
gi|11 : ccccaACC---TAATATAATA---AA-A-A----T--AA--CAGT--A-AGT---------CA-AAGTAA-AGTTTTAATATTAAAGATCCATA-T------------T-----TTATGTA-------TTATGTATGCCATCAA-CACAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctaatataataaaaataacagtaagtcaaagtaaagttttaatattaaagatccatattttatgtattatgtatgccatcaacaca
gi|12 : ccccagacataacacctcaccctcatttttgtataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatGGACAAAAACTAC-CTTACTC-AATTTGTGTAAAGGGACACAAATACCCAATGT-----T-----------TTTA---CAAGGT-------GGACATAAA-CAC-A-TC-AT---AC------ATT---T-T-G-CA-AGTA--------------GGATAAAA-----------AT-------------------C--G--CCATACGA-----T--T---TTG-CA-AGTCGGAT-A-AAAACC
gi|13 : taaatgtaggacaaaaaccacccAGACGGACAAA-A----------------------------A---CCCACC-------GGACA-AAA-A-C-C--C-AC---CCAATG--ATT---T-T-A-CATAGGC--------------GGACATAA----ACC---CAC-------------------T-----CTT----A-----T--TA--TTGTCC-AGGTGGAC-A-AAATCCCGCC-CTA---TATA--G--T--TT-TG-TA--GGCGGAC--AAAAC-----CC---CACCTGTTTATAT------------A----T--AA--CTGT--GTATA---------TATATATAAGAGTT---ATA----------------------------------C-TGT--------CAATATATAATATTACTTACATTT--TGTAAGTT-AATAAATATacccaattcatatggtgtgcagaaattcggtaaatttcggttatttttttttacgtttctagattatttatcactattttattt
gi|14 : tttacatggaGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAGACAAA-AC----------------------------------------------------A-C-C---TC-CC---ACA--A--ATT---T-T-A-CA-AGGC--------------TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--ATAA-----------TACG---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATT-----T---aacatttaactt
gi|15 : tggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACCCTCTTTTTTGTATAGGCAGACAAA-AC----------------------------------------------------A-C-C---TC-CC---ACA--A--ATT---T-T-A-CA-AGGC--------------TGACTAAA---CCCCTCACAC-------------------T--G---------A-----T--T---TTA-CA-AGGCAGAC-A-AAACACCTCC-T-G---TA-A--A--A--TT-TA-CA-AGGTGGAC--ATAA-----------TACG---TACTATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTGAAATATT-----
gi|16 : ggacaaaacacctcccggacaaaacacctcctGGACAAAA--CAC-CTCACACTCATTTTTGTATAGGCGGACAAA-ACACCTCCCACGAAT-----------TTTA---CAAGGC-------AGACA-AAACC-C-C-TC-AC---GCA--G--AT
gi|17 : acaaaacacctcccGAC-A-AAATCCATCC-C-A---CT-A--A--T--TT-TA-TA-AGCTGGA---AAAAGGCCCTCC---CATG---TTAT-TAACA---Agtcagttttattatttaagaaagatgtaattcaaacaccacgtgtgttcacatgataaatataaataaagtattgtgaaaagacaaacgatgaactaagtaggtctttgagattatt
gi|17 : ------------T-----------TTTA---TAAGCT-------GGAAA-AAGGC-C-C-TC--C----CA--T--GTTA--T-T-AACA-AGGT--------------TGACAAAATCGCTCC---CATGTTTGTCATTGTTATTTGAT--G--CAA----A-----T--T---TTA-CA-AGGCAGAC-A-AAGTCCCTCC-C-G---CA-A--AATT--TT-TA-CA-AGCTGGAA--AAAA------TC---Cggttgacaaaatcgctcccatgtttgtcattgttatttgatgcaaattttacaaggcagacaaagtccctcccgcaaaatttttacaagctggaaaaaatccctcccatgtgtgccattgttatttg
gi|18 : gacaaaatccatcccactaaGGACAAA-AC------------A-----------CCTC---C----C-------GGACATAAC-C-C-C-TC-AC---CCT--C--ATT---TAT-G-TATAGAA--------------GGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCAGAC-A-AAACCCCTCA-C-T---CA-G--A--T--TT-TA-CA-AGGAGGAC--AAAA-----------TACC---Tctcccatgtgtgccattgttatttg
gi|18 : GACAAAA--CCC-CTCA--CTCA--------------GA-------------------T-----------TTTA---CAAGGA-------GGACA-AAA-TAC-C-TC-CA---GCA--G--ATT---T-T-A-ccagcagatttta
gi|19 : ggacaaaacacctcccggacataacccctcaccctcatttatgtatagaaggacaaaacacctaccacgaattttacaaggcaACAAA-AC------------A-----------TCTC---C----C-------GGACA-TAA-C-CAC-TC-ACT--GTC--A--TTT---T-T-G-TATAGGA--------------GGACAAAA---CACC---TCC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCC-C-G---CA-G--A--T--TT-TA-CA-AGGAGGAC--AAAA-----------TACC---T
gi|2 : C-------GGACA-AAA-T-C-C----AC---CCA--GTGATT---T-TTA-CATAGAC--------------GGACATAA----ATC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--TTATT-TG-T--AGGTGGACA-AAAA------CC---CACCTGTTTATAT-ATA---Accgacttt
gi|20 : gacaaaaacccacC--------------GGACGAAA----ACC---CAC-------------------TCAG--TGA----T-----T--T---TTA-CTTAGGCGGAC-ATAAACCC--AC-C-A---TA-ATTA--T--TT-T--CC-AGGTGGACA-AAAA------CC---TACCTGTTTATATATTA---ctatgtatatatataagggttatactgtcaatatatattattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaaaccaataaataaagacattttattcaacattttttatttttctaattgcataacatgacaatgaagaataaagggtgatgatgataaaatgggatccaactaaagatattaaagataatttcaatggtagggaatgcaaactgtatacaacattttac
gi|21 : caaataccgacGGATTAAA--TCC-CTTCCGCTTATTTTGATATGAGTGGACAAA-ATCTTTCTTGTTAAT-----------TTTA---CAAGGT-------TGAGA-AGATC-C-C-TC-TT---GCA--A--ATT---T-T-A-CA-AGGC--------------GAACAAAA---ctatgtatatatataagggtt
gi|22 : tttttgtatgagtGAACAACA--CAC-CT---ACTCAAATGTGTATATGTGGACAAA-AA------------TCAGCCCATGTGTTTC---CAAGGT-------GCAC----A-T-C-C-TC--C---ATC--A--ATT---T-T-G-CG-ACTA--------------GGACAAAG---C
gi|24 : gagaaA-A--A--T--AT-TA--A-AGGCTGACG-AAAA------CC---CACC---TGTCATAATA---AA-cat
gi|25 : aaacccacctgtgacaGGACTAAA--CAT-CCCCCGCTCATTTTTGTATAGGTGGACAAA-ACACCCCCTACGGTT-----------TTCA---CAAGGT-------GGACA-AAA-C-ttgattatttttgttggtatattaattgcattattttca
gi|26 : taggacaaaacacaccctGGT--------------GGACAAAA---AAT-----AC-------------------C-----CGATTA-A-----T--T---TTG-CA-AGTAGGAC-A-AAACCC
gi|27 : GGACAAAA--AACACTC-CACTCATATTTGTATAAACGGTCAacctgttcatttattggatata
gi|28 : tgaatgtagaacaataatcacaccACAAAA--TCC-CTCACGCTCATTTCTATATAGGTGGACAAA-
gi|3 : C-------GGACA-AAA-A-C-C--C-AC---CCA--GTGATT---T-T-A-CATAGGC--------------GGACATAA----ACC---CAC-------------------C-----CTA----A-----T--TAT-TTT-CC-AGGTGGAC-A-AAAACCCGCC-C-----TA-T--A--T--AA-TA-CGTAGGCGGACA-AAAA------TC---TACCTGTTTATATATTA---tt
gi|4 : gacaaaaacccacGAACAAAA--CAC-CTCACTCTCATTTTTGTATAGGCGGACGAA---------------T-----------TTTA---CAAGGC-------GGACA-AAA-C-C-C-TC-AC---GCA--G--AGT---T-T-A-TA-AGGCNNNNNNNNNNAGGCGGACAAAA---CACC---TAC-------------------C--A--CGA----A-----T--T---TTA-CA-AGGCGGAC-A-AAACCCCTCA-C-G---CA-A--A--T--TT-TA-CA-AGGAGGAC--AAAA------C-----ACC---TTATATAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-TAGTAA-AGTTGAAATATT-----T---T--T------------T-----TA-TG-----------ATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATTTTTCTT-----ATTAGTGT-TCCTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TAATAAAAGCACATTGTTTTCAA--ACATACAGTATTAACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTActatgtgtataaatataagggttatactgtcaatatatattaatattacttacattttgttcacatttgaaacagttttcagtattagaaatagataacattcattctaaataaaagccaacaaaacagacattttattcaacattttttttatttttctaattgcataacgtgacaaagaagaataaaggctgatgatgataaaatggtatccaattaaagatgttttcaatggtatggaatgcaaactgtatacaatatttta
gi|5 : GGACATAA--CAC-CTTAACCTCATTTTTGTATAGGAGGACAAA-AC------------GAA---------TGTAGGACAAAACCCACTACGGACA-AAA-C-C-C-CCTAC---A-A--C--AAT---T-T-ATCA-GAGT--------------GGACAAAA---CCCC---CAC--------------------------------ACTTCTT--T---TTA-AA-GAGTGGACAA-AAAACCCTAC-A-A---CA-A--------TT-TATCA-GAGTGGACAGAAAA------CCCTACATT---TTATTTAGTATTCAATAAA----T--AA--------G-AAA---------CC-ATGTCA-ACTTT---TATT-----T---TATT------------T-----TT-TAT--------TAATGTATAACA--AG-T----------CAAA-C-AATT-GTATTTA-TAGCACAT---GGTGTATTATAATATGCATTACAGAAAG--CTAAGCACATAATACTA--AATAGTACATT
gi|6 : aacacctcccACC---TTATAGAATA---AA-AAA----T--AA--CAGT--A-AGA---------CA-AAGTAA-AGTTTAAATATT-----T---TA-TTAAAGATCAGTAT-----TT-TTT--------TAATGTATGCCATCAA-TACATTT--TTTAAA-C-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--TGATAATAACACATTGTTTTCAAATATATACAGCATTCACAAAGGCACTGGGAAATCG-TTTTGTTACATACAAAACGTTATAcatttatcagtcatttgtcttacaatttttaatgtaatcttat
gi|7 : tAA-AC------------A-----------TTTA---CAAGGC-------AGACA-AAA-C-C-CCTC-AC---GCA--G--ATT---T-T-A-CA-AGGA--------------GGACAAAA---TTCC---TCC-------------------C--G--CAG----A-----T--T---TTA-CA-AGGAGGAC-A-AAACACCTCC-C-G---CA-A--A-----TT-TA-CA-AGGAGGAT--AAAA-----------CACC---Ttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagagtggaaaacattgtgtttctatggagtaaaatgttaatgcagtcttatgcattgtcccatagagtaaaggag
gi|7 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcGGACAAAA--CAC-CTCCCG--------------------CAAA---------------------------TTTA---CAAGGA-------GGATA-AAA-CAC-C-TC-CC---GTG--A--AAT---T-T-A-CA-AAGT--------------GGACATAA---TGCC---TCC-------------------C--G--cccgtgaaatttacaaagtggacataatgcctcccggaca
gi|8 : aaaatgtcaattaaaagttttttaatcaaatccacacgctttaacacatcaaatcaacaagtctgtttttcttttctcttaaatgagcaattgctttgacaaactccagaacttacggtaattgtatgcaggaaaaattgcatcaaacatttacaaggcagacaaaacccctcacgcagattttacaaggaggacaaaattcctcccgcagattttacaaggaC--------------GGACAAAA----ACC---CAC-------------------C--GAGTGA----A-----T--TAACTTA-----GGCGGAC-A-AAAACCCACT-C-----TA-ATTA--T--TT-T--CC-AGGCGGACA-AAAA------CC---CACC---TTATATAATgaca
gi|8 : tgtaggacaaaaacccaccC-------GGACA-AAA-A-C-C--C-ACCGAGTG--A--ATTAACT-T------AGGC--------------GGACAAAA----ACC---CAC-------------------T-----CTA----A-----TTAT---TTT-CC-AGGCGGAC-A-AAAACCCACCTT-A---TATA--A--T--TTGT-----AGGCGGACA-AAAA------CC---CACC------TGTGACA---AA-ATA----TTCAAGGCTGTCGA-AAACCCACCTGTCA-TAATAA-A-TTGA-----------T---TA-T------------T-----TT-TGT--------TGGTGTAT-TAATTAA-TAT-TTTCATTTAAA-TAAATTAATttgtaggcggacaaaaacccacctgtgacaaaatattcaaggctgtcgaaaacccacctgtcataataaattgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|8 : tgtaggacaaaaacccaccA-AC------------T-----------T--------AGGC-------GGACA-AAA-A-C-C--C-AC---TCT--A--ATTAT-T-T-T-CC-AGGC--------------GGACAAAA----ACC---CAC-------------------C--T--TAT----A-----TAAT---TTG-TA--GGCGGAC-A-AAAACCCACC-T-GTGACA-A--A--A--TA-TT-CA-AGGCTGTCG-AAAA------CC---CACC---TGTCATAATA---AA-caaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
gi|9 : tgtaggacaaaaacccacccggacaaaaacccaccgagtgaattTCAA-TACATTT--TGTAAA-T-AATCAATATTTC-T-----AT---TGT-TCTTACAATAT---TCAC-AAAAGCACTGAA---ATAAT--GAATAATAGCACATTGTTTTCAA--ATATAGAGTATTCACAAAAGCACCGGGAAATCGTTTTTGTTACACACAAAGCATTTTAttgattatttttgttggtgtattaattaatattttcatttaaataaattaatcaaatatacagtaaagttaaattcttttatcagattcttcattcctctgattatttgatatcatcttat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): GGACGAAAACCCACCCCGACAAAAAAACACCCAGTGATTTTAACTTATTAAATTTAAATTTTTTTCCAGGCCGACAAAAACACACGCTATATAATTTGT
Unaligned ( gi|29 ): GATATTTATATGCATGACAAATGTAAGAAGGTTG